Citrus Sinensis ID: 023561

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEEccccccEEEEEEEccccccEEEEEEEEEEcccccHHHHccccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEccEEEEccccccccEEEEEcccccccHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHccccEEEcccccccccHHHHHHHHHcccccccEEEc
Secondary Structure Prediction (SSPRO)
cccHccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEEcHHHHHHHHcccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHccccccccccEEEcccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEcHHHcccccHHHEEEEcccccccEEEEcc
Coil and Loop (DISEMBL)
mdiekpsnktagkpiqcraaiatapgeplvidevivdppnsheVRVRIICTSLChsdvtfwkmkdfpavfprilgHEAIGVVEsvgenvdgvvegdvviphfladctecvgcrskkgnlcsafpfkispwmprdqtsrfkdlrgetihhfvsvssfseytvLDIAHvvkvdptvppnracllscgvstgvgAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKfeigkrfgvtefvnskncgdksvSQVLLSIYDLPLLTISVSF
Flexible Loop (DISEMBL)
mdiekpsnktagkpiqCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSafpfkispwmprdQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLlsiydlplltisvsf
Low Complexity Region (SEG)
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIgvvesvgenvdgvvegdvvIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF
Disordered region (IsUnstruct)
***************QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS***
Disordered Region (DISOPRED)
***************QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF
Disordered Region (DISEMBL)
************KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF
Disordered Region (DISPRO)
***********GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q9FH04	390	Alcohol dehydrogenase-lik	yes	no	0.939	0.674	0.696	1e-107
Q9SK87	386	Alcohol dehydrogenase-lik	no	no	0.935	0.678	0.609	5e-89
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.907	0.654	0.605	2e-87
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.907	0.652	0.601	6e-86
P48977	380	Alcohol dehydrogenase OS=	N/A	no	0.932	0.686	0.503	5e-70
P13603	380	Alcohol dehydrogenase 1 O	N/A	no	0.932	0.686	0.503	6e-70
Q96533	379	Alcohol dehydrogenase cla	no	no	0.914	0.675	0.520	7e-70
P25141	382	Alcohol dehydrogenase 1 O	N/A	no	0.935	0.685	0.515	2e-69
P04707	379	Alcohol dehydrogenase 2 O	N/A	no	0.925	0.683	0.511	8e-69
P14674	380	Alcohol dehydrogenase 2 O	N/A	no	0.925	0.681	0.503	1e-68

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/264 (69%), Positives = 222/264 (84%), Gaps = 1/264 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct: 190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query: 247 VTEFVNSKNCGDKSVSQVLLSIYD 270
           VTEFVNS  C    VS+V+  + D
Sbjct: 250 VTEFVNSMTCEKNRVSEVINEMTD 273

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  327 bits (839), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 161/264 (60%), Positives = 203/264 (76%), Gaps = 2/264 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A 68
           T GKPI+C+AAI    GEPLVI+E+ VDPP ++EVR++I+CTSLCH+DVTFWK+   P A
Sbjct: 7   TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLA 66

Query: 69  VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-I 127
            FPRILGHEA+GVVES+GE VDG  +GDVV+P F   C EC  C S K N C+ +    +
Sbjct: 67  RFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYL 126

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+
Sbjct: 127 SNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVA 186

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG+
Sbjct: 187 TGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGI 246

Query: 248 TEFVNSKNCGDKSVSQVLLSIYDL 271
           T+FVN   CG+K++S+V+  + D+
Sbjct: 247 TDFVNPALCGEKTISEVIREMTDV 270

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  322 bits (825), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/256 (60%), Positives = 197/256 (76%), Gaps = 2/256 (0%)

Query: 12  GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
           GKPI C+AAI    GE LVI+++ VDPP ++EVR++I+CTSLCH+D+TFWK+   P + F
Sbjct: 11  GKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRF 70

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
           PRILGHEA+GVVES+GENVDG  +GDVV+P F   C EC  C+S K N C  +    IS 
Sbjct: 71  PRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISN 130

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                  SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct: 131 TRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTG 190

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T+
Sbjct: 191 IGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTD 250

Query: 250 FVNSKNCGDKSVSQVL 265
           F+N   CG+K +S+V+
Sbjct: 251 FINPTLCGEKKISEVI 266

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  317 bits (812), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 154/256 (60%), Positives = 200/256 (78%), Gaps = 2/256 (0%)

Query: 12  GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
           GKPI+C+AA++  PGE LVI+E+ VDPP ++EVR++IICTSLCH+DV+F K+   P A F
Sbjct: 12  GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
           PRILGHEA+GV+ES+GE+V+G  +GDVV+P F   C EC  C+S K N C+ F    +S 
Sbjct: 72  PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                 TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct: 132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG T+
Sbjct: 192 IGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTD 251

Query: 250 FVNSKNCGDKSVSQVL 265
           F+NS  CG+  +S+V+
Sbjct: 252 FINSTLCGENKISEVI 267

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P48977|ADH_MALDO Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1

 Score =  264 bits (675), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/264 (50%), Positives = 185/264 (70%), Gaps = 3/264 (1%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           + TAG+ I+CRAA+A   G+PLVI+EV V PP ++EVR++I+ TSLCH+DV FW+ K   
Sbjct: 2   SNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQN 61

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
            +FPRI GHEA G+VESVGE V  +  GD V+P F  +C +C  C+S++ N+C       
Sbjct: 62  PLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRINT 121

Query: 128 SPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
               M  D  SRF  ++G+ I+HFV  S+FSEYTV+ +  + K++P+ P ++ CLLSCG+
Sbjct: 122 DRGVMLSDGKSRF-SIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGI 180

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STG+GA    A  + GSTV +FGLG++GLA AEGARL GA+RIIGVD+ S++FE  K+FG
Sbjct: 181 STGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFG 240

Query: 247 VTEFVNSKNCGDKSVSQVLLSIYD 270
           VTEFVN K   +K V +V+  + +
Sbjct: 241 VTEFVNPK-AHEKPVQEVIAELTN 263

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P13603|ADH1_TRIRP Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1

 Score =  264 bits (674), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/264 (50%), Positives = 182/264 (68%), Gaps = 3/264 (1%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           + TAG+ I+CRAA+A   G+PLVI+EV V PP + EVR++I+ TSLCH+DV FW+ K   
Sbjct: 2   SNTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQT 61

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
            +FPRI GHEA G+VESVGE V  +  GD  +P F  +C EC  C+S++ N+C+      
Sbjct: 62  PLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRINT 121

Query: 128 SPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
               M  D  SRF  ++G+ +HHFV  S+FSEYTV+    V K++P  P ++ C+LSCG+
Sbjct: 122 DRGVMINDNKSRF-SIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGI 180

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
            TG+GA    A  + GS+V IFGLG++GLA AEGAR+ GA+RIIGVD++S +FE+ K+FG
Sbjct: 181 CTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRFELAKKFG 240

Query: 247 VTEFVNSKNCGDKSVSQVLLSIYD 270
           V EFVN K+  DK V QV+  + D
Sbjct: 241 VNEFVNPKD-HDKPVQQVIAEMTD 263

Trifolium repens (taxid: 3899)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  263 bits (673), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 138/265 (52%), Positives = 182/265 (68%), Gaps = 9/265 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PLVI++V V PP + EVR++I+ T+LCH+D   W  KD   +
Sbjct: 3   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGL 62

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC----SAFPF 125
           FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC    SA   
Sbjct: 63  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 122

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CG
Sbjct: 123 GI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCG 178

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E  K+F
Sbjct: 179 VPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF 238

Query: 246 GVTEFVNSKNCGDKSVSQVLLSIYD 270
           GV EFVN K+  DK + +V++ + D
Sbjct: 239 GVNEFVNPKD-HDKPIQEVIVDLTD 262

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P25141|ADH1_PETHY Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/266 (51%), Positives = 179/266 (67%), Gaps = 4/266 (1%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S+ TAG+ I+C+AA+A   G+PLVI+EV V PP   EVR++I+ TSLCH+DV FW+ K  
Sbjct: 2   SSNTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKGQ 61

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FPRI GHEA G+VESVGE V  +  GD V+P F  +C +C  C+S++ N+C      
Sbjct: 62  TPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLRIN 121

Query: 127 ISPW-MPRDQTSRF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 184
                M  D  +RF KD  G+ I+HFV  S+FSEYTV     V K+DP  P ++ C+LSC
Sbjct: 122 TDRGVMIHDGQTRFSKD--GKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLSC 179

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
           G+STG+GA    A    GSTV IFGLG++GLA AEGAR+ GA+RIIGVD+   +F   K+
Sbjct: 180 GISTGLGATLNVAKPTKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFNDAKK 239

Query: 245 FGVTEFVNSKNCGDKSVSQVLLSIYD 270
           FGVTEFVN K+ GDK V QV+  + D
Sbjct: 240 FGVTEFVNPKDHGDKPVQQVIAEMTD 265

This protein is responsible for the conversion of alcohols to aldehydes in plants and is important for NAD metabolism during anaerobic respiration.

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P04707|ADH2_MAIZE Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1

 Score =  260 bits (664), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 134/262 (51%), Positives = 177/262 (67%), Gaps = 3/262 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+CRAA+    G+PL I+EV V PP + EVR++I+ T+LCH+DV FW+ K    V
Sbjct: 3   TAGKVIKCRAAVTWEAGKPLSIEEVEVAPPQAMEVRIKILYTALCHTDVYFWEAKGQTPV 62

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FPRILGHEA G+VESVGE V  V  GD V+P F  +C EC  C+S++ N+C      +  
Sbjct: 63  FPRILGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECAHCKSEESNMCDLLRINVDR 122

Query: 130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
             M  D  SRF  + G+ I HFV  S+FSEYTV+ +  + K++P  P ++ C+LSCG+ST
Sbjct: 123 GVMIGDGKSRFT-ISGQPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGIST 181

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G+GA    A    GSTV IFGLG++GLA  EGARL GA+RIIGVD+   K+E  K+FG T
Sbjct: 182 GLGATLNVAKPAKGSTVAIFGLGAVGLAAMEGARLAGASRIIGVDINPAKYEQAKKFGCT 241

Query: 249 EFVNSKNCGDKSVSQVLLSIYD 270
           EFVN K+  DK V +VL+ + +
Sbjct: 242 EFVNPKD-HDKPVQEVLIELTN 262

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14674|ADH2_SOLTU Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/262 (50%), Positives = 179/262 (68%), Gaps = 3/262 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I+C+AA+A   G+PLV++EV V PP   EVR++I+ TSLCH+DV FW+ K    V
Sbjct: 4   TTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPV 63

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FPRILGHEA G+VESVGE V  +  GD V+P F  +C +C  C+S++ N+CS        
Sbjct: 64  FPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDR 123

Query: 130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
             M  D  SRF  + G+ I+HFV  S+FSEYTV+ +  V K++P  P ++ C+LSCG+ST
Sbjct: 124 GVMINDGQSRF-SINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGIST 182

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G+GA    A    GS+V IFGLG++GLA AEGAR+ GA+RIIGVD+ + +FE  K+FGVT
Sbjct: 183 GLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVT 242

Query: 249 EFVNSKNCGDKSVSQVLLSIYD 270
           EFVN K+   K V +V+  + D
Sbjct: 243 EFVNPKDY-SKPVQEVIAEMTD 263

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
255539138	386	alcohol dehydrogenase, putative [Ricinus	0.914	0.663	0.742	1e-111
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.942	0.687	0.708	1e-110
7705214	389	alcohol dehydrogenase ADH [Solanum lycop	0.964	0.694	0.7	1e-109
7705215	390	alcohol dehydrogenase ADH [Solanum lycop	0.939	0.674	0.714	1e-108
359492331	395	PREDICTED: alcohol dehydrogenase-like 7-	0.939	0.665	0.695	1e-108
224065707	398	predicted protein [Populus trichocarpa]	0.942	0.663	0.762	1e-107
297795321	390	hypothetical protein ARALYDRAFT_494804 [	0.921	0.661	0.702	1e-106
356554319	387	PREDICTED: alcohol dehydrogenase-like 7-	0.946	0.684	0.694	1e-105
356554321	388	PREDICTED: alcohol dehydrogenase-like 7-	0.957	0.690	0.690	1e-105
15238330	390	alcohol dehydrogenase-like 7 [Arabidopsi	0.939	0.674	0.696	1e-105

>gi|255539138|ref|XP_002510634.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223551335|gb|EEF52821.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 221/256 (86%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           + G PI+C+AA+   PGEPLVI+E++V PPN HEVR++IICTSLC SD+TFW++KDFPAV
Sbjct: 8   SVGTPIRCKAAVCRKPGEPLVIEEILVAPPNRHEVRIQIICTSLCQSDITFWRLKDFPAV 67

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FPRILGHEA+GVVESVGE+V    EGD VIP FL DC +C  C SKK NLCS  PFK+SP
Sbjct: 68  FPRILGHEAVGVVESVGEDVKEFKEGDTVIPTFLPDCGDCTDCISKKSNLCSKLPFKVSP 127

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
           WMPR +TSRF DL GE ++HF+SVSSFS+YTV+DIAH+ KVDP++PPNRACLLSCGVSTG
Sbjct: 128 WMPRYETSRFTDLNGEALYHFLSVSSFSQYTVIDIAHLTKVDPSIPPNRACLLSCGVSTG 187

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           VGAAWRTANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD    KFEIGK+FGVTE
Sbjct: 188 VGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDTNPNKFEIGKKFGVTE 247

Query: 250 FVNSKNCGDKSVSQVL 265
           FV++ + G+KS SQV+
Sbjct: 248 FVSAGDLGNKSASQVI 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/264 (70%), Positives = 226/264 (85%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           + +T GKPI+CRAA+    GEPLV++EV+V PP + EVR+RIICTSLC+SD+TFWK+KD 
Sbjct: 3   AGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKDP 62

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
           P  FPRILGHEA+GVVESVGENV  V EGD+V+P FL DC EC  CRS+K NLCS FPFK
Sbjct: 63  PGCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFPFK 122

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           +SPWMPR ++SRF DL+GE ++HF+ VSSFSEYTV+DIA++ K+DP +PPNRACL SCGV
Sbjct: 123 VSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCGV 182

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW+TANVE GSTV IFGLG+IGLAVAEGARLCGA+RIIGVD+  +KFEIGK+FG
Sbjct: 183 STGVGAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIGKKFG 242

Query: 247 VTEFVNSKNCGDKSVSQVLLSIYD 270
           VT+FVNS NCG+K V QV++ + D
Sbjct: 243 VTDFVNSGNCGNKPVKQVIMEMTD 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705214|gb|AAB33480.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/270 (70%), Positives = 226/270 (83%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           M   K     AGKPI+C+AA+A   GEPLVI+EVIV PP +HEVRV+IICTSLCH+D+T 
Sbjct: 1   MASTKQYFSAAGKPIRCKAAVARKAGEPLVIEEVIVAPPKAHEVRVKIICTSLCHTDITL 60

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WK+K+FP  FPRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLC
Sbjct: 61  WKLKEFPGCFPRILGHEAFGVVESVGEDVDELKEGDSVVPIFLPDCMDCVDCKSKKSNLC 120

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S FP ++SP + R+ TSRF +  GET+HHF+ +SSFSEYTV+D+ +V K+DP +PPNRAC
Sbjct: 121 SKFPIQVSPLLHRNDTSRFSNAAGETLHHFLYISSFSEYTVVDVVNVTKIDPEIPPNRAC 180

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAW+TANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD+ S KFE
Sbjct: 181 LLSCGVSTGVGAAWKTANVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDINSNKFE 240

Query: 241 IGKRFGVTEFVNSKNCGDKSVSQVLLSIYD 270
           IGK+FG+TEFVNSK+C DK +SQV++ + D
Sbjct: 241 IGKQFGITEFVNSKSCVDKPISQVIIEMTD 270

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705215|gb|AAB33481.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/263 (71%), Positives = 225/263 (85%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           +KTAGKPI+CRAA+A   GEPLVI+EVIV PP +HEVR++IICTSLCH+D+T WK+K+FP
Sbjct: 10  SKTAGKPIRCRAAVARKAGEPLVIEEVIVAPPKAHEVRLKIICTSLCHTDITLWKLKEFP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             FPRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLCS FP + 
Sbjct: 70  GCFPRILGHEAFGVVESVGEDVDHLKEGDSVVPIFLPDCMDCVDCKSKKSNLCSKFPIQS 129

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           S  + RD TSRF +  GET+HH++ +SSFSEYTV+D+ +V K+DP +PPNRACLLSCGVS
Sbjct: 130 SLLLHRDDTSRFTNADGETLHHYLYISSFSEYTVVDVVNVTKIDPEIPPNRACLLSCGVS 189

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TGVGAAW+TANVE GSTVVIFGLGS+GLAVAEGARLCGATRIIGV   S+KFEIGK+FGV
Sbjct: 190 TGVGAAWKTANVEPGSTVVIFGLGSVGLAVAEGARLCGATRIIGVGRNSDKFEIGKQFGV 249

Query: 248 TEFVNSKNCGDKSVSQVLLSIYD 270
           TEFVNSK+CGDK VSQV++ + +
Sbjct: 250 TEFVNSKSCGDKPVSQVIIEMTN 272

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492331|ref|XP_002285917.2| PREDICTED: alcohol dehydrogenase-like 7-like [Vitis vinifera] gi|302141684|emb|CBI18887.3| unnamed protein product [Vitis vinifera]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/263 (69%), Positives = 225/263 (85%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           ++T GKPI+CRAA++   GEPLV++EV+V PP + EVR+RIICTSLCHSD+TFWK+K+ P
Sbjct: 15  SQTRGKPIRCRAAVSRKAGEPLVMEEVMVAPPMAGEVRIRIICTSLCHSDLTFWKLKEPP 74

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEA+GVVESVGENV  V EGD V+P F+ DC EC+ CRS+K NLCS FPF+I
Sbjct: 75  ACFPRILGHEAVGVVESVGENVTEVAEGDTVLPIFIPDCGECMDCRSEKSNLCSKFPFEI 134

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           SPW+PR ++SRF DL+GE ++HF++VSSFSEYTV+DI ++ K+ P +PPN+ACL SCGVS
Sbjct: 135 SPWLPRHKSSRFTDLKGEVLYHFLNVSSFSEYTVVDIDNITKISPAIPPNKACLFSCGVS 194

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TGVGAAWRTA VE GSTVVIFGLG+IGLAVAEGARLCGA+RIIGVD   EKF++ K+FGV
Sbjct: 195 TGVGAAWRTAKVEKGSTVVIFGLGAIGLAVAEGARLCGASRIIGVDTNLEKFDVAKKFGV 254

Query: 248 TEFVNSKNCGDKSVSQVLLSIYD 270
           TEFVN +NCGDK VSQ ++ + D
Sbjct: 255 TEFVNPRNCGDKPVSQAIVEMTD 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065707|ref|XP_002301931.1| predicted protein [Populus trichocarpa] gi|222843657|gb|EEE81204.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/265 (76%), Positives = 233/265 (87%), Gaps = 1/265 (0%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           MD EK S + AGKPI C+AA+A  PGEPLVI+E+IV PP+ HEVRVRIICTSLC SDVTF
Sbjct: 1   MDGEKFSVE-AGKPILCKAAVARKPGEPLVIEEIIVAPPSHHEVRVRIICTSLCQSDVTF 59

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WK+KD PAVFPRILGHEAIGVVESVGE+VD VVEGDVVIP FL DC +C  C+SKK NLC
Sbjct: 60  WKLKDLPAVFPRILGHEAIGVVESVGEDVDEVVEGDVVIPVFLPDCGDCADCKSKKSNLC 119

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S  PF++SPWMPRD+TSRF +L+GE ++HF++VSSFSEYTV+D AH+VK+DP++PP++AC
Sbjct: 120 SKLPFQVSPWMPRDKTSRFTNLKGEVLYHFLNVSSFSEYTVVDTAHIVKIDPSIPPSKAC 179

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAWRTANVE GSTVVIFGLGSIGLAVAEGAR+ GAT+IIGVDV  EKFE
Sbjct: 180 LLSCGVSTGVGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARISGATKIIGVDVNQEKFE 239

Query: 241 IGKRFGVTEFVNSKNCGDKSVSQVL 265
           I K+FGVT+FVN   CGDK VSQV+
Sbjct: 240 IAKKFGVTDFVNVGECGDKPVSQVI 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795321|ref|XP_002865545.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata] gi|297311380|gb|EFH41804.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/259 (70%), Positives = 223/259 (86%), Gaps = 1/259 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP  +EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSRKPIRCKAAVSRKAGEPLVMEEIMVAPPQPYEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC ECV C+S+K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGECVDCKSQKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR + +SRF DL G+T+ HF++VSSFSEYTVLD+A++VK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYENSSRFTDLNGQTLFHFLNVSSFSEYTVLDVANIVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G+ FG
Sbjct: 190 STGVGAAWETAKVEQGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPAKFQVGQNFG 249

Query: 247 VTEFVNSKNCGDKSVSQVL 265
           +TEFVNS  C  KSVS+V+
Sbjct: 250 ITEFVNSMTCEKKSVSEVI 268

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554319|ref|XP_003545495.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/265 (69%), Positives = 221/265 (83%)

Query: 4   EKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM 63
           +K +  + G+PI+C+AAI   PG PL I+E+IV PP   E R+R+ICTSLCHSDVTFWKM
Sbjct: 3   DKLATTSEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTFWKM 62

Query: 64  KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 123
           +  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLCS F
Sbjct: 63  EVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLCSKF 122

Query: 124 PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 183
           PF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRACLLS
Sbjct: 123 PFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLLS 182

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
           CGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E GK
Sbjct: 183 CGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETGK 242

Query: 244 RFGVTEFVNSKNCGDKSVSQVLLSI 268
           +FG+T+FV++    +KSVSQV++ +
Sbjct: 243 KFGLTDFVHAGESENKSVSQVIIEM 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554321|ref|XP_003545496.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/268 (69%), Positives = 221/268 (82%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           M  +  S+   G+PI+C+AAI   PG PL I+E+IV PP   E R+R+ICTSLCHSDVTF
Sbjct: 1   MASQNSSSLCEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTF 60

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WKM+  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLC
Sbjct: 61  WKMEVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLC 120

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S FPF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRAC
Sbjct: 121 SKFPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRAC 180

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E
Sbjct: 181 LLSCGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYE 240

Query: 241 IGKRFGVTEFVNSKNCGDKSVSQVLLSI 268
            GK+FG+T+FV++    +KSVSQV++ +
Sbjct: 241 TGKKFGLTDFVHAGESENKSVSQVIIEM 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238330|ref|NP_199040.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana] gi|75333830|sp|Q9FH04.1|ADHL7_ARATH RecName: Full=Alcohol dehydrogenase-like 7 gi|10177010|dbj|BAB10198.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|19698971|gb|AAL91221.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|22136298|gb|AAM91227.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|332007405|gb|AED94788.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/264 (69%), Positives = 222/264 (84%), Gaps = 1/264 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct: 190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query: 247 VTEFVNSKNCGDKSVSQVLLSIYD 270
           VTEFVNS  C    VS+V+  + D
Sbjct: 250 VTEFVNSMTCEKNRVSEVINEMTD 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.939	0.674	0.636	9.3e-91
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.935	0.678	0.556	5.7e-75
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.907	0.654	0.546	5.9e-73
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.907	0.652	0.554	7.5e-73
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.925	0.683	0.446	1.2e-56
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.925	0.657	0.462	2.5e-56
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.925	0.688	0.448	6.1e-55
ZFIN|ZDB-GENE-040426-1165	380	zgc:63568 "zgc:63568" [Danio r	0.903	0.665	0.452	3.4e-54
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.878	0.645	0.438	4.3e-54
ZFIN|ZDB-GENE-040426-1910	378	zgc:77938 "zgc:77938" [Danio r	0.910	0.674	0.438	1.7e-52

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 168/264 (63%), Positives = 206/264 (78%)

Query:     8 NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
             NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct:    10 NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query:    68 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             A FPRILGHEAI                   +P F+ DC +CV C+S K NLCS FPFK+
Sbjct:    70 ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query:   128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
             SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct:   130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query:   187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
             STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct:   190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query:   247 VTEFVNSKNCGDKSVSQVLLSIYD 270
             VTEFVNS  C    VS+V+  + D
Sbjct:   250 VTEFVNSMTCEKNRVSEVINEMTD 273

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 147/264 (55%), Positives = 187/264 (70%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A 68
             T GKPI+C+AAI    GEPLVI+E+ VDPP ++EVR++I+CTSLCH+DVTFWK+   P A
Sbjct:     7 TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLA 66

Query:    69 VFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-I 127
              FPRILGHEA+                   +P F   C EC  C S K N C+ +    +
Sbjct:    67 RFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYL 126

Query:   128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
             S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+
Sbjct:   127 SNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVA 186

Query:   188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
             TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG+
Sbjct:   187 TGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGI 246

Query:   248 TEFVNSKNCGDKSVSQVLLSIYDL 271
             T+FVN   CG+K++S+V+  + D+
Sbjct:   247 TDFVNPALCGEKTISEVIREMTDV 270

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 140/256 (54%), Positives = 180/256 (70%)

Query:    12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
             GKPI C+AAI    GE LVI+++ VDPP ++EVR++I+CTSLCH+D+TFWK+   P + F
Sbjct:    11 GKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRF 70

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
             PRILGHEA+                   +P F   C EC  C+S K N C  +    IS 
Sbjct:    71 PRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISN 130

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                    SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct:   131 TRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTG 190

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             +GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T+
Sbjct:   191 IGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTD 250

Query:   250 FVNSKNCGDKSVSQVL 265
             F+N   CG+K +S+V+
Sbjct:   251 FINPTLCGEKKISEVI 266

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 142/256 (55%), Positives = 183/256 (71%)

Query:    12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
             GKPI+C+AA++  PGE LVI+E+ VDPP ++EVR++IICTSLCH+DV+F K+   P A F
Sbjct:    12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
             PRILGHEA+                   +P F   C EC  C+S K N C+ F    +S 
Sbjct:    72 PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                   TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct:   132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             +GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG T+
Sbjct:   192 IGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTD 251

Query:   250 FVNSKNCGDKSVSQVL 265
             F+NS  CG+  +S+V+
Sbjct:   252 FINSTLCGENKISEVI 267

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 117/262 (44%), Positives = 161/262 (61%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
             T G+ I+C+AA+A   G+PLVI+EV V PP  HEVR++I+ TSLCH+DV FW+ K    +
Sbjct:     3 TTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPL 62

Query:    70 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
             FPRI GHEA                    +P F  +C EC  C S++ N+C         
Sbjct:    63 FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTER 122

Query:   130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
               M  D  SRF  + G+ I+HF+  S+FSEYTV+    V K++P  P ++ C++SCG+ST
Sbjct:   123 GGMIHDGESRFS-INGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLST 181

Query:   189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
             G+GA    A  + G +V IFGLG++GL  AEGAR+ GA+RIIGVD  S++F+  K FGVT
Sbjct:   182 GLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVT 241

Query:   249 EFVNSKNCGDKSVSQVLLSIYD 270
             E VN K+  DK + QV+  + D
Sbjct:   242 ECVNPKD-HDKPIQQVIAEMTD 262

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 125/270 (46%), Positives = 165/270 (61%)

Query:     9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFP 67
             +T GK I C+AA+   P  PLVI E+ VDPP   EVRV+I+ +S+CH+D+  W    +  
Sbjct:     3 ETQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAE 62

Query:    68 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF---P 124
               FPRILGHEA+                   IP F  +C EC  C+ ++ NLC  +   P
Sbjct:    63 RAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDP 122

Query:   125 FK---ISPWMPRDQTSRFKD---LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR 178
              K   ++    R  T+  KD    + + I+HF++ S+F+EYTVLD A VVK+DP  P  +
Sbjct:   123 MKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQ 182

Query:   179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
               LLSCGVSTGVGAAW  ANV+ G +  +FGLGS+GLAVAEGAR  GA+RIIGVD  + K
Sbjct:   183 MSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASK 242

Query:   239 FEIGKRFGVTEFVNSKNCGDKSVSQVLLSI 268
             FE GK  GVT+F+N K+   K V Q++  I
Sbjct:   243 FEKGKLMGVTDFINPKDL-TKPVHQMIREI 271

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 117/261 (44%), Positives = 154/261 (59%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
             T GK I+C+AA+A   G+PL I+EV V PP +HEVRV+I  T +CH+D       D   +
Sbjct:     3 TTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPEGL 62

Query:    70 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
             FP ILGHE                     IP ++  C EC  C++ K NLC         
Sbjct:    63 FPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQ 122

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +  D TSRF   +G+ + HF+  S+FSEYTV+    + KVD   P ++ CLL CG+STG
Sbjct:   123 GLMPDNTSRFT-CKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTG 181

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              GAA  TA VE GST  +FGLG++GLAV  G +  GATRIIG+DV  +KFEI K+FG TE
Sbjct:   182 YGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATE 241

Query:   250 FVNSKNCGDKSVSQVLLSIYD 270
             FVN K+   K + +VL+ + D
Sbjct:   242 FVNPKD-HSKPIQEVLVELTD 261

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1165 zgc:63568 "zgc:63568" [Danio rerio (taxid:7955)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 118/261 (45%), Positives = 156/261 (59%)

Query:     9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW----KMK 64
             +T GK I+C+ A+A  PG+PL I++V V PP +HEVR++I  + +CHSD  +     KMK
Sbjct:     5 ETEGKVIKCKVAVAWEPGKPLSIEKVEVAPPKAHEVRIKIAASGVCHSDWAYLYDIAKMK 64

Query:    65 DFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFP 124
               P  FP +LGHE                     IP FL  C +C  C+S K NLC+   
Sbjct:    65 --PRPFPLVLGHEGAGVVESVGPGVTKVSIGDKVIPLFLPQCGQCERCQSPKTNLCTKNW 122

Query:   125 FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 184
              K    +  D TSR    + + +H F+ +S+FSEYTV+   +V K+ P  P +R CLL C
Sbjct:   123 EKTQQGVLADGTSRIT-CKNQQVHQFIGISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGC 181

Query:   185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
             GVSTG GAA  T  VE GST  +FGLG++GLA   G +  GA+RII VD+ S+KFEIGK 
Sbjct:   182 GVSTGYGAAVNTGKVESGSTCAVFGLGAVGLAAVMGCKAAGASRIIAVDINSDKFEIGKT 241

Query:   245 FGVTEFVNSKNCGDKSVSQVL 265
             FG TEFVN K+   KS+ +VL
Sbjct:   242 FGATEFVNHKD-HSKSIQEVL 261

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 110/251 (43%), Positives = 158/251 (62%)

Query:    15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
             I C AA+A   GEPLV++EV V PP   E+R++++CTSLC SD++ W+ +   ++ PRI 
Sbjct:    14 ITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQ---SLLPRIF 70

Query:    75 GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             GHEA                    +  F  +C  C  C S K N+C     +    M  D
Sbjct:    71 GHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLMHSD 130

Query:   135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
             Q +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+GAAW
Sbjct:   131 QKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 189

Query:   195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
               A+V+ GS+VVIFGLG++GL+VA+GA+L GA +I+GVD+   K E  K FGVT+F+NS 
Sbjct:   190 NVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDFINSN 249

Query:   255 NCGDKSVSQVL 265
             +  +  + QV+
Sbjct:   250 DLSEP-IPQVI 259

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-040426-1910 zgc:77938 "zgc:77938" [Danio rerio (taxid:7955)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 114/260 (43%), Positives = 153/260 (58%)

Query:     9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDF 66
             +T GK I+C+AA+A  PG+PL I++V V PP +HEVR++++ + +CH+D TF     K  
Sbjct:     2 ETEGKVIKCKAAVAWEPGKPLSIEDVEVAPPKAHEVRIKMVASGICHTDWTFLHEVGKTM 61

Query:    67 -PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPF 125
              P  FP +LGHE                     IP  +  C +C  C S K NLCS    
Sbjct:    62 NPQPFPVVLGHEGAGVVESVGPGVTKMAKGDKVIPLVVPQCGQCERCLSPKTNLCSKNWE 121

Query:   126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
             K    +  D TSR    + + +H F+++S+FSEYTV+   +V K+ P  P +R CLL CG
Sbjct:   122 KTQQCLLADGTSRIT-CKNQQVHQFIAISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGCG 180

Query:   186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             VSTG GAA  T  VE GST  +FGLG++GLA   G +  GATRII VD+ S+KFEI K F
Sbjct:   181 VSTGYGAAVNTGKVESGSTCAVFGLGAVGLAAVMGCKAAGATRIIAVDINSDKFEIAKTF 240

Query:   246 GVTEFVNSKNCGDKSVSQVL 265
             G TEF N K+   K + +VL
Sbjct:   241 GATEFANPKD-HSKPIQEVL 259

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FH04	ADHL7_ARATH	1, ., 1, ., 1, ., 1	0.6969	0.9392	0.6743	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921
4th Layer	1.1.1.1	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015543001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (395 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036847001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (485 aa)						•			0.899
	GSVIVG00035907001	SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (215 aa)						•			0.899
	GSVIVG00034061001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (450 aa)						•			0.899
	GSVIVG00028844001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (538 aa)						•			0.899
	GSVIVG00024617001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (485 aa)						•			0.899
	GSVIVG00024065001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (607 aa)						•			0.899
	GSVIVG00020768001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (531 aa)						•			0.899
	GSVIVG00019283001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (549 aa)						•			0.899
	GSVIVG00016425001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (362 aa)						•			0.899
	GSVIVG00016121001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (511 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-136
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-110
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-109
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-107
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	5e-91
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	4e-88
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	2e-85
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-82
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	2e-82
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	2e-80
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-62
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-58
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	2e-53
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	2e-47
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-42
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	6e-41
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	7e-41
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	7e-34
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-32
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-32
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	6e-32
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-31
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	4e-31
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	7e-31
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	3e-29
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	3e-29
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	6e-29
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	8e-29
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	6e-28
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	6e-28
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-27
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	4e-27
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	4e-27
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	3e-25
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	6e-25
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	1e-24
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	2e-24
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	5e-23
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	7e-23
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	1e-22
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	5e-22
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	7e-22
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-21
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	2e-20
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-20
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	6e-20
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	4e-19
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	3e-18
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	6e-18
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	7e-18
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	9e-18
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	1e-17
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	4e-17
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	5e-17
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	7e-17
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	2e-16
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	5e-16
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	6e-16
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	1e-15
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-14
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	8e-13
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	4e-12
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	4e-12
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	7e-12
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	8e-12
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	2e-10
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	3e-10
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	4e-10
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	5e-10
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	2e-09
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	2e-09
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-09
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	3e-09
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	1e-08
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	2e-08
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	3e-08
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	6e-08
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	9e-08
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	2e-07
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-07
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-07
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	3e-07
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	3e-07
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	4e-07
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	8e-07
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	8e-07
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-06
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-05
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	1e-04
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	3e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	4e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	5e-04
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	0.001
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	0.001
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	0.001
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	0.002
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	0.004

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  389 bits (1002), Expect = e-136
 Identities = 139/252 (55%), Positives = 177/252 (70%), Gaps = 3/252 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I C+AA+A   G+PLVI+EV V PP + EVR++I+ TSLCH+DV FW+ K    +FPRIL
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPR 133
           GHEA G+VESVGE V  +  GD V+P F  +C EC  C+S+K N+C           M  
Sbjct: 61  GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
           D  SRF    G+ I+HFV  S+FSEYTV+ +  V K++P  P ++ CLLSCGVSTG+GAA
Sbjct: 121 DGKSRFSI-NGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAA 179

Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           W  A V+ GSTV IFGLG++GLAVAEGAR+ GA+RIIGVD+   KFE  K+FGVTEFVN 
Sbjct: 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNP 239

Query: 254 KNCGDKSVSQVL 265
           K+  DK V +V+
Sbjct: 240 KDH-DKPVQEVI 250

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  322 bits (828), Expect = e-110
 Identities = 128/251 (50%), Positives = 172/251 (68%), Gaps = 4/251 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I+C+AA+A   G+PLVI+E+ V PP ++EVR++++ TS+CH+D+   +      +FP IL
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF-KATLFPVIL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G+VESVGE V  +  GD VIP F+  C EC  CRS K NLC  +    S  MP D
Sbjct: 60  GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMP-D 118

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            TSRF   +G+ I+HF+  S+FS+YTV+D  +V K+DP  P    CLL CG STG GAAW
Sbjct: 119 GTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            TA VE GSTV +FGLG++GL+   GA++ GA+RIIGVD+  +KFE  K FG T+F+N K
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237

Query: 255 NCGDKSVSQVL 265
           +  DK VS+V+
Sbjct: 238 DS-DKPVSEVI 247

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  321 bits (825), Expect = e-109
 Identities = 141/266 (53%), Positives = 185/266 (69%), Gaps = 8/266 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPA 68
           T GK I C+AA+A  PGEPLV++E+ VDPP   EVR++I+ TS+CH+D++ WK   +   
Sbjct: 4   TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQR 63

Query: 69  VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF---PF 125
            +PRILGHEA G+VESVGE V+ +  GD VIP F  +C +C  C+  K NLC  +   PF
Sbjct: 64  AYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPF 123

Query: 126 KISPWMPRDQTSRFKDLR-GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 184
           K    M  D  +RF     G+ I+HF++ S+F+EYTVLD A VVK+DP  P  +  LLSC
Sbjct: 124 KSV--MVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
           GVSTGVGAAW TANV+ GS+V IFGLG++GLAVAEGAR  GA++IIGVD+  EKFE GK 
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241

Query: 245 FGVTEFVNSKNCGDKSVSQVLLSIYD 270
            G+T+F+N K+  DK V + +  +  
Sbjct: 242 MGITDFINPKDS-DKPVHERIREMTG 266

Length = 381

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  314 bits (806), Expect = e-107
 Identities = 129/262 (49%), Positives = 173/262 (66%), Gaps = 14/262 (5%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I C+AA+A   G+PL I+EV V PP + EVR++I+ T +CH+D       D   +FP IL
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW---- 130
           GHE  G+VESVGE V  V  GD VIP +  +C EC  C+S K NLC     KI       
Sbjct: 61  GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQ----KIRATQGKG 116

Query: 131 -MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DIAHVVKVDPTVPPNRACLLSCGVST 188
            MP D TSRF   +G+ I+HF+  S+FSEYTV+ +I+ V K++P  P ++ CLL CGV+T
Sbjct: 117 LMP-DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEIS-VAKINPEAPLDKVCLLGCGVTT 173

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G GA   TA VE GSTV +FGLG++GLAV +GA+  GA+RIIG+D+  +KFE+ K+FG T
Sbjct: 174 GYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT 233

Query: 249 EFVNSKNCGDKSVSQVLLSIYD 270
           + VN K+  DK + QVL+ + D
Sbjct: 234 DCVNPKDH-DKPIQQVLVEMTD 254

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  274 bits (702), Expect = 5e-91
 Identities = 122/256 (47%), Positives = 172/256 (67%), Gaps = 5/256 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I CRAA+A   GE LV++EV V PP   E+R++++ TSLC SD++ W+ +   A+FPRI 
Sbjct: 11  ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPRIF 67

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHEA G+VES+GE V    +GD V+  F  +C  C  C S K N+C     +    M  D
Sbjct: 68  GHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSD 127

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
           Q +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+GAAW
Sbjct: 128 QKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 186

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
             A+V  GS+VVIFGLG++GL+VA+GA+L GA++IIGVD+  EK E  K FGVT+F+N  
Sbjct: 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPN 246

Query: 255 NCGDKSVSQVLLSIYD 270
           +   + + QV+  +  
Sbjct: 247 DL-SEPIQQVIKRMTG 261

Length = 378

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  266 bits (682), Expect = 4e-88
 Identities = 116/256 (45%), Positives = 154/256 (60%), Gaps = 3/256 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+   P +P  I+E+ V PP +HEVR++I+ T +C SD      K     
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGK-LVTP 59

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA G+VESVGE V  V  GD VIP F+  C +C  C + + NLC         
Sbjct: 60  FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            + +D TSRF   +G+ IHHF+  S+FSEYTV+D   V K+D   P  + CL+ CG STG
Sbjct: 120 GLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +GL+   G +  GA+RII VD+  +KF   K  G TE
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATE 238

Query: 250 FVNSKNCGDKSVSQVL 265
            +N ++   K + +VL
Sbjct: 239 CINPQDY-KKPIQEVL 253

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  259 bits (664), Expect = 2e-85
 Identities = 116/256 (45%), Positives = 154/256 (60%), Gaps = 4/256 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++ RAA+A   G+PL I+EV +DPP + EV VRI  T +CH+D       D P  FP +L
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G+VE+VGE V  V  GD VI  F  +C +C  C S K NLC A           D
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPD 119

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            T+R     G  ++H++  S+F+EYTV+    +VK+DP  P  +ACLL CGV+TG+GA  
Sbjct: 120 GTTRLSG-NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            TA VE G TV +FGLG +GLA  +GA+  GA RII VD+  EK E+ K+FG T FVN K
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK 238

Query: 255 NCGDKSVSQVLLSIYD 270
              D  V + ++ + D
Sbjct: 239 EVDD--VVEAIVELTD 252

Length = 366

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  251 bits (644), Expect = 1e-82
 Identities = 110/255 (43%), Positives = 154/255 (60%), Gaps = 5/255 (1%)

Query: 17  CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           C+AA+    G+PL I+E+ V PP + EVR++++ T +CH+D+     K  P   P ILGH
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKL-PTPLPVILGH 59

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS-AFPFKISPWMPRDQ 135
           E  G+VES+G  V  +  GD VIP F   C +C  C + + NLCS +        M  D 
Sbjct: 60  EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS-DG 118

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
           TSRF   +G+ IHHF+  S+F+EYTV+    + K+DP  P  + CL+ CG STG GAA  
Sbjct: 119 TSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVN 177

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           TA V  GST  +FGLG +GL+V  G +  GA+RII VD+  +KFE  K+ G TE +N ++
Sbjct: 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD 237

Query: 256 CGDKSVSQVLLSIYD 270
             DK + +VL  + D
Sbjct: 238 -QDKPIVEVLTEMTD 251

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  251 bits (644), Expect = 2e-82
 Identities = 106/238 (44%), Positives = 134/238 (56%), Gaps = 3/238 (1%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+    G+PL I+EV +D P   EV VRI    LCHSD+      D PA  P +LGHE
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVT-GDLPAPLPAVLGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             GVVE VG  V GV  GD V+  ++  C  C  C   + NLC      I      D T 
Sbjct: 61  GAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDL-GAGILGGQLPDGTR 119

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           RF    GE +     + +F+EYTV+  A VVK+D  +P +RA LL CGV+TGVGA   TA
Sbjct: 120 RF-TADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTA 178

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            V  G TV + G G +GL   +GAR+ GA+RII VD + EK E+ +RFG T  VN+  
Sbjct: 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE 236

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  246 bits (630), Expect = 2e-80
 Identities = 119/253 (47%), Positives = 157/253 (62%), Gaps = 2/253 (0%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+A A G+PL I+EV V+ P   EV VRI+ T +CH+D       D   VFP ILGHE
Sbjct: 3   RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G+VE+VGE V  V  GD VIP + A+C EC  C S K NLC A        +  D TS
Sbjct: 63  GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTS 122

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           RF    G+ I+H++  S+FSEYTV+    + K++P  P    CLL CGV+TG+GA   TA
Sbjct: 123 RFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            VE G TV +FGLG IGL+V +GAR+  A+RII +D+   KFE+ K+ G T+ VN  +  
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPND-Y 240

Query: 258 DKSVSQVLLSIYD 270
           DK + +V++ I D
Sbjct: 241 DKPIQEVIVEITD 253

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  200 bits (512), Expect = 2e-62
 Identities = 92/244 (37%), Positives = 128/244 (52%), Gaps = 5/244 (2%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++  AA+   PG P V+++V +D P   EV VRI+ T +CH+D+   +    P   P +L
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVV-RDGGLPTPLPAVL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC-SAFPFKISPWMPR 133
           GHE  GVVE+VG  V G+  GD V+  F A C EC  C S     C + FP   S   P 
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRP- 117

Query: 134 DQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
           D ++      G  +H HF   SSF+ Y V+   +VVKVD  VP      L CG+ TG GA
Sbjct: 118 DGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGA 177

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
                    GS++ +FG G++GLA    A++ G T II VD++  + E+ K  G T  +N
Sbjct: 178 VLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN 237

Query: 253 SKNC 256
            K  
Sbjct: 238 PKEE 241

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  190 bits (485), Expect = 1e-58
 Identities = 89/239 (37%), Positives = 131/239 (54%), Gaps = 7/239 (2%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK--DFPA-VFPRIL 74
           +AA+   PG+P  ++E+ +D P + EV V+++ + LCHSD     +   D P   +P + 
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSD---EHLVTGDLPMPRYPILG 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  GVV  VG  V GV  GD V+  F+  C  C  C +   NLC      ++     D
Sbjct: 60  GHEGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISD 119

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            T RF    G+ +     + +FSEYTV+  A VVK+D  +P ++ACL+ CGV TG G+A 
Sbjct: 120 GTYRFH-ADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAV 178

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
             A+V  G TVV+ G+G +G+   +GA + GA ++I VD +  K E   +FG T    S
Sbjct: 179 NIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAFAS 237

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  177 bits (451), Expect = 2e-53
 Identities = 97/255 (38%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 18  RAAIATAPG--------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           RAA+    G         PLVI+EV +DPP   EV V+I    LCHSD++     D P  
Sbjct: 2   RAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVIN-GDRPRP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHEA GVV  VGE V  +  GD V+  F+  C  C  C   +  LC         
Sbjct: 61  LPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGA 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                   R + LRG  I+H + VS+F+EY V+    VVK+D  VP   A L  C V TG
Sbjct: 121 GTLLSGGRRLR-LRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           VGA   TA V  G +V + GLG +GL+   GA   GA++++ VD+  +K  + +  G T 
Sbjct: 180 VGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA 239

Query: 250 FVNSKNCGDKSVSQV 264
            VN+ +    +V QV
Sbjct: 240 TVNAGD--PNAVEQV 252

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  161 bits (409), Expect = 2e-47
 Identities = 85/247 (34%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           R  IA + G P+ ++ ++V  P   EV V I    +CH+D+ + +       FP +LGHE
Sbjct: 3   RGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHY-REGGINDEFPFLLGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
           A GVVE+VGE V  V  GD V+ ++ A C +C  C+  +   C         +   + T 
Sbjct: 62  AAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYC---------FDTHNATQ 112

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +     G  +   + + +F+E T++      KVDP   P  A LL CGV  G+GAA  T 
Sbjct: 113 KMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTG 172

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            V+ G +V + G G +G A   GA L GA++II VD+   K E  + FG T  VNS   G
Sbjct: 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS--G 230

Query: 258 DKSVSQV 264
              V  +
Sbjct: 231 TDPVEAI 237

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  148 bits (375), Expect = 2e-42
 Identities = 77/242 (31%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+   P  PL I+E+ V  P   E+ +R+    +CHSD+   K  + P   P +LGHE
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLK-GELPFPPPFVLGHE 60

Query: 78  AIGVVESVGENVDGVV---EGDVVIPHFLADCTECVGCRSKKGNLC-SAFPFKISPWMPR 133
             G V  VG NV+       GD V+  F+  C +C  C   K NLC   F +        
Sbjct: 61  ISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLY 120

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
           D T+R   L G  ++ + S+   +EY V+    +  +  ++    + +L C   T  GA 
Sbjct: 121 DGTTRLFRLDGGPVYMY-SMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
              A+V  G TV + G+G +G +  + A+  GA+ II VDV  EK    K  G T  VN+
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNA 239

Query: 254 KN 255
             
Sbjct: 240 AK 241

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  142 bits (359), Expect = 6e-41
 Identities = 61/214 (28%), Positives = 85/214 (39%), Gaps = 28/214 (13%)

Query: 43  EVRVRIICTSLCHSDVTFWK-MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
           EV VR+    LC +D+   +     P   P ILGHE  GVV  VG  V GV  GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
               C  C  CR                                 I        F+EY V
Sbjct: 61  PNLGCGTCELCRELCPGGG--------------------------ILGEGLDGGFAEYVV 94

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +   ++V +   +    A LL   ++T   A  R   ++ G TV++ G G +GL  A+ A
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154

Query: 222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           +  GA R+I  D   EK E+ K  G    ++ K 
Sbjct: 155 KAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE 187

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  143 bits (364), Expect = 7e-41
 Identities = 78/266 (29%), Positives = 117/266 (43%), Gaps = 30/266 (11%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPR 72
            +  +AA+    G+PL I+EV V  P   EV +++    +CH+D+   K  D+P    P 
Sbjct: 1   MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAK-GDWPVPKLPL 59

Query: 73  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           I GHE +G V  VGE V G+  GD V +   +  C EC  CRS   NLC           
Sbjct: 60  IPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLC----------- 108

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                   + + G T         ++EY V+   +VVK+   +    A  L C   T   
Sbjct: 109 ------PNQKITGYTTD-----GGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR 157

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A  + ANV+ G  V + G G +G    + A+  GA  +I +    EK E+ K+ G    +
Sbjct: 158 AL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVI 215

Query: 252 NSKNCGDKSVSQVLLSIYDLPLLTIS 277
           NS    D    + +  I D  + T+ 
Sbjct: 216 NSS---DSDALEAVKEIADAIIDTVG 238

Length = 339

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  125 bits (316), Expect = 7e-34
 Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 19/237 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV-TFWKMKDFPAVFPRILGH 76
           +AA+    G  + ++E     P   +V +R+  T +C SD+  +   + F      ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G V  VG  V G   GD V+      C  C  CR+ + NLC    F     +     
Sbjct: 62  EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGL----- 115

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                + G           F+EY  +     +   P      A  L+  ++T        
Sbjct: 116 --GGGIDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           A V  G TVV+ G G IGL     A+L GA+ +I VD   E+ E+ K  G  + V +
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN 220

Length = 350

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  121 bits (307), Expect = 2e-32
 Identities = 83/257 (32%), Positives = 115/257 (44%), Gaps = 39/257 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDV-TFWKMKDFPAVFP-RIL 74
           +A      G+   I++ I    PN  +  VR    + C SDV T W     P      IL
Sbjct: 2   KAFAMLGIGKVGWIEKPIPVCGPN--DAIVRPTAVAPCTSDVHTVWG--GAPGERHGMIL 57

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVIPHFLAD--CTECV-GCRSKKGNLCSAFPFKISPW 130
           GHEA+GVVE VG  V     GD V++P    D        G  S+ G +   + F     
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF----- 112

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYT-VLDI-AHVVKVDPTVPPNRACLLSCGVST 188
                 S FKD              F+EY  V D  A++  +   +   +A +L   +ST
Sbjct: 113 ------SNFKD------------GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMST 154

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G   A   AN+++G TV +FG+G +GL    GARL GA RII V     + E+ K +G T
Sbjct: 155 GFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGAT 213

Query: 249 EFVNSKNCGDKSVSQVL 265
           + V+ KN     V Q+L
Sbjct: 214 DIVDYKNGD--VVEQIL 228

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  121 bits (305), Expect = 2e-32
 Identities = 72/230 (31%), Positives = 98/230 (42%), Gaps = 24/230 (10%)

Query: 26  GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVES 84
              LV++EV V  P   EV V++    +CHSD+             P  LGHE  G V  
Sbjct: 11  KGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVE 70

Query: 85  VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG 144
           VG  V     GD V    +  C  C  CR  +GNLC             +Q      + G
Sbjct: 71  VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQGMPGLGIDG 118

Query: 145 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGST 204
                      F+EY V+    +V V   VP  +A + +  V T   A  R   V+ G T
Sbjct: 119 ----------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGET 168

Query: 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
           V++ GLG +GL   + A+  GA  +I VD+  EK E+ K  G  E +NS 
Sbjct: 169 VLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEKLELAKELGADEVLNSL 217

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  119 bits (302), Expect = 6e-32
 Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 36/240 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A +   PGE L ++EV V  P   EV +++    +C +D+  ++  +F A  P + GHE
Sbjct: 2   KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYE-GEFGAAPPLVPGHE 59

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             GVV +VG  V G   GD   V P+    C EC  CR  + NLC               
Sbjct: 60  FAGVVVAVGSKVTGFKVGDRVAVDPNIY--CGECFYCRRGRPNLCENL------------ 105

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
                   G T +       F+EY V+    V K+   +    A L   LSC V      
Sbjct: 106 -----TAVGVTRN-----GGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH----- 150

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
                 ++ G +V++FG G IGL +A+  +L GA+R+   +   EK E+ K+ G TE V+
Sbjct: 151 GLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVD 210

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  119 bits (300), Expect = 2e-31
 Identities = 74/239 (30%), Positives = 98/239 (41%), Gaps = 25/239 (10%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+    GEPL I EV    P    V V +    +C SD   W+  D     P + GHE
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             GVV  VGE+V     GD V   F+  C  C  CR+   N+C              Q  
Sbjct: 62  FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVC------------EHQ-- 107

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                       F    SF+EY  +  A V  V++   V    A  L C  +T   A   
Sbjct: 108 --------VQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVH 159

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            A V+ G  V + G G +GL+    A   GA R+I VD+  +K E+ +  G    VN+ 
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS 217

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  118 bits (297), Expect = 4e-31
 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 30/246 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A + T PG+ L  +++    P   EV V++    +C SD+  + +       P +LGHE
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRY-LGTGAYHPPLVLGHE 59

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G VE VG  VD +  GD   V P  L  C +C  C+  + +LCS +            
Sbjct: 60  FSGTVEEVGSGVDDLAVGDRVAVNP--LLPCGKCEYCKKGEYSLCSNY------------ 105

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                D  G          +F+EY  +   +++K+   V    A ++    +  + A   
Sbjct: 106 -----DYIGSRRD-----GAFAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL 154

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            A + +G TVV+ G G+IGL   +  ++ GA R+I VD+  EK  + +  G  + +N K 
Sbjct: 155 -AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE 213

Query: 256 CGDKSV 261
              + V
Sbjct: 214 EDVEKV 219

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  117 bits (295), Expect = 7e-31
 Identities = 73/249 (29%), Positives = 107/249 (42%), Gaps = 40/249 (16%)

Query: 17  CRAAIATAPGE-PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRI 73
            +AA+    GE P  + +V V  P   EV V++  + +CH+D+      D+P     P I
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALG-DWPVKPKLPLI 59

Query: 74  LGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE  GVV +VG  V G+  GD V +      C +C  CR+    LC            
Sbjct: 60  GGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN---------- 109

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
           +  +    D             +F+EY + D  +V  +   +   +A  L C   T V  
Sbjct: 110 QKNSGYTVD------------GTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVT-VYK 156

Query: 193 AWRTANVEVGSTVVIFG----LGSIGL--AVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           A + A ++ G  VVI G    LG +G+  A A G       R+I +DV  EK E+ K  G
Sbjct: 157 ALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGL------RVIAIDVGDEKLELAKELG 210

Query: 247 VTEFVNSKN 255
              FV+ K 
Sbjct: 211 ADAFVDFKK 219

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  113 bits (284), Expect = 3e-29
 Identities = 64/246 (26%), Positives = 99/246 (40%), Gaps = 36/246 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+   P + + ++EV V  P   EV V++    +C +DV   +        PRILGHE
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G +  VG+ V G   GD V       C EC  C     N+C                 
Sbjct: 61  IAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMC----------------- 103

Query: 138 RFKDLRGETIHHFVSVSSFSEYTV-----LDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
              + +            F+EY       +    V+K+   V    A L   L+C +   
Sbjct: 104 --PNYKKFGNL---YDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI--- 155

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              A R A ++ G TV++ G G IGL  A  A+  GA ++I  D+   + E  K+ G   
Sbjct: 156 --NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADY 213

Query: 250 FVNSKN 255
            +++  
Sbjct: 214 TIDAAE 219

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  113 bits (284), Expect = 3e-29
 Identities = 72/264 (27%), Positives = 104/264 (39%), Gaps = 28/264 (10%)

Query: 17  CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
            RAA+ T PG+PL I EV +       V VR+    +C SDV     +      P ILGH
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60

Query: 77  EAIGVVESVGENVD------GVVEGD-VVIPHFLADCTECVGCRSKKGNLC-SAFPFKIS 128
           E +G V ++G  V        +  GD V        C  C  C       C +   +   
Sbjct: 61  EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCENRKKYGHE 119

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVS 187
                        L G           ++E+  L     +V+V   VP   A   +C ++
Sbjct: 120 ASCDDPH------LSG----------GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALA 163

Query: 188 TGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           T V AA   A  V  G TVV+ G G +GL     A+L GA R+I +D   E+ E+ + FG
Sbjct: 164 T-VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFG 222

Query: 247 VTEFVNSKNCGDKSVSQVLLSIYD 270
               ++     D     ++  I  
Sbjct: 223 ADATIDIDELPDPQRRAIVRDITG 246

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  112 bits (282), Expect = 6e-29
 Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 31/240 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A +   PG  L + ++    P + EV VR+    +C SD+  +  ++  A +PRILGHE
Sbjct: 2   KALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G V  VGE V G+  GD  VV P+    C EC  CR  + N C      +        
Sbjct: 61  LSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCE----NLQ------- 107

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                 + G  +H       F+EY V+    ++  +  +  ++A L+   ++ G  A  R
Sbjct: 108 ------VLG--VH---RDGGFAEYIVVPADALLVPE-GLSLDQAALVEP-LAIGAHAVRR 154

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            A V  G TV++ G G IGL V + A+  GA R+I VD+  E+ E  +  G  + +N  +
Sbjct: 155 -AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD 212

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  111 bits (281), Expect = 8e-29
 Identities = 77/261 (29%), Positives = 108/261 (41%), Gaps = 43/261 (16%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM---KDFPAVFPRILG 75
           AA+   PG+ L ++E  +  P   EV VR+    +C SDV ++K     DF    P +LG
Sbjct: 1   AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLG 59

Query: 76  HEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           HE+ G V +VG  V  +  GD V     +P     C  C  C+S + NLC    F  +P 
Sbjct: 60  HESAGTVVAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMRFAATP- 113

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 187
            P D T                      Y         K+   V      L   LS GV 
Sbjct: 114 -PVDGT-------------------LCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGV- 152

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
                A R A V  G TV++FG G IGL  A  A+  GAT+++  D+   + E  K  G 
Sbjct: 153 ----HACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGA 208

Query: 248 TEFVNSKNCGDKSVSQVLLSI 268
           T  VN +       ++ +  +
Sbjct: 209 THTVNVRTEDTPESAEKIAEL 229

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  109 bits (274), Expect = 6e-28
 Identities = 75/244 (30%), Positives = 110/244 (45%), Gaps = 27/244 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGH 76
           +AAI   P +PL I+EV    P   EV +++    +C+ D+ FWK   FP   +P ILGH
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWK-GFFPRGKYPLILGH 60

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G VE VGE V+    GD VI ++   C +C  C S + NLC                
Sbjct: 61  EIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                 R    +       F+EY  +    +VK+   V    A L +C V T V A  + 
Sbjct: 105 ------RNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KR 157

Query: 197 ANVEVGSTVVI-FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           A V+ G TV++    G +G+   + A+  GA R+I V    EK +I K  G    ++   
Sbjct: 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSK 216

Query: 256 CGDK 259
             + 
Sbjct: 217 FSED 220

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  109 bits (275), Expect = 6e-28
 Identities = 66/218 (30%), Positives = 94/218 (43%), Gaps = 22/218 (10%)

Query: 41  SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIP 100
            H+  VR+  TS+C SD+  ++     A    ILGHE +G V  VG +V  +  GD V  
Sbjct: 25  PHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSV 84

Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
             +  C  C  CR      C    +               D               +EY 
Sbjct: 85  PCITFCGRCRFCRRGYHAHCENGLWGWKL-------GNRID------------GGQAEYV 125

Query: 161 VLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
            +  A  ++ K+   +P   A +LS  + TG   A   A ++ GSTV + G G +GL   
Sbjct: 126 RVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAV 184

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
            GARL GA RII VD   E+ ++ K  G T+ +N KN 
Sbjct: 185 AGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNG 222

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  107 bits (270), Expect = 3e-27
 Identities = 65/255 (25%), Positives = 94/255 (36%), Gaps = 36/255 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW------------KMKD 65
           +AA    PG+PL   E+    P   EV V++    +CHSD+  W             + D
Sbjct: 2   KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61

Query: 66  FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125
                P +LGHE +G V +VG +   V  GD V+ +    C EC  C +   NLC+    
Sbjct: 62  RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCA---- 117

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                         K               ++EY ++  +  +     + P  A  L+C 
Sbjct: 118 --------------KGRALGIFQD----GGYAEYVIVPHSRYLVDPGGLDPALAATLACS 159

Query: 186 VSTGVGAAWRTANVEVGST-VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
             T   A  +     V    VVI G G +GL      +  G   II VD+   K E  K 
Sbjct: 160 GLTAYSAV-KKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218

Query: 245 FGVTEFVNSKNCGDK 259
            G    VN  +    
Sbjct: 219 AGADVVVNGSDPDAA 233

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  107 bits (269), Expect = 4e-27
 Identities = 73/255 (28%), Positives = 105/255 (41%), Gaps = 35/255 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +AA     G+PL +++V V  P   +V VR+    +CHSD+           P   P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G VE VG  VDG+ EGD V+ H    C  C  CR  + N C              
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCEN------------ 109

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
             +RF    G           F+EY ++    +VK+   + P  A  L+    T   A  
Sbjct: 110 --ARF---PGIGTD-----GGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVK 159

Query: 195 RTANV-EVGSTVVIF---GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           +     + GSTVV+    GLG I + +    R      +I VD   E  ++ +R G    
Sbjct: 160 KALPYLDPGSTVVVIGVGGLGHIAVQI---LRALTPATVIAVDRSEEALKLAERLGADHV 216

Query: 251 VNSKNCGDKSVSQVL 265
           +N+    D  V +V 
Sbjct: 217 LNA---SDDVVEEVR 228

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  107 bits (269), Expect = 4e-27
 Identities = 59/237 (24%), Positives = 95/237 (40%), Gaps = 23/237 (9%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL-GHEAIGVVESVGE 87
           + + E  V  P   EV +R+  + LC SD+ ++        +  ++ GHE  GVV +VG 
Sbjct: 12  VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGP 71

Query: 88  NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
            V     GD V+ +    C  C  CR     LC++                  +  G   
Sbjct: 72  GVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYG-----------WNRDG--- 117

Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 207
                    +EY ++    ++ +   +      LL CG+ T    A R   V    TV++
Sbjct: 118 -------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YHALRRVGVSGRDTVLV 169

Query: 208 FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQV 264
            G G +GL     AR  GA  +IGVD   E+ E+ K  G    +NS     + + ++
Sbjct: 170 VGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIREL 226

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score =  101 bits (255), Expect = 3e-25
 Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 22/227 (9%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILGHEAIGVVESV 85
           L ++E     P   EVRVR+    +C SD+ +++   F  V    P +LGHE  GVVE+V
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV 68

Query: 86  GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
           G  V G+  G  V  +    C  C  CR+ + NLC    F  S         RF  ++G 
Sbjct: 69  GPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGS-------AMRFPHVQG- 120

Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205
                     F EY V+D +  V +   +   RA  L+  ++  + A  R  ++  G  V
Sbjct: 121 ---------GFREYLVVDASQCVPLPDGLSLRRAA-LAEPLAVALHAVNRAGDL-AGKRV 169

Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
           ++ G G IG  V   AR  GA  I+  D+      + +  G  E VN
Sbjct: 170 LVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVN 216

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  101 bits (253), Expect = 6e-25
 Identities = 68/239 (28%), Positives = 103/239 (43%), Gaps = 27/239 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGH 76
           +A I     +   I+EV    P   EV +++    LC+ D+   +   +P + +P ILGH
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQ-GFYPRMKYPVILGH 60

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G VE VGENV G   GD V     A    C  CRS +   C                
Sbjct: 61  EVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            + +   GE +  F     F+EY  + +  +VKV P V    A ++ C          R 
Sbjct: 105 -KNRLGYGEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RR 157

Query: 197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
           A V+ G TV++ G  G +G+   + A+  GA ++I V     K +I  ++     V SK
Sbjct: 158 AGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKYADYVIVGSK 215

Length = 334

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  100 bits (250), Expect = 1e-24
 Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 25/242 (10%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+  A G PL  +EV V  P   EV ++I    +CH+D+   +     + +P + GHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G V  VG  V+G   GD V +   +  C  C  CR    NLC                
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKA------------- 107

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                  G     + +   ++EY V D  + V +   +P  +A  L C   T V +A R 
Sbjct: 108 ----VNTG-----YTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGIT-VYSALRD 157

Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
           A    G  V + G+G +G    + AR  G    + +    +K E+ ++ G  E V+S   
Sbjct: 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAE 216

Query: 257 GD 258
            D
Sbjct: 217 LD 218

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 59/225 (26%), Positives = 87/225 (38%), Gaps = 41/225 (18%)

Query: 18  RAAIATAPG----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAV 69
           +A +   PG     PL + EV V  P   EV +++    +C +D+            P  
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLP----PPK 57

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
            P I GHE +G VE+VG  V     GD V +P   + C EC  CRS + NLC    F   
Sbjct: 58  LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT-- 115

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
                          G T+        ++EY V D      +        A  L C    
Sbjct: 116 ---------------GYTVD-----GGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGII 155

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATR 228
           G   A + A ++ G  + ++G G+       +A  +GA +   TR
Sbjct: 156 GYR-ALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 96.5 bits (241), Expect = 5e-23
 Identities = 72/238 (30%), Positives = 107/238 (44%), Gaps = 34/238 (14%)

Query: 30  VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP-RILGHEAIGVVESVGEN 88
           V D  I DP    +  VR+  T++C SD+  +     P +    ILGHE +GVVE VG  
Sbjct: 17  VPDPKIEDP---TDAIVRVTATAICGSDLHLY-HGYIPGMKKGDILGHEFMGVVEEVGPE 72

Query: 89  VDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
           V  +  GD VV+P  +A C EC  C+    + C             D T+   ++     
Sbjct: 73  VRNLKVGDRVVVPFTIA-CGECFYCKRGLYSQC-------------DNTNPSAEMAKLYG 118

Query: 148 HHFVSVSSFS-----------EYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAW 194
           H    +  +S           EY  +  A V   K+   +   +A  LS  + TG  AA 
Sbjct: 119 HAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA- 177

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
             A V+ G TV ++G G +GL  A  A+L GA R+I +D + E+ E+ +     E +N
Sbjct: 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETIN 235

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 95.1 bits (237), Expect = 7e-23
 Identities = 64/237 (27%), Positives = 98/237 (41%), Gaps = 32/237 (13%)

Query: 18  RAAIATAPGEPLV-IDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           +A + T PG   V + EV    P   EV +++    +C SD+  +K    P   P +LGH
Sbjct: 2   KALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGH 61

Query: 77  EAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           E  G +  VG +V+G   GD VV     + C  C  CR    NLC               
Sbjct: 62  EFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPH------------- 108

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
               +   G           F+EY ++    + ++   +    A L   L+  V     A
Sbjct: 109 ----RKGIGTQAD-----GGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----A 155

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII-GVDVISEKFEIGKRFGVT 248
               + +  G TVV+FG G IGL  A+ A+L GAT ++ G +    + ++ K  G  
Sbjct: 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGAD 212

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 89.6 bits (223), Expect = 1e-22
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 22/129 (17%)

Query: 42  HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
            EV VR+    +C SD+  ++ +  P   P ILGHE  G+VE VG  V G+  GD V+ +
Sbjct: 2   GEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVY 61

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            L  C +C  CR  + NLC                       G  +        F+EY V
Sbjct: 62  PLIPCGKCAACREGRENLCPN-----------------GKFLGVHLD-----GGFAEYVV 99

Query: 162 LDIAHVVKV 170
           +   ++V +
Sbjct: 100 VPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 93.4 bits (233), Expect = 5e-22
 Identities = 62/250 (24%), Positives = 90/250 (36%), Gaps = 58/250 (23%)

Query: 31  IDEVIVDPPNSHEVRVRIICTSLCHSDV-------TFWKMKDFP---------AVFPRIL 74
           ++EV   P    EV++++    +C SD+        F      P            P  L
Sbjct: 14  VEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIF-----IPTEGHPHLTGETAPVTL 68

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  GVV  VG  V G   GD  VV P     C  C  C+    NLC +  F       
Sbjct: 69  GHEFSGVVVEVGSGVTGFKVGDRVVVEPTI--KCGTCGACKRGLYNLCDSLGF------- 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSS--FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 187
                             +      F+EY V+   HV K+   VP   A L   L+    
Sbjct: 120 ----------------IGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH 163

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
                A R +  + G T ++ G G IGL      +  GA++II  +    + E+ +  G 
Sbjct: 164 -----AVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA 218

Query: 248 TEFVNSKNCG 257
           T  ++     
Sbjct: 219 TIVLDPTEVD 228

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 93.1 bits (232), Expect = 7e-22
 Identities = 69/227 (30%), Positives = 100/227 (44%), Gaps = 35/227 (15%)

Query: 46  VRIICTSLCHSDVTFWKMKDFPAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104
           V+++ T++C +D+   K  D P V P RILGHE +GVVE VG  V     GD V+   ++
Sbjct: 30  VKMLKTTICGTDLHILK-GDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCIS 88

Query: 105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH----HFVSV--SSFSE 158
            C  C  CR    + C +       W           + G  I      +V +  +  S 
Sbjct: 89  SCGTCGYCRKGLYSHCES-----GGW-----------ILGNLIDGTQAEYVRIPHADNSL 132

Query: 159 YTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
           Y         K+   V    A +LS  + TG         V+ G TV I G G +GLA  
Sbjct: 133 Y---------KLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAAL 183

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVL 265
             A+L   ++II VD+   + E+ K+ G T  VNS      ++ QVL
Sbjct: 184 LTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK--GDAIEQVL 228

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 92.6 bits (231), Expect = 1e-21
 Identities = 58/243 (23%), Positives = 90/243 (37%), Gaps = 34/243 (13%)

Query: 22  ATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGV 81
           A      L        P    +V ++I    +CHSD+   + +  P  +P + GHE +G+
Sbjct: 5   ARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGI 64

Query: 82  VESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK 140
           V +VG  V     GD V      D C  C  C+S +   C           P+   +   
Sbjct: 65  VVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYC-----------PKGVVTYNG 113

Query: 141 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE 200
                TI        ++++ V+D   V K+   +    A  L C   T V +  +   V 
Sbjct: 114 KYPDGTITQ----GGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGIT-VYSPLKRNGVG 168

Query: 201 VGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVN 252
            G  V + G+G +G      A A GA          V   S    K E   + G  EF+ 
Sbjct: 169 PGKRVGVVGIGGLGHLAVKFAKALGAE---------VTAFSRSPSKKEDALKLGADEFIA 219

Query: 253 SKN 255
           +K+
Sbjct: 220 TKD 222

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 78/259 (30%), Positives = 115/259 (44%), Gaps = 41/259 (15%)

Query: 18  RAAIATAPGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           RA +   PG+     V D VI +P    +  +R++ T +C SD+  ++    P   P  +
Sbjct: 2   RATVIHGPGDIRVEEVPDPVIEEP---TDAVIRVVATCVCGSDLWPYRGVS-PTRAPAPI 57

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE +GVVE VG  V  V  GD VI  F      C  CR+     C              
Sbjct: 58  GHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC-------------- 103

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVDPTVPPNRACL------LSCGV 186
                  + G     FV      EY  + +A   +VKV P  P +   L      LS  +
Sbjct: 104 -------VHGGFWGAFVD-GGQGEYVRVPLADGTLVKV-PGSPSDDEDLLPSLLALSDVM 154

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
            TG  AA  +A V  GSTVV+ G G++GL     A+  GA RII +    ++  + + FG
Sbjct: 155 GTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG 213

Query: 247 VTEFVNSKNCGDKSVSQVL 265
            T+ V  +  G+++V++V 
Sbjct: 214 ATDIVAER--GEEAVARVR 230

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 46/250 (18%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA---VFPRIL 74
           +A + T  G    + EV V  P   EV ++++  S+C +DV  ++  ++       P I 
Sbjct: 2   KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIF 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           GHE  G V  VGE V  V  GD V     I      C +C  CR+   ++C         
Sbjct: 62  GHEFAGEVVEVGEGVTRVKVGDYVSAETHIV-----CGKCYQCRTGNYHVC--------- 107

Query: 130 WMPRDQTSRF--KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                Q ++    D  G           F+EY V+   ++ K D  +PP  A      + 
Sbjct: 108 -----QNTKILGVDTDG----------CFAEYVVVPEENLWKNDKDIPPEIA-----SIQ 147

Query: 188 TGVGAAWRTANVE--VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             +G A  T       G +V+I G G IGL     A+  GA+ +I  D    + E+ K+ 
Sbjct: 148 EPLGNAVHTVLAGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM 207

Query: 246 GVTEFVNSKN 255
           G    +N + 
Sbjct: 208 GADVVINPRE 217

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 87.0 bits (216), Expect = 6e-20
 Identities = 51/235 (21%), Positives = 79/235 (33%), Gaps = 61/235 (25%)

Query: 23  TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAI 79
           T PG    ++E     P   +V VR+    +C SD+  +   +        P   GHE  
Sbjct: 2   TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGW 60

Query: 80  GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRF 139
           G V ++G  V G+  GD V                                         
Sbjct: 61  GRVVALGPGVRGLAVGDRVA---------------------------------------- 80

Query: 140 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP--PNRACLLSCGVSTGVGAAWRTA 197
                      +S  +F+EY + D  H V +   +         L C ++      +R  
Sbjct: 81  ----------GLSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRG 125

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
            +  G TV + G G IGL   + A   GA R+I +D    +  + +  G TE V 
Sbjct: 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVT 180

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 85.3 bits (211), Expect = 4e-19
 Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 38/242 (15%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF-----WKMKDFPAVFPRI 73
           A + T PG    + EV V  P   EV ++++ TS+C +DV       W         P++
Sbjct: 1   ALMKTKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKP--PQV 58

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           +GHE  G V  +G  V+G+  GD V       C +C  CR  + ++C             
Sbjct: 59  VGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC------------- 105

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGV 190
                    +   I    +   F+EY V+   ++ K   ++PP  A +   L   V T +
Sbjct: 106 ---------QNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL 156

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
                 A    G +V++ G G IGL     A+  GA  +I  D    + E+ K+ G T  
Sbjct: 157 ------AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYV 210

Query: 251 VN 252
           VN
Sbjct: 211 VN 212

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 48/249 (19%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF-----WKMKDFPAVFPR 72
           +A +       L + +V V  P  ++V +++  T++C +DV       W  K  P   P 
Sbjct: 2   KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV--PM 59

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIP--HFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           ++GHE +G V  VG  V G   GD V    H +  C  C  CR+ + +LC          
Sbjct: 60  VVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIV--CGHCRNCRAGRRHLC---------- 107

Query: 131 MPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                    ++ +G      V V+   +F+EY V+   +V K+   +P + A +      
Sbjct: 108 ---------RNTKG------VGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFD---- 148

Query: 188 TGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
              G A  TA   ++ VG  V+I G G IG+  A  A+  GA  ++  DV   + E+ ++
Sbjct: 149 -PFGNAVHTALSFDL-VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206

Query: 245 FGVTEFVNS 253
            G T  VN 
Sbjct: 207 MGATRAVNV 215

Length = 341

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 81.9 bits (203), Expect = 6e-18
 Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 34/220 (15%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           +A +    G P  L   ++    P   EV VR+   +L H D+   +      +  P IL
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVVE+VG  V  V  G  V+ +    C  C  C + + NLC+ +           
Sbjct: 62  GSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQY----------- 110

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                  + GE +        ++EY  +   +++ +   +    A        T    AW
Sbjct: 111 ------GILGEHVDGG-----YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLT----AW 155

Query: 195 RT----ANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRI 229
                 A +  G TV++ G GS +G A  + A+L GAT I
Sbjct: 156 HMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVI 195

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 81.8 bits (202), Expect = 7e-18
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 39/230 (16%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVF-------PRILGHEAIGVVESVGENVDGVVEG 95
           +V V++  + LC SD+        P +F       P  LGHE  G VE+VG  VD +  G
Sbjct: 27  DVLVKVASSGLCGSDI--------PRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPG 78

Query: 96  DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSS 155
           D V    L  C  C  C     +LC+ + F           SR                 
Sbjct: 79  DAVACVPLLPCFTCPECLRGFYSLCAKYDFI---------GSR-------------RDGG 116

Query: 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
            +EY V+   ++  +   +P      +   ++ G+ A       E G  V+I G G+IGL
Sbjct: 117 NAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCE-GKNVIIIGAGTIGL 174

Query: 216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVL 265
              + A   GA  +  +D+ SEK  + K  G  +  NS+      +  VL
Sbjct: 175 LAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVL 224

Length = 347

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 81.2 bits (201), Expect = 9e-18
 Identities = 57/242 (23%), Positives = 82/242 (33%), Gaps = 51/242 (21%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRIL 74
           +A +    G P  L + EV    P   EV VR+    +   DV   +    P    P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G EA GVV +VG  V G   GD V                                    
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGG------------------------------- 90

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                                ++EY V+    +V +   +    A  L     T   A +
Sbjct: 91  ---------------VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 195 RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
             A ++ G TV++ G  G +G A  + A+  GAT +  V   SEK E+ K  G    +N 
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-SEKLELLKELGADHVINY 194

Query: 254 KN 255
           + 
Sbjct: 195 RE 196

Length = 326

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 70/229 (30%), Positives = 96/229 (41%), Gaps = 32/229 (13%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MK--DFPAVFPRILGHEAIGVVESV 85
           L I    + P   H+VRVR+    +C SDV + K M+  DF    P ++GHE  G++E V
Sbjct: 29  LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEV 88

Query: 86  GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
           G  V  +V GD V       C  C  C+  + NLC    F  +P                
Sbjct: 89  GSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATP---------------- 132

Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVG 202
            +H      S +   V       K+   V      +   LS GV      A R AN+   
Sbjct: 133 PVH-----GSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVH-----ACRRANIGPE 182

Query: 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           + V++ G G IGL     AR  GA RI+ VDV  E+  + K+ G  E V
Sbjct: 183 TNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIV 231

Length = 364

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 79.2 bits (196), Expect = 4e-17
 Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 43/247 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A   T PG PL + E  V  P   EV +++    +CHSD    +       +PR+ GHE
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G +++VGE V     GD V +      C  C  CR                       
Sbjct: 62  VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACR----------------------- 98

Query: 137 SRFKDLRGETIH----HFVSVSS---FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
                 RG+ +H        V+    ++EY +     + ++   +    A  L C GV+T
Sbjct: 99  ------RGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTT 152

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
               A R +  + G  V + G+G +G LAV + A   G  R + +   S+K ++ ++ G 
Sbjct: 153 --FNALRNSGAKPGDLVAVQGIGGLGHLAV-QYAAKMG-FRTVAISRGSDKADLARKLGA 208

Query: 248 TEFVNSK 254
             ++++ 
Sbjct: 209 HHYIDTS 215

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 79.2 bits (196), Expect = 5e-17
 Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 24/204 (11%)

Query: 46  VRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD 105
           V++   ++C SD+  ++          +LGHE +G V  VG  V  +  GD V+  F   
Sbjct: 30  VKVTAAAICGSDLHIYRGHIPSTP-GFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIA 88

Query: 106 CTECVGCRSKKGNLCS---AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL 162
           C EC  CR  +   C+    F +  SP +   Q              +V V  F++ T  
Sbjct: 89  CGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQA------------EYVRV-PFADGT-- 133

Query: 163 DIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR 222
               ++K+   +    A LL   + TG   A + A V  G TV + G G +GL     A+
Sbjct: 134 ----LLKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCAVLSAQ 188

Query: 223 LCGATRIIGVDVISEKFEIGKRFG 246
           + GA R+  VD + E+ E     G
Sbjct: 189 VLGAARVFAVDPVPERLERAAALG 212

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 79.5 bits (196), Expect = 7e-17
 Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 36/254 (14%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KD----FPAV--FPRILGHEAIGV 81
           L +++V V      E+ +R+    +C SD+  ++  KD    +P +  FP ++GHE  GV
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGV 98

Query: 82  VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD 141
           VE  G+NV    +GD V    +  C  C  CRS   N C                   K+
Sbjct: 99  VEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHC----------------KNLKE 142

Query: 142 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV---PPNRACLLSCGVS-TGV---GAAW 194
           L       F +  +F+EY  ++  +  +++        ++A      V  T V   G   
Sbjct: 143 L------GFSADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFI 196

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
           R      G+ VV++G G IGLA    A+  GA+++I  ++  E+  + K  G     N  
Sbjct: 197 RGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPT 256

Query: 255 NCGDKSVSQVLLSI 268
              D    + ++ +
Sbjct: 257 KMRDCLSGEKVMEV 270

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 22/245 (8%)

Query: 23  TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRILGHEAIG 80
           T PG+P+V   V +    + +V V++    +CH+D++++ M         P  LGHE  G
Sbjct: 5   TEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYM-GVRTNHALPLALGHEISG 63

Query: 81  VVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK 140
            V   G      +   V++P  +  C EC  C++ +G +C            R Q     
Sbjct: 64  RVIQAGAGAASWIGKAVIVPAVIP-CGECELCKTGRGTIC------------RAQKMPGN 110

Query: 141 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE 200
           D++G    H V  +      V+D A +      +P     +++  V+T   AA + A ++
Sbjct: 111 DMQGGFASHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPYQAAVQ-AGLK 165

Query: 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS 260
            G  V++ G G +G  + + A+  GA  ++ +D+  EK E+ K FG    +N K+   + 
Sbjct: 166 KGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKDKSARE 224

Query: 261 VSQVL 265
           V +++
Sbjct: 225 VKKLI 229

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 76.3 bits (188), Expect = 5e-16
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 29/228 (12%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88
           L I+E  +  P + EVRV++    +C SD   ++  +  A +PR++GHE  GV+++VGE 
Sbjct: 12  LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 71

Query: 89  VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
           VD    G+ V    +  C  C  C   K N+C++    +   + RD              
Sbjct: 72  VDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSL---VVLGVHRD-------------- 114

Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV--GSTVV 206
                  FSEY V+   +  ++   +    A +    V     AA  T           +
Sbjct: 115 -----GGFSEYAVVPAKNAHRIPDAIADQYAVM----VEPFTIAANVTGRTGPTEQDVAL 165

Query: 207 IFGLGSIGLAVAEG-ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           I+G G +GL + +    +     +I  D I E+  + K  G    +N+
Sbjct: 166 IYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINN 213

Length = 339

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 29/244 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+        V+ E  + P    E  V++    +CH+D+      DF     RILGHE
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHV-ANGDFGDKTGRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            IG+V+ VG  V  +  GD V I  F   C  C  C + +  LC                
Sbjct: 61  GIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWR 195
            R     G T+         +E  ++   + VKV   + P +A  ++C GV+T    A +
Sbjct: 105 -RSVKNAGYTVD-----GGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTT--YKAIK 156

Query: 196 TANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            + ++ G  + I+G G +G LA+     +  A ++I VD+  +K  + K  G    +NSK
Sbjct: 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSK 215

Query: 255 NCGD 258
              D
Sbjct: 216 RVED 219

Length = 338

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 39/251 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV-------TFWKMKDFPAVF 70
           RA +   P +   ++EV V  P   E+ V++    +C  D+       +FW  ++ P   
Sbjct: 2   RAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 71  --PRILGHEAIGVVESVGENVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             P I GHE +G V  +GE  +  GV  GD VI   +  C  C  C   +  +C      
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQK---- 116

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LS 183
                         DL G   +    ++ +  +    I H  KV   +PP  A L   L+
Sbjct: 117 -------------HDLYGFQNNVNGGMAEYMRFPKEAIVH--KVPDDIPPEDAILIEPLA 161

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
           C +     A  R AN++    VV+ G G +GL +   ARL    ++I +D+  E+  + +
Sbjct: 162 CALH----AVDR-ANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR 216

Query: 244 RFGVTEFVNSK 254
           +FG    +N  
Sbjct: 217 KFGADVVLNPP 227

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 47/247 (19%), Positives = 77/247 (31%), Gaps = 62/247 (25%)

Query: 18  RAAIATAPGEPLVIDEV-IVDP-PNSHEVRVRIICTSLCHSDVTF---WKMKDFPAVFPR 72
           +A      G P V++   +  P P   EV V++    +   D+          FP   P 
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I GH+  GVV +VG  V G   GD V                                  
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVF----------------------GMTP------- 92

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                            F    +++EY V+    +      +    A      +      
Sbjct: 93  -----------------FTRGGAYAEYVVVPADELALKPANLSFEEA----AALPLAGLT 131

Query: 193 AWRT----ANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           AW+       ++ G TV+I G  G +G    + A+  GA R+I     +   +  +  G 
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIAT-ASAANADFLRSLGA 189

Query: 248 TEFVNSK 254
            E ++  
Sbjct: 190 DEVIDYT 196

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 67.0 bits (164), Expect = 8e-13
 Identities = 70/249 (28%), Positives = 106/249 (42%), Gaps = 39/249 (15%)

Query: 18  RAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSD---VTFWKMKDFPAVFPRI 73
           +A +    G E L +++V    P   EV +R+    +   D   +   K+K      P I
Sbjct: 2   KALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVK----PMPHI 57

Query: 74  LGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            G E  GVVE VG++V GV +GD VV+ + + D T C  C S    LC            
Sbjct: 58  PGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGT-CDMCLSGNEMLC------------ 104

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                     R   I   VS   ++EY V+   ++ K+  ++    A  L     T   A
Sbjct: 105 ----------RNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHA 154

Query: 193 AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
             +TA +  G TVV+FG  G+ G+   + A++ GA  I     +S K +  K FG  E V
Sbjct: 155 L-KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI----AVSRK-DWLKEFGADEVV 208

Query: 252 NSKNCGDKS 260
           +     +K 
Sbjct: 209 DYDEVEEKV 217

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           +E  V+    +V +   +PP RA L +   +T +      A   +G  V + GLG +GL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
            A+ A+  GA  ++GVD  + + E+ +  G  + V +
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAA 149

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 75/268 (27%), Positives = 105/268 (39%), Gaps = 63/268 (23%)

Query: 20  AIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDV--------TFWKMKDFPAVF 70
           AIA  PG+P V    I +P P   EV VR +   +C +D         T    +DF    
Sbjct: 3   AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDF---- 58

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
             +LGHEA+GVVE VG+   G+  GD+V+P       +C+ CR  + + C          
Sbjct: 59  -LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCE--------- 107

Query: 131 MPRDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                T  + + RG   +H F       EY V D  ++VKV P++  +   L   LS   
Sbjct: 108 -----TGEYTE-RGIKGLHGF-----MREYFVDDPEYLVKVPPSL-ADVGVLLEPLSV-- 153

Query: 187 STGVGAAWRTANVEVGS--------TVVIFGLGSIGL-----AVAEGARLCGATRIIGVD 233
              V  A   A   V            ++ G G IGL         G  +    R    D
Sbjct: 154 ---VEKAIEQA-EAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR---RD 206

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSV 261
               K +I +  G T +VNS       V
Sbjct: 207 PPDPKADIVEELGAT-YVNSSKTPVAEV 233

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 64.1 bits (157), Expect = 7e-12
 Identities = 58/260 (22%), Positives = 89/260 (34%), Gaps = 66/260 (25%)

Query: 18  RAAIATAP-GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRIL 74
           +AA+ T P G  LV+ +V V  P   EV V++   +L   D   WK +D+  +  +P IL
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVD---WKHQDYGFIPSYPAIL 58

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  G V  VG  V     GD V                + G                 
Sbjct: 59  GCDFAGTVVEVGSGVTRFKVGDRV----AGFVHGGNPNDPRNG----------------- 97

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST------ 188
                               +F EY V D     K+   +    A  L  G+ T      
Sbjct: 98  --------------------AFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALF 137

Query: 189 ---GVGAAWRTAN-VEVGSTVVIFGLGS--IGLAVAEGARLCGATRIIGVDVISEK-FEI 241
              G+       +    G  V+I+G GS  +G    + A+L G  ++I     S K F++
Sbjct: 138 QKLGLPLPPPKPSPASKGKPVLIWG-GSSSVGTLAIQLAKLAGY-KVIT--TASPKNFDL 193

Query: 242 GKRFGVTEFV--NSKNCGDK 259
            K  G       +  +  + 
Sbjct: 194 VKSLGADAVFDYHDPDVVED 213

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           +A +   PG   V D   V  P   +  +  VRI  T++C SD+  ++     A    +L
Sbjct: 2   KAVVYGGPGNVAVED---VPDPKIEHPTDAIVRITTTAICGSDLHMYR-GRTGAEPGLVL 57

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCS 121
           GHEA+G VE VG  V+ +  GD VV+P F   C  C  C+     +C 
Sbjct: 58  GHEAMGEVEEVGSAVESLKVGDRVVVP-FNVACGRCRNCKRGLTGVCL 104

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 68/248 (27%), Positives = 102/248 (41%), Gaps = 40/248 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDP--------PNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           R  +   PG+  V D  I  P           H V ++++ T++C SD    + +   A 
Sbjct: 4   RGVVYLGPGKVEVQD--IDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRT-TAP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
              +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C      ++P
Sbjct: 61  TGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVC----LNVNP 116

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNR--------- 178
                    + D+ G        V   SEY ++  A  +++K      P+R         
Sbjct: 117 ARAGAAYG-YVDMGG-------WVGGQSEYVMVPYADFNLLKF-----PDRDQALEKIRD 163

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
             +LS    TG   A  TA V  GSTV I G G +GLA A  A+L GA  +I  D+   +
Sbjct: 164 LTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPAR 222

Query: 239 FEIGKRFG 246
               + FG
Sbjct: 223 LAQARSFG 230

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 59.4 bits (145), Expect = 3e-10
 Identities = 55/243 (22%), Positives = 88/243 (36%), Gaps = 60/243 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
           +A +    G P  LV++EV  +P    EVR+R+    +   D+      +++K  P + P
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVK--PPL-P 58

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            + G E  GVVE+VGE V G                                        
Sbjct: 59  FVPGSEVAGVVEAVGEGVTGFKV------------------------------------- 81

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                       G+ +        F+E  V+  A V  +   +    A  L     T   
Sbjct: 82  ------------GDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYH 129

Query: 192 AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           A  R A ++ G TV++ G  G +GLA  + A+  GA R+I      EK  + +  G    
Sbjct: 130 ALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHV 188

Query: 251 VNS 253
           ++ 
Sbjct: 189 IDY 191

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 60/250 (24%), Positives = 90/250 (36%), Gaps = 52/250 (20%)

Query: 18  RAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD----FPAVFP 71
           +A   +  G  + L + E  V  P   EV VR+   SL + D+    + +     P   P
Sbjct: 2   KAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLL---ILNGRYPPPVKDP 58

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            I   +  G V +VGE V     GD V+P F  +                        W+
Sbjct: 59  LIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPN------------------------WL 94

Query: 132 --PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             P         L G  I         +EY VL    +V+    +    A  L C G++ 
Sbjct: 95  DGPPTAEDEASALGG-PIDGV-----LAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLT- 147

Query: 189 GVGAAWR----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
               AW        ++ G TV++ G G + L   + A+  GA R+I      EK E  K 
Sbjct: 148 ----AWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKA 202

Query: 245 FGVTEFVNSK 254
            G    +N +
Sbjct: 203 LGADHVINYR 212

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 59/247 (23%), Positives = 83/247 (33%), Gaps = 74/247 (29%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           +A +  + G P    + EV    P   +V VR+  + +   D    +         P IL
Sbjct: 2   KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVVE+VGE V     GD V            GC                      
Sbjct: 62  GCDVAGVVEAVGEGVTRFRVGDEVY-----------GC---------------------- 88

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLD---IAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                  L+G          S +EY V+D   +A         P N +   +  +     
Sbjct: 89  -AGGLGGLQG----------SLAEYAVVDARLLAL-------KPANLSMREAAALPLVGI 130

Query: 192 AAW----RTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEI 241
            AW      A V+ G TV+I     G+G +   LA A GAR+  AT        SEK   
Sbjct: 131 TAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVY-AT------ASSEKAAF 183

Query: 242 GKRFGVT 248
            +  G  
Sbjct: 184 ARSLGAD 190

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 24/219 (10%)

Query: 40  NSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96
           N++   V+I    +C SD+ ++   K+ +F    P +LGHE IG +     +  G+ EG 
Sbjct: 26  NNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQ 83

Query: 97  VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF 156
            V  +    C  C  C S   N C+   F  S          F  + G           F
Sbjct: 84  TVAINPSKPCGHCKYCLSHNENQCTTMRFFGS-------AMYFPHVDG----------GF 126

Query: 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           + Y V+D A  +              +  ++  + AA +  ++  G  V + G+G IG  
Sbjct: 127 TRYKVVDTAQCIPYPEKADEKVMA-FAEPLAVAIHAAHQAGDL-QGKRVFVSGVGPIGCL 184

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           +    +  GA  I+  DV      + +  G  + VN +N
Sbjct: 185 IVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN 223

Length = 343

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 43/190 (22%), Positives = 65/190 (34%), Gaps = 23/190 (12%)

Query: 73  ILGHEAIGVVESVGENVDGVVE------GDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
           +LGHE +G V ++        +      G  V+      C  C  CR      C      
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCD----- 55

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCG 185
                     S  K         +     ++E+  L     +V V   +P   A    C 
Sbjct: 56  ----------SLRKYGHEALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            +T V AA   A    G  V++ G G +GL  A  A   GA R++  D   ++ E+   F
Sbjct: 106 TAT-VMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164

Query: 246 GVTEFVNSKN 255
           G T     + 
Sbjct: 165 GATALAEPEV 174

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 57/217 (26%), Positives = 81/217 (37%), Gaps = 50/217 (23%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRI 73
           RA      G P  L I+E+ V  P + EV +R+    L  +D   ++   +  P   P  
Sbjct: 2   RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADA-MFRRGAYIEPPPLPAR 60

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LG+EA GVVE+VG  V G   GD V                            + P    
Sbjct: 61  LGYEAAGVVEAVGAGVTGFAVGDRVS---------------------------VIPAADL 93

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
            Q                   +++EY ++  A VVK+   +    A  L     T  GA 
Sbjct: 94  GQ-----------------YGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGAL 136

Query: 194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 229
              A +  G +V+I     S+GLA  + A   GAT I
Sbjct: 137 VELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVI 173

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 51/222 (22%), Positives = 74/222 (33%), Gaps = 69/222 (31%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVF 70
           R  + T  G P  L + E  +  P + EV V++  + +  +DV      +      P   
Sbjct: 2   REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFT- 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P   G++ +G V+++G  V G   GD V                                
Sbjct: 61  P---GYDLVGRVDALGSGVTGFEVGDRVAA------------------------------ 87

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
                                 V   +EY  LD  ++V V   V    A    C V   V
Sbjct: 88  -------------------LTRVGGNAEYINLDAKYLVPVPEGVDAAEA---VCLVLNYV 125

Query: 191 GAAW----RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGAT 227
             A+    R A V  G  V+I G  G +G A+ E A L GA 
Sbjct: 126 -TAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE 166

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 59/253 (23%), Positives = 89/253 (35%), Gaps = 78/253 (30%)

Query: 18  RAAIATAPGEPLVI--DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +A      G P V+  ++V V  P   EV VR     +   D  F +   +P   P +LG
Sbjct: 1   KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYF-RSGLYPLPLPFVLG 59

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            E  GVVE+VG  V G   GD V                       A P           
Sbjct: 60  VEGAGVVEAVGPGVTGFKVGDRV---------------------AYAGPP---------- 88

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW- 194
                              +++EY V+  + +VK    +P         G+S    AA  
Sbjct: 89  ------------------GAYAEYRVVPASRLVK----LPD--------GISDETAAALL 118

Query: 195 -----------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
                       T  V+ G TV++    G +GL + + A+  GA  +IG     EK E+ 
Sbjct: 119 LQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELA 177

Query: 243 KRFGVTEFVNSKN 255
           +  G    +N ++
Sbjct: 178 RAAGADHVINYRD 190

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 53/249 (21%), Positives = 86/249 (34%), Gaps = 54/249 (21%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWK----MKDFPAVFPR 72
           RAA+      PLV+ + + DP P   +V V+++   +C SD+        M D       
Sbjct: 2   RAAVFR--DGPLVVRD-VPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSL 58

Query: 73  -------ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125
                  +LGHE  G V   G   +                      + K G   ++ P 
Sbjct: 59  MDLGADIVLGHEFCGEVVDYGPGTER---------------------KLKVGTRVTSLPL 97

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---L 182
            +             +  G           ++EY +L  A +++V   +    A L   L
Sbjct: 98  LLCGQGASCGIGLSPEAPG----------GYAEYMLLSEALLLRVPDGLSMEDAALTEPL 147

Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
           + G+      A R A +  G   ++ G G IGLAV    +  G   I+  D   E+  + 
Sbjct: 148 AVGLH-----AVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALA 202

Query: 243 KRFGVTEFV 251
              G    V
Sbjct: 203 LAMGADIVV 211

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 55/245 (22%), Positives = 89/245 (36%), Gaps = 57/245 (23%)

Query: 17  CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV---FP 71
            +A +   PG    L ++E+ +  P + EV V++    L   D   WK+  +      +P
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVD---WKVIAWGPPAWSYP 57

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            + G +  GVV +VG  V G   GD V  H                              
Sbjct: 58  HVPGVDGAGVVVAVGAKVTGWKVGDRVAYH------------------------------ 87

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                S  +              SF+EYTV+D   V+ +  ++    A  L C   T   
Sbjct: 88  ----ASLARG------------GSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQ 131

Query: 192 AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           A ++   +E G T++I G  G +G    + A+  G  R+I        FE  K  G    
Sbjct: 132 ALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHV 189

Query: 251 VNSKN 255
           ++  +
Sbjct: 190 IDYND 194

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
                A V+ G TV +FG G +GL  A  A L GA+R+  VD + E+ ++ +  G  
Sbjct: 167 HGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI 223

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 52/242 (21%), Positives = 84/242 (34%), Gaps = 59/242 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +A +   PG P  L + E+ +  P    V +R+    L  S++   +       FPR+LG
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            EA+G VE           G  V               +  G +   F            
Sbjct: 62  IEAVGEVEEAPGG--TFTPGQRVA--------------TAMGGMGRTFD----------- 94

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                              S++EYT++    V  +D  +       L     T  G+ +R
Sbjct: 95  ------------------GSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136

Query: 196 TANVEVGSTVVI------FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +  ++ G T++I       GL ++ LA A GA +   TR        E+  + K  G  E
Sbjct: 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR------SPERAALLKELGADE 190

Query: 250 FV 251
            V
Sbjct: 191 VV 192

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 213 IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
           +GLA  + A+  GA R+I VD   EK E+ K  G    +N ++ 
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDE 45

Length = 131

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 18 RAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFP 71
          RAA+ T  G+P   L I EV    P + EV VR   + + + D+  W ++    +    P
Sbjct: 2  RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDL--WTIRGTYGYKPELP 59

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
           I G EA+GVV++VGE V G+  G  V
Sbjct: 60 AIGGSEAVGVVDAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 51/248 (20%), Positives = 78/248 (31%), Gaps = 66/248 (26%)

Query: 20  AIATAPGEPLVIDEVIVD----PPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV---FPR 72
            + T  G P V+  + V+     P   EV V++   S+   D    +      +   FP 
Sbjct: 1   VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I G +  G V +VG  V     GD V            G    KG               
Sbjct: 61  IPGMDFAGEVVAVGSGVTRFKVGDEVF-----------GRLPPKG--------------- 94

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                      G          + +EY V   + + K    V    A  L     T + A
Sbjct: 95  ----------GG----------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQA 134

Query: 193 AWRTANVEVGSTVVIFG----LGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                 V+ G  V+I G    +G+    +A A GA       + GV   +   E+ +  G
Sbjct: 135 LRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA------HVTGVC-STRNAELVRSLG 187

Query: 247 VTEFVNSK 254
             E ++  
Sbjct: 188 ADEVIDYT 195

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 17  CRAAIATAPGEPL----VIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFP 67
            +A + T  GEP     +    I  P   +EV V+++   +  +D+      +       
Sbjct: 1   AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
              P + G+E +G V  VG  V  +  GD VIP 
Sbjct: 61  PEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPL 94

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 23/215 (10%)

Query: 42  HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IP 100
           ++V V+I+   +CHSD+   K     + +P I GHE +G+   VG+NV    EGD V + 
Sbjct: 32  NDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVG 91

Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD-LRGETIHHFVSVSSFSEY 159
             +  C  C  C     N C    F  +        SR  D  R +          +S+ 
Sbjct: 92  VIIGSCQSCESCNQDLENYCPKVVFTYN--------SRSSDGTRNQ--------GGYSDV 135

Query: 160 TVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAV 217
            V+D   V+ +   +P +  A LL  G++      +     E G  + + GLG +G +AV
Sbjct: 136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 195

Query: 218 AEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFV 251
             G       R+  +   SEK  E   R G   F+
Sbjct: 196 KIGKAF--GLRVTVISRSSEKEREAIDRLGADSFL 228

Length = 375

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 20  AIATAPGEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRI 73
            + T  GEP    L +  + + PP   EV VR++   +  SD+          P   P +
Sbjct: 1   VVYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPP-LPAV 59

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIP 100
            G+E +GVV  VG  V G++ G  V+P
Sbjct: 60  PGNEGVGVVVEVGSGVSGLLVGQRVLP 86

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 57/240 (23%), Positives = 88/240 (36%), Gaps = 49/240 (20%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWK--MKDFPAVFPRIL 74
           +A +     +  V D  +  P P   E  VR++   +C++D+  +K         FP + 
Sbjct: 2   KALVLDGGLDLRVED--LPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVP 54

Query: 75  GHEAIGVVESVGEN--VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE +G+VE   E   V   V G++ I      C  C  CR      C           P
Sbjct: 55  GHEFVGIVEEGPEAELVGKRVVGEINIA-----CGRCEYCRRGLYTHC-----------P 98

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST---- 188
                   D  G          +F+EY  L + ++  V   VP  +A      V      
Sbjct: 99  NRTVLGIVDRDG----------AFAEYLTLPLENLHVVPDLVPDEQA------VFAEPLA 142

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
                     +  G  V + G G +GL +A+   L G   ++ V   SEK  + +R GV 
Sbjct: 143 AALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVE 201

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 28/174 (16%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPH 101
           +V +++I   +CH+D+   K     + +P + GHE +G V  VG +V     GD+V +  
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            +  C EC  C+S     C+    +I  W   D  +  K  +G           F+   V
Sbjct: 96  IVGCCGECSPCKSDLEQYCNK---RI--WSYNDVYTDGKPTQG----------GFASAMV 140

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
           +D   VVK+   + P +A  L C            A V V S +  FGL   GL
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLC------------AGVTVYSPLSHFGLKQSGL 182

Length = 357

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 18/215 (8%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPH 101
           +V V+I+   +CHSD+   K +     +P + GHE +G+V  +G+NV    EGD V +  
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            +  C  C  C     N C    F  +  +  D T  +                +S+  V
Sbjct: 99  IVGSCKSCESCDQDLENYCPKMIFTYNS-IGHDGTKNY--------------GGYSDMIV 143

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEG 220
           +D   V++    +P +    L C   T           E G  + + GLG +G +AV  G
Sbjct: 144 VDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIG 203

Query: 221 ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
                   +I      E   I  R G   F+ S +
Sbjct: 204 KAFGLKVTVISSSSNKEDEAI-NRLGADSFLVSTD 237

Length = 360

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 56/245 (22%), Positives = 90/245 (36%), Gaps = 61/245 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           RA      G P  L + ++ V  P   EV VR+  + +   D                + 
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVP 61

Query: 76  H-EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             +  GVVE+VGE VDG+  GD V   +L +    +G   ++G                 
Sbjct: 62  GSDGAGVVEAVGEGVDGLKVGDRV---WLTN----LGWGRRQG----------------- 97

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA-- 192
                               + +EY V+    +V +   V          G + G+ A  
Sbjct: 98  --------------------TAAEYVVVPADQLVPLPDGVSF------EQGAALGIPALT 131

Query: 193 AWRT----ANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           A+R     A  + G TV++ G  G++G A  + AR  GA R+I     +E  E+ ++ G 
Sbjct: 132 AYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGA 190

Query: 248 TEFVN 252
               N
Sbjct: 191 DAVFN 195

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 32/170 (18%)

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
                    FPRI G + +G V +VGE VD    G+ V+                     
Sbjct: 68  AGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVL--------------------- 106

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
                 + P +         D+    I        F+EYTV+   +   V+  +      
Sbjct: 107 ------VDPSIRDPPEDDPADID--YIGSERD-GGFAEYTVVPAENAYPVNSPLSDVELA 157

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 229
              C  ST      R A V  G TV++ G  G +G A+ + A+  GA  I
Sbjct: 158 TFPCSYSTAENMLER-AGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI 206

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 18 RAAIATAPGEPLVIDEVIVDP-----PNSHEVRVRIICTSLCHSDVTFWKMK---DFPAV 69
          +A +    G+PL + E+ +       P   EV +++    +  SD+ F  +K        
Sbjct: 2  KALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGF--LKGQYGSTKA 59

Query: 70 FPRILGHEAIGVVESVGENVDG 91
           P   G E  G V + G     
Sbjct: 60 LPVPPGFEGSGTVVAAGGGPLA 81

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 38 PPNSHEVRVRIICTSLCHSDVTFWKM-KDFPAVF------PRILGHEAIGVVESVGENVD 90
               E+ VR+I  SLC S         D   V       P ILGHE  G +  VG+   
Sbjct: 23 EIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQ 82

Query: 91 G 91
          G
Sbjct: 83 G 83

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           G TV+I GLG IG  +A  A+  G  R+IGV
Sbjct: 134 GKTVLIVGLGDIGREIARRAKAFGM-RVIGV 163

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 28  PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL-GHEAIGVVESVG 86
           PL   E  V  P   E+ VR+    +C +D+   +  D P   PR+  GHE +G V   G
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSE-GDLPVHRPRVTPGHEVVGEVAGRG 72

Query: 87  ENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSA 122
            +  G   GD V I      C  C  CR    NLC A
Sbjct: 73  ADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPA 109

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR--- 72
          RA      G    L I E     P  ++V +++    +  +D    + K  P   P    
Sbjct: 3  RAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP---PPGSS 59

Query: 73 -ILGHEAIGVVESVGENVDGVVEGDVVI 99
           ILG E  G VE VG +V    EGD V+
Sbjct: 60 EILGLEVAGYVEDVGSDVKRFKEGDRVM 87

Length = 334

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 39.3 bits (93), Expect = 0.001
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 18 RAAIATAPGEP--LVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRI 73
          +A +   PG P  L + EV   P P   EV +R+    +  +D+   +     P     I
Sbjct: 2  KAIVIKEPGGPEVLELGEV-PKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDI 60

Query: 74 LGHEAIGVVESVGENVDGVVEGDVV 98
          LG E  GVV +VG  V G   GD V
Sbjct: 61 LGLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 31 IDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89
          ID  +  P P   ++ VR+   S+   D             P+ILG +A GVVE+VG  V
Sbjct: 19 IDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEV 78

Query: 90 DGVVEGDVV 98
               GD V
Sbjct: 79 TLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 56/233 (24%), Positives = 79/233 (33%), Gaps = 58/233 (24%)

Query: 39  PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI-LGHEAIGVVESVGENVDGVVEGDV 97
           P   EV V+     +  SD+ F   +  P V P    G E +G V +VGE V     GD 
Sbjct: 28  PGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDA 87

Query: 98  VIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS 157
           V                                                    +S  +F+
Sbjct: 88  VA--------------------------------------------------TMSFGAFA 97

Query: 158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV-VIFGLGSIGLA 216
           EY V+   H V V P + P    LL  G++  + A      ++ G TV V    G  G  
Sbjct: 98  EYQVVPARHAVPV-PELKPEVLPLLVSGLTASI-ALEEVGEMKSGETVLVTAAAGGTGQF 155

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIY 269
             + A+L G   +IG     EK E  K  G    +N K    + + +VL   Y
Sbjct: 156 AVQLAKLAGCH-VIGTCSSDEKAEFLKSLGCDRPINYKT---EDLGEVLKKEY 204

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.98
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.98
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.98
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.98
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.97
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.97
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.97
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.97
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.97
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.97
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.97
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.97
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.97
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.97
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.97
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.96
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.96
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.96
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.96
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.96
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.96
PTZ00354	334	alcohol dehydrogenase; Provisional	99.96
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.96
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.96
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.96
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.96
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.95
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.95
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.95
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.95
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.95
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.95
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.95
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.95
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.95
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.94
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.94
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.94
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.94
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.93
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.93
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.93
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.92
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.92
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.92
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.91
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.89
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.89
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.77
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.76
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.65
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	98.79
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.19
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.51
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.51
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.27
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.05
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.92
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.82
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.69
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.69
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.59
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.47
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.44
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.43
PRK08017	256	oxidoreductase; Provisional	96.34
PRK05993	277	short chain dehydrogenase; Provisional	96.22
PLN02494	477	adenosylhomocysteinase	96.13
PRK08324	681	short chain dehydrogenase; Validated	95.99
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	95.96
PRK08177	225	short chain dehydrogenase; Provisional	95.85
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	95.84
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.65
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.59
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.58
PRK06139	330	short chain dehydrogenase; Provisional	95.56
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.52
PRK05693	274	short chain dehydrogenase; Provisional	95.49
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.37
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.25
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.21
PRK06182	273	short chain dehydrogenase; Validated	95.18
PRK06949	258	short chain dehydrogenase; Provisional	95.16
PRK06057	255	short chain dehydrogenase; Provisional	95.15
PRK04148	134	hypothetical protein; Provisional	95.15
PRK06101	240	short chain dehydrogenase; Provisional	95.09
PRK07825	273	short chain dehydrogenase; Provisional	95.04
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.01
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.95
PRK07060	245	short chain dehydrogenase; Provisional	94.9
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	94.88
PRK12829	264	short chain dehydrogenase; Provisional	94.87
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.86
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	94.8
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.79
PRK06196	315	oxidoreductase; Provisional	94.78
PRK08339	263	short chain dehydrogenase; Provisional	94.7
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.7
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.67
PRK06500	249	short chain dehydrogenase; Provisional	94.62
PRK07904	253	short chain dehydrogenase; Provisional	94.61
PRK06198	260	short chain dehydrogenase; Provisional	94.6
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.56
PRK05867	253	short chain dehydrogenase; Provisional	94.5
PRK07831	262	short chain dehydrogenase; Provisional	94.5
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.45
PRK08265	261	short chain dehydrogenase; Provisional	94.45
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	94.39
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	94.34
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.17
PRK07677	252	short chain dehydrogenase; Provisional	94.12
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	94.1
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.06
PRK05866	293	short chain dehydrogenase; Provisional	94.06
PRK06953	222	short chain dehydrogenase; Provisional	94.03
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	94.03
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.0
PRK09291	257	short chain dehydrogenase; Provisional	93.99
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.94
PRK07814	263	short chain dehydrogenase; Provisional	93.91
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.88
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.87
PRK07576	264	short chain dehydrogenase; Provisional	93.84
PRK06841	255	short chain dehydrogenase; Provisional	93.84
PRK07109	334	short chain dehydrogenase; Provisional	93.84
PRK06180	277	short chain dehydrogenase; Provisional	93.83
PRK06125	259	short chain dehydrogenase; Provisional	93.82
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	93.82
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	93.82
PRK05872	296	short chain dehydrogenase; Provisional	93.77
PRK08267	260	short chain dehydrogenase; Provisional	93.77
PRK07326	237	short chain dehydrogenase; Provisional	93.74
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	93.73
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.72
PRK08264	238	short chain dehydrogenase; Validated	93.65
PRK09072	263	short chain dehydrogenase; Provisional	93.64
PRK12939	250	short chain dehydrogenase; Provisional	93.62
PRK06484	520	short chain dehydrogenase; Validated	93.61
PRK05875	276	short chain dehydrogenase; Provisional	93.59
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	93.58
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.55
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.54
PRK12742	237	oxidoreductase; Provisional	93.52
PRK13940	414	glutamyl-tRNA reductase; Provisional	93.51
PRK05717	255	oxidoreductase; Validated	93.42
PRK06484	520	short chain dehydrogenase; Validated	93.4
PRK05876	275	short chain dehydrogenase; Provisional	93.39
PRK07478	254	short chain dehydrogenase; Provisional	93.37
PRK07454	241	short chain dehydrogenase; Provisional	93.32
PRK07062	265	short chain dehydrogenase; Provisional	93.32
PLN03209	576	translocon at the inner envelope of chloroplast su	93.31
PRK06914	280	short chain dehydrogenase; Provisional	93.25
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	93.23
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.2
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.17
PRK12828	239	short chain dehydrogenase; Provisional	93.15
PRK07067	257	sorbitol dehydrogenase; Provisional	93.14
PRK08862	227	short chain dehydrogenase; Provisional	93.14
PRK07024	257	short chain dehydrogenase; Provisional	93.14
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.14
PRK08703	239	short chain dehydrogenase; Provisional	93.13
PRK07890	258	short chain dehydrogenase; Provisional	93.12
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	93.11
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.05
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.04
PRK07063	260	short chain dehydrogenase; Provisional	93.03
PLN02780	320	ketoreductase/ oxidoreductase	93.02
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.99
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.99
PRK07035	252	short chain dehydrogenase; Provisional	92.95
PRK05854	313	short chain dehydrogenase; Provisional	92.88
PRK06138	252	short chain dehydrogenase; Provisional	92.83
PRK08340	259	glucose-1-dehydrogenase; Provisional	92.8
PRK08628	258	short chain dehydrogenase; Provisional	92.77
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	92.68
PRK08277	278	D-mannonate oxidoreductase; Provisional	92.68
PRK06194	287	hypothetical protein; Provisional	92.67
PRK06172	253	short chain dehydrogenase; Provisional	92.66
PRK08589	272	short chain dehydrogenase; Validated	92.61
PRK08303	305	short chain dehydrogenase; Provisional	92.6
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	92.59
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	92.55
PRK09186	256	flagellin modification protein A; Provisional	92.55
PRK05884	223	short chain dehydrogenase; Provisional	92.54
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	92.52
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.51
PRK06483	236	dihydromonapterin reductase; Provisional	92.5
PRK08251	248	short chain dehydrogenase; Provisional	92.49
PRK06114	254	short chain dehydrogenase; Provisional	92.45
PRK06124	256	gluconate 5-dehydrogenase; Provisional	92.44
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	92.37
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	92.35
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.35
PRK08085	254	gluconate 5-dehydrogenase; Provisional	92.33
PRK12367	245	short chain dehydrogenase; Provisional	92.31
PRK09242	257	tropinone reductase; Provisional	92.3
PRK07453	322	protochlorophyllide oxidoreductase; Validated	92.29
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	92.18
PRK07774	250	short chain dehydrogenase; Provisional	92.17
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	92.16
PRK08643	256	acetoin reductase; Validated	92.13
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	92.11
PRK07806	248	short chain dehydrogenase; Provisional	92.06
PRK07791	286	short chain dehydrogenase; Provisional	92.03
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	91.98
PRK06197	306	short chain dehydrogenase; Provisional	91.98
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	91.95
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	91.9
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	91.89
PRK08226	263	short chain dehydrogenase; Provisional	91.85
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.84
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	91.84
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.83
PRK07074	257	short chain dehydrogenase; Provisional	91.81
PRK06720	169	hypothetical protein; Provisional	91.8
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	91.77
PRK07856	252	short chain dehydrogenase; Provisional	91.73
PRK10538	248	malonic semialdehyde reductase; Provisional	91.67
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	91.66
PRK07102	243	short chain dehydrogenase; Provisional	91.63
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.58
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	91.55
PRK06181	263	short chain dehydrogenase; Provisional	91.54
PRK08263	275	short chain dehydrogenase; Provisional	91.49
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.44
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.38
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	91.37
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.36
PRK06398	258	aldose dehydrogenase; Validated	91.3
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	91.29
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	91.28
PRK06482	276	short chain dehydrogenase; Provisional	91.27
PLN02253	280	xanthoxin dehydrogenase	91.18
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.14
PRK06940	275	short chain dehydrogenase; Provisional	91.14
PRK06128	300	oxidoreductase; Provisional	91.0
PRK07577	234	short chain dehydrogenase; Provisional	91.0
PLN00203	519	glutamyl-tRNA reductase	90.92
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.89
PRK00811	283	spermidine synthase; Provisional	90.75
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	90.72
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.71
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	90.7
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	90.67
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	90.65
PRK06179	270	short chain dehydrogenase; Provisional	90.63
PLN02366	308	spermidine synthase	90.62
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	90.61
PRK11761	296	cysM cysteine synthase B; Provisional	90.6
PRK12743	256	oxidoreductase; Provisional	90.56
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	90.53
KOG0725	270	consensus Reductases with broad range of substrate	90.53
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	90.52
PRK07832	272	short chain dehydrogenase; Provisional	90.48
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	90.4
PRK06701	290	short chain dehydrogenase; Provisional	90.35
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	90.25
PRK08219	227	short chain dehydrogenase; Provisional	90.23
COG4122	219	Predicted O-methyltransferase [General function pr	90.22
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.12
PRK10669	558	putative cation:proton antiport protein; Provision	90.11
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	90.08
PRK07097	265	gluconate 5-dehydrogenase; Provisional	90.07
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	90.02
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.01
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.97
PLN03013	429	cysteine synthase	89.93
PRK12937	245	short chain dehydrogenase; Provisional	89.91
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	89.89
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	89.86
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	89.77
KOG1252	362	consensus Cystathionine beta-synthase and related	89.73
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	89.67
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	89.63
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.6
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	89.57
PRK12938	246	acetyacetyl-CoA reductase; Provisional	89.57
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	89.48
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.4
CHL00194	317	ycf39 Ycf39; Provisional	89.32
COG0569	225	TrkA K+ transport systems, NAD-binding component [	89.24
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	89.22
KOG1208	314	consensus Dehydrogenases with different specificit	89.19
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	89.11
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.99
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	88.88
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.85
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	88.76
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	88.72
PRK07775	274	short chain dehydrogenase; Provisional	88.72
PRK06523	260	short chain dehydrogenase; Provisional	88.71
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.7
PLN02565	322	cysteine synthase	88.68
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.61
PRK12814	652	putative NADPH-dependent glutamate synthase small	88.59
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	88.57
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	88.45
PRK11823	446	DNA repair protein RadA; Provisional	88.4
PLN02823	336	spermine synthase	88.38
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	88.38
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	88.38
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	88.33
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.29
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	88.24
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	88.23
PRK08278	273	short chain dehydrogenase; Provisional	88.23
TIGR01136	299	cysKM cysteine synthases. This model discriminates	88.21
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	88.19
PRK13403	335	ketol-acid reductoisomerase; Provisional	88.13
PRK13984	604	putative oxidoreductase; Provisional	88.12
PRK14982	340	acyl-ACP reductase; Provisional	88.1
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.98
PRK03562	621	glutathione-regulated potassium-efflux system prot	87.94
PRK05855	582	short chain dehydrogenase; Validated	87.91
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	87.88
TIGR02415	254	23BDH acetoin reductases. One member of this famil	87.87
PRK07985	294	oxidoreductase; Provisional	87.87
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	87.86
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	87.86
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	87.86
PLN02896	353	cinnamyl-alcohol dehydrogenase	87.84
PLN02686	367	cinnamoyl-CoA reductase	87.83
PRK06141	314	ornithine cyclodeaminase; Validated	87.82
PRK09135	249	pteridine reductase; Provisional	87.81
PLN02583	297	cinnamoyl-CoA reductase	87.78
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.76
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	87.74
PRK07340	304	ornithine cyclodeaminase; Validated	87.7
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.67
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.66
PRK07417	279	arogenate dehydrogenase; Reviewed	87.64
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	87.61
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.57
PRK01581	374	speE spermidine synthase; Validated	87.54
PLN03139	386	formate dehydrogenase; Provisional	87.53
PRK05650	270	short chain dehydrogenase; Provisional	87.53
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	87.51
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	87.47
PRK06924	251	short chain dehydrogenase; Provisional	87.43
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	87.29
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	87.21
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	87.2
PRK05599	246	hypothetical protein; Provisional	87.13
PRK08618	325	ornithine cyclodeaminase; Validated	87.13
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	87.05
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	87.01
PRK07201	657	short chain dehydrogenase; Provisional	87.0
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	87.0
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	86.93
PRK12935	247	acetoacetyl-CoA reductase; Provisional	86.92
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.87
PRK07574	385	formate dehydrogenase; Provisional	86.83
PRK12746	254	short chain dehydrogenase; Provisional	86.83
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	86.76
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.71
COG0569	225	TrkA K+ transport systems, NAD-binding component [	86.64
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	86.63
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	86.62
PRK12747	252	short chain dehydrogenase; Provisional	86.61
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	86.6
TIGR00438	188	rrmJ cell division protein FtsJ.	86.58
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	86.57
PRK06849	389	hypothetical protein; Provisional	86.53
PLN02928	347	oxidoreductase family protein	86.48
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	86.45
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	86.37
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	86.36
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	86.18
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	86.15
PRK09496	453	trkA potassium transporter peripheral membrane com	86.11
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	86.11
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	86.1
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	86.05
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	86.02
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	86.02
PRK14967	223	putative methyltransferase; Provisional	85.99
PLN02778	298	3,5-epimerase/4-reductase	85.98
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	85.95
PRK06719	157	precorrin-2 dehydrogenase; Validated	85.85
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	85.76
PRK06753	373	hypothetical protein; Provisional	85.72
PRK08328	231	hypothetical protein; Provisional	85.68
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	85.67
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	85.67
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.56
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.56
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	85.56
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.52
PRK13243	333	glyoxylate reductase; Reviewed	85.5
PRK08163	396	salicylate hydroxylase; Provisional	85.45
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	85.43
PRK06847	375	hypothetical protein; Provisional	85.41
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	85.4
PRK06947	248	glucose-1-dehydrogenase; Provisional	85.39
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	85.38
PRK08936	261	glucose-1-dehydrogenase; Provisional	85.37
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	85.32
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	85.31
PRK09134	258	short chain dehydrogenase; Provisional	85.27
PLN02650	351	dihydroflavonol-4-reductase	85.25
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	85.24
PRK04457	262	spermidine synthase; Provisional	85.24
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	85.21
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	85.2
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	85.14
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	85.13
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	85.04
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	85.03
PRK09496	453	trkA potassium transporter peripheral membrane com	84.97
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.96
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	84.93
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	84.92
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	84.87
PRK07023	243	short chain dehydrogenase; Provisional	84.85
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	84.83
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	84.81
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	84.79
PRK08309	177	short chain dehydrogenase; Provisional	84.53
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	84.45
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	84.3
PLN00011	323	cysteine synthase	84.28
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	84.27
PRK07236	386	hypothetical protein; Provisional	84.26

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.7e-52  Score=374.67  Aligned_cols=228  Identities=32%  Similarity=0.483  Sum_probs=215.2

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |++|||+++.++++|++++|++.|+|+++||+|||+++|+|++|++.+.|.++...+|+++|||.+|+|+++|++|+.|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            46899999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCEEEe-cCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           94 EGDVVIP-HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        94 ~Gd~V~~-~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      +||||.+ +...+|++|.+|++|++++|++...   .|++.+|                   +|+||+++++.+++++|+
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP~  138 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIPE  138 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECCC
Confidence            9999988 8889999999999999999999775   6777777                   999999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      ++++++||.+.|++.|+|+++ +..++++|++|+|.|.|++|++++|+|+++|+ +|++++++++|+++++++|+++++|
T Consensus       139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~  216 (339)
T COG1064         139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVIN  216 (339)
T ss_pred             CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEE
Confidence            999999999999999999976 55899999999999999999999999999997 9999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHh
Q 023561          253 SKNCGDKSVSQVLLSI  268 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~  268 (280)
                      ..+   +++.+.+++.
T Consensus       217 ~~~---~~~~~~~~~~  229 (339)
T COG1064         217 SSD---SDALEAVKEI  229 (339)
T ss_pred             cCC---chhhHHhHhh
Confidence            766   6777777764

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1.4e-50  Score=356.50  Aligned_cols=258  Identities=44%  Similarity=0.722  Sum_probs=248.2

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      +++||+++.++++||+++|+.+++|+++|||||+.++|+|++|...++|..|.. +|.++|||++|+|+++|++|.++++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            468999999999999999999999999999999999999999999999999986 9999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|+..+..+|++|.+|.+|.+++|...+.++..|...+|+.++. .++++..|+.+.++|++|.+++..++++++++.
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCCC
Confidence            9999999999999999999999999999998888999999999998 899999999999999999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      +++.++++.|...|.+.++.+.+++++|++|.|+|.|++|++++|-|+..|+.+||++|.+++|++++++||+++++|+.
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~  238 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK  238 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCc-cHHHHHHHhcCCCceEEE
Q 023561          255 NCGDK-SVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       255 ~~~~~-~~~~~v~~~~~gg~~~v~  277 (280)
                      +   . +..+.+.++|++|.+.++
T Consensus       239 ~---~~~vv~~i~~~T~gG~d~~~  259 (366)
T COG1062         239 E---VDDVVEAIVELTDGGADYAF  259 (366)
T ss_pred             h---hhhHHHHHHHhcCCCCCEEE
Confidence            7   4 699999999998876654

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.7e-50  Score=349.74  Aligned_cols=265  Identities=52%  Similarity=0.876  Sum_probs=250.3

Q ss_pred             CCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      .++.++|||++..++++||.++|+.+++|+..||+||+.++++|++|...|+|..+...+|.++|||++|+|+.+|++|.
T Consensus         2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~   81 (375)
T KOG0022|consen    2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT   81 (375)
T ss_pred             CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence            45778999999999999999999999999999999999999999999999999988788999999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      ++++||+|+......|+.|++|+++..|+|.+.+.+.+.+. ..+|..||. .+|+.+.||.+..+|+||.+++...+.+
T Consensus        82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~k  160 (375)
T KOG0022|consen   82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAK  160 (375)
T ss_pred             ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeEe
Confidence            99999999999999999999999999999999988864444 459999999 8999999999999999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      |++..+++.++++.|.++|+|.|+++.+++++|+++.|+|.|++|+++++-+|+.|+.++|++|.+++|.+.++++|+++
T Consensus       161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe  240 (375)
T KOG0022|consen  161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE  240 (375)
T ss_pred             cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++|+.+ ..+...+.++|.|+||+|.-+
T Consensus       241 ~iNp~d-~~~~i~evi~EmTdgGvDysf  267 (375)
T KOG0022|consen  241 FINPKD-LKKPIQEVIIEMTDGGVDYSF  267 (375)
T ss_pred             ecChhh-ccccHHHHHHHHhcCCceEEE
Confidence            999985 234788999999999986544

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.7e-46  Score=327.37  Aligned_cols=247  Identities=28%  Similarity=0.417  Sum_probs=223.2

Q ss_pred             CCcceeeeeeecCCCC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           12 GKPIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      ..+.++++|.+..+++  ++++.+++.|+|+++||+||++++|||++|++.|.|.++...+|.++|||.+|+|+++|++|
T Consensus         5 ~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~V   84 (360)
T KOG0023|consen    5 SIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSNV   84 (360)
T ss_pred             cCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCCc
Confidence            3567899999998888  46679999999999999999999999999999999999988999999999999999999999


Q ss_pred             CCCCCCCEE-EecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEE
Q 023561           90 DGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (280)
Q Consensus        90 ~~~~~Gd~V-~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  168 (280)
                      +.|++||+| +-....+|.+|.+|.++++++|++...+ ..|...||              ..+.|+|++|+++++.+++
T Consensus        85 ~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~~DG--------------t~~~ggf~~~~~v~~~~a~  149 (360)
T KOG0023|consen   85 TGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVYHDG--------------TITQGGFQEYAVVDEVFAI  149 (360)
T ss_pred             ccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccccCC--------------CCccCccceeEEEeeeeEE
Confidence            999999999 6677789999999999999999985544 57888888              4445699999999999999


Q ss_pred             EcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHHHHcCC
Q 023561          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFGV  247 (280)
Q Consensus       169 ~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~-~~~~~~~~~Ga  247 (280)
                      +||++++.++||.+.|+..|+|.+| ...++.+|+++.|.|+|++|++++|+||+||. +|+++++++ +|.+.++.+||
T Consensus       150 kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LGA  227 (360)
T KOG0023|consen  150 KIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLGA  227 (360)
T ss_pred             ECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcCc
Confidence            9999999999999999999999965 66788899999999997799999999999999 899999887 67777778999


Q ss_pred             cEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          248 TEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       248 ~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +.+++..+  ++++.+.+++.++++++.+.
T Consensus       228 d~fv~~~~--d~d~~~~~~~~~dg~~~~v~  255 (360)
T KOG0023|consen  228 DVFVDSTE--DPDIMKAIMKTTDGGIDTVS  255 (360)
T ss_pred             ceeEEecC--CHHHHHHHHHhhcCcceeee
Confidence            99998773  48999999999999887665

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.3e-44  Score=316.27  Aligned_cols=233  Identities=28%  Similarity=0.445  Sum_probs=206.5

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCC-CCCeEEEEeeeeecChhhhhhhhcCCCC---CCCCcccccceeEEEEEeCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      .+|+|+++.++++ ++++++|.|++ .|+||+|++.++|||++|++.|......   .+.|+++|||.+|+|+++|+.|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            5689999999998 99999999998 8999999999999999999999876543   35799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      ++++||||++-|..+|+.|++|++|++|+||...+.  .-...+|                   ++++|++.++++++++
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~--atpp~~G-------------------~la~y~~~~~dfc~KL  140 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC--ATPPVDG-------------------TLAEYYVHPADFCYKL  140 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCccccc--cCCCcCC-------------------ceEEEEEechHheeeC
Confidence            999999999999999999999999999999998873  1223456                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      ||++|++++|++. +++++|+| .+++++++|.+|||+|+|++|+++...||++|+.+|++++..+.|+++++++|++.+
T Consensus       141 Pd~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~  218 (354)
T KOG0024|consen  141 PDNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVT  218 (354)
T ss_pred             CCCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEE
Confidence            9999999999988 89999995 688999999999999999999999999999999999999999999999999999988


Q ss_pred             EcCCCCC-CccHHHHHHHhcCC
Q 023561          251 VNSKNCG-DKSVSQVLLSIYDL  271 (280)
Q Consensus       251 i~~~~~~-~~~~~~~v~~~~~g  271 (280)
                      .+..... .+++.+.+....+.
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~g~  240 (354)
T KOG0024|consen  219 DPSSHKSSPQELAELVEKALGK  240 (354)
T ss_pred             eeccccccHHHHHHHHHhhccc
Confidence            7655411 13344444444443

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.4e-41  Score=314.14  Aligned_cols=259  Identities=46%  Similarity=0.735  Sum_probs=217.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++...+++++++++|.|+|.++||+|||.++|+|++|++.+.|..+...+|.++|||++|+|+++|++++.|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            78999988887899999999999999999999999999999999988765556799999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      ||++.+..+|++|.+|+.|..++|++.......|+..+|+.++.. .|....+..+.|+|+||+++|.++++++|+++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSK-DGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCcccccc-CCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            999988899999999999999999985432223443333222210 1111111222469999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~  256 (280)
                      ++++++.+++.|+|+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++|+.+ 
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-  239 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPND-  239 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccc-
Confidence            9999999999999998878889999999999999999999999999999977999999999999999999999998763 


Q ss_pred             CCccHHHHHHHhcCCCceEEE
Q 023561          257 GDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       257 ~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      .++++.+.+++++++|+|.++
T Consensus       240 ~~~~~~~~v~~~~~~g~d~vi  260 (368)
T TIGR02818       240 YDKPIQEVIVEITDGGVDYSF  260 (368)
T ss_pred             cchhHHHHHHHHhCCCCCEEE
Confidence            124567778888877664443

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=4.5e-41  Score=312.04  Aligned_cols=265  Identities=52%  Similarity=0.889  Sum_probs=217.1

Q ss_pred             CCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCC
Q 023561           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      +++++|||+++.++++++++++++.|.|+++||+||++++|||++|++.+.|..+. ..+|.++|||++|+|+++|++++
T Consensus         6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~   85 (381)
T PLN02740          6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE   85 (381)
T ss_pred             ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence            46678999999999887999999999999999999999999999999999887532 35789999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCC-CCCCCCcccccc-CCceeecccccceeeeeEEeecccEE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPRDQTSRFKDL-RGETIHHFVSVSSFSEYTVLDIAHVV  168 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~  168 (280)
                      .|++||+|++.+..+|+.|.+|+.+..+.|++.......+ ...+|..+++.. .+....++...|+|+||++++..+++
T Consensus        86 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~  165 (381)
T PLN02740         86 DLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVV  165 (381)
T ss_pred             cCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeE
Confidence            9999999999999999999999999999999865321000 000110000000 00001112224699999999999999


Q ss_pred             EcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       169 ~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ++|+++++++++.+.+++.|+|.++++..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus       166 ~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  245 (381)
T PLN02740        166 KIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT  245 (381)
T ss_pred             ECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc
Confidence            99999999999999999999999887888999999999999999999999999999997799999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++|+++ .++++.+.+++++++++|.+.
T Consensus       246 ~~i~~~~-~~~~~~~~v~~~~~~g~dvvi  273 (381)
T PLN02740        246 DFINPKD-SDKPVHERIREMTGGGVDYSF  273 (381)
T ss_pred             EEEeccc-ccchHHHHHHHHhCCCCCEEE
Confidence            9998775 113477888888876664443

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.2e-40  Score=307.69  Aligned_cols=261  Identities=48%  Similarity=0.801  Sum_probs=218.4

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      .+|||+++.+.+++++++++|.|.|+++||+||++++|+|++|++++.|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v   80 (368)
T cd08300           1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKP   80 (368)
T ss_pred             CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCC
Confidence            36899999888888999999999999999999999999999999999887665567999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|++.+..+|+.|.+|+.++++.|++.....+.|...+|..++.. +|....++.+.|+|+||+.++...++++|+++
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~-~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l  159 (368)
T cd08300          81 GDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSC-KGKPIYHFMGTSTFSEYTVVAEISVAKINPEA  159 (368)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCcccccc-CCcccccccccccceeEEEEchhceEeCCCCC
Confidence            99999988899999999999999999875432122333333111100 01111112234699999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++.+++++.+++.|+|+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++++++
T Consensus       160 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~  239 (368)
T cd08300         160 PLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPK  239 (368)
T ss_pred             ChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEccc
Confidence            99999999999999999887888999999999999999999999999999997799999999999999999999999987


Q ss_pred             CCCCccHHHHHHHhcCCCceEEE
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      + .++++.+.+++++++|+|.++
T Consensus       240 ~-~~~~~~~~v~~~~~~g~d~vi  261 (368)
T cd08300         240 D-HDKPIQQVLVEMTDGGVDYTF  261 (368)
T ss_pred             c-cchHHHHHHHHHhCCCCcEEE
Confidence            5 112578888888877765544

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=3.9e-40  Score=304.26  Aligned_cols=261  Identities=53%  Similarity=0.911  Sum_probs=216.0

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      ++|||+++.++++++++++++.|+|+++||+||+.++++|++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            37999999988888999999999999999999999999999999999887655567999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCC-CCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~-~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      ||+|++.+..+|++|.+|+.+.++.|++.......|... ++..++. ..|....++...|+|+||++++..+++++|++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  159 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPE  159 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCCC
Confidence            999999999999999999999999999864321112211 0000000 00111111223468999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++++++++.+.+.|+|.++++..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++.++++
T Consensus       160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~  239 (369)
T cd08301         160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNP  239 (369)
T ss_pred             CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcc
Confidence            99999999999999999988888899999999999999999999999999999779999999999999999999999987


Q ss_pred             CCCCCccHHHHHHHhcCCCceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      .+ .++++.+.++++++++++.+.
T Consensus       240 ~~-~~~~~~~~v~~~~~~~~d~vi  262 (369)
T cd08301         240 KD-HDKPVQEVIAEMTGGGVDYSF  262 (369)
T ss_pred             cc-cchhHHHHHHHHhCCCCCEEE
Confidence            64 113567778888776664443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=2.1e-40  Score=306.33  Aligned_cols=256  Identities=36%  Similarity=0.571  Sum_probs=214.3

Q ss_pred             eeeeeecCCCC--------CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCC
Q 023561           17 CRAAIATAPGE--------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        17 ~~a~~~~~~g~--------~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      |||+++.++|.        .+++++++.|+|+++||+|||.+++||++|++++.|..+. .+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence            78999998763        4899999999999999999999999999999999887543 46899999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEE
Q 023561           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (280)
Q Consensus        89 v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  168 (280)
                      +.+|++||+|++.+..+|++|..|+.|.+++|++.......|...+|...+. .++....+..+.|+|+||+.++..+++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~~~~~~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLR-LRGGEINHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCccccc-ccCcccccccCcccceeeEEecccceE
Confidence            9999999999988888999999999999999998654322332222210000 000001111123599999999999999


Q ss_pred             EcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       169 ~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ++|+++++++|+.+.++..|||.++.+..++++|++|+|.|+|++|++++|+|+.+|++.|++++.+++|+++++++|++
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  238 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT  238 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999999999887888999999999999999999999999999997799999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++++   +++.+.+++++++++|.++
T Consensus       239 ~~i~~~~---~~~~~~i~~~~~~g~d~vi  264 (371)
T cd08281         239 ATVNAGD---PNAVEQVRELTGGGVDYAF  264 (371)
T ss_pred             eEeCCCc---hhHHHHHHHHhCCCCCEEE
Confidence            9999877   7888889988877765444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=8.5e-40  Score=300.90  Aligned_cols=248  Identities=33%  Similarity=0.548  Sum_probs=213.3

Q ss_pred             eeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        16 ~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      ||||+++.++++++++++++.|+|+++||+|||.++|+|++|++.+.|..+. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG   79 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence            6999999999988999999999999999999999999999999999886542 468999999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCc-CCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      |+|++.+..+|+.|.+|..|+.++|+...... ..+. .+|         .......+.|+|+||+.++..+++++|+++
T Consensus        80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~-~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~  149 (358)
T TIGR03451        80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTL-TDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPAA  149 (358)
T ss_pred             CEEEEccCCCCCCChHHhCcCcccCcCcccccccccc-ccC---------cccccccccccccceEEEehhheEECCCCC
Confidence            99999999999999999999999998632210 0000 011         000001123599999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++++|+.+.+.+.++|.++.+...+++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++++++
T Consensus       150 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~  229 (358)
T TIGR03451       150 DPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS  229 (358)
T ss_pred             ChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCC
Confidence            99999999999999998777788899999999999999999999999999996799999999999999999999999987


Q ss_pred             CCCCccHHHHHHHhcCC-CceEEE
Q 023561          255 NCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +   +++.+.+++++++ |+|.+.
T Consensus       230 ~---~~~~~~i~~~~~~~g~d~vi  250 (358)
T TIGR03451       230 G---TDPVEAIRALTGGFGADVVI  250 (358)
T ss_pred             C---cCHHHHHHHHhCCCCCCEEE
Confidence            7   7888899999887 775444

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.7e-39  Score=296.16  Aligned_cols=234  Identities=28%  Similarity=0.392  Sum_probs=208.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.+++. +++++++.|.|+++||+||+.++++|++|++.+.+.... ...|.++|||++|+|+++|+++++|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            68999988765 999999999999999999999999999999988765432 2358899999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|++.+...|+.|.+|+.|+++.|++...  .+|...+|                   +|+||++++..+++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence            999999999999999999999999987653  24555556                   999999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +++|+++.+++.|+|+++ +...+++|++|||+|+|++|++++|+|+.+|++.|++++++++|+++++++|+++++++++
T Consensus       139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~  217 (339)
T cd08239         139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ  217 (339)
T ss_pred             HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc
Confidence            999999999999999975 5678899999999999999999999999999955999999999999999999999999876


Q ss_pred             CCCccHHHHHHHhcCC-CceEEE
Q 023561          256 CGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       256 ~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                         ++ .+.+++++++ ++|.+.
T Consensus       218 ---~~-~~~~~~~~~~~~~d~vi  236 (339)
T cd08239         218 ---DD-VQEIRELTSGAGADVAI  236 (339)
T ss_pred             ---ch-HHHHHHHhCCCCCCEEE
Confidence               55 6778888877 775554

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=4.4e-39  Score=298.48  Aligned_cols=260  Identities=46%  Similarity=0.824  Sum_probs=210.8

Q ss_pred             CCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC
Q 023561           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      +...+|||+++.++++.+++++++.|+|+++||+|||.++|+|++|++.+.+..   .+|.++|||++|+|+++|+++++
T Consensus         8 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~   84 (378)
T PLN02827          8 PNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTE   84 (378)
T ss_pred             cccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcc
Confidence            344679999999888779999999999999999999999999999999887652   35889999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCC-CCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~-~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      |++||+|++.+..+|++|.+|+.|.+++|++.... ..|... ++..+|. ..|....++...|+|+||+.++...++++
T Consensus        85 ~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~~i  162 (378)
T PLN02827         85 FEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (378)
T ss_pred             cCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCcccccccccccceeeEEechhheEEC
Confidence            99999999998899999999999999999874321 011100 0000000 00000000012359999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      |+++++++++.+.+.+.++|.++++..++++|++|||+|+|++|++++|+|+++|++.|++++.+++|+++++++|++++
T Consensus       163 P~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~  242 (378)
T PLN02827        163 DPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDF  242 (378)
T ss_pred             CCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEE
Confidence            99999999999988989999877777889999999999999999999999999999778899989999999999999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++ .++++.+.+++++++|+|.+.
T Consensus       243 i~~~~-~~~~~~~~v~~~~~~g~d~vi  268 (378)
T PLN02827        243 INPND-LSEPIQQVIKRMTGGGADYSF  268 (378)
T ss_pred             Ecccc-cchHHHHHHHHHhCCCCCEEE
Confidence            98764 113677788888876765443

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1.7e-38  Score=293.07  Aligned_cols=259  Identities=48%  Similarity=0.846  Sum_probs=214.6

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      +++||+++.+.+++++++++|.|.|.++||+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++++++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence            4689999998887799999999999999999999999999999999988664 357899999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|++.+..+|++|.+|+.|.+++|++..+. ..|...+|.-++.. .|.-..++.+.|+|+||++++..+++++|+++
T Consensus        80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l  157 (365)
T cd08277          80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFTC-KGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA  157 (365)
T ss_pred             CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCcccccc-CCcccccccccccceeeEEEchhheEECCCCC
Confidence            99999988899999999999999999986542 11222222100000 00000011224699999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++++++++.+++.|+|+++.+...+++|++|+|+|+|++|++++++|+.+|+++|++++++++|+++++++|++++++++
T Consensus       158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~  237 (365)
T cd08277         158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK  237 (365)
T ss_pred             CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence            99999999999999999877888999999999999999999999999999997799999999999999999999999876


Q ss_pred             CCCCccHHHHHHHhcCCCceEEE
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      + .+.++.+.+++++++++|.+.
T Consensus       238 ~-~~~~~~~~~~~~~~~g~d~vi  259 (365)
T cd08277         238 D-SDKPVSEVIREMTGGGVDYSF  259 (365)
T ss_pred             c-ccchHHHHHHHHhCCCCCEEE
Confidence            5 113457778888776665443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=6.8e-39  Score=291.08  Aligned_cols=212  Identities=27%  Similarity=0.313  Sum_probs=189.8

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcC-CCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~-~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++.+++.+  ++++|+|.|.|+++||||||+++|||+.|..+++|. .+...+|.++|.|++|+|+++|++++.|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            688999888876  889999999999999999999999999999999997 33356899999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+... .                        .+  .+                   |+|+||+.+|+++++++|++
T Consensus        81 ~GdrV~~~~-~------------------------~~--~~-------------------G~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALG-G------------------------VG--RD-------------------GGYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEcc-C------------------------CC--CC-------------------CcceeEEEecHHHceeCCCC
Confidence            999997542 0                        00  23                   39999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +|+++||++++++.|||+++....++++|++|||+|+ |++|++++|+||++|+ .++++..++++.++++++|++++++
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~  193 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVIN  193 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEc
Confidence            9999999999999999999999899999999999997 9999999999999998 6666666777777999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      |++   +++.+.++++++| |+|.|..
T Consensus       194 y~~---~~~~~~v~~~t~g~gvDvv~D  217 (326)
T COG0604         194 YRE---EDFVEQVRELTGGKGVDVVLD  217 (326)
T ss_pred             CCc---ccHHHHHHHHcCCCCceEEEE
Confidence            998   7899999999999 8866653

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=1.9e-38  Score=295.46  Aligned_cols=241  Identities=26%  Similarity=0.339  Sum_probs=197.3

Q ss_pred             eeeeeeecCCCCCcEEEEeecCCCC-------CCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCC
Q 023561           16 QCRAAIATAPGEPLVIDEVIVDPPN-------SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        16 ~~~a~~~~~~g~~l~~~~~~~p~~~-------~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      -|||+++.++++ ++++++|.|+|+       ++||||||+++|||++|++++.|..+ ..+|.++|||++|+|+++|++
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~   79 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD   79 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence            378999998887 999999999874       68999999999999999999988654 246899999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCc---CCCCCCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        89 v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                      +.+|++||||++.+...|+.|.+|+.|++++|++.....   .+|+...|               ...|+|+||+.+|..
T Consensus        80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~~  144 (393)
T TIGR02819        80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG---------------GWVGGQSEYVMVPYA  144 (393)
T ss_pred             cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC---------------CCCCceEEEEEechh
Confidence            999999999999999999999999999999999753210   01211000               002499999999964


Q ss_pred             --cEEEcCCCCCh----hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          166 --HVVKVDPTVPP----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       166 --~~~~iP~~ls~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                        +++++|++++.    .+++.+.+++.++|+++ ...++++|++|+|.|+|++|++++++|+.+|++.+++++.+++|+
T Consensus       145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~  223 (393)
T TIGR02819       145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL  223 (393)
T ss_pred             hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence              79999998754    34667778999999965 567899999999988899999999999999997677778888999


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          240 EIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       240 ~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++++|++.+++.++   .++.+.+.+++++ ++|.++
T Consensus       224 ~~a~~~Ga~~v~~~~~---~~~~~~v~~~~~~~g~Dvvi  259 (393)
T TIGR02819       224 AQARSFGCETVDLSKD---ATLPEQIEQILGEPEVDCAV  259 (393)
T ss_pred             HHHHHcCCeEEecCCc---ccHHHHHHHHcCCCCCcEEE
Confidence            9999999975443333   5677888888887 665443

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1e-38  Score=292.91  Aligned_cols=238  Identities=27%  Similarity=0.348  Sum_probs=196.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCc-ccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR-ILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~-i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |++++++.+++..++++.+.|.+.++||+|||.++|||+||++.+.+..+....|. ++|||++|+|+++| .++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            56777777666455888877778999999999999999999999999877655565 99999999999999 77889999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCc--CCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE-cCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI--SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK-VDP  172 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~--~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-iP~  172 (280)
                      |||++.+..+|+.|.+|+.|.+++|++..+..  .++...+|                   +|+||+.+|.++.+. +|+
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G-------------------~~aEyv~vp~~~~~~~~pd  140 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG-------------------GFAEYVRVPADFNLAKLPD  140 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC-------------------ceEEEEEeccccCeecCCC
Confidence            99999999999999999999999999654310  11111344                   999999999755555 578


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcEEE
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV  251 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~vi  251 (280)
                      ++ +.+++++..++++++++.......+++++|+|+|+|++|++++++++.+|+.+||+++.+++|++++++ .|++.++
T Consensus       141 ~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~  219 (350)
T COG1063         141 GI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV  219 (350)
T ss_pred             CC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee
Confidence            88 455555566999998864555566666799999999999999999999999999999999999999999 7777777


Q ss_pred             cCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          252 NSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +..+   ++....++++++| |+|.++.
T Consensus       220 ~~~~---~~~~~~~~~~t~g~g~D~vie  244 (350)
T COG1063         220 NPSE---DDAGAEILELTGGRGADVVIE  244 (350)
T ss_pred             cCcc---ccHHHHHHHHhCCCCCCEEEE
Confidence            7665   4778888899999 8866653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-38  Score=288.07  Aligned_cols=214  Identities=23%  Similarity=0.412  Sum_probs=186.8

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhh-cCCC--CCCCCcccccceeEEEEEeCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~-g~~~--~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      ..++||++++++++ +++++++.| +.++||||||.++|||++|++++. +...  ...+|.++|||++|+|+++  +++
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            45789999999888 999999987 689999999999999999999875 3322  1356999999999999999  788


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-----CCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-----PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-----~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                      +|++||+|++.+..+|++|.+|+.|++++|++..+   +|.     ..+|                   +|+||++++.+
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~~~~~G-------------------~~aey~~v~~~  135 (343)
T PRK09880         78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYFPHVDG-------------------GFTRYKVVDTA  135 (343)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccccCCCCC-------------------ceeeeEEechH
Confidence            99999999999999999999999999999998654   222     1234                   99999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       166 ~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .++++|+++++++++. ..+++++|+++ ......+|++|+|+|+|++|++++|+|+.+|+++|++++++++|+++++++
T Consensus       136 ~~~~~P~~l~~~~aa~-~~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l  213 (343)
T PRK09880        136 QCIPYPEKADEKVMAF-AEPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM  213 (343)
T ss_pred             HeEECCCCCCHHHHHh-hcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence            9999999999987664 45788999976 455667899999999999999999999999997899999999999999999


Q ss_pred             CCcEEEcCCC
Q 023561          246 GVTEFVNSKN  255 (280)
Q Consensus       246 Ga~~vi~~~~  255 (280)
                      |+++++|+++
T Consensus       214 Ga~~vi~~~~  223 (343)
T PRK09880        214 GADKLVNPQN  223 (343)
T ss_pred             CCcEEecCCc
Confidence            9999999876

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=4.9e-37  Score=284.26  Aligned_cols=264  Identities=44%  Similarity=0.738  Sum_probs=216.8

Q ss_pred             CCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      +++-.+|||+++.+++++++++++|.|+|.++||+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++
T Consensus         2 ~~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~   80 (373)
T cd08299           2 AGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVT   80 (373)
T ss_pred             CcccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCc
Confidence            34557899999998887899999999999999999999999999999999988763 34688999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      .+++||+|++.+..+|++|.+|+.++++.|++.......|...++.-+++ -+|.+..++...|+|+||++++.++++++
T Consensus        81 ~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~l  159 (373)
T cd08299          81 TVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKI  159 (373)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeC
Confidence            99999999998889999999999999999998643110122111100000 01122223333469999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      |+++++.+++++.+++.++|.++.+..++++|++|+|+|+|++|++++++|+.+|+++|++++++++|++.++++|++++
T Consensus       160 P~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~  239 (373)
T cd08299         160 DAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATEC  239 (373)
T ss_pred             CCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceE
Confidence            99999999999999999999988888899999999999889999999999999999779999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++.+ ..+++.+.+.+++++++|.+.
T Consensus       240 i~~~~-~~~~~~~~v~~~~~~~~d~vl  265 (373)
T cd08299         240 INPQD-YKKPIQEVLTEMTDGGVDFSF  265 (373)
T ss_pred             ecccc-cchhHHHHHHHHhCCCCeEEE
Confidence            98765 112367777777766664443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=1.7e-37  Score=285.99  Aligned_cols=224  Identities=24%  Similarity=0.349  Sum_probs=190.8

Q ss_pred             CCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC
Q 023561           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      .-+++++++.+.+..+++++.+++.|+|+++||+|||.++|||++|++++.|..+...+|.++|||++|+|+++|+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~   87 (360)
T PLN02586          8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK   87 (360)
T ss_pred             hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence            34577888888887777999999999999999999999999999999999886554457899999999999999999999


Q ss_pred             CCCCCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCc----CCCCCCCCCccccccCCceeecccccceeeeeEEeeccc
Q 023561           92 VVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (280)
Q Consensus        92 ~~~Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  166 (280)
                      |++||+|++.+. .+|++|.+|+.|.+++|++..+..    +.|...+|                   +|+||++++.+.
T Consensus        88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~  148 (360)
T PLN02586         88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYG-------------------GYSDMIVVDQHF  148 (360)
T ss_pred             cCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCC-------------------ccceEEEEchHH
Confidence            999999986554 579999999999999999864320    00222234                   999999999999


Q ss_pred             EEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHHc
Q 023561          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRF  245 (280)
Q Consensus       167 ~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~-~~~~~~~  245 (280)
                      ++++|+++++++++.+.+...|+|+++.+...+++|++|+|.|+|++|++++|+|+.+|+ +|++++.++++ .+.++++
T Consensus       149 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~  227 (360)
T PLN02586        149 VLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRL  227 (360)
T ss_pred             eeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhC
Confidence            999999999999999999999999977666667899999999999999999999999999 67777666554 5566789


Q ss_pred             CCcEEEcCCC
Q 023561          246 GVTEFVNSKN  255 (280)
Q Consensus       246 Ga~~vi~~~~  255 (280)
                      |+++++++.+
T Consensus       228 Ga~~vi~~~~  237 (360)
T PLN02586        228 GADSFLVSTD  237 (360)
T ss_pred             CCcEEEcCCC
Confidence            9999998764

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=3.9e-37  Score=282.29  Aligned_cols=230  Identities=26%  Similarity=0.449  Sum_probs=201.1

Q ss_pred             eeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcC-CCCCCCCcccccceeEEEEEeCCCCCCCCCCCEE
Q 023561           20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (280)
Q Consensus        20 ~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~-~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V   98 (280)
                      +++.+++++++++++|.|.|+++||+||+.++++|++|++.+.+. .+...+|.++|||++|+|+++|+++..+ +||+|
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            567778877999999999999999999999999999999887443 3233568999999999999999999887 99999


Q ss_pred             EecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC------
Q 023561           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP------  172 (280)
Q Consensus        99 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~------  172 (280)
                      ++.+..+|+.|.+|+.|++++|.....   .|...+|                   +|+||+.++.+.++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccccc
Confidence            999999999999999999999987543   3444455                   999999999999999999      


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      ++++++++.+.+++.++|+++ ...++++|++|+|+|+|++|++++++|+.+|+ +|++++++++|+++++++|++++++
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~  216 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLN  216 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEec
Confidence            899999999989999999975 45789999999999999999999999999999 7999999999999999999999998


Q ss_pred             CCCCCCccHHHHHHHhcCC-Cce
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLL  274 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~  274 (280)
                      +.+.+.+++.+.+++++++ |++
T Consensus       217 ~~~~~~~~~~~~~~~~t~~~g~d  239 (349)
T TIGR03201       217 PKDKSAREVKKLIKAFAKARGLR  239 (349)
T ss_pred             CccccHHHHHHHHHhhcccCCCC
Confidence            7662223677888888887 775

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=9.4e-37  Score=277.86  Aligned_cols=212  Identities=24%  Similarity=0.299  Sum_probs=188.7

Q ss_pred             eeeecCCCC----CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           19 AAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        19 a~~~~~~g~----~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      |+++.++|.    .++++++|.|+|+++||+||+.++|+|++|++++.|.++....|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAV   80 (329)
T ss_pred             CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCC
Confidence            355655653    3899999999999999999999999999999999887654445789999999999999999999999


Q ss_pred             CCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           95 GDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        95 Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      ||+|++.+. .+|+.|.+|+.|.+++|++..+   .|...+|                   +|+||+.++..+++++|++
T Consensus        81 Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~  138 (329)
T TIGR02822        81 GDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPTG  138 (329)
T ss_pred             CCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCCC
Confidence            999987654 4799999999999999998664   4544455                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++++++.+.+++.|||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++|+
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~  216 (329)
T TIGR02822       139 YDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGA  216 (329)
T ss_pred             CCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceeccc
Confidence            99999999999999999976 56889999999999999999999999999999 79999999999999999999999885


Q ss_pred             C
Q 023561          254 K  254 (280)
Q Consensus       254 ~  254 (280)
                      .
T Consensus       217 ~  217 (329)
T TIGR02822       217 Y  217 (329)
T ss_pred             c
Confidence            4

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-36  Score=276.76  Aligned_cols=233  Identities=26%  Similarity=0.416  Sum_probs=199.8

Q ss_pred             eeeeeecCCCCCcEEEEeecCCC-CCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++++++. ++++++|.|.| .++||+|||.++++|++|...+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG   78 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG   78 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence            68999998876 99999999998 589999999999999999875432211 1358899999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|++.+..+|+.|.+|+.|++++|+...+   +|...+|                   +|+||+.++...++++|++++
T Consensus        79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~s  136 (347)
T PRK10309         79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDMP  136 (347)
T ss_pred             CEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCCC
Confidence            999999999999999999999999987543   4444455                   999999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +++++.+. ++.+++.+ ++...+++|++|+|+|+|++|++++|+|+.+|++.|++++++++|+++++++|+++++++++
T Consensus       137 ~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~  214 (347)
T PRK10309        137 IEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE  214 (347)
T ss_pred             HHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc
Confidence            99998874 56667775 46678899999999999999999999999999966899999999999999999999999876


Q ss_pred             CCCccHHHHHHHhcCC-CceEEEec
Q 023561          256 CGDKSVSQVLLSIYDL-PLLTISVS  279 (280)
Q Consensus       256 ~~~~~~~~~v~~~~~g-g~~~v~~~  279 (280)
                         .+ .+.+.+++.+ +++++++|
T Consensus       215 ---~~-~~~~~~~~~~~~~d~~v~d  235 (347)
T PRK10309        215 ---MS-APQIQSVLRELRFDQLILE  235 (347)
T ss_pred             ---cC-HHHHHHHhcCCCCCeEEEE
Confidence               44 5567777777 77756655

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=8e-36  Score=275.23  Aligned_cols=258  Identities=34%  Similarity=0.579  Sum_probs=216.9

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      ++|||+++.++++++++++++.|.+.++||+||+.++++|++|+.+..+.++ ...|.++|||++|+|+++|+++..|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            5789999999877799999999999999999999999999999999988765 346889999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCcee-ecccccceeeeeEEeecccEEEcCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI-HHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      ||+|++.+. .|+.|.+|+.++.++|+.....+..|..++|.-.+++..|.++ .+++..|+|++|+.++..+++++|++
T Consensus        80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~  158 (365)
T cd08278          80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD  158 (365)
T ss_pred             CCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence            999998764 8999999999999999986654444444443211111111110 11334569999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++.+++.+++++.||+.++.....++++++|+|+|+|.+|++++++|+++|++.+++++++++|.++++++|++.++++
T Consensus       159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~  238 (365)
T cd08278         159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINP  238 (365)
T ss_pred             CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecC
Confidence            99999999999999999988888889999999999889999999999999999779999999999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCCCceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++   .++.+.+++.++.+++.+.
T Consensus       239 ~~---~~~~~~v~~~~~~~~d~vl  259 (365)
T cd08278         239 KE---EDLVAAIREITGGGVDYAL  259 (365)
T ss_pred             CC---cCHHHHHHHHhCCCCcEEE
Confidence            76   7788888888833775554

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.5e-35  Score=273.46  Aligned_cols=258  Identities=42%  Similarity=0.720  Sum_probs=218.1

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      +||+++.++++++++++++.|.++++||+||+.++++|++|++.+.+..+ ...|.++|||++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd   79 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD   79 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence            57899998887799999999999999999999999999999999888754 34678999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      +|++.+..+|++|.+|+.+.+++|+...+.+..|...+|...|.- +|-...|+.+.|+|++|+.++.+.++++|+++++
T Consensus        80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~  158 (365)
T cd05279          80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL  158 (365)
T ss_pred             EEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCCCH
Confidence            999998899999999999999999998765444544444222210 1222234444569999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~  256 (280)
                      ++++++.+++.++|.++.+...+++|++|||+|+|++|++++++|+.+|+..|++++++++|++.++++|+++++++++ 
T Consensus       159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-  237 (365)
T cd05279         159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD-  237 (365)
T ss_pred             HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeeccccc-
Confidence            9999999899999998888889999999999988999999999999999977888888999999999999999998876 


Q ss_pred             CCccHHHHHHHhcCCCceEEE
Q 023561          257 GDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       257 ~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      .+.++.+.+++++++++|.+.
T Consensus       238 ~~~~~~~~l~~~~~~~~d~vi  258 (365)
T cd05279         238 QDKPIVEVLTEMTDGGVDYAF  258 (365)
T ss_pred             ccchHHHHHHHHhCCCCcEEE
Confidence            111677888888855765444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=5.9e-36  Score=275.01  Aligned_cols=214  Identities=26%  Similarity=0.325  Sum_probs=176.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC---CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++...+.+++++++|.|+|+++||||||+++|||++|++++.|.++.   ...|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            578888865544999999999999999999999999999999999987532   245789999999999999999 9999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      +||+|++.+..+|++|.+|+.|++++|+...+. ..|. ..+|                   +|+||++++.+.++++|+
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~G-------------------~~aey~~~~~~~~~~~P~  139 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLHG-------------------FMREYFVDDPEYLVKVPP  139 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCCc-------------------cceeEEEeccccEEECCC
Confidence            999999988889999999999999999875431 0121 1234                   899999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHH------HcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC---ChhHHHHHH
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGK  243 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~------~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~---~~~~~~~~~  243 (280)
                      +++ ++ +.+..++.+++.++..      ..+.++|++|+|+|+|++|++++|+||.+|+ +|+++++   +++|+++++
T Consensus       140 ~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~  216 (355)
T cd08230         140 SLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE  216 (355)
T ss_pred             CCC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH
Confidence            999 43 4444466665544322      2235789999999999999999999999999 7898887   688999999


Q ss_pred             HcCCcEEEcCCC
Q 023561          244 RFGVTEFVNSKN  255 (280)
Q Consensus       244 ~~Ga~~vi~~~~  255 (280)
                      ++|++. +++.+
T Consensus       217 ~~Ga~~-v~~~~  227 (355)
T cd08230         217 ELGATY-VNSSK  227 (355)
T ss_pred             HcCCEE-ecCCc
Confidence            999987 46554

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.1e-35  Score=275.34  Aligned_cols=230  Identities=23%  Similarity=0.324  Sum_probs=187.8

Q ss_pred             eeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEE
Q 023561           19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (280)
Q Consensus        19 a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V   98 (280)
                      +++..+.++++++.+++.|+|+++||+|||.++|||++|++++.|.++...+|.++|||++|+|+++|+++++|++||+|
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV   88 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV   88 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence            34444544569999999999999999999999999999999998875433568999999999999999999999999999


Q ss_pred             EecCCC-CCCCChhhcCCCCCCCCCCCCCc----CCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           99 IPHFLA-DCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        99 ~~~~~~-~c~~c~~c~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      ++.+.. +|+.|.+|+.|++++|++..+..    ..|...+|                   +|+||++++.++++++|++
T Consensus        89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~lP~~  149 (375)
T PLN02178         89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQG-------------------GYSDVIVVDHRFVLSIPDG  149 (375)
T ss_pred             EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCC-------------------ccccEEEEchHHeEECCCC
Confidence            866654 69999999999999999865310    01222234                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh-HHHHHHHcCCcEEE
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFV  251 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~-~~~~~~~~Ga~~vi  251 (280)
                      +++++++++.+...|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|++++.+++ +++.++++|+++++
T Consensus       150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i  228 (375)
T PLN02178        150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFL  228 (375)
T ss_pred             CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEE
Confidence            9999999999999999987644433 3689999999999999999999999999 6888876654 57888899999999


Q ss_pred             cCCCCCCccHHHHHHHhcCCCceE
Q 023561          252 NSKNCGDKSVSQVLLSIYDLPLLT  275 (280)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~gg~~~  275 (280)
                      ++.+   .   +.+.+.++ ++|.
T Consensus       229 ~~~~---~---~~v~~~~~-~~D~  245 (375)
T PLN02178        229 VTTD---S---QKMKEAVG-TMDF  245 (375)
T ss_pred             cCcC---H---HHHHHhhC-CCcE
Confidence            8754   2   34555553 4433

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=1.8e-35  Score=272.10  Aligned_cols=244  Identities=28%  Similarity=0.383  Sum_probs=207.9

Q ss_pred             eeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC------
Q 023561           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG------   91 (280)
Q Consensus        18 ~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~------   91 (280)
                      ||+++.++++.+++++++.|.|+++||+||+.++++|++|+....|.++...+|.++|||++|+|+++|+++..      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            78999998877999999999999999999999999999999999887653457889999999999999999986      


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCC-CCccccccCCceeecccccceeeeeEEeecc-cEEE
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVK  169 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~-G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~  169 (280)
                      |++||+|++.+..+|+.|.+|+.+.+++|++..+   +|...+ |.             ....|+|++|++++.+ ++++
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~~-------------~~~~g~~a~~~~v~~~~~~~~  145 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCDD-------------PHLSGGYAEHIYLPPGTAIVR  145 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchh---ccccccccC-------------CCCCcccceEEEecCCCceEE
Confidence            9999999999999999999999999999998765   332211 00             0012499999999986 7999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|++++..+++++++++.|||.++.+....++|++|||+|+|++|++++++|+.+|++.|+++++++++.++++++|+++
T Consensus       146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  225 (361)
T cd08231         146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA  225 (361)
T ss_pred             CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCe
Confidence            99999999999988899999998766666679999999988999999999999999977899999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++++....++.+.+++++++ ++|.++
T Consensus       226 vi~~~~~~~~~~~~~i~~~~~~~~~d~vi  254 (361)
T cd08231         226 TIDIDELPDPQRRAIVRDITGGRGADVVI  254 (361)
T ss_pred             EEcCcccccHHHHHHHHHHhCCCCCcEEE
Confidence            9988752222344678888887 775554

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=3.4e-35  Score=269.19  Aligned_cols=233  Identities=26%  Similarity=0.388  Sum_probs=203.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC-----------CCCCCcccccceeEEEEEe
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-----------PAVFPRILGHEAIGVVESV   85 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~-----------~~~~p~i~G~e~~G~V~~v   85 (280)
                      |||+++.+++. +++++++.|+|.++||+||+.++++|++|+..+.+...           ....|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            68999998776 99999999999999999999999999999887653211           0136889999999999999


Q ss_pred             CCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCC-CCCCccccccCCceeecccccceeeeeEEeec
Q 023561           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (280)
Q Consensus        86 G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  164 (280)
                      |++++.|++||+|+..+..+|++|.+|+.+..++|+...+   .|+. .+|                   +|++|+.++.
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~a~~~~~~~  137 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGGG-------------------GFAEYVVVPA  137 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCCC-------------------ceeeEEEech
Confidence            9999999999999999999999999999999999987542   2221 134                   8999999999


Q ss_pred             ccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       165 ~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ..++++|+++++++++.+ .+..|||.++ ...++++|++|+|+|+|.+|++++|+|+.+|++.|+++++++++.+++++
T Consensus       138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~  215 (351)
T cd08233         138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE  215 (351)
T ss_pred             HHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            999999999999998876 5788999976 78889999999999999999999999999999789999999999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          245 FGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       245 ~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +|++.++++++   .++.+.+++++++ ++|.+.
T Consensus       216 ~ga~~~i~~~~---~~~~~~l~~~~~~~~~d~vi  246 (351)
T cd08233         216 LGATIVLDPTE---VDVVAEVRKLTGGGGVDVSF  246 (351)
T ss_pred             hCCCEEECCCc---cCHHHHHHHHhCCCCCCEEE
Confidence            99999999887   7888999998887 665554

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=6.8e-36  Score=253.07  Aligned_cols=215  Identities=26%  Similarity=0.271  Sum_probs=198.3

Q ss_pred             CCcceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      ..++..|.+++++.|..  +++++.|+|+|.++|++||..++|+|+.|..+.+|.+....+|.++|-|.+|+|+++|+++
T Consensus         4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gv   83 (336)
T KOG1197|consen    4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGV   83 (336)
T ss_pred             CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCc
Confidence            35677899999988865  9999999999999999999999999999999999999666889999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      .++++||||+...                              +.|                   .|+|++.+|...+++
T Consensus        84 tdrkvGDrVayl~------------------------------~~g-------------------~yaee~~vP~~kv~~  114 (336)
T KOG1197|consen   84 TDRKVGDRVAYLN------------------------------PFG-------------------AYAEEVTVPSVKVFK  114 (336)
T ss_pred             cccccccEEEEec------------------------------cch-------------------hhheeccccceeecc
Confidence            9999999996321                              233                   899999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +|+.+++++||++.....|||.-+++..++++|++|||+.+ |++|+++.|++|+.|+ .+|++..+++|++.+++.|++
T Consensus       115 vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~  193 (336)
T KOG1197|consen  115 VPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAE  193 (336)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCc
Confidence            99999999999999999999998889999999999999986 9999999999999999 899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCC-CceEEEec
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDL-PLLTISVS  279 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~~  279 (280)
                      +.|+++.   +++.+++.+.|+| |+|.+..+
T Consensus       194 h~I~y~~---eD~v~~V~kiTngKGVd~vyDs  222 (336)
T KOG1197|consen  194 HPIDYST---EDYVDEVKKITNGKGVDAVYDS  222 (336)
T ss_pred             ceeeccc---hhHHHHHHhccCCCCceeeecc
Confidence            9999998   9999999999999 88776643

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=6.4e-35  Score=267.39  Aligned_cols=237  Identities=28%  Similarity=0.330  Sum_probs=207.1

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.+++. +++++++.|.+.++||+||++++++|++|++.+.+..+....|.++|||++|+|+++|++++++++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            68999999886 89999999999999999999999999999998887665445689999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc--cEEEcCCCC
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV  174 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iP~~l  174 (280)
                      +|++.+..+|+.|..|..|+.+.|+........+...+|                   +|++|+.++..  .++++|+++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g-------------------~~~~y~~v~~~~~~~~~lP~~~  140 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDG-------------------VFAEYFHVNDADANLAPLPDGL  140 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCc-------------------ceeEEEEcchhhCceEECCCCC
Confidence            999988889999999999999999875311001111234                   89999999974  899999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++.+++.++..+.|+|++ .+...+++|++|||+|+|++|++++++|+.+|++.+++++++++|.++++++|++++++++
T Consensus       141 ~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  219 (351)
T cd08285         141 TDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK  219 (351)
T ss_pred             CHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCC
Confidence            999999998899999997 4778899999999998899999999999999997799999999999999999999999987


Q ss_pred             CCCCccHHHHHHHhcCC-CceEEE
Q 023561          255 NCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +   .++.+.+++++++ ++|.+.
T Consensus       220 ~---~~~~~~i~~~~~~~~~d~vl  240 (351)
T cd08285         220 N---GDVVEQILKLTGGKGVDAVI  240 (351)
T ss_pred             C---CCHHHHHHHHhCCCCCcEEE
Confidence            6   7788888888877 775554

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=7.8e-35  Score=268.00  Aligned_cols=225  Identities=23%  Similarity=0.338  Sum_probs=188.9

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      .+++|+++.++++++++++++.|+|+++||+||+.++++|++|++.+.|..+...+|.++|||++|+|+++|+++++|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~   87 (357)
T PLN02514          8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV   87 (357)
T ss_pred             ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence            35899999999999999999999999999999999999999999999887644456899999999999999999999999


Q ss_pred             CCEEEecCCC-CCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           95 GDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        95 Gd~V~~~~~~-~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      ||+|++.+.. .|++|.+|+.|.+++|++..+.... ....|              ....|+|+||++++...++++|++
T Consensus        88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~-~~~~g--------------~~~~G~~aey~~v~~~~~~~iP~~  152 (357)
T PLN02514         88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYND-VYTDG--------------KPTQGGFASAMVVDQKFVVKIPEG  152 (357)
T ss_pred             CCEEEEcCccccCCCChhHhCCCcccCCCccccccc-cccCC--------------ccCCCccccEEEEchHHeEECCCC
Confidence            9999865544 6999999999999999886432100 00011              011249999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~Ga~~vi~  252 (280)
                      +++++++.+++.+.|||.++......++|++|+|+|+|++|++++++|+.+|+ ++++++.++++++.+ +++|++++++
T Consensus       153 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~  231 (357)
T PLN02514        153 MAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLV  231 (357)
T ss_pred             CCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEec
Confidence            99999999999999999977655566899999999889999999999999999 677777777666554 5699998887


Q ss_pred             CCC
Q 023561          253 SKN  255 (280)
Q Consensus       253 ~~~  255 (280)
                      +.+
T Consensus       232 ~~~  234 (357)
T PLN02514        232 SSD  234 (357)
T ss_pred             CCC
Confidence            654

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=3.3e-34  Score=261.52  Aligned_cols=237  Identities=30%  Similarity=0.440  Sum_probs=209.5

Q ss_pred             eeeeeecCCCCCcEEEEeecCCC-CCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.+++. ++++++|.|.| .++||+||+.++++|++|+..+.+.++...+|.++|||++|+|+++|++++.+++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            57999988877 89999999999 89999999999999999999998877655678999999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc--cEEEcCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iP~~  173 (280)
                      |+|+..+..+|+.|.+|..|+.++|+........+...+|                   +|++|++++.+  +++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~~  140 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDG-------------------GQAEYVRVPYADMNLAKIPDG  140 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCC-------------------eeeEEEEecchhCeEEECCCC
Confidence            9999999999999999999999999987654222322334                   99999999987  99999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++++++.+++++.|||+++ ...+++++++|||.|+|.+|.+++++|+.+|...++++++++++.++++++|+++++++
T Consensus       141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  219 (347)
T cd05278         141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINP  219 (347)
T ss_pred             CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcC
Confidence            99999999999999999976 67789999999998889999999999999997578888888999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++   .++.+.+++++++ +++.+.
T Consensus       220 ~~---~~~~~~i~~~~~~~~~d~vl  241 (347)
T cd05278         220 KN---GDIVEQILELTGGRGVDCVI  241 (347)
T ss_pred             Cc---chHHHHHHHHcCCCCCcEEE
Confidence            87   6788888888876 665444

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=5.2e-34  Score=259.74  Aligned_cols=225  Identities=24%  Similarity=0.419  Sum_probs=200.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.++++++++++++.|++.++||+||+.++++|++|...+.|..+....|.++|||++|+|+++|+++.+|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            68999999866799999999999999999999999999999999988664445688999999999999999999999999


Q ss_pred             EEEecC-CCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        97 ~V~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      +|++.+ ...|++|.+|+.|+++.|.....   .|...+|                   +|++|+.++...++++|++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~~~  138 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDDLD  138 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCCCC
Confidence            998754 46799999999999999998764   3333344                   899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +.+++.+.+.+.|+|.++. ...+.++++|+|+|+|++|++++++|+.+|+ .++++++++++++.++++|+++++++.+
T Consensus       139 ~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~  216 (333)
T cd08296         139 AAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK  216 (333)
T ss_pred             HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC
Confidence            9999999999999999764 4589999999999999999999999999999 7999999999999999999999999876


Q ss_pred             CCCccHHHHHHHh
Q 023561          256 CGDKSVSQVLLSI  268 (280)
Q Consensus       256 ~~~~~~~~~v~~~  268 (280)
                         .++.+.++++
T Consensus       217 ---~~~~~~~~~~  226 (333)
T cd08296         217 ---EDVAEALQEL  226 (333)
T ss_pred             ---ccHHHHHHhc
Confidence               6677777766

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1.3e-33  Score=257.02  Aligned_cols=234  Identities=30%  Similarity=0.443  Sum_probs=209.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC---CCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||++++++++++++++++.|.+.++||+||+.++++|++|+..+.+.++   ...+|.++|||++|+|+++|+++..|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            68999998877899999999999999999999999999999999887654   235678999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+..+...|+.|..|..|..++|++..+   .|...+|                   +|++|+.++..+++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence            99999999989999999999999999999886   4555556                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHH-cCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      +++++++.+++.+.|||.++... ..+.++++|||+|+|.+|++++++|+.+| . +|+++.+++++.+.++++|+++++
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~  217 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVL  217 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEE
Confidence            99999999999999999987665 46888999999999789999999999999 6 788888899999999999999999


Q ss_pred             cCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          252 NSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++   . +.+.+++++++ +++.+.
T Consensus       218 ~~~~---~-~~~~i~~~~~~~~~dvvl  240 (340)
T cd05284         218 NASD---D-VVEEVRELTGGRGADAVI  240 (340)
T ss_pred             cCCc---c-HHHHHHHHhCCCCCCEEE
Confidence            9886   5 88888888877 665554

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=9.4e-34  Score=258.09  Aligned_cols=222  Identities=24%  Similarity=0.453  Sum_probs=195.1

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.+++. +++++++.|.|+++|++||+.++++|++|+..+.+..+...+|.++|||++|+|+.+|+++..+++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            68999998875 99999999999999999999999999999999988765445789999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      +|++.+..+|+.|.+|..+++++|++...   .+...+|                   +|++|+.++...++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~~~~  137 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRDG-------------------GFSEYAVVPAKNAHRIPDAIAD  137 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCce---EEEccCC-------------------cceeeEEechHHeEECcCCCCH
Confidence            99999999999999999999999976432   2222234                   8999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      .+++ +..++.++|. +.+..++++|++|+|+|+|++|++++++|+. +|++.+++++++++|+++++++|+++++++++
T Consensus       138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~  215 (339)
T PRK10083        138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ  215 (339)
T ss_pred             HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc
Confidence            8876 4457788885 6678899999999999999999999999996 69977899999999999999999999999876


Q ss_pred             CCCccHHHHHH
Q 023561          256 CGDKSVSQVLL  266 (280)
Q Consensus       256 ~~~~~~~~~v~  266 (280)
                         .++.+.+.
T Consensus       216 ---~~~~~~~~  223 (339)
T PRK10083        216 ---EPLGEALE  223 (339)
T ss_pred             ---ccHHHHHh
Confidence               56666664

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.7e-33  Score=257.88  Aligned_cols=233  Identities=25%  Similarity=0.411  Sum_probs=204.6

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC---------CCCCcccccceeEEEEEeCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---------AVFPRILGHEAIGVVESVGE   87 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~---------~~~p~i~G~e~~G~V~~vG~   87 (280)
                      |||+++++++. +++++++.|++.++||+||+.++++|+.|+..+.|....         ...|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998876 999999999999999999999999999999988875311         14577899999999999999


Q ss_pred             CCC--CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCC--CCCCccccccCCceeecccccceeeeeEEee
Q 023561           88 NVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP--RDQTSRFKDLRGETIHHFVSVSSFSEYTVLD  163 (280)
Q Consensus        88 ~v~--~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~--~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~  163 (280)
                      +++  .|++||+|+..+..+|++|..|+.|..+.|+...+   +|+.  .+|                   +|++|+.++
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g-------------------~~~~~~~~~  137 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVNG-------------------GMAEYMRFP  137 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCCC-------------------cceeeEEcc
Confidence            998  89999999999999999999999999999986542   3331  234                   899999999


Q ss_pred             cc-cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          164 IA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       164 ~~-~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+ .++++|+++++.+++++ .++.|+|.++ +..++++|++|+|.|+|.+|.+++++|+++|+..+++++++++|.+++
T Consensus       138 ~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~  215 (350)
T cd08256         138 KEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALA  215 (350)
T ss_pred             cccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHH
Confidence            87 67899999999999988 7999999976 788999999999977799999999999999997788999999999999


Q ss_pred             HHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          243 KRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       243 ~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++|++.++++++   .++.+.+.+++++ ++|.+.
T Consensus       216 ~~~g~~~v~~~~~---~~~~~~~~~~~~~~~vdvvl  248 (350)
T cd08256         216 RKFGADVVLNPPE---VDVVEKIKELTGGYGCDIYI  248 (350)
T ss_pred             HHcCCcEEecCCC---cCHHHHHHHHhCCCCCCEEE
Confidence            9999999998876   7888889998887 775544

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=4.9e-34  Score=261.18  Aligned_cols=205  Identities=21%  Similarity=0.176  Sum_probs=170.2

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC----CCCCcccccceeEEEEEeCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~----~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      +..||++++++++ +++++++.|+ +++||||||+++|||++|++++.|.+..    ..+|.++|||++|+|+++|.+  
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            3578999999987 9999999995 9999999999999999999999987532    257999999999999998764  


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      +|++||||++.+..+|+ |..|  +..++|++..+   .|...+|                   +|+||+++|.++++++
T Consensus        77 ~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  131 (341)
T cd08237          77 TYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKL  131 (341)
T ss_pred             ccCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEEC
Confidence            79999999998887777 4455  35677876543   2333345                   8999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHH--HcCCCCCCEEEEECccHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHHcCC
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~G~g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      |+++++++|+++. +++++|+++..  ...+++|++|+|+|+|++|++++|+++. +|..+|++++++++|+++++++++
T Consensus       132 P~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~  210 (341)
T cd08237         132 PDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE  210 (341)
T ss_pred             CCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc
Confidence            9999999887654 88899987643  3456889999999999999999999986 666589999999999999887665


Q ss_pred             cE
Q 023561          248 TE  249 (280)
Q Consensus       248 ~~  249 (280)
                      +.
T Consensus       211 ~~  212 (341)
T cd08237         211 TY  212 (341)
T ss_pred             ee
Confidence            43

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=4.7e-33  Score=256.49  Aligned_cols=255  Identities=41%  Similarity=0.634  Sum_probs=212.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.+++.++++++++.|.+.++||+||+.++++|+.|...+.+.++ ..+|.++|+|++|+|+++|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD   79 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence            68999999888899999999999999999999999999999999888765 35678999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      +|+..+..+|++|.+|..++.++|+...+.. +|...++..++.- -|.......+.|+|++|+.++.+.++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  157 (363)
T cd08279          80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGIL-GGQLPDGTRRFTA-DGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL  157 (363)
T ss_pred             EEEECCCCCCCCChhhcCCCcccCccccccc-ccccCCCcccccc-cCccccccccCccceeeEEeccccEEECCCCCCh
Confidence            9999999999999999999999998764320 1111111000000 0001101122359999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~  256 (280)
                      .+++++.+++.++|.++.+...+.++++|+|+|+|.+|.+++++|+.+|++.|+++.+++++.++++++|++++++.+. 
T Consensus       158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~-  236 (363)
T cd08279         158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE-  236 (363)
T ss_pred             HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCC-
Confidence            9999999999999998888889999999999977999999999999999966999999999999999999999998876 


Q ss_pred             CCccHHHHHHHhcCC-CceEEE
Q 023561          257 GDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       257 ~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                        .++.+.+++++.+ +++.+.
T Consensus       237 --~~~~~~l~~~~~~~~vd~vl  256 (363)
T cd08279         237 --DDAVEAVRDLTDGRGADYAF  256 (363)
T ss_pred             --ccHHHHHHHHcCCCCCCEEE
Confidence              6788888888866 665443

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=1.2e-32  Score=256.06  Aligned_cols=248  Identities=27%  Similarity=0.366  Sum_probs=207.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCC-CCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~-~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.++++ +++++++.|.|. ++||+||+.++++|++|+..+.|.++...+|.++|||++|+|+++|+++.++++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            68999988765 999999999984 9999999999999999999999887655678999999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCc-CCC---CCCCCCccccccCCceeeccc--ccceeeeeEEeecc--cE
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPW---MPRDQTSRFKDLRGETIHHFV--SVSSFSEYTVLDIA--HV  167 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~-~~g---~~~~G~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~--~~  167 (280)
                      |+|+..+...|++|.+|+.+.++.|++..... +.+   ....|..++        .+++  ..|+|++|++++.+  .+
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~v~~~~~~~  151 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGY--------SHLTGGYAGGQAEYVRVPFADVGP  151 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCccccccccccccccccccccc--------ccccCCCCCeeEEEEEcccccCeE
Confidence            99999888899999999999999999865431 111   111110000        0000  13599999999987  89


Q ss_pred             EEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       168 ~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +++|+++++.+++++++...|+|+++ ....+.+|++|+|+|+|.+|.+++++|+..|...++++++++++.+++++++.
T Consensus       152 ~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~  230 (386)
T cd08283         152 FKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG  230 (386)
T ss_pred             EECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC
Confidence            99999999999999998999999987 78889999999999889999999999999998679999999999999999844


Q ss_pred             cEEEcCCCCCCc-cHHHHHHHhcCC-CceEEE
Q 023561          248 TEFVNSKNCGDK-SVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       248 ~~vi~~~~~~~~-~~~~~v~~~~~g-g~~~v~  277 (280)
                      ..++++.+   . ++.+.+++++++ ++|.+.
T Consensus       231 ~~vi~~~~---~~~~~~~l~~~~~~~~~D~vl  259 (386)
T cd08283         231 AETINFEE---VDDVVEALRELTGGRGPDVCI  259 (386)
T ss_pred             cEEEcCCc---chHHHHHHHHHcCCCCCCEEE
Confidence            46787765   4 488888888887 665443

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.1e-32  Score=251.71  Aligned_cols=236  Identities=28%  Similarity=0.384  Sum_probs=207.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCC-CCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.+++. +++++++.|+| .++||+||++++++|++|+..+.|.++...+|.++|||++|+|+++|+++..+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999998886 99999999996 79999999999999999999998876544558899999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc--cEEEcCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iP~~  173 (280)
                      |+|+..+...|++|.+|..+..+.|....+.  .|...+|                   +|++|+.++..  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-------------------~~~~~~~v~~~~~~~~~lp~~  138 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLIDG-------------------TQAEYVRIPHADNSLYKLPEG  138 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccCC-------------------eeeeEEEcccccCceEECCCC
Confidence            9999998899999999999999999876542  2222334                   89999999987  89999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      ++..+++.+.+.+.+||.++....++.++++|+|.|+|.+|.+++++|+.+|+.++++++++++|.++++++|++.++++
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~  218 (345)
T cd08286         139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNS  218 (345)
T ss_pred             CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecc
Confidence            99999999988999999877777889999999999889999999999999995488889999999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++   .++.+.+.+++++ +++.+.
T Consensus       219 ~~---~~~~~~i~~~~~~~~~d~vl  240 (345)
T cd08286         219 AK---GDAIEQVLELTDGRGVDVVI  240 (345)
T ss_pred             cc---ccHHHHHHHHhCCCCCCEEE
Confidence            76   6777888888877 665444

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=1.9e-32  Score=250.78  Aligned_cols=236  Identities=27%  Similarity=0.396  Sum_probs=205.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC------------CCCCCcccccceeEEEEE
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF------------PAVFPRILGHEAIGVVES   84 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~------------~~~~p~i~G~e~~G~V~~   84 (280)
                      |||+++..++.+++++++|.|++.++||+||+.++++|++|+..+.+.++            ...+|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            78999988888899999999999999999999999999999998877543            123467899999999999


Q ss_pred             eCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec
Q 023561           85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (280)
Q Consensus        85 vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  164 (280)
                      +|+++.++++||+|+..+...|++|.+|..+..++|.+..+.   |....|                   +|++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g-------------------~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRAL---GIFQDG-------------------GYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCce---eeeccC-------------------cceeeEEecH
Confidence            999999999999999999999999999999999999886542   222334                   8999999999


Q ss_pred             ccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       165 ~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ..++++|+++++.+++.+.+.+.|||+++......+++++|+|+|+|.+|++++++|+.+|++.|++++.+++|.+.+++
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  218 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA  218 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999987666666789999999889999999999999999888999999999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          245 FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       245 ~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +|++.+++.++   .++.+.+.+..+++++.+.
T Consensus       219 ~g~~~~~~~~~---~~~~~~~~~~~~~~~d~vi  248 (350)
T cd08240         219 AGADVVVNGSD---PDAAKRIIKAAGGGVDAVI  248 (350)
T ss_pred             hCCcEEecCCC---ccHHHHHHHHhCCCCcEEE
Confidence            99999988876   6777778877665654443

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.6e-32  Score=255.44  Aligned_cols=243  Identities=19%  Similarity=0.172  Sum_probs=202.6

Q ss_pred             Ccceeeeeeec--CCCC---CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC----------CCCCcccccc
Q 023561           13 KPIQCRAAIAT--APGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----------AVFPRILGHE   77 (280)
Q Consensus        13 ~~~~~~a~~~~--~~g~---~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~----------~~~p~i~G~e   77 (280)
                      .+.+|||+++.  ++|.   .+++++++.|.++++||+||+.++++|++|++.+.+....          ...+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            56789999885  3333   3789999999999999999999999999999887765210          1123588999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCC-CCCCccccccCCceeeccccccee
Q 023561           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSF  156 (280)
Q Consensus        78 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~  156 (280)
                      ++|+|+++|++++.+++||+|++.+...|++|..|+.+..++|+...+   +|.. .+|                   +|
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~g-------------------~~  146 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNYG-------------------SF  146 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCCC-------------------cc
Confidence            999999999999999999999999999999999999999999987654   3432 234                   89


Q ss_pred             eeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHH--cCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc
Q 023561          157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       157 ~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      ++|++++..+++++|+++++.+++.+.+++.|||+++...  .+++++++|+|+|+ |++|++++++|+.+|+ .+++++
T Consensus       147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~  225 (393)
T cd08246         147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVV  225 (393)
T ss_pred             eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEe
Confidence            9999999999999999999999999999999999987554  67899999999998 9999999999999999 677888


Q ss_pred             CChhHHHHHHHcCCcEEEcCCCCC-------------------CccHHHHHHHhcCC--CceEEEec
Q 023561          234 VISEKFEIGKRFGVTEFVNSKNCG-------------------DKSVSQVLLSIYDL--PLLTISVS  279 (280)
Q Consensus       234 ~~~~~~~~~~~~Ga~~vi~~~~~~-------------------~~~~~~~v~~~~~g--g~~~v~~~  279 (280)
                      ++++|+++++++|+++++++++.+                   ...+.+.+.+++++  ++ ++++|
T Consensus       226 ~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~-d~vid  291 (393)
T cd08246         226 SSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDP-DIVFE  291 (393)
T ss_pred             CCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCC-eEEEE
Confidence            899999999999999999875410                   01366778888877  45 44444

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.8e-32  Score=249.15  Aligned_cols=235  Identities=31%  Similarity=0.450  Sum_probs=206.7

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.+++.++++++.+.|.+.++||+||+.++++|++|+..+.|..+...+|.++|+|++|+|+.+|+++..|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            69999998888899999999999999999999999999999999988766556688999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc--cEEEcCCCC
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV  174 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iP~~l  174 (280)
                      +|+..+...|++|.+|..|..++|++...   .|...+|                   +|++|++++..  +++++|+++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~iP~~~  138 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG-------------------SFAEYVAVPRADVNLVRLPDDV  138 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC-------------------cceeEEEcccccCceEECCCCC
Confidence            99887888999999999999999999643   3333345                   89999999975  899999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++.+++.+.+++.|||+++.+..++.++++|+|+|+|++|++++++|+..|+ .|+++.+++++.+.++++|++++++++
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~  217 (345)
T cd08260         139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS  217 (345)
T ss_pred             CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEccc
Confidence            9999999998999999987778889999999999999999999999999999 789998899999999999999999876


Q ss_pred             CCCCccHHHHHHHhcCCCceEE
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTI  276 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v  276 (280)
                      +  +.++.+.+.+++++++|.+
T Consensus       218 ~--~~~~~~~~~~~~~~~~d~v  237 (345)
T cd08260         218 E--VEDVAAAVRDLTGGGAHVS  237 (345)
T ss_pred             c--chhHHHHHHHHhCCCCCEE
Confidence            3  2456677777766555433

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=3.2e-32  Score=247.79  Aligned_cols=234  Identities=25%  Similarity=0.383  Sum_probs=202.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||++++++++...++++|.|.|.++||+||+.++++|++|+..+.+..+. ..|.++|||++|+|+.+|++++.|++||
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            789999998874449999999999999999999999999999988886543 3477899999999999999999999999


Q ss_pred             EEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           97 VVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        97 ~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      +|++.+. .+|+.|.+|..+..++|.....   .|+.++|                   +|++|+.++..+++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGLD  137 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCCC
Confidence            9987554 6799999999999999987653   4444555                   999999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      +.+++.+.+...|+|+++ ....+++|++|||+|+|++|++++++|+. .|+ +|+++++++++++.++++|++.+++++
T Consensus       138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~  215 (338)
T PRK09422        138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSK  215 (338)
T ss_pred             HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEeccc
Confidence            999999999999999976 77889999999999999999999999998 599 899999999999999999999999875


Q ss_pred             CCCCccHHHHHHHhcCCCceEEEe
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      .  ..++.+.+++.++ +++.+++
T Consensus       216 ~--~~~~~~~v~~~~~-~~d~vi~  236 (338)
T PRK09422        216 R--VEDVAKIIQEKTG-GAHAAVV  236 (338)
T ss_pred             c--cccHHHHHHHhcC-CCcEEEE
Confidence            3  1456677777766 5554443

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=1.6e-32  Score=257.15  Aligned_cols=227  Identities=20%  Similarity=0.252  Sum_probs=183.1

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhh-hcCCC----C--CCCCcccccceeEEEEEeCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDF----P--AVFPRILGHEAIGVVESVGE   87 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~-~g~~~----~--~~~p~i~G~e~~G~V~~vG~   87 (280)
                      |+|||+++.+++. ++++++|.|+|+++||+|||.++|||++|++.+ .|...    .  ..+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            4689999999886 999999999999999999999999999999976 45321    1  13688999999999999999


Q ss_pred             CCC-CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc-
Q 023561           88 NVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-  165 (280)
Q Consensus        88 ~v~-~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  165 (280)
                      +++ .|++||||++.+...|+.|..|. +             +|...+|                   +|+||++++.. 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~-~-------------~g~~~~G-------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCP-G-------------YSYTYPG-------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCC-C-------------ccccCCC-------------------cceEEEEecHHh
Confidence            998 59999999998888898887762 1             2333345                   99999999986 


Q ss_pred             ---cEEEcCCCCChhhhcccchhhH---HHHHHH--------HHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcC--CCe
Q 023561          166 ---HVVKVDPTVPPNRACLLSCGVS---TGVGAA--------WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG--ATR  228 (280)
Q Consensus       166 ---~~~~iP~~ls~~~aa~l~~~~~---ta~~~l--------~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g--~~~  228 (280)
                         .++++|+++++++++++. +++   +++.++        .+..++++|++|+|+|+ |++|++++|+|+.+|  +.+
T Consensus       127 ~~~~~~~lP~~l~~~~aal~e-pl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~  205 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVE-PLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSL  205 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcc-hHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCce
Confidence               689999999999988652 222   233322        24567899999999986 999999999999975  457


Q ss_pred             EEEEcCChhHHHHHHHc--------CCc-EEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          229 IIGVDVISEKFEIGKRF--------GVT-EFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       229 vi~~~~~~~~~~~~~~~--------Ga~-~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      |++++.+++|+++++++        |++ .++++++  ++++.+.+++++++ |+|.++.
T Consensus       206 Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~--~~~~~~~v~~~t~g~g~D~vid  263 (410)
T cd08238         206 LVVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT--IDDLHATLMELTGGQGFDDVFV  263 (410)
T ss_pred             EEEEcCCHHHHHHHHHhccccccccCceEEEECCCc--cccHHHHHHHHhCCCCCCEEEE
Confidence            99999999999999997        776 5677653  24688889999888 7766553

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.2e-32  Score=248.84  Aligned_cols=254  Identities=30%  Similarity=0.427  Sum_probs=210.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC---CC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG---VV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~---~~   93 (280)
                      |||+++.+++.+++++++|.|.++++||+||+.++++|++|+.++.+.++. .+|.++|||++|+|+.+|+++.+   |+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~   79 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS   79 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence            689999988777999999999999999999999999999999988887653 56889999999999999999988   99


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecc--cccceeeeeEEeecccEEEc
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHF--VSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~i  170 (280)
                      +||+|+..+..+|++|.+|..+++++|+...+.+..+. .+.|-..+.   ..-.+++  +..|+|++|+.++.+.++++
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (367)
T cd08263          80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLF---RLDGGPVYMYSMGGLAEYAVVPATALAPL  156 (367)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCccccc---ccCCCccccccCCcceeEEEechhhEEEC
Confidence            99999998888999999999999999998653211110 111100000   0000001  12358999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      |+++++.+++.+.+++.|||.++.....+.++++|+|+|+|.+|.+++++|+..|++.+++++.++++.+.++++|++.+
T Consensus       157 P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v  236 (367)
T cd08263         157 PESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHT  236 (367)
T ss_pred             CCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceE
Confidence            99999999999999999999988777788999999999889999999999999999658999889999999999999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++++   .++.+.+++++++ +++.+.
T Consensus       237 ~~~~~---~~~~~~l~~~~~~~~~d~vl  261 (367)
T cd08263         237 VNAAK---EDAVAAIREITGGRGVDVVV  261 (367)
T ss_pred             ecCCc---ccHHHHHHHHhCCCCCCEEE
Confidence            99887   7788888888876 665554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=5e-32  Score=247.19  Aligned_cols=233  Identities=26%  Similarity=0.395  Sum_probs=198.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC---CCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~---~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      ||++++.+++++++++++|.|.|.++||+||++++++|++|+.++.+..   .....|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            5899999888889999999999999999999999999999998766532   1124577899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|++.+..+|..|..|..+.+++|++..+   .+...+|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence            99999999999999999999999999988542   3333445                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++.+++.+ ..+.+++.++..  ...+|++|+|.|+|.+|.+++++|+.+|++.|++++.++++.++++++|+++++++
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~  215 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV  215 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence            999888755 466666665432  34689999998889999999999999999668888888999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++   .++.+.+++++++ +++.+.
T Consensus       216 ~~---~~~~~~~~~~~~~~~~d~v~  237 (341)
T PRK05396        216 AK---EDLRDVMAELGMTEGFDVGL  237 (341)
T ss_pred             cc---ccHHHHHHHhcCCCCCCEEE
Confidence            87   7788889888877 775554

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=9.2e-32  Score=249.84  Aligned_cols=237  Identities=24%  Similarity=0.378  Sum_probs=198.0

Q ss_pred             eeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC------C-CCCCCcccccceeEEEEEeCCC
Q 023561           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD------F-PAVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        16 ~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~------~-~~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      ++.+.++..+  .++++++|.|+++++||+||+.++++|++|+..+.+..      + ...+|.++|||++|+|+++|++
T Consensus        28 ~~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~  105 (384)
T cd08265          28 NLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKN  105 (384)
T ss_pred             cceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCC
Confidence            4444555532  49999999999999999999999999999998876321      1 1345789999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEE
Q 023561           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (280)
Q Consensus        89 v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  168 (280)
                      +..|++||+|++.+..+|+.|..|+.+++++|.....   .|...+|                   +|++|+.++...++
T Consensus       106 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~~~  163 (384)
T cd08265         106 VKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARYAW  163 (384)
T ss_pred             CCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHHeE
Confidence            9999999999999999999999999999999997553   3433345                   89999999999999


Q ss_pred             EcCCCC-------ChhhhcccchhhHHHHHHHHHH-cCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          169 KVDPTV-------PPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       169 ~iP~~l-------s~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ++|+++       ++. ++++..++.++|+++... .++++|++|+|+|+|++|++++++|+.+|+..|++++++++|.+
T Consensus       164 ~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~  242 (384)
T cd08265         164 EINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRN  242 (384)
T ss_pred             ECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            999863       445 555556889999987665 68999999999988999999999999999977999998999999


Q ss_pred             HHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          241 IGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       241 ~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++++|+++++++++....++.+.+++++++ ++|.+.
T Consensus       243 ~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvl  280 (384)
T cd08265         243 LAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQV  280 (384)
T ss_pred             HHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEE
Confidence            9999999999988752224788889999988 775444

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=1.8e-31  Score=247.03  Aligned_cols=242  Identities=25%  Similarity=0.347  Sum_probs=200.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCC-CCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      ||++++.+++. ++++++|+|.+ +++||+||++++++|++|++...|..+ ..+|.++|||++|+|+++|+++..+++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG   78 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence            57888888764 99999999996 799999999999999999999988765 3468899999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc--cEEEcCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iP~~  173 (280)
                      |+|+..+..+|+.|..|..++.+.|.+..+.  ++....|....          ....|+|++|++++..  .++++|++
T Consensus        79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~g~~a~y~~v~~~~~~~~~lP~~  146 (375)
T cd08282          79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPG--RAGGAYGYVDM----------GPYGGGQAEYLRVPYADFNLLKLPDR  146 (375)
T ss_pred             CEEEEeCCCCCCCCHHHHCcCcccCCCCCcc--ccccccccccc----------CCCCCeeeeEEEeecccCcEEECCCC
Confidence            9999999999999999999999999874321  00000110000          0012489999999976  89999999


Q ss_pred             CChh---hhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          174 VPPN---RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       174 ls~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      +++.   +++.+.+++.|+|+++ ....+.+|++|+|.|+|++|++++++|+++|+..|++++++++|+++++++|++ .
T Consensus       147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~-~  224 (375)
T cd08282         147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI-P  224 (375)
T ss_pred             CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe-E
Confidence            9998   5677788899999976 788899999999988899999999999999986788899999999999999994 5


Q ss_pred             EcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++   +++.+.+.++++++++.++
T Consensus       225 v~~~~---~~~~~~i~~~~~~~~d~v~  248 (375)
T cd08282         225 IDFSD---GDPVEQILGLEPGGVDRAV  248 (375)
T ss_pred             eccCc---ccHHHHHHHhhCCCCCEEE
Confidence            67765   7788888888765554443

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.5e-31  Score=243.59  Aligned_cols=231  Identities=32%  Similarity=0.521  Sum_probs=202.5

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++++++. +++++++.|++.++|++|||.++++|+.|+....+..+...+|.++|+|++|+|+.+|++++.|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            68999988875 99999999999999999999999999999999888765555688899999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      +|+..+..+|+.|..|+.+..++|.+...   .+....|                   +|++|+.++.+ ++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~-~~~~p~~~~~  136 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRDG-------------------GFAEYIVVPAD-ALLVPEGLSL  136 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCCC-------------------cceeEEEechh-eEECCCCCCH
Confidence            99998889999999999999999965543   2222233                   89999999999 9999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~  256 (280)
                      ++++++ ..+.+++.++ ...++.+|++|||+|+|.+|.+++++|+.+|+ +|+++.+++++.++++++|+++++++++ 
T Consensus       137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~-  212 (337)
T cd08261         137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD-  212 (337)
T ss_pred             HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc-
Confidence            999877 4777888865 77889999999999889999999999999999 7888888899999999999999999887 


Q ss_pred             CCccHHHHHHHhcCC-CceEEE
Q 023561          257 GDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       257 ~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                        .++.+.+.+++++ +++.+.
T Consensus       213 --~~~~~~l~~~~~~~~vd~vl  232 (337)
T cd08261         213 --EDVAARLRELTDGEGADVVI  232 (337)
T ss_pred             --cCHHHHHHHHhCCCCCCEEE
Confidence              6788889888877 665554

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=1.9e-31  Score=243.27  Aligned_cols=235  Identities=25%  Similarity=0.372  Sum_probs=200.3

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCC-CCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~-~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.+++. ++++++++|.|. ++||+||+.++++|+.|.....+.++ ...|.++|||++|+|+++|++++.+++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (344)
T cd08284           1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG   78 (344)
T ss_pred             CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence            57899987754 999999999985 99999999999999999988887654 2457889999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecccccceeeeeEEeecc--cEEEcCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDP  172 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iP~  172 (280)
                      |+|+..+..+|++|.+|..+.+++|++.......+. ..+                   |+|++|+.++.+  .++++|+
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~v~~~~~~~~~~p~  139 (344)
T cd08284          79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLD-------------------GAQAEYVRVPFADGTLLKLPD  139 (344)
T ss_pred             CEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCC-------------------CceeEEEEcccccCceEECCC
Confidence            999998889999999999999999988643200010 112                   389999999865  9999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      ++++.+++.+++++.|||+++. ..++.++++|+|+|+|.+|.+++++|+.+|+.++++++++++|.++++++|+. +++
T Consensus       140 ~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~  217 (344)
T cd08284         140 GLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PIN  217 (344)
T ss_pred             CCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEe
Confidence            9999999999999999999764 57889999999998899999999999999976788888889999999999986 466


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      .+.   .++.+.+.+++++ ++|.+.
T Consensus       218 ~~~---~~~~~~l~~~~~~~~~dvvi  240 (344)
T cd08284         218 FED---AEPVERVREATEGRGADVVL  240 (344)
T ss_pred             cCC---cCHHHHHHHHhCCCCCCEEE
Confidence            665   6788888888887 775544

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2.2e-31  Score=243.01  Aligned_cols=233  Identities=29%  Similarity=0.393  Sum_probs=199.7

Q ss_pred             eeeeeecCCCCCcEEEEeecCCC-CCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.+++. +++++.|.|.| +++||+||+.++++|++|+..+.|..+. ..|.++|||++|+|+++|+++..+++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG   78 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence            68999988776 99999999996 8999999999999999999888876543 457899999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc--cEEEcCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iP~~  173 (280)
                      |+|++....+|+.|.+|+.+..++|....+   .|...+|                   +|++|+.++..  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~~  136 (345)
T cd08287          79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPGS  136 (345)
T ss_pred             CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCCC
Confidence            999886677899999999999999997654   4445556                   89999999974  99999999


Q ss_pred             CChhhhc-----ccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          174 VPPNRAC-----LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       174 ls~~~aa-----~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +++..+.     .+.+.+.++|+++ ...++++|++|+|.|+|.+|++++++|+.+|++.++++++++++.++++++|++
T Consensus       137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~  215 (345)
T cd08287         137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT  215 (345)
T ss_pred             CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            9982221     2235678888865 577899999999988899999999999999997799999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      .++++++   .++.+.+.+.+++ +++.+.
T Consensus       216 ~v~~~~~---~~~~~~i~~~~~~~~~d~il  242 (345)
T cd08287         216 DIVAERG---EEAVARVRELTGGVGADAVL  242 (345)
T ss_pred             eEecCCc---ccHHHHHHHhcCCCCCCEEE
Confidence            9999987   7788888888877 775554

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=2.7e-31  Score=242.12  Aligned_cols=233  Identities=27%  Similarity=0.408  Sum_probs=204.6

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++++++. +.+++.+.|.+.+++|+||++++++|+.|+.++.+..+....|.++|+|++|+|+.+|++++.|++||
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            58999998875 99999999999999999999999999999999887654334577899999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeeccc-----EEEcC
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-----VVKVD  171 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~iP  171 (280)
                      +|+..+...|++|+.|..++.++|+...+   .|...+|                   +|++|++++..+     ++++|
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~~~~~~lP  137 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYDG-------------------GFAEYVRVPAWAVKRGGVLKLP  137 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCcce---eccCCCC-------------------cceeeEEecccccccccEEECC
Confidence            99999999999999999999999988654   3433445                   899999999998     99999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      +++++.+++.+ +++.+||+++ ...++++|++|+|+|+|.+|.+++++|+..|.+.++++.+++++.+.++++|+++++
T Consensus       138 ~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~  215 (343)
T cd08235         138 DNVSFEEAALV-EPLACCINAQ-RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTI  215 (343)
T ss_pred             CCCCHHHHHhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEe
Confidence            99999999876 6889999976 455899999999998899999999999999995488888899999999999999999


Q ss_pred             cCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          252 NSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++   .++.+.+++++++ ++|.++
T Consensus       216 ~~~~---~~~~~~i~~~~~~~~vd~vl  239 (343)
T cd08235         216 DAAE---EDLVEKVRELTDGRGADVVI  239 (343)
T ss_pred             cCCc---cCHHHHHHHHhCCcCCCEEE
Confidence            9887   7888888888887 665554

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=2.1e-31  Score=248.49  Aligned_cols=241  Identities=21%  Similarity=0.195  Sum_probs=200.4

Q ss_pred             cceeeeeeecC--CCCC---cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC----------CCCCC-cccccc
Q 023561           14 PIQCRAAIATA--PGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFP-RILGHE   77 (280)
Q Consensus        14 ~~~~~a~~~~~--~g~~---l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~----------~~~~p-~i~G~e   77 (280)
                      +.+|||+++..  +++|   +++++++.|.|.++|++||+.++++|++|.+...+...          ....| .++|||
T Consensus         5 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e   84 (398)
T TIGR01751         5 PETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSD   84 (398)
T ss_pred             chhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccc
Confidence            46799999954  5543   99999999999999999999999999999877655321          00123 379999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCC-CCCCccccccCCceeeccccccee
Q 023561           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSF  156 (280)
Q Consensus        78 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~  156 (280)
                      ++|+|+++|+++..|++||+|++.+...|++|.+|+.|+...|+....   +|.. .+|                   +|
T Consensus        85 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~g-------------------~~  142 (398)
T TIGR01751        85 ASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNFG-------------------SF  142 (398)
T ss_pred             eEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCCc-------------------cc
Confidence            999999999999999999999999999999999999999999987542   2221 233                   89


Q ss_pred             eeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHH--HcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc
Q 023561          157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       157 ~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      ++|++++..+++++|+++++++++.+.+...|+|+++..  ..++.+|++|+|+|+ |.+|++++++|+++|+ ++++++
T Consensus       143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~  221 (398)
T TIGR01751       143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV  221 (398)
T ss_pred             eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence            999999999999999999999999999999999997654  467899999999998 9999999999999999 677777


Q ss_pred             CChhHHHHHHHcCCcEEEcCCCCC-------------------CccHHHHHHHhcCC-CceEEE
Q 023561          234 VISEKFEIGKRFGVTEFVNSKNCG-------------------DKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       234 ~~~~~~~~~~~~Ga~~vi~~~~~~-------------------~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++++.+.++++|++.++|+++..                   ...+.+.+.+++++ +++.++
T Consensus       222 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vl  285 (398)
T TIGR01751       222 SSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVF  285 (398)
T ss_pred             CCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEE
Confidence            888999999999999999875410                   01355677888887 665544

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-31  Score=243.49  Aligned_cols=213  Identities=29%  Similarity=0.408  Sum_probs=191.3

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.+++++++++++|.|.+.++|++||+.++++|++|+..+.+..+...+|.++|||++|+|+.+|+++..+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            68999999998899999999999999999999999999999998888765555678999999999999999998899999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      +|++.+..+|++|.+|..+.+++|+....   +|...+|                   +|++|+.++.+.++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~  138 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNVSD  138 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCCCH
Confidence            99998889999999999999999999654   4544455                   8999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      .+++.+.+.+.++|+++.+. .+.++++|+|+|+ |.+|++++++|+.+|+ +++++++++++.+.++++ ++++++++
T Consensus       139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~  214 (334)
T PRK13771        139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS  214 (334)
T ss_pred             HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch
Confidence            99999999999999976554 8899999999998 9999999999999999 788888889999988888 76666543

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=5.2e-31  Score=242.84  Aligned_cols=238  Identities=29%  Similarity=0.396  Sum_probs=194.2

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC---CCCCCcccccceeEEEEEeCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      -.+++++++..++. +++++++.|.|.++||+||+.++++|++|+..+.+...   ....|.++|||++|+|+++|+++.
T Consensus        15 ~~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   93 (364)
T PLN02702         15 EEENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK   93 (364)
T ss_pred             ccccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCC
Confidence            34566777776655 99999999999999999999999999999998876321   113577899999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      +|++||+|++.+..+|+.|..|..|..++|++..+   ++. ..+|                   +|++|+.++.+.+++
T Consensus        94 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~g-------------------~~~~y~~v~~~~~~~  151 (364)
T PLN02702         94 HLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVHG-------------------SLANQVVHPADLCFK  151 (364)
T ss_pred             CCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCCC-------------------cccceEEcchHHeEE
Confidence            99999999999999999999999999999987543   221 1234                   899999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|+++++.++++. .++.++|.++ +..++.++++|+|+|+|++|++++++|+.+|++.+++++++++|.++++++|+++
T Consensus       152 ~P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~  229 (364)
T PLN02702        152 LPENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADE  229 (364)
T ss_pred             CCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            9999999988753 2555677765 7788999999999988999999999999999977899999999999999999998


Q ss_pred             EEcCCCCCCccHHHHHHHh--cCC-CceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSI--YDL-PLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~--~~g-g~~~v~  277 (280)
                      +++++. ...++.+.+.++  +.+ +++.+.
T Consensus       230 ~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi  259 (364)
T PLN02702        230 IVLVST-NIEDVESEVEEIQKAMGGGIDVSF  259 (364)
T ss_pred             EEecCc-ccccHHHHHHHHhhhcCCCCCEEE
Confidence            876542 124566666654  223 554443

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=5.6e-31  Score=238.91  Aligned_cols=234  Identities=32%  Similarity=0.437  Sum_probs=205.4

Q ss_pred             eeeeeecCCCCC-cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC-CCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           17 CRAAIATAPGEP-LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        17 ~~a~~~~~~g~~-l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      ||++++..++++ +.+++.+.|.+.++||+||+.++++|+.|.....+.++ ...+|.++|+|++|+|+.+|+++..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            689999999987 68888899999999999999999999999999888765 2345789999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|+..+..+|+.|.+|..++.+.|.....   .|...+|                   +|++|+.++...++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG-------------------GFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC-------------------cceeeEEechHHeEECCCCC
Confidence            9999999999999999999999999977643   3444445                   89999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++.+++.+..++.|||.++....+++++++|||.|+|.+|.+++++|+..|+ +|++++.++++.+.++++|++++++.+
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~  217 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSL  217 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCC
Confidence            9999999999999999988777889999999998889999999999999999 799999999999999999999998877


Q ss_pred             CCCCccHHHHHHHhcCC-CceEEE
Q 023561          255 NCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +   ..+.+.+ +.+++ ++|.+.
T Consensus       218 ~---~~~~~~~-~~~~~~~~D~vi  237 (338)
T cd08254         218 D---DSPKDKK-AAGLGGGFDVIF  237 (338)
T ss_pred             C---cCHHHHH-HHhcCCCceEEE
Confidence            6   5666666 55666 665443

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=5.5e-31  Score=240.64  Aligned_cols=232  Identities=31%  Similarity=0.462  Sum_probs=196.7

Q ss_pred             eeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcC-CC--CCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DF--PAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        19 a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~-~~--~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |++++++.. +++++++.|.|.++||+||+.++++|+.|...+.+. ..  ....|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            467788854 999999999999999999999999999998876432 11  11357789999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|++.+..+|++|.+|..|..++|++..+.  .....+|                   +|++|++++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVDG-------------------TLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCCC-------------------ceeeeEEecHHHcEECcCCCC
Confidence            9999999999999999999999999975431  0111234                   899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +.+++.+ .++.++++++ ...++++|++|+|.|+|++|.+++++|+.+|++.|+++.+++++.++++++|++.++++++
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  216 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT  216 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc
Confidence            9999877 4788999875 8889999999999988999999999999999955899988999999999999999998876


Q ss_pred             CCCcc---HHHHHHHhcCC-CceEEE
Q 023561          256 CGDKS---VSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       256 ~~~~~---~~~~v~~~~~g-g~~~v~  277 (280)
                         .+   +.+.+.+.+++ ++|.++
T Consensus       217 ---~~~~~~~~~~~~~~~~~~~d~vl  239 (343)
T cd05285         217 ---EDTPESAEKIAELLGGKGPDVVI  239 (343)
T ss_pred             ---ccchhHHHHHHHHhCCCCCCEEE
Confidence               44   37788888877 665554

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-30  Score=236.45  Aligned_cols=223  Identities=35%  Similarity=0.526  Sum_probs=196.1

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++..+++++.++++|.|.+.++||+|+++++++|++|+..+.|..+....|.++|||++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            58999987666699999999999999999999999999999999988766556688999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      +|+..+...|++|.+|+.+..++|++..   .+|....|                   +|++|++++...++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~  138 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVDG-------------------GFAEYVKVPERSLVKLPDNVSD  138 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCcc---ccccccCC-------------------eeeeEEEechhheEECCCCCCH
Confidence            9999998999999999999999999852   24544455                   8999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      ++++.+.+++.+||.++.. ..+.++++++|+|+ |++|++++++++..|. .++++.+++++.+.++++|++.+++.+ 
T Consensus       139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-  215 (332)
T cd08259         139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS-  215 (332)
T ss_pred             HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH-
Confidence            9999999999999997765 88999999999998 9999999999999999 788888888999999889988877543 


Q ss_pred             CCCccHHHHHHHh
Q 023561          256 CGDKSVSQVLLSI  268 (280)
Q Consensus       256 ~~~~~~~~~v~~~  268 (280)
                         . +.+.+.+.
T Consensus       216 ---~-~~~~~~~~  224 (332)
T cd08259         216 ---K-FSEDVKKL  224 (332)
T ss_pred             ---H-HHHHHHhc
Confidence               2 44555544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.1e-30  Score=238.00  Aligned_cols=235  Identities=29%  Similarity=0.412  Sum_probs=205.9

Q ss_pred             eeeeeecCCC-CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        17 ~~a~~~~~~g-~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      |||+++.+++ ..+++++++.|.|.++|++||+.++++|++|..++.+..+. ...|.++|||++|+|+++|+++..+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            6899998877 34999999999999999999999999999999988876543 234678899999999999999999999


Q ss_pred             CCEEEecC-CCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           95 GDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        95 Gd~V~~~~-~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      ||+|+..+ ...|++|.+|+.++..+|++...   .|+...|                   +|++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCCC
Confidence            99998765 57899999999999999998754   3444445                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+.....|||.++.. .+++++++|||+|+ +.+|.+++++|+.+|+ +|+++.+++++.+.++++|++++++
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~  216 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVD  216 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEc
Confidence            9999999989899999997654 58999999999998 7799999999999999 8999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +++   .++.+.+.+++++ +++.+..
T Consensus       217 ~~~---~~~~~~~~~~~~~~~vd~vl~  240 (341)
T cd08297         217 FKK---SDDVEAVKELTGGGGAHAVVV  240 (341)
T ss_pred             CCC---ccHHHHHHHHhcCCCCCEEEE
Confidence            887   6788889988877 7766553

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.2e-30  Score=236.26  Aligned_cols=226  Identities=27%  Similarity=0.355  Sum_probs=190.5

Q ss_pred             eeeeeecCCC-CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g-~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++..++ +.+++++.+.|+++++||+||+.++++|++|+..+.+.. ...+|.++|||++|+|+.+|+++..|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-VKPMPHIPGAEFAGVVEEVGDHVKGVKKG   79 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-CCCCCeecccceeEEEEEECCCCCCCCCC
Confidence            6888887766 458888988888999999999999999999998876432 22357789999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|++.+...|+.|.+|..|..++|++..+   +|....|                   +|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (325)
T cd08264          80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDSIS  137 (325)
T ss_pred             CEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCCCC
Confidence            999999999999999999999999997543   3443444                   899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      +.+++.+.+.+.++|+++. ..++++|++|+|+|+ |++|++++++|+.+|+ .++++.    +.+.++++|++++++++
T Consensus       138 ~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~----~~~~~~~~g~~~~~~~~  211 (325)
T cd08264         138 DELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVS----RKDWLKEFGADEVVDYD  211 (325)
T ss_pred             HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEe----HHHHHHHhCCCeeecch
Confidence            9999999999999999764 488999999999998 9999999999999999 677775    34677789999998765


Q ss_pred             CCCCccHHHHHHHhcCCCceEEE
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +     ..+.+++++ +++|.+.
T Consensus       212 ~-----~~~~l~~~~-~~~d~vl  228 (325)
T cd08264         212 E-----VEEKVKEIT-KMADVVI  228 (325)
T ss_pred             H-----HHHHHHHHh-CCCCEEE
Confidence            4     245566666 5554443

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.98  E-value=1.5e-30  Score=237.42  Aligned_cols=221  Identities=23%  Similarity=0.345  Sum_probs=190.9

Q ss_pred             eeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCE
Q 023561           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (280)
Q Consensus        18 ~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~   97 (280)
                      |++++++.+..|++++++.|+|.++||+||+.++++|++|+....+......+|.++|||++|+|+++|+++.+|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            57888888877999999999999999999999999999999998887654556889999999999999999999999999


Q ss_pred             EE-ecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           98 VI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        98 V~-~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      |+ ......|++|.+|+.+..++|++..... .|....|              ....|+|++|+.++...++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~~  145 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLDS  145 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhcc-cccccCC--------------CcCCCcceeEEEechhheEECCCCCCH
Confidence            97 4455689999999999999999865431 1111111              112348999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      .+++.+.+...+||.++ +...+++|++++|.|.|.+|++++++++.+|+ .++++++++++++.++++|++.+++.+.
T Consensus       146 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~  222 (337)
T cd05283         146 AAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD  222 (337)
T ss_pred             HHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc
Confidence            99999999999999965 45568999999998889999999999999999 8999999999999999999999988765

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.98  E-value=6.4e-31  Score=238.41  Aligned_cols=207  Identities=19%  Similarity=0.219  Sum_probs=177.0

Q ss_pred             eeeeeecCCCC-----CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCC
Q 023561           17 CRAAIATAPGE-----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        17 ~~a~~~~~~g~-----~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      |||+++.+++.     .++++++|.|.|+++||+||+.++++|++|+..+.|.++. ..+|.++|||++|+|+++|+++.
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            68999998885     3788899999999999999999999999999999887643 35689999999999999999998


Q ss_pred             C-CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           91 G-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        91 ~-~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      + |++||+|+..+.                             .+|                   +|++|++++.+.+++
T Consensus        81 ~~~~vGd~V~~~~~-----------------------------~~g-------------------~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG-----------------------------SYG-------------------TYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC-----------------------------CCC-------------------cchheeeecHHHeEE
Confidence            6 999999974310                             023                   899999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE-Cc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|+++++.+++.+.+...|+|. +.+.... ++++++|+ |+ |++|++++|+|+.+|+ +|++++++++|+++++++|+
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~  189 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA  189 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence            9999999999988878889975 4555555 56666665 55 9999999999999999 79999999999999999999


Q ss_pred             cEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          248 TEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       248 ~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++++++   +++.+.+++++++ +++.+.
T Consensus       190 ~~~i~~~~---~~~~~~v~~~~~~~~~d~vi  217 (324)
T cd08291         190 EYVLNSSD---PDFLEDLKELIAKLNATIFF  217 (324)
T ss_pred             cEEEECCC---ccHHHHHHHHhCCCCCcEEE
Confidence            99999887   7899999999887 775544

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.98  E-value=3.2e-30  Score=233.87  Aligned_cols=214  Identities=29%  Similarity=0.443  Sum_probs=190.3

Q ss_pred             eeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCE
Q 023561           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (280)
Q Consensus        18 ~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~   97 (280)
                      ||+++.++|..+++++++.|.+.++|++||+.++++|++|...+.+......+|.++|||++|+|+.+|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            68899988767999999999999999999999999999999998887654456889999999999999999999999999


Q ss_pred             EEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           98 VIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        98 V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      |++.+. .+|++|.+|+.++.++|++..+   ++....|                   +|++|+.++.++++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~~  138 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGLPL  138 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCCCH
Confidence            987655 6799999999999999999754   3332334                   8999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      .+++.+.+...+||.++. ...+.++++|+|+|+|.+|.+++++|+.+|+ +|+++.+++++.+.++++|++.+++...
T Consensus       139 ~~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~  215 (330)
T cd08245         139 AQAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA  215 (330)
T ss_pred             HHhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC
Confidence            999999989999999764 4789999999999888899999999999999 7999999999999999999988887654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=5.2e-30  Score=231.85  Aligned_cols=235  Identities=22%  Similarity=0.318  Sum_probs=202.9

Q ss_pred             eeeeeecCCCC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++...+.  .+++++.+.|.+.+++|+||+.++++|++|+.++.|..+. ...|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            57888874443  2788888888889999999999999999999998876542 24578899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|++.+...|+.|.+|..+.+++|+...+   .|....|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCCC
Confidence            99999999999999999999999999987543   4444445                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+++++.++|.++.+..++.++++++|+|+ +.+|++++++++..|+ +++.+++++++.+.++++|.+.+++
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~  217 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVID  217 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEe
Confidence            9999999998899999998888889999999999998 7999999999999999 7888888999999998899888887


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ..+   .++.+.+.+.+.+ +++.++
T Consensus       218 ~~~---~~~~~~~~~~~~~~~~d~~i  240 (342)
T cd08266         218 YRK---EDFVREVRELTGKRGVDVVV  240 (342)
T ss_pred             cCC---hHHHHHHHHHhCCCCCcEEE
Confidence            665   6677777777766 665544

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd05281 TDH Threonine dehydrogenase

Probab=99.97  E-value=3e-30  Score=235.56  Aligned_cols=232  Identities=28%  Similarity=0.424  Sum_probs=195.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC---CCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~---~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++++++..+++++.+.|.|.++|++||+.++++|+.|+.++.+..   .....|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999888779999999999999999999999999999988765421   1123567899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+..+.++|+.|.+|+.+++++|+...   ..|....|                   +|++|++++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK---ILGVDTDG-------------------CFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccc---eEeccCCC-------------------cceEEEEechHHcEECcCC
Confidence            9999999999999999999999999997642   23333344                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      ++.+++ ++..++.++++++.  ...++|++|+|.|+|.+|.+++++|+.+|...|++++++++|.++++++|+++++++
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~  215 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINP  215 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCc
Confidence            998555 55557788887654  455789999998889999999999999998668888888999999999999999987


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +.   .++. .+.+++++ +++.+.
T Consensus       216 ~~---~~~~-~~~~~~~~~~vd~vl  236 (341)
T cd05281         216 RE---EDVV-EVKSVTDGTGVDVVL  236 (341)
T ss_pred             cc---ccHH-HHHHHcCCCCCCEEE
Confidence            76   6777 78888877 664444

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=3e-30  Score=233.13  Aligned_cols=207  Identities=25%  Similarity=0.428  Sum_probs=181.6

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.+++. +++++++.|+++++||+||+.++++|++|...+.|..+   .|.++|||++|+|+++|++   +++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~   73 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK   73 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence            58999988764 99999999999999999999999999999999888654   4788999999999999998   68999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      +|...+..+|+.|.+|..|....|+....   .+. ..+|                   +|++|++++.++++++|++++
T Consensus        74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~  131 (319)
T cd08242          74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDLVP  131 (319)
T ss_pred             eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCCCC
Confidence            99999999999999999999998888653   333 1344                   899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      ..+++.+ .++.++|. +.+..+++++++|+|+|+|.+|.+++++|+.+|+ ++++++.++++++.++++|++.+++++.
T Consensus       132 ~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~  208 (319)
T cd08242         132 DEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA  208 (319)
T ss_pred             HHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc
Confidence            9888864 35566665 5678889999999999889999999999999999 6899998999999999999988887654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.97  E-value=4.4e-30  Score=234.32  Aligned_cols=231  Identities=28%  Similarity=0.474  Sum_probs=200.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++++++. +.+++.+.|++.++||+||+.++++|+.|+....+.+. ...|.++|+|++|+|+.+|+++..|++||
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd   78 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD   78 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence            68999998876 99999999999999999999999999999998877652 24578899999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      +|+..+...|+.|.+|..+++..|+....   +|...+|                   +|++|+.++.+.++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lP~~~~~  136 (343)
T cd08236          79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRDG-------------------AFAEYVSVPARNLIKIPDHVDY  136 (343)
T ss_pred             EEEEcCCCCCCCChhHHCcChhhCCCcce---EecccCC-------------------cccceEEechHHeEECcCCCCH
Confidence            99999888999999999999999988542   4433445                   8999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~  256 (280)
                      .+++++ ....++|.++. ...++++++|+|+|+|.+|.+++++|+.+|++.++++.+++++.++++++|++.++++++ 
T Consensus       137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~-  213 (343)
T cd08236         137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE-  213 (343)
T ss_pred             HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc-
Confidence            999887 57889999764 778899999999988999999999999999955999998899999999999999998876 


Q ss_pred             CCccHHHHHHHhcCC-CceEEE
Q 023561          257 GDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       257 ~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                        .. .+.+++.+++ +++.+.
T Consensus       214 --~~-~~~~~~~~~~~~~d~vl  232 (343)
T cd08236         214 --ED-VEKVRELTEGRGADLVI  232 (343)
T ss_pred             --cc-HHHHHHHhCCCCCCEEE
Confidence              55 6777777777 665544

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=3.5e-30  Score=233.48  Aligned_cols=215  Identities=28%  Similarity=0.450  Sum_probs=191.9

Q ss_pred             eeeeeecCCCC----CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 023561           17 CRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (280)
Q Consensus        17 ~~a~~~~~~g~----~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   92 (280)
                      |||+++.+++.    ++++++.+.|.+.++||+||+.++++|++|+..+.|..+...+|.++|||++|+|+.+|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68899988883    58898988888999999999999999999999988876655568899999999999999999999


Q ss_pred             CCCCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        93 ~~Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      ++||+|++.+. .+|++|.+|+.+..++|+...+   +|...+|                   +|++|+.++...++++|
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp  138 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPIP  138 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEECC
Confidence            99999976544 6799999999999999998764   4443445                   89999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      +++++.+++.+.+++.|||+++ +..+++++++|+|+|+|++|++++++++..|+ +|+++..++++++.++++|++.++
T Consensus       139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  216 (329)
T cd08298         139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAG  216 (329)
T ss_pred             CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEe
Confidence            9999999999999999999976 88899999999999889999999999999998 889998899999999999998888


Q ss_pred             cCCC
Q 023561          252 NSKN  255 (280)
Q Consensus       252 ~~~~  255 (280)
                      +.+.
T Consensus       217 ~~~~  220 (329)
T cd08298         217 DSDD  220 (329)
T ss_pred             ccCc
Confidence            7653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=5.7e-30  Score=233.37  Aligned_cols=222  Identities=24%  Similarity=0.309  Sum_probs=184.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC-----------CCCCCcccccceeEEEEEe
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-----------PAVFPRILGHEAIGVVESV   85 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~-----------~~~~p~i~G~e~~G~V~~v   85 (280)
                      |||+++.++  ++++++++.|++.++||+||+.++++|+.|+..+.|...           ....|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            588998766  599999999999999999999999999999999887321           1235788999999999999


Q ss_pred             CCCCCC-CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec
Q 023561           86 GENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (280)
Q Consensus        86 G~~v~~-~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  164 (280)
                      |+++++ |++||+|+..+...|+.|..|..|+.             ...+|                   +|++|++++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~-------------~~~~g-------------------~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLS-------------PEAPG-------------------GYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCC-------------cCCCC-------------------ceeeeEEech
Confidence            999987 99999999999999999999932211             01123                   8999999999


Q ss_pred             ccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       165 ~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.++++|+++++.+++ +..++.++|++ ....++++|++|||+|+|.+|.+++++|+.+|++.++++++++++.+++++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~  204 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA  204 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            9999999999999887 55688899987 578899999999999889999999999999999778888889999999999


Q ss_pred             cCCcEEEcCCCCCCccHHH---HHHHhcCC-CceEEE
Q 023561          245 FGVTEFVNSKNCGDKSVSQ---VLLSIYDL-PLLTIS  277 (280)
Q Consensus       245 ~Ga~~vi~~~~~~~~~~~~---~v~~~~~g-g~~~v~  277 (280)
                      +|+++++++++   .+..+   .+.+.+++ +++.+.
T Consensus       205 ~g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~d~vi  238 (341)
T cd08262         205 MGADIVVDPAA---DSPFAAWAAELARAGGPKPAVIF  238 (341)
T ss_pred             cCCcEEEcCCC---cCHHHHHHHHHHHhCCCCCCEEE
Confidence            99999998775   32211   35555655 665444

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.97  E-value=5.8e-30  Score=232.37  Aligned_cols=230  Identities=29%  Similarity=0.458  Sum_probs=199.1

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.+++. +++++++.|++.++||+||++++++|+.|.....|..+. .+|.++|+|++|+|+.+|++++++++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd   78 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD   78 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999998885 999999999999999999999999999999998887653 3688999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCCh
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~  176 (280)
                      +|+..+...|++|.+|..++.++|+....   .|...+|                   +|++|++++..+++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~~  136 (334)
T cd08234          79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNLSF  136 (334)
T ss_pred             EEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCCCH
Confidence            99998888999999999999999988753   4443455                   8999999999999999999999


Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~  256 (280)
                      .+++.+ ..+.+++.++ ...++.++++|+|+|+|.+|.+++++|+..|++.++++++++++.+.++++|++.++++++ 
T Consensus       137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-  213 (334)
T cd08234         137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR-  213 (334)
T ss_pred             HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC-
Confidence            998876 6788898876 7889999999999988999999999999999955888999999999999999998888776 


Q ss_pred             CCccHHHHHHHhcCC-CceEEE
Q 023561          257 GDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       257 ~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                        .++...  +.+.+ ++|.++
T Consensus       214 --~~~~~~--~~~~~~~vd~v~  231 (334)
T cd08234         214 --EDPEAQ--KEDNPYGFDVVI  231 (334)
T ss_pred             --CCHHHH--HHhcCCCCcEEE
Confidence              454444  34444 664444

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.1e-29  Score=228.98  Aligned_cols=233  Identities=27%  Similarity=0.442  Sum_probs=197.6

Q ss_pred             eeeeeecCCC-CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g-~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++++.+ ..+++++++.|.+.++||+||+.++++|++|...+.+.+.....|.++|+|++|+|+.+|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5788888655 349999999999999999999999999999999888875333457899999999999999999999999


Q ss_pred             CEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        96 d~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      |+|+..+. .+|+.|.+|..+....|++..   .+|...+|                   +|++|++++...++++|+++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~~  138 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRK---GIGTQADG-------------------GFAEYVLVPEESLHELPENL  138 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCc---eeeecCCC-------------------ceEEEEEcchHHeEECcCCC
Confidence            99988775 679999999999999998742   13333344                   89999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEE--cCChhHHHHHHHcCCcEEEc
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV--DVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~--~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      ++.+++ +.....++|+++....+++++++|+|.|+|.+|.+++++|+.+|+ +|+++  ..++++.++++++|++++ +
T Consensus       139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~  215 (306)
T cd08258         139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-N  215 (306)
T ss_pred             CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-C
Confidence            999887 556888999988888899999999998779999999999999999 67666  335568888999999888 8


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++.   .++.+.+.+++++ +++.+.
T Consensus       216 ~~~---~~~~~~l~~~~~~~~vd~vl  238 (306)
T cd08258         216 GGE---EDLAELVNEITDGDGADVVI  238 (306)
T ss_pred             CCc---CCHHHHHHHHcCCCCCCEEE
Confidence            776   7888888888876 665544

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.97  E-value=6e-30  Score=231.00  Aligned_cols=207  Identities=24%  Similarity=0.248  Sum_probs=181.6

Q ss_pred             eeeeeecCCCCC---cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC-CCCCCcccccceeEEEEEeCCCCCCC
Q 023561           17 CRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGV   92 (280)
Q Consensus        17 ~~a~~~~~~g~~---l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~   92 (280)
                      |||+++.+++.+   ++++++|.|.+.++||+||+.++++|++|+..+.|.++ ....|.++|||++|+|+++|+++..+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999887753   78999999999999999999999999999999988764 23468899999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        93 ~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      ++||+|++.+                              ..                   |+|++|+.++...++++|+
T Consensus        81 ~~Gd~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAP------------------------------VH-------------------GTWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEecc------------------------------CC-------------------CcceeEEEEchHHeEECCC
Confidence            9999997431                              11                   2899999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      ++++++++.+.+...++|+++ ...++++|++|||+|+ |.+|++++++|+++|+ .++++..++++.+.++++|+++++
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~  189 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVV  189 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEE
Confidence            999999999888889999865 5688999999999998 9999999999999999 778887788888888889999999


Q ss_pred             cCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          252 NSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++   .++.+.+.+++++ |++.+.
T Consensus       190 ~~~~---~~~~~~i~~~~~~~~~d~v~  213 (324)
T cd08292         190 STEQ---PGWQDKVREAAGGAPISVAL  213 (324)
T ss_pred             cCCC---chHHHHHHHHhCCCCCcEEE
Confidence            8877   7888999999988 776554

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.97  E-value=1.6e-29  Score=230.71  Aligned_cols=227  Identities=27%  Similarity=0.446  Sum_probs=193.8

Q ss_pred             cCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC---CCCCCcccccceeEEEEEeCCCCCCCCCCCEEE
Q 023561           23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVVEGDVVI   99 (280)
Q Consensus        23 ~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~   99 (280)
                      ++++.+++++++|.|.|.++||+||+.++++|+.|..++.+...   ....|.++|+|++|+|+++|++++.|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            57788899999999999999999999999999999987655321   123467899999999999999999999999999


Q ss_pred             ecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhh
Q 023561          100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA  179 (280)
Q Consensus       100 ~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~a  179 (280)
                      +.+...|++|..|..+..++|++...   +|+...|                   +|++|++++.+.++++|+++++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------CFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---EeecCCC-------------------cceeEEEeehHHcEECcCCCChHhh
Confidence            99999999999999999999999743   3333344                   8999999999999999999998655


Q ss_pred             cccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCc
Q 023561          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (280)
Q Consensus       180 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~  259 (280)
                       ++..++.++++++  ....++|++|+|.|+|++|.+++++|+.+|.+.|++++++++|.++++++|++.++++++   .
T Consensus       143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~  216 (340)
T TIGR00692       143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK---E  216 (340)
T ss_pred             -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc---c
Confidence             4566888888865  345678999999888999999999999999955888888899999999999999998876   7


Q ss_pred             cHHHHHHHhcCC-CceEEE
Q 023561          260 SVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       260 ~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++.+.+.+++++ +++.+.
T Consensus       217 ~~~~~l~~~~~~~~~d~vl  235 (340)
T TIGR00692       217 DVVKEVADLTDGEGVDVFL  235 (340)
T ss_pred             CHHHHHHHhcCCCCCCEEE
Confidence            788889888877 775554

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.97  E-value=3.7e-30  Score=229.29  Aligned_cols=184  Identities=21%  Similarity=0.319  Sum_probs=153.7

Q ss_pred             ccccceeEEEEEeCCCCC------CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCce
Q 023561           73 ILGHEAIGVVESVGENVD------GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET  146 (280)
Q Consensus        73 i~G~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~  146 (280)
                      ++|||++|+|+++|++++      +|++||||++.+..+|+.|.+|+.|+++.|++..+   +|....+           
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-----------   66 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD-----------   66 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc-----------
Confidence            579999999999999998      89999999999999999999999999999998654   2321100           


Q ss_pred             eecccccceeeeeEEeecc-cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcC
Q 023561          147 IHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  225 (280)
Q Consensus       147 ~~~~~~~g~~~~~~~~~~~-~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g  225 (280)
                       ......|+|+||+++|.. +++++|+++++++++.+.+.+.|+|+++ +.....+|++|+|+|+|++|++++|+|+.+|
T Consensus        67 -~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        67 -SGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             -CCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence             000012499999999987 7999999999999999998999999965 4556679999999999999999999999999


Q ss_pred             CCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          226 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       226 ~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++|++++++++|+++++++|++.++++++     ..+.+++++++ |+|.++
T Consensus       145 ~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-----~~~~~~~~~~~~g~d~vi  192 (280)
T TIGR03366       145 AARVVAADPSPDRRELALSFGATALAEPEV-----LAERQGGLQNGRGVDVAL  192 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHcCCcEecCchh-----hHHHHHHHhCCCCCCEEE
Confidence            966999999999999999999999998654     24567777777 765544

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.97  E-value=1.9e-29  Score=229.76  Aligned_cols=215  Identities=30%  Similarity=0.478  Sum_probs=179.4

Q ss_pred             eecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhh-cCCCC--CCCCcccccceeEEEEEeCCCCCCCCCCCE
Q 023561           21 IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFP--AVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (280)
Q Consensus        21 ~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~-g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~   97 (280)
                      ++++.+. ++++++++|.+.++||+||+.++++|++|+.... +....  ...|.++|||++|+|+++|+++.+|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            4566665 9999999999999999999999999999988763 32211  235778999999999999999999999999


Q ss_pred             EEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChh
Q 023561           98 VIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPN  177 (280)
Q Consensus        98 V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~  177 (280)
                      |+..+..+|+.|.+|..|+.++|++..+   ++... +             .....|+|++|++++.+.++++|+++++.
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~-~-------------~~~~~g~~~~~v~v~~~~~~~iP~~~~~~  143 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAM-R-------------FPHVQGGFREYLVVDASQCVPLPDGLSLR  143 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeecc-c-------------cCCCCCceeeEEEechHHeEECcCCCCHH
Confidence            9999999999999999999999998543   22110 0             00012389999999999999999999999


Q ss_pred             hhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          178 RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       178 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +|+. ..++.++|.++.+.... ++++|||.|+|.+|.+++++|+.+|++.++++++++++.++++++|+++++++++
T Consensus       144 ~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~  219 (339)
T cd08232         144 RAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR  219 (339)
T ss_pred             Hhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc
Confidence            9876 46888999876555455 8999999888999999999999999967899998899999999999999998765

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=8.5e-30  Score=230.06  Aligned_cols=183  Identities=21%  Similarity=0.296  Sum_probs=150.1

Q ss_pred             eeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecC-hhhhhhhhcCCCC---CCCCcccccceeEEEEEeCCCCCC
Q 023561           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLC-HSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        16 ~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~-~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      ++||+++.+++. +++++++.|+|+++|||||+++++|| ++|++++.|..+.   ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            578999988876 99999999999999999999999996 7999988887643   2579999999999999999998 6


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      |++||||+..    |..|..|..               |  ..|                   +|+||++++.+.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~---------------~--~~G-------------------~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVR---------------G--LFG-------------------GASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Ccccccccc---------------c--cCC-------------------cccceEEcCHHHceeCC
Confidence            9999999863    222322210               1  123                   89999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++++++. +.+. ++.|||+++.+ . ..++++++|+|+|++|++++|+|+.+|++.|++++.+++|++.+++
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~  187 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG  187 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence            9999864 4444 67899997644 3 3468899999999999999999999999778888888888877654

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.97  E-value=3.7e-29  Score=228.39  Aligned_cols=195  Identities=21%  Similarity=0.207  Sum_probs=162.9

Q ss_pred             cEEEEeecCCCC-CCeEEEEeeeeecChhhhhhhh---cCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCC
Q 023561           29 LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA  104 (280)
Q Consensus        29 l~~~~~~~p~~~-~~eVlIkv~~~~i~~~D~~~~~---g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~  104 (280)
                      +++++++.|+|. ++||||||+++|||+.|...+.   +......+|.++|||++|+|+++|+++++|++||+|+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            889999999875 9999999999999999864332   1111124678999999999999999999999999996310  


Q ss_pred             CCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhh----hc
Q 023561          105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----AC  180 (280)
Q Consensus       105 ~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~----aa  180 (280)
                                                                       ++|+||++++.+.++++|+++++.+    ++
T Consensus       101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                             1699999999999999999864432    44


Q ss_pred             ccchhhHHHHHHHHHHcCCCCC--CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcEEEcCCCC
Q 023561          181 LLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNC  256 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~~~~g--~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~  256 (280)
                      .+..++.|||+++.+..++++|  ++|||+|+ |++|++++|+|+++|+.+|++++++++|.+++++ +|+++++++++ 
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-  210 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-  210 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-
Confidence            5667899999988777788877  99999998 9999999999999998679999999999999887 99999999887 


Q ss_pred             CCccHHHHHHHhcCCCceEEE
Q 023561          257 GDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       257 ~~~~~~~~v~~~~~gg~~~v~  277 (280)
                        .++.+.+++++++|+|.+.
T Consensus       211 --~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         211 --DNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             --CCHHHHHHHHCCCCceEEE
Confidence              7888999988765765554

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.97  E-value=4.1e-29  Score=226.99  Aligned_cols=209  Identities=21%  Similarity=0.202  Sum_probs=177.5

Q ss_pred             eeeeecCC---CCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 023561           18 RAAIATAP---GEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (280)
Q Consensus        18 ~a~~~~~~---g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   92 (280)
                      ||+++.++   +++  ++++++|.|+|+++||+||++++++|+.|..++.+..+...+|.++|+|++|+|+++|+++..|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            57788776   443  8888999999999999999999999999999888866544568899999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        93 ~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      ++||+|+...                           +...+|                   +|++|++++.+.++++|+
T Consensus        81 ~~Gd~V~~~~---------------------------~~~~~g-------------------~~~~~~~v~~~~~~~ip~  114 (336)
T TIGR02817        81 KPGDEVWYAG---------------------------DIDRPG-------------------SNAEFHLVDERIVGHKPK  114 (336)
T ss_pred             CCCCEEEEcC---------------------------CCCCCC-------------------cccceEEEcHHHcccCCC
Confidence            9999997421                           011123                   899999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCC-----CCEEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHHc
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      ++++++++.++++..|||.++....++++     |++|||+|+ |++|.+++++|+.+ |+ +|+++.+++++.+.++++
T Consensus       115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~  193 (336)
T TIGR02817       115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL  193 (336)
T ss_pred             CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence            99999999999999999998878888877     999999997 99999999999998 99 899998889999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          246 GVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       246 Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      |++++++++.    ++.+.+.+..+++++.+.
T Consensus       194 g~~~~~~~~~----~~~~~i~~~~~~~vd~vl  221 (336)
T TIGR02817       194 GAHHVIDHSK----PLKAQLEKLGLEAVSYVF  221 (336)
T ss_pred             CCCEEEECCC----CHHHHHHHhcCCCCCEEE
Confidence            9999998653    566777775433665554

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.97  E-value=1.6e-28  Score=222.43  Aligned_cols=210  Identities=20%  Similarity=0.204  Sum_probs=184.8

Q ss_pred             eeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        16 ~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      +|||+++.++|.+  +++++++.|.|.++||+||+.++|+|++|+.+..+.++...+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            5899999887764  88999999999999999999999999999998888765545688999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+....                             .                   .|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~-----------------------------~-------------------~g~~~~~v~v~~~~~~~lp~~  112 (327)
T PRK10754         81 VGDRVVYAQS-----------------------------A-------------------LGAYSSVHNVPADKAAILPDA  112 (327)
T ss_pred             CCCEEEECCC-----------------------------C-------------------CcceeeEEEcCHHHceeCCCC
Confidence            9999963210                             0                   138999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+.+...++|.++.....+++|++|+|+|+ |.+|.+++++++.+|+ .+++++.++++++.++++|++++++
T Consensus       113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~  191 (327)
T PRK10754        113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVIN  191 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEc
Confidence            9999999888899999998777788999999999986 9999999999999999 7888888999999999999999998


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      .++   .++.+.+++++++ +++.+.
T Consensus       192 ~~~---~~~~~~~~~~~~~~~~d~vl  214 (327)
T PRK10754        192 YRE---ENIVERVKEITGGKKVRVVY  214 (327)
T ss_pred             CCC---CcHHHHHHHHcCCCCeEEEE
Confidence            876   7888899999888 765444

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.8e-28  Score=223.94  Aligned_cols=223  Identities=25%  Similarity=0.311  Sum_probs=178.5

Q ss_pred             eeeeeecCCCCC--cEEEE-eecCCCCCCeEEEEeeeeecChhhhhhhhcCCC--------------------CCCCCcc
Q 023561           17 CRAAIATAPGEP--LVIDE-VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------------------PAVFPRI   73 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~-~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~--------------------~~~~p~i   73 (280)
                      |||+++..++.+  +++++ ++.|.|.+++|+||+.++++|++|+.++.|.++                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            578888876643  55554 577788999999999999999999998877542                    1346889


Q ss_pred             cccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeeccccc
Q 023561           74 LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSV  153 (280)
Q Consensus        74 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~  153 (280)
                      +|||++|+|+++|+++..|++||+|+..+...|++|..|.        ....   .|...+|                  
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~--------~~~~---~~~~~~g------------------  131 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPA--------DIDY---IGSERDG------------------  131 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccc--------cccc---cCCCCCc------------------
Confidence            9999999999999999999999999988888887765532        1111   2222234                  


Q ss_pred             ceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE
Q 023561          154 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (280)
Q Consensus       154 g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~  232 (280)
                       +|++|+.++...++++|+++++.+++.+.+++.|+|.++ ....+++|++|+|+|+ |++|++++++|+.+|+ +++++
T Consensus       132 -~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~  208 (350)
T cd08274         132 -GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV  208 (350)
T ss_pred             -cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence             899999999999999999999999999999999999965 7788999999999998 9999999999999999 67777


Q ss_pred             cCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          233 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       233 ~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ..++ +++.++++|++.+++...   ..+.+  .+.+++ ++|.+.
T Consensus       209 ~~~~-~~~~~~~~g~~~~~~~~~---~~~~~--~~~~~~~~~d~vi  248 (350)
T cd08274         209 AGAA-KEEAVRALGADTVILRDA---PLLAD--AKALGGEPVDVVA  248 (350)
T ss_pred             eCch-hhHHHHhcCCeEEEeCCC---ccHHH--HHhhCCCCCcEEE
Confidence            7655 888889999987666543   34433  555666 665444

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.97  E-value=2.2e-28  Score=223.20  Aligned_cols=208  Identities=22%  Similarity=0.244  Sum_probs=172.2

Q ss_pred             ceeeeeeecCCCC-CcEEEEeec----CCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccce--eEEEEEeC
Q 023561           15 IQCRAAIATAPGE-PLVIDEVIV----DPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEA--IGVVESVG   86 (280)
Q Consensus        15 ~~~~a~~~~~~g~-~l~~~~~~~----p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~--~G~V~~vG   86 (280)
                      .-+|+++...+.. .|++++.++    |+|+++||||||++++||+.|+..+.|.... ...|.++|++.  .|.+..+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~   85 (338)
T cd08295           6 VILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVD   85 (338)
T ss_pred             EEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEe
Confidence            3467777644443 399999887    8899999999999999999999998885432 24578889754  45555678


Q ss_pred             CCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec-c
Q 023561           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-A  165 (280)
Q Consensus        87 ~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~  165 (280)
                      +++..|++||+|+..                                                    |+|+||++++. .
T Consensus        86 ~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~  113 (338)
T cd08295          86 SGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQ  113 (338)
T ss_pred             cCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchh
Confidence            888899999999521                                                    27999999999 7


Q ss_pred             cEEEcC-CCCChh-hhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          166 HVVKVD-PTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       166 ~~~~iP-~~ls~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++| +++++. +++++.+++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++|.+++
T Consensus       114 ~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~  192 (338)
T cd08295         114 DLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLL  192 (338)
T ss_pred             ceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999995 678886 788899999999998878889999999999998 9999999999999999 799999999999999


Q ss_pred             HH-cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          243 KR-FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       243 ~~-~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++ +|+++++++++  ++++.+.+++.+++|++.++
T Consensus       193 ~~~lGa~~vi~~~~--~~~~~~~i~~~~~~gvd~v~  226 (338)
T cd08295         193 KNKLGFDDAFNYKE--EPDLDAALKRYFPNGIDIYF  226 (338)
T ss_pred             HHhcCCceeEEcCC--cccHHHHHHHhCCCCcEEEE
Confidence            98 99999999754  14788888887765765544

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.97  E-value=2.3e-28  Score=221.33  Aligned_cols=200  Identities=20%  Similarity=0.213  Sum_probs=168.2

Q ss_pred             eeeeeeecCC--CCC----cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           16 QCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        16 ~~~a~~~~~~--g~~----l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      +||||++.++  |++    +++++++.|+|+++||||||++++||+.|......  . ...|.++|+|++|+|++   .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~-~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L-NEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C-CCCCcEecceEEEEEec---CC
Confidence            6899999883  433    88999999999999999999999999887652221  1 13588999999999995   44


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc---c
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA---H  166 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~  166 (280)
                      +.|++||+|+..                                                    ++|++|++++..   .
T Consensus        76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~  103 (329)
T cd08294          76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD  103 (329)
T ss_pred             CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence            579999999631                                                    168999999999   9


Q ss_pred             EEEcCCCCCh-----hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          167 VVKVDPTVPP-----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       167 ~~~iP~~ls~-----~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ++++|++++.     .+++++++++.|||+++.+..++++|++|||+|+ |++|.+++|+|+.+|+ +|+++++++++.+
T Consensus       104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~  182 (329)
T cd08294         104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA  182 (329)
T ss_pred             eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            9999999982     2234677899999998888899999999999997 9999999999999999 7999999999999


Q ss_pred             HHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          241 IGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       241 ~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++|+++++++++   +++.+.+++++++|++.+.
T Consensus       183 ~l~~~Ga~~vi~~~~---~~~~~~v~~~~~~gvd~vl  216 (329)
T cd08294         183 WLKELGFDAVFNYKT---VSLEEALKEAAPDGIDCYF  216 (329)
T ss_pred             HHHHcCCCEEEeCCC---ccHHHHHHHHCCCCcEEEE
Confidence            999999999999987   7888888888766765544

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.96  E-value=3.7e-28  Score=221.32  Aligned_cols=212  Identities=24%  Similarity=0.268  Sum_probs=178.5

Q ss_pred             eeeeeecCCCCC---cEEEEeecCCCCC-CeEEEEeeeeecChhhhhhhhcCCCCC-C----CCcccccceeEEEEEeCC
Q 023561           17 CRAAIATAPGEP---LVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKMKDFPA-V----FPRILGHEAIGVVESVGE   87 (280)
Q Consensus        17 ~~a~~~~~~g~~---l~~~~~~~p~~~~-~eVlIkv~~~~i~~~D~~~~~g~~~~~-~----~p~i~G~e~~G~V~~vG~   87 (280)
                      |||+++.+.+.+   +.++++|.|.|.+ +||+||+.++++|++|...+.|..+.. .    .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            789999988875   8999999999888 999999999999999999988875421 2    577899999999999999


Q ss_pred             CCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccE
Q 023561           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (280)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  167 (280)
                      ++..|++||+|+....                             ..                   |+|++|+.++...+
T Consensus        81 ~v~~~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP-----------------------------GL-------------------GTWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC-----------------------------CC-------------------ccchheEeccHHHe
Confidence            9999999999974321                             11                   38999999999999


Q ss_pred             EEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHH
Q 023561          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIG  242 (280)
Q Consensus       168 ~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~----~~~~~~  242 (280)
                      +++|+++++.+++.+++.+.|+|+++.....++++++|||+|+ |++|++++++|+..|+ +++++..++    ++.+.+
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  191 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL  191 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence            9999999999999999999999998877788999999999998 9999999999999999 666666554    678888


Q ss_pred             HHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          243 KRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       243 ~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++|+++++++++....++.+.+..+++++++.+.
T Consensus       192 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vl  226 (341)
T cd08290         192 KALGADHVLTEEELRSLLATELLKSAPGGRPKLAL  226 (341)
T ss_pred             HhcCCCEEEeCcccccccHHHHHHHHcCCCceEEE
Confidence            89999999988761001677778877765554443

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.96  E-value=2e-28  Score=211.02  Aligned_cols=195  Identities=24%  Similarity=0.326  Sum_probs=171.1

Q ss_pred             CcceeeeeeecCCCCC---cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCC
Q 023561           13 KPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~---l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      ++...|++++.++|+|   ++++++++|....++|+||.+|+.||++|+..++|.+|- +.+|.+-|.|++|+|+.+|++
T Consensus        16 ~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~   95 (354)
T KOG0025|consen   16 MPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSN   95 (354)
T ss_pred             cccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCC
Confidence            5567899999999988   888999999988888999999999999999999999986 468999999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEE
Q 023561           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (280)
Q Consensus        89 v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  168 (280)
                      +++|++||+|+....                                                +.|+|++|.+.+++.++
T Consensus        96 vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~~e~~Li  127 (354)
T KOG0025|consen   96 VKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVFSESDLI  127 (354)
T ss_pred             cCccCCCCeEeecCC------------------------------------------------CCccceeeEeecccceE
Confidence            999999999985432                                                12489999999999999


Q ss_pred             EcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh----HHHHHH
Q 023561          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGK  243 (280)
Q Consensus       169 ~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~----~~~~~~  243 (280)
                      ++++.++.+.||++..+..|||+.+.+-.++++||+|+-.|+ +++|.+.+|+||+.|.+.|-++ |+..    -.+.++
T Consensus       128 ~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvV-RdR~~ieel~~~Lk  206 (354)
T KOG0025|consen  128 KVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVV-RDRPNIEELKKQLK  206 (354)
T ss_pred             EcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEe-ecCccHHHHHHHHH
Confidence            999999999999999999999998888899999999999998 9999999999999999655555 4433    334455


Q ss_pred             HcCCcEEEcCCCC
Q 023561          244 RFGVTEFVNSKNC  256 (280)
Q Consensus       244 ~~Ga~~vi~~~~~  256 (280)
                      .+||++||...++
T Consensus       207 ~lGA~~ViTeeel  219 (354)
T KOG0025|consen  207 SLGATEVITEEEL  219 (354)
T ss_pred             HcCCceEecHHHh
Confidence            6999999976653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.96  E-value=2.7e-27  Score=217.30  Aligned_cols=211  Identities=18%  Similarity=0.243  Sum_probs=169.3

Q ss_pred             CCcceeeeeeecC-C-CC----CcEEEE---eecCC-CCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCccccc--cee
Q 023561           12 GKPIQCRAAIATA-P-GE----PLVIDE---VIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH--EAI   79 (280)
Q Consensus        12 ~~~~~~~a~~~~~-~-g~----~l~~~~---~~~p~-~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~--e~~   79 (280)
                      +...++|.+++.+ + |.    .|++++   .+.|. ++++|||||+.++++|+.|...+.+.......|.++|+  |++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~   83 (348)
T PLN03154          4 GQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGF   83 (348)
T ss_pred             CccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEee
Confidence            3445678888843 2 21    288877   35553 47999999999999999988755442222235889998  889


Q ss_pred             EEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeee
Q 023561           80 GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY  159 (280)
Q Consensus        80 G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~  159 (280)
                      |+|..+|++++.|++||+|+..                                                    |+|+||
T Consensus        84 G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~aey  111 (348)
T PLN03154         84 GVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEEY  111 (348)
T ss_pred             EEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEEE
Confidence            9999999999999999999521                                                    279999


Q ss_pred             EEeecc--cEEE--cCCCCChh-hhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc
Q 023561          160 TVLDIA--HVVK--VDPTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       160 ~~~~~~--~~~~--iP~~ls~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      ++++..  ++++  +|+++++. +++++++++.|||+++.+...+++|++|||+|+ |++|++++|+|+.+|+ +|++++
T Consensus       112 ~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~  190 (348)
T PLN03154        112 SLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSA  190 (348)
T ss_pred             EEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEc
Confidence            999875  3544  58999986 678889999999998878889999999999998 9999999999999999 799999


Q ss_pred             CChhHHHHHH-HcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          234 VISEKFEIGK-RFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       234 ~~~~~~~~~~-~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++++|+++++ ++|+++++|+++  .+++.+.+++++++|+|.++
T Consensus       191 ~~~~k~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~gvD~v~  233 (348)
T PLN03154        191 GSSQKVDLLKNKLGFDEAFNYKE--EPDLDAALKRYFPEGIDIYF  233 (348)
T ss_pred             CCHHHHHHHHHhcCCCEEEECCC--cccHHHHHHHHCCCCcEEEE
Confidence            9999999997 799999999864  13677888888766775544

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=3.9e-27  Score=213.15  Aligned_cols=230  Identities=25%  Similarity=0.295  Sum_probs=190.6

Q ss_pred             eeeeeecCCC--CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g--~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||++++..+  +.+++++.+.|.+.++|++||+.++++|++|+....+..+. ...|.++|||++|+|+.+|+++++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7899998665  34888888888899999999999999999999988776543 23678899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+......|..+.+      +.|....   +.|...+|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~------~~~~~~~---~~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPP------TAEDEAS---ALGGPIDG-------------------VLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEecccccccccc------ccccccc---ccccccCc-------------------eeeeEEEecHHHeEECCCC
Confidence            999998876655543322      3342211   23333344                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++.+++.+.+.+.++|.++.....+++|++|+|+|+|++|++++++++++|+ +|++++.++++++.++++|++.+++.
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~  211 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINY  211 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcC
Confidence            99999999999999999987777889999999999889999999999999999 78999999999999999999999887


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +.  ..++.+.+++.+++ +++.+.
T Consensus       212 ~~--~~~~~~~~~~~~~~~~~d~~i  234 (336)
T cd08276         212 RT--TPDWGEEVLKLTGGRGVDHVV  234 (336)
T ss_pred             Cc--ccCHHHHHHHHcCCCCCcEEE
Confidence            53  25677888888887 765544

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.96  E-value=2.8e-27  Score=214.61  Aligned_cols=188  Identities=21%  Similarity=0.197  Sum_probs=158.5

Q ss_pred             cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCC
Q 023561           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTE  108 (280)
Q Consensus        29 l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~  108 (280)
                      |++++++.|+|+++||||||+++++|+.+.   .|.+.....|.++|.|++|+|+++|+   .|++||+|+..       
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS-------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence            889999999999999999999999999764   34333223478999999999999874   59999999631       


Q ss_pred             ChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc----CCCCChhhh-cccc
Q 023561          109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV----DPTVPPNRA-CLLS  183 (280)
Q Consensus       109 c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i----P~~ls~~~a-a~l~  183 (280)
                                                                   ++|++|++++.+.+.++    |++++++++ ++++
T Consensus        86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~  120 (325)
T TIGR02825        86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG  120 (325)
T ss_pred             ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence                                                         15899999999888877    899999987 6788


Q ss_pred             hhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHH
Q 023561          184 CGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVS  262 (280)
Q Consensus       184 ~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~  262 (280)
                      +++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.++++++|+++++++++  .+.+.
T Consensus       121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~--~~~~~  197 (325)
T TIGR02825       121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT--VKSLE  197 (325)
T ss_pred             cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc--cccHH
Confidence            899999998888899999999999997 9999999999999999 7999999999999999999999999875  12566


Q ss_pred             HHHHHhcCCCceEEE
Q 023561          263 QVLLSIYDLPLLTIS  277 (280)
Q Consensus       263 ~~v~~~~~gg~~~v~  277 (280)
                      +.+++.+++|+|.+.
T Consensus       198 ~~~~~~~~~gvdvv~  212 (325)
T TIGR02825       198 ETLKKASPDGYDCYF  212 (325)
T ss_pred             HHHHHhCCCCeEEEE
Confidence            666666554765544

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.96  E-value=1.3e-27  Score=218.31  Aligned_cols=214  Identities=26%  Similarity=0.347  Sum_probs=178.9

Q ss_pred             eeeeeecCCC-CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g-~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||++++.++ .++++++++.|+|+++||+||+.++++|++|+....+.. ....|.++|||++|+|+.+|++++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG   79 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence            6899999884 348999999999999999999999999999988775543 12347789999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|+......|+                      +...+                   |+|++|++++...++++|++++
T Consensus        80 d~V~~~~~~~~~----------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~  118 (339)
T cd08249          80 DRVAGFVHGGNP----------------------NDPRN-------------------GAFQEYVVADADLTAKIPDNIS  118 (339)
T ss_pred             CEEEEEeccccC----------------------CCCCC-------------------CcccceEEechhheEECCCCCC
Confidence            999865432211                      11112                   3899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCC----------CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANV----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~----------~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.+++.+++.+.|+|.++.+..++          +++++|+|+|+ |.+|++++++|+.+|+ .|+++. +++|++.+++
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~  196 (339)
T cd08249         119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS  196 (339)
T ss_pred             HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence            999999999999999987665544          78999999998 9999999999999999 677776 5689999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          245 FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       245 ~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +|+++++++++   .++.+.++++++++++.+.
T Consensus       197 ~g~~~v~~~~~---~~~~~~l~~~~~~~~d~vl  226 (339)
T cd08249         197 LGADAVFDYHD---PDVVEDIRAATGGKLRYAL  226 (339)
T ss_pred             cCCCEEEECCC---chHHHHHHHhcCCCeeEEE
Confidence            99999999877   7888888888766765444

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.96  E-value=3.3e-27  Score=213.66  Aligned_cols=209  Identities=22%  Similarity=0.264  Sum_probs=179.5

Q ss_pred             eeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCC
Q 023561           16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV   92 (280)
Q Consensus        16 ~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~   92 (280)
                      ||||+++.+++..  +++++.+.|.+.++||+||+.++++|+.|.....+..+. ...|.++|||++|+|+++|+++..+
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            6899999987753  777788888899999999999999999999888876532 3456789999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        93 ~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      ++||+|+...                              .+                   |+|++|++++..+++++|+
T Consensus        81 ~~Gd~V~~~~------------------------------~~-------------------g~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALL------------------------------PG-------------------GGYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEec------------------------------CC-------------------CceeeEEEecHHHcEeCCC
Confidence            9999996321                              11                   2899999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      ++++.+++.+.+++.++|.++.+...++++++|+|+|+ |.+|++++++|+++|+ .++++.+++++.+.++++|+++++
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  190 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILI  190 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence            99999999999999999998877788999999999997 9999999999999999 666688889999999999999999


Q ss_pred             cCCCCCCcc-HHHHHHHhcCC-CceEEE
Q 023561          252 NSKNCGDKS-VSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       252 ~~~~~~~~~-~~~~v~~~~~g-g~~~v~  277 (280)
                      ++..   .+ +.+.+++.+++ +++.+.
T Consensus       191 ~~~~---~~~~~~~~~~~~~~~~~d~~i  215 (334)
T PTZ00354        191 RYPD---EEGFAPKVKKLTGEKGVNLVL  215 (334)
T ss_pred             ecCC---hhHHHHHHHHHhCCCCceEEE
Confidence            8765   44 77888888877 765544

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=3.1e-27  Score=206.89  Aligned_cols=204  Identities=31%  Similarity=0.457  Sum_probs=175.3

Q ss_pred             eEEEEeeeeecChhhhhhhhcCCC-CCCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCC
Q 023561           43 EVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS  121 (280)
Q Consensus        43 eVlIkv~~~~i~~~D~~~~~g~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~  121 (280)
                      ||+||+.++++|+.|+..+.+..+ ....|.++|||++|+|+++|+++..|++||+|+..+...|+.|++|+.    .|+
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            689999999999999999988764 335678999999999999999999999999999999999999999997    676


Q ss_pred             CCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCC
Q 023561          122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV  201 (280)
Q Consensus       122 ~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~  201 (280)
                      ....   .+....|                   +|++|+.++...++++|+++++.+++.+++++.+||.++.....+.+
T Consensus        77 ~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  134 (271)
T cd05188          77 GGGI---LGEGLDG-------------------GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP  134 (271)
T ss_pred             CCCE---eccccCC-------------------cceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence            6543   3333344                   89999999999999999999999999998999999998777666799


Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++|+|+|+|++|++++++++..|. +|+++++++++.+.++++|++++++..+   .++.+.+. .+.+ ++|.++
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~~~~~~~d~vi  206 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE---EDLEEELR-LTGGGGADVVI  206 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc---CCHHHHHH-HhcCCCCCEEE
Confidence            9999999995599999999999997 8999999999999999999999988776   66666666 5555 665554

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.96  E-value=7.6e-27  Score=210.68  Aligned_cols=193  Identities=20%  Similarity=0.217  Sum_probs=164.5

Q ss_pred             eeeeeecCCCC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||++++++++  +++++++|.|.|.++||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++  +++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            68999998886  6999999999999999999999999999999998887543 235788999999999998  456799


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+....                        ..|+..+|                   +|++|+.++.++++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~g~~~~g-------------------~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGY------------------------DLGMNTDG-------------------GFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEccc------------------------ccCCCCCc-------------------eeEEEEEEchhhEEECCCC
Confidence            9999975421                        02333344                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHc--CCC-CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTA--NVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~--~~~-~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +++.+++.+.+.+.++|.++....  .+. .+++|+|+|+ |.+|++++++|+.+|+ .|+++++++++++.++++|+++
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (325)
T cd05280         116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE  194 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence            999999999999999998765443  335 3579999998 9999999999999999 6999999999999999999999


Q ss_pred             EEcCCC
Q 023561          250 FVNSKN  255 (280)
Q Consensus       250 vi~~~~  255 (280)
                      ++++++
T Consensus       195 ~~~~~~  200 (325)
T cd05280         195 VLDRED  200 (325)
T ss_pred             EEcchh
Confidence            988654

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.96  E-value=9.2e-27  Score=210.03  Aligned_cols=209  Identities=21%  Similarity=0.255  Sum_probs=179.1

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC---CCCCcccccceeEEEEEeCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      |||+++++++.+  +++++.+.|.+.++||+||+.++++|++|+....|..+.   ...|.++|||++|+|+.+|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            688998876653  667777777789999999999999999999988776432   345788999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      +++||+|+....                            ..+                   |+|++|+.++..+++++|
T Consensus        81 ~~~Gd~V~~~~~----------------------------~~~-------------------g~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG----------------------------RAG-------------------GGYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC----------------------------CCC-------------------ceeeEEEEEchHHeEeCC
Confidence            999999975321                            112                   389999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      +++++.+++.+.+.+.|+|. +....+++++++|+|+|+ |.+|.+++++|+.+|+ .|+++++++++.+.++++|++.+
T Consensus       114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~  191 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVA  191 (324)
T ss_pred             CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEE
Confidence            99999999999989999964 678889999999999997 9999999999999999 79999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++.+   .++.+.+.+++++ +++.+.
T Consensus       192 ~~~~~---~~~~~~~~~~~~~~~~d~vl  216 (324)
T cd08244         192 VDYTR---PDWPDQVREALGGGGVTVVL  216 (324)
T ss_pred             EecCC---ccHHHHHHHHcCCCCceEEE
Confidence            98876   7788888888887 665554

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.96  E-value=1.5e-26  Score=209.65  Aligned_cols=206  Identities=26%  Similarity=0.281  Sum_probs=176.5

Q ss_pred             eeeeeeecCCCC----CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCC
Q 023561           16 QCRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        16 ~~~a~~~~~~g~----~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      .|||+++.+++.    ++++++++.|.|.++|++||+.++++|++|+....|..+. ..+|.++|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            389999987664    5999999999999999999999999999999988876543 35688999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      .+++||+|+...                                                  .|+|++|+.++...++++
T Consensus        81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence            999999997421                                                  138999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      |++  ..+++.+.+++.|+|+++.+...+.++++|+|+|+ |.+|.+++++++..|+ .|+++.+++++.+.++++|++.
T Consensus       111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  187 (329)
T cd08250         111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDR  187 (329)
T ss_pred             CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCce
Confidence            997  34667788899999998877788999999999997 9999999999999999 7888888899999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++.++   .++.+.+.+..+.+++.+.
T Consensus       188 v~~~~~---~~~~~~~~~~~~~~vd~v~  212 (329)
T cd08250         188 PINYKT---EDLGEVLKKEYPKGVDVVY  212 (329)
T ss_pred             EEeCCC---ccHHHHHHHhcCCCCeEEE
Confidence            988776   6677777766544665444

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.95  E-value=1.6e-26  Score=208.99  Aligned_cols=211  Identities=15%  Similarity=0.159  Sum_probs=169.3

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC-CCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~-~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++.+++++  +++++++.|.|.++||+||+.++++|++|.....+.. ....+|.++|||++|+|++.|  +..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            689999988764  8899999999999999999999999999987665321 122458899999999999954  56799


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+..+.                        ..|...+|                   +|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSY------------------------DLGVSHHG-------------------GYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEccc------------------------ccCCCCCC-------------------cceeEEEEcHHHeEECCCC
Confidence            9999975421                        02222334                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHH--cCC-CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRT--ANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~--~~~-~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +++.+++.+++...|+|.++...  ..+ ..+++|+|+|+ |.+|.+++++|+.+|+ +|+++.+++++.+.++++|+++
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKE  194 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCE
Confidence            99999999999999998865432  233 34789999998 9999999999999999 7899999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++++++   . ..+.+.++++++++.+.
T Consensus       195 v~~~~~---~-~~~~~~~~~~~~~d~vl  218 (326)
T cd08289         195 VIPREE---L-QEESIKPLEKQRWAGAV  218 (326)
T ss_pred             EEcchh---H-HHHHHHhhccCCcCEEE
Confidence            998765   3 34556666433665443

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=2.9e-26  Score=205.87  Aligned_cols=210  Identities=24%  Similarity=0.303  Sum_probs=176.0

Q ss_pred             eeeeeecCCCC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        17 ~~a~~~~~~g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      ||++++.+.+.  .+++++.+.|.+.++||+||++++++|+.|+....+..+....|.++|||++|+|+++|.  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            57888877664  377778888888999999999999999999999888664445678999999999999995  57999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|+....                        .++...+|                   +|++|+.++...++++|+++
T Consensus        79 Gd~V~~~~~------------------------~~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~~  115 (320)
T cd08243          79 GQRVATAMG------------------------GMGRTFDG-------------------SYAEYTLVPNEQVYAIDSDL  115 (320)
T ss_pred             CCEEEEecC------------------------CCCCCCCc-------------------ccceEEEcCHHHcEeCCCCC
Confidence            999975421                        01111223                   89999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      ++.+++.+.+++.++|.++.+...+.+|++|+|+|+ |.+|.+++++|+.+|+ .|+++..++++.+.++++|++++++.
T Consensus       116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  194 (320)
T cd08243         116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID  194 (320)
T ss_pred             CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec
Confidence            999999999999999998877788999999999998 9999999999999999 78999889999999999999888754


Q ss_pred             CCCCCccHHHHHHHhcCCCceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                       .   .++.+.++++ +.+++.+.
T Consensus       195 -~---~~~~~~i~~~-~~~~d~vl  213 (320)
T cd08243         195 -D---GAIAEQLRAA-PGGFDKVL  213 (320)
T ss_pred             -C---ccHHHHHHHh-CCCceEEE
Confidence             3   4677778877 44765554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.95  E-value=2.1e-26  Score=210.25  Aligned_cols=208  Identities=20%  Similarity=0.224  Sum_probs=171.4

Q ss_pred             eeeeeecCCCCC---cEEEEeecCCCC-CCeEEEEeeeeecChhhhhhhhcCCC---------------CCCCCcccccc
Q 023561           17 CRAAIATAPGEP---LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDF---------------PAVFPRILGHE   77 (280)
Q Consensus        17 ~~a~~~~~~g~~---l~~~~~~~p~~~-~~eVlIkv~~~~i~~~D~~~~~g~~~---------------~~~~p~i~G~e   77 (280)
                      |||+++++++++   +++++++.|.|. ++||+||+.++++|++|+.+..+...               ....|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            688998888875   899999999994 99999999999999999998877421               12458899999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceee
Q 023561           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (280)
Q Consensus        78 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~  157 (280)
                      ++|+|+.+|+++.+|++||+|+..+.                           ...+                   |+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~---------------------------~~~~-------------------g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVP---------------------------PWSQ-------------------GTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecC---------------------------CCCC-------------------ccce
Confidence            99999999999999999999975321                           0112                   3899


Q ss_pred             eeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCC----CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE
Q 023561          158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV----GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (280)
Q Consensus       158 ~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~----g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~  232 (280)
                      +|+.++...++++|+++++.+++.+.+++.|+|.++.+...+.+    |++|+|+|+ |++|.+++++++.+|+ .|+++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~  193 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT  193 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence            99999999999999999999999999999999998767666654    999999997 9999999999999999 67777


Q ss_pred             cCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          233 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       233 ~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      .++ ++.+.++++|++.+++.++   .++.+.+.+.  +++|.++
T Consensus       194 ~~~-~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~--~~vd~vi  232 (350)
T cd08248         194 CST-DAIPLVKSLGADDVIDYNN---EDFEEELTER--GKFDVIL  232 (350)
T ss_pred             eCc-chHHHHHHhCCceEEECCC---hhHHHHHHhc--CCCCEEE
Confidence            654 6888889999998888765   5555554432  2554443

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.95  E-value=6e-26  Score=206.05  Aligned_cols=210  Identities=24%  Similarity=0.217  Sum_probs=175.4

Q ss_pred             eeeeeecCCCCC-----cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC
Q 023561           17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        17 ~~a~~~~~~g~~-----l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      |||+++++++++     ++.++++.|.+.++||+||+.++++|++|+..+.+..+....|.++|||++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            579999988864     666778888889999999999999999999988776553345778999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      |++||+|.....                           ...+|                   +|++|+.++..+++++|
T Consensus        81 ~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~ip  114 (336)
T cd08252          81 FKVGDEVYYAGD---------------------------ITRPG-------------------SNAEYQLVDERIVGHKP  114 (336)
T ss_pred             CCCCCEEEEcCC---------------------------CCCCc-------------------cceEEEEEchHHeeeCC
Confidence            999999974210                           01123                   89999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCC-----CCEEEEECc-cHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~VlI~G~-g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  244 (280)
                      +++++++++.+++.+.++|.++.+...+.+     |++|+|+|+ |++|.+++++|+.+| + +|+++++++++.+++++
T Consensus       115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~  193 (336)
T cd08252         115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE  193 (336)
T ss_pred             CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence            999999999999999999998777788877     999999997 999999999999999 7 89999989999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          245 FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       245 ~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +|+++++++++    ++.+.++...+++++.+.
T Consensus       194 ~g~~~~~~~~~----~~~~~i~~~~~~~~d~vl  222 (336)
T cd08252         194 LGADHVINHHQ----DLAEQLEALGIEPVDYIF  222 (336)
T ss_pred             cCCcEEEeCCc----cHHHHHHhhCCCCCCEEE
Confidence            99999998753    455566544333665443

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.95  E-value=8.2e-26  Score=204.22  Aligned_cols=207  Identities=17%  Similarity=0.154  Sum_probs=167.2

Q ss_pred             eeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        18 ~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      ||+++.+.+.+  ++++++|.|.+.++||+||+.++++|++|+..+.|..+. ...|.++|||++|+|+.  .++..|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            68888877763  789999999999999999999999999999988886532 34588899999999998  56678999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|+.....                        .|...+|                   +|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGYG------------------------LGVSHDG-------------------GYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccCC------------------------CCCCCCc-------------------cceEEEEEchhheEECCCCC
Confidence            9999754210                        1222233                   89999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHH--cCCCCCC-EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          175 PPNRACLLSCGVSTGVGAAWRT--ANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~--~~~~~g~-~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      ++.+++++.+.+.+++.++...  ..+.+++ +|+|+|+ |.+|.+++++|+.+|+ .++++..++++.+.++++|++++
T Consensus       116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~  194 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEV  194 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEE
Confidence            9999999998999998765332  3478898 9999998 9999999999999999 67777778888899999999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCCCceE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDLPLLT  275 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~gg~~~  275 (280)
                      ++.++   .+.  .++++++++++.
T Consensus       195 ~~~~~---~~~--~~~~~~~~~~d~  214 (323)
T TIGR02823       195 IDRED---LSP--PGKPLEKERWAG  214 (323)
T ss_pred             Ecccc---HHH--HHHHhcCCCceE
Confidence            88654   322  445555445433

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.95  E-value=1.3e-25  Score=201.27  Aligned_cols=213  Identities=27%  Similarity=0.329  Sum_probs=182.2

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      ||++++.+++.+  +++++++.|.+.+++|+|++.++++|++|+....+.... ...|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            578888876653  888899999999999999999999999999888775532 34688999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+..+..                        . ....|                   ++++|+.++...++++|++
T Consensus        81 ~Gd~v~~~~~~------------------------~-~~~~g-------------------~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNLG------------------------W-GRRQG-------------------TAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEeccc------------------------c-CCCCc-------------------ceeeEEEecHHHcEeCCCC
Confidence            99999754310                        0 00123                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+.+++.++|.++....++.+|++++|+|+ |.+|.+++++++..|+ .|+++++++++.+.++++|++.+++
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  195 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFN  195 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998777789999999999997 9999999999999999 7999999999999999999999988


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ...   .++.+.+.+++.+ +++.+.
T Consensus       196 ~~~---~~~~~~~~~~~~~~~~d~vi  218 (325)
T cd08253         196 YRA---EDLADRILAATAGQGVDVII  218 (325)
T ss_pred             CCC---cCHHHHHHHHcCCCceEEEE
Confidence            776   6788888888776 775554

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.5e-25  Score=201.68  Aligned_cols=210  Identities=26%  Similarity=0.380  Sum_probs=180.1

Q ss_pred             eeeeeecCCC--CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        17 ~~a~~~~~~g--~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      |||+++.+++  +.+++++++.|++.+++|+||+.++++|++|+....+.......|.++|||++|+|+.+|+++..+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            6899999988  35999999999999999999999999999999888776533234778999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|+....                           +..+|                   +|++|+.++...++++|+++
T Consensus        81 Gd~V~~~~~---------------------------~~~~~-------------------~~~s~~~~~~~~~~~ip~~~  114 (325)
T cd08271          81 GDRVAYHAS---------------------------LARGG-------------------SFAEYTVVDARAVLPLPDSL  114 (325)
T ss_pred             CCEEEeccC---------------------------CCCCc-------------------cceeEEEeCHHHeEECCCCC
Confidence            999975321                           11123                   89999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +..+++.+.+++.+++.++.+..++.+|++++|+|+ |.+|++++++++..|+ .++.+. ++++.+.++++|++.+++.
T Consensus       115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~  192 (325)
T cd08271         115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDY  192 (325)
T ss_pred             CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecC
Confidence            999999999999999998878888999999999998 8999999999999999 677665 6778888888999999987


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ..   .++.+.+++.+++ +++.+.
T Consensus       193 ~~---~~~~~~~~~~~~~~~~d~vi  214 (325)
T cd08271         193 ND---EDVCERIKEITGGRGVDAVL  214 (325)
T ss_pred             CC---ccHHHHHHHHcCCCCCcEEE
Confidence            76   6777888888777 765554

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.95  E-value=1.2e-25  Score=200.97  Aligned_cols=208  Identities=25%  Similarity=0.321  Sum_probs=179.4

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++.+.+.+  +++++++.|.+.++|++||+.++++|+.|+....+..+. ..+|.++|||++|+|+++|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            689999876543  778888888889999999999999999999888775532 34578999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+...                              .+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALL------------------------------AG-------------------GGYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEec------------------------------CC-------------------CceeEEEEcCHHHhccCCCC
Confidence            999996421                              11                   28999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+..++.++|.++.+...+.++++|+|+|+ |.+|++++++++..|+ .++++.+++++.+.++++|++.+++
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  190 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAIN  190 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998777788999999999997 9999999999999999 7899998999999999999988888


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ...   .++.+.+.+.+.+ +++.++
T Consensus       191 ~~~---~~~~~~~~~~~~~~~~d~vi  213 (323)
T cd05276         191 YRT---EDFAEEVKEATGGRGVDVIL  213 (323)
T ss_pred             CCc---hhHHHHHHHHhCCCCeEEEE
Confidence            776   6777888887766 665544

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.95  E-value=1.7e-25  Score=202.03  Aligned_cols=193  Identities=14%  Similarity=0.126  Sum_probs=161.5

Q ss_pred             eeeeeecCCCC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++.++|.  .++++++|.|.|+++||+||+.++++|++|...+.+.... ...|.++|||++|+|++  +++..++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            68999998775  4999999999999999999999999999999988776532 23578899999999999  7777899


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+.....                        .|...+|                   +|++|++++.+.++++|++
T Consensus        79 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGWG------------------------VGERHWG-------------------GYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCcc------------------------CCCCCCC-------------------cceeEEEEchHHeeeCCCC
Confidence            99999753210                        1111123                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHH--HHcCCC-CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          174 VPPNRACLLSCGVSTGVGAAW--RTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~--~~~~~~-~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +++.+++.+.+.+.+++.++.  +..... ++++|+|+|+ |++|.+++++|+.+|+ +++++..+++|.+.++++|+++
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~  194 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASE  194 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999988888887543  234455 5789999998 9999999999999999 7888888999999999999999


Q ss_pred             EEcCCC
Q 023561          250 FVNSKN  255 (280)
Q Consensus       250 vi~~~~  255 (280)
                      ++++++
T Consensus       195 ~~~~~~  200 (324)
T cd08288         195 IIDRAE  200 (324)
T ss_pred             EEEcch
Confidence            998765

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.95  E-value=4.2e-26  Score=208.14  Aligned_cols=196  Identities=28%  Similarity=0.434  Sum_probs=158.8

Q ss_pred             cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCC----CCCcccccceeEEEEE---eC-CCCCCCCCCCEEEe
Q 023561           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA----VFPRILGHEAIGVVES---VG-ENVDGVVEGDVVIP  100 (280)
Q Consensus        29 l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~----~~p~i~G~e~~G~V~~---vG-~~v~~~~~Gd~V~~  100 (280)
                      ...++.++|.|.+++++|++.++++|+.|+.+..|.....    .+|.+++.++.|++..   .| ..+.....||.+..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            5557889999999999999999999999999999987642    3565555555444322   23 11223444444421


Q ss_pred             cCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhc
Q 023561          101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC  180 (280)
Q Consensus       101 ~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa  180 (280)
                                                                       +...|+|+||+++|...++++|+++++.+||
T Consensus       100 -------------------------------------------------~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa  130 (347)
T KOG1198|consen  100 -------------------------------------------------FLSSGGLAEYVVVPEKLLVKIPESLSFEEAA  130 (347)
T ss_pred             -------------------------------------------------ccCCCceeeEEEcchhhccCCCCccChhhhh
Confidence                                                             1122499999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHc------CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          181 LLSCGVSTGVGAAWRTA------NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~------~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++.++.|||.++.+..      +.++|+.|||+|+ |++|.+++|+|+..++ ..+++..+++++++++++|+++++||
T Consensus       131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy  209 (347)
T KOG1198|consen  131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY  209 (347)
T ss_pred             cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence            99999999999999999      8999999999987 9999999999999996 45555568999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++   +++.+.+++.+++++|.|.
T Consensus       210 ~~---~~~~e~~kk~~~~~~DvVl  230 (347)
T KOG1198|consen  210 KD---ENVVELIKKYTGKGVDVVL  230 (347)
T ss_pred             CC---HHHHHHHHhhcCCCccEEE
Confidence            98   9999999998844775554

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.94  E-value=1.5e-25  Score=201.96  Aligned_cols=196  Identities=22%  Similarity=0.273  Sum_probs=171.6

Q ss_pred             cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCC
Q 023561           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCT  107 (280)
Q Consensus        29 l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~  107 (280)
                      +++++.+.|.+.++||+||+.++++|+.|..++.+.... ...|.++|||++|+|+.+|+++..+++||+|+..+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            567788888899999999999999999999988776532 345789999999999999999999999999975321    


Q ss_pred             CChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhhH
Q 023561          108 ECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS  187 (280)
Q Consensus       108 ~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~  187 (280)
                                                +                   |+|++|+.++...++++|+++++.+++.+.+...
T Consensus        90 --------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 --------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             --------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                      1                   2899999999999999999999999999888999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHH
Q 023561          188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLL  266 (280)
Q Consensus       188 ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~  266 (280)
                      ++|.++.....+.+|++|+|+|+ |.+|.+++++|+.+|+ .++++.+++++++.++++|+++++++++   .++.+.+.
T Consensus       125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~  200 (323)
T cd05282         125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP---EDLAQRVK  200 (323)
T ss_pred             HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc---hhHHHHHH
Confidence            99998877778899999999998 9999999999999999 7888888889999999999999999876   67888888


Q ss_pred             HhcCC-CceEEE
Q 023561          267 SIYDL-PLLTIS  277 (280)
Q Consensus       267 ~~~~g-g~~~v~  277 (280)
                      +++++ +++.+.
T Consensus       201 ~~~~~~~~d~vl  212 (323)
T cd05282         201 EATGGAGARLAL  212 (323)
T ss_pred             HHhcCCCceEEE
Confidence            88887 775554

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=1.6e-25  Score=200.91  Aligned_cols=197  Identities=23%  Similarity=0.368  Sum_probs=165.8

Q ss_pred             CCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhh-hcCCCC--CCCCcccccceeEEEEEeCCCCCCCCCCCEEEe
Q 023561           24 APGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP--AVFPRILGHEAIGVVESVGENVDGVVEGDVVIP  100 (280)
Q Consensus        24 ~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~-~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~  100 (280)
                      +.+. +++++++.|++.++||+||+.++++|+.|+..+ .+..+.  ...|.++|+|++|+|+.+|++++.+++||+|+.
T Consensus         3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   81 (312)
T cd08269           3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG   81 (312)
T ss_pred             CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence            4444 999999999999999999999999999999887 665432  124788999999999999999999999999975


Q ss_pred             cCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhc
Q 023561          101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC  180 (280)
Q Consensus       101 ~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa  180 (280)
                      ..                                                  .|+|++|+.++.+.++++|+++  ..++
T Consensus        82 ~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~~  109 (312)
T cd08269          82 LS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQA  109 (312)
T ss_pred             ec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhhH
Confidence            31                                                  1289999999999999999998  2333


Q ss_pred             ccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCcc
Q 023561          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  260 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~  260 (280)
                      ....++.+++.++. ..+++++++|+|+|+|.+|.+++++|+.+|++.++++.+++++.++++++|++++++.+.   .+
T Consensus       110 ~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~  185 (312)
T cd08269         110 FPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS---EA  185 (312)
T ss_pred             HhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC---cC
Confidence            32367888888654 788999999999988999999999999999954899998999999999999999998776   77


Q ss_pred             HHHHHHHhcCC-CceEEE
Q 023561          261 VSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       261 ~~~~v~~~~~g-g~~~v~  277 (280)
                      +.+.+.+++++ +++.+.
T Consensus       186 ~~~~l~~~~~~~~vd~vl  203 (312)
T cd08269         186 IVERVRELTGGAGADVVI  203 (312)
T ss_pred             HHHHHHHHcCCCCCCEEE
Confidence            88899998887 775554

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=3.9e-25  Score=198.67  Aligned_cols=212  Identities=24%  Similarity=0.264  Sum_probs=180.2

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++..++.+  +++++.+.|.+.++||+|++.++++|++|..+..+.... ...|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999888765  788888888899999999999999999999988776432 23577899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+....           +             .+ ...                   |+|++|+.++..+++++|++
T Consensus        81 ~Gd~V~~~~~-----------~-------------~~-~~~-------------------g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAG-----------G-------------LG-GLQ-------------------GSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccC-----------C-------------cC-CCC-------------------CceeEEEEecHHHcccCCCC
Confidence            9999975321           0             00 012                   38999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+++.+.++|.++.+..+++++++++|+|+ |.+|++++++++.+|+ .|+++.++ ++.+.++++|++.+++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~  194 (326)
T cd08272         117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIY  194 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEe
Confidence            9999999999899999998888899999999999997 9999999999999999 78888877 8999999999998888


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      ...   . +.+.+.+++++ +++.+..
T Consensus       195 ~~~---~-~~~~~~~~~~~~~~d~v~~  217 (326)
T cd08272         195 YRE---T-VVEYVAEHTGGRGFDVVFD  217 (326)
T ss_pred             cch---h-HHHHHHHhcCCCCCcEEEE
Confidence            776   5 78888888887 7765543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.94  E-value=3.4e-25  Score=203.02  Aligned_cols=212  Identities=19%  Similarity=0.246  Sum_probs=168.8

Q ss_pred             eeeeecCCCCCcEEEEeecCCC---CCCeEEEEeeeeecChhhhhhhhcCCCCCC-CCcccccceeEEEEEeCCCCC-CC
Q 023561           18 RAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGHEAIGVVESVGENVD-GV   92 (280)
Q Consensus        18 ~a~~~~~~g~~l~~~~~~~p~~---~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~-~p~i~G~e~~G~V~~vG~~v~-~~   92 (280)
                      ||+++.+++.++++++++.|.|   .++||+||+.++++|++|+..+.+...... .|.++|||++|+|+++|+++. .|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   81 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW   81 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence            6899999988888888887776   899999999999999999988754322212 377899999999999999998 89


Q ss_pred             CCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc----cEE
Q 023561           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA----HVV  168 (280)
Q Consensus        93 ~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~  168 (280)
                      ++||+|+......|                         ...                   |+|++|++++..    .++
T Consensus        82 ~~Gd~V~~~~~~~~-------------------------~~~-------------------g~~~~~~~v~~~~~~~~~~  117 (352)
T cd08247          82 KVGDEVCGIYPHPY-------------------------GGQ-------------------GTLSQYLLVDPKKDKKSIT  117 (352)
T ss_pred             CCCCEEEEeecCCC-------------------------CCC-------------------ceeeEEEEEccccccceeE
Confidence            99999975432111                         012                   389999999987    789


Q ss_pred             EcCCCCChhhhcccchhhHHHHHHHHHHc-CCCCCCEEEEECc-cHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHHc
Q 023561          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       169 ~iP~~ls~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~G~-g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~  245 (280)
                      ++|+++++.+++.+++.+.|+|.++.+.. .+++|++|+|+|+ |.+|.+++++|+.++. +.++++. ++++.+.++++
T Consensus       118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~  196 (352)
T cd08247         118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKL  196 (352)
T ss_pred             ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHh
Confidence            99999999999999999999999876666 7999999999998 8999999999999854 3567765 45556678889


Q ss_pred             CCcEEEcCCCCCCcc---HHHHHHHhcC-C-CceEEE
Q 023561          246 GVTEFVNSKNCGDKS---VSQVLLSIYD-L-PLLTIS  277 (280)
Q Consensus       246 Ga~~vi~~~~~~~~~---~~~~v~~~~~-g-g~~~v~  277 (280)
                      |+++++++++   .+   +...+.+.+. + +++.+.
T Consensus       197 g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~d~vl  230 (352)
T cd08247         197 GADHFIDYDA---HSGVKLLKPVLENVKGQGKFDLIL  230 (352)
T ss_pred             CCCEEEecCC---CcccchHHHHHHhhcCCCCceEEE
Confidence            9999998766   33   4455555443 5 665444

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.94  E-value=7.5e-25  Score=195.61  Aligned_cols=207  Identities=27%  Similarity=0.311  Sum_probs=177.4

Q ss_pred             eeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        18 ~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      ||+....++.+  +.+++.+.|.+.++||+||+.++++|++|+....+..+. .+|.++|||++|+|+.+|+++.++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            45666655543  667777777788999999999999999999988776543 457789999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|+...                              ..                   |+|++|+.++.+.++++|++++
T Consensus        80 ~~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~  110 (320)
T cd05286          80 DRVAYAG------------------------------PP-------------------GAYAEYRVVPASRLVKLPDGIS  110 (320)
T ss_pred             CEEEEec------------------------------CC-------------------CceeEEEEecHHHceeCCCCCC
Confidence            9997421                              01                   2899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ..+++.+.+...++|.++.+..++++|++|+|+|+ |++|.+++++++.+|+ .|+++..++++.++++++|++++++.+
T Consensus       111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  189 (320)
T cd05286         111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYR  189 (320)
T ss_pred             HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCC
Confidence            99999888899999998877888999999999997 9999999999999999 789998899999999999999999877


Q ss_pred             CCCCccHHHHHHHhcCC-CceEEEe
Q 023561          255 NCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +   .++.+.+++++++ +++.++.
T Consensus       190 ~---~~~~~~~~~~~~~~~~d~vl~  211 (320)
T cd05286         190 D---EDFVERVREITGGRGVDVVYD  211 (320)
T ss_pred             c---hhHHHHHHHHcCCCCeeEEEE
Confidence            6   7788888888877 7765553

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=2e-24  Score=193.92  Aligned_cols=213  Identities=28%  Similarity=0.321  Sum_probs=179.7

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++...+.+  +++++++.|.+.+++++|++.++++|+.|.....+.... ...|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            578888775542  777788888889999999999999999999887765432 23477899999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+..+.                         .++..+|                   ++++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~-------------------------~~~~~~g-------------------~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPA-------------------------ADLGQYG-------------------TYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEeccc-------------------------cccCCCc-------------------cceEEEEechHhcEeCCCC
Confidence            9999975432                         1111123                   8999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+.+++.++|.++.....+.++++++|+|+ |.+|.+++++++..|+ .++.++.++++.+.++++|++.+++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  195 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIV  195 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998877888999999999998 9999999999999999 7888888899999998899988888


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      .+.   .++.+.+.+.+.+ +++.+.
T Consensus       196 ~~~---~~~~~~~~~~~~~~~~d~vi  218 (328)
T cd08268         196 TDE---EDLVAEVLRITGGKGVDVVF  218 (328)
T ss_pred             cCC---ccHHHHHHHHhCCCCceEEE
Confidence            776   6777888888776 665554

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=7e-25  Score=196.31  Aligned_cols=181  Identities=24%  Similarity=0.280  Sum_probs=155.6

Q ss_pred             eeeeeecCCC-CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g-~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.+.+ ..+++++.+.|.+.++||+||+.++++|+.|.......    ..|.++|||++|+|+++|+++..|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G   76 (305)
T cd08270           1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG   76 (305)
T ss_pred             CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence            5788888755 12777799999999999999999999999999876522    236789999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|+...                              .+                   |+|++|+.++.++++++|++++
T Consensus        77 d~V~~~~------------------------------~~-------------------g~~~~~~~v~~~~~~~ip~~~~  107 (305)
T cd08270          77 ARVVGLG------------------------------AM-------------------GAWAELVAVPTGWLAVLPDGVS  107 (305)
T ss_pred             CEEEEec------------------------------CC-------------------cceeeEEEEchHHeEECCCCCC
Confidence            9996421                              12                   3899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++++.+++.+.|||+++...... +|++|+|+|+ |++|.+++++++..|+ +++.+++++++++.++++|++.+++
T Consensus       108 ~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  183 (305)
T cd08270         108 FAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVV  183 (305)
T ss_pred             HHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence            999999999999999976555444 5999999998 9999999999999999 7999988999999999999876553

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.5e-24  Score=196.31  Aligned_cols=204  Identities=25%  Similarity=0.300  Sum_probs=169.6

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      .||+++...+.+  +++++.+.|.|.++||+|++.++++|++|+.++.+..+. ..+|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence            478888887754  888899999999999999999999999999988876543 24678999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|.....                              .                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~  111 (331)
T cd08273          81 VGDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEG  111 (331)
T ss_pred             CCCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCC
Confidence            9999974311                              1                   28999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+.+++.++|.++.+...+.+|++|+|+|+ |.+|.+++++++.+|+ .|+++.. +++.+.++++|+.. ++
T Consensus       112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~  188 (331)
T cd08273         112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-ID  188 (331)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-Ec
Confidence            9999999999999999998777788999999999998 9999999999999999 7888887 88999999999764 44


Q ss_pred             CCCCCCccHHHHHHHhcCCCceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      .+.   .++.+.  +..+++++.+.
T Consensus       189 ~~~---~~~~~~--~~~~~~~d~vl  208 (331)
T cd08273         189 YRT---KDWLPA--MLTPGGVDVVF  208 (331)
T ss_pred             CCC---cchhhh--hccCCCceEEE
Confidence            443   333333  33334554443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.93  E-value=4.7e-24  Score=193.05  Aligned_cols=203  Identities=20%  Similarity=0.177  Sum_probs=167.3

Q ss_pred             eeeeeecCCC------CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC---CCCCcccccceeEEEEEeCC
Q 023561           17 CRAAIATAPG------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGE   87 (280)
Q Consensus        17 ~~a~~~~~~g------~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~   87 (280)
                      +|||++.+.+      +.+++++++.|++.++||+||+.++++|+.|...+.+....   ...+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            5778776533      12889999999999999999999999999887655543211   12346789999999999996


Q ss_pred             CCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec-cc
Q 023561           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AH  166 (280)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~  166 (280)
                      +  .+++||+|+..                                                    ++|++|+.++. ..
T Consensus        82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~  107 (329)
T cd05288          82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG  107 (329)
T ss_pred             C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence            4  79999999631                                                    16999999999 99


Q ss_pred             EEEcCCCCC--hhhhcc-cchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          167 VVKVDPTVP--PNRACL-LSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       167 ~~~iP~~ls--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++|++++  +.+++. +.+++.|+|+++.+...+.++++|+|+|+ |.+|.+++++++..|+ .|+++++++++.+.+
T Consensus       108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~  186 (329)
T cd05288         108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL  186 (329)
T ss_pred             cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999995  445544 78899999998877788899999999996 9999999999999999 789999899999999


Q ss_pred             HH-cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          243 KR-FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       243 ~~-~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++ +|+++++++++   .++.+.+.++++++++.+.
T Consensus       187 ~~~~g~~~~~~~~~---~~~~~~v~~~~~~~~d~vi  219 (329)
T cd05288         187 VEELGFDAAINYKT---PDLAEALKEAAPDGIDVYF  219 (329)
T ss_pred             HhhcCCceEEecCC---hhHHHHHHHhccCCceEEE
Confidence            88 99999999876   6788888888755665444

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.93  E-value=9.4e-24  Score=189.35  Aligned_cols=208  Identities=25%  Similarity=0.293  Sum_probs=177.0

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+.+...+.+  +++++.+.|.+.+++++||+.++++|+.|.....+..+. ..+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            578888776654  667777777789999999999999999999888765432 23578999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+...                              .+                   |+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALV------------------------------AG-------------------GGYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEcc------------------------------CC-------------------CcceeEEEecHHHcEeCCCC
Confidence            999996421                              11                   28999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++.+++.+.+++.++|.++.+...++++++++|+|+ |++|.+++++++.+|+ +++++.+++++.+.++++|++.+++
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  190 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAIN  190 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence            9999999999999999998788889999999999997 9999999999999999 7888888999999998899988888


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ...   .++.+.+++..++ +++.++
T Consensus       191 ~~~---~~~~~~~~~~~~~~~~d~~i  213 (325)
T TIGR02824       191 YRE---EDFVEVVKAETGGKGVDVIL  213 (325)
T ss_pred             cCc---hhHHHHHHHHcCCCCeEEEE
Confidence            766   6788888888776 665444

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08251 polyketide_synthase polyketide synthase

Probab=99.93  E-value=9.5e-24  Score=187.72  Aligned_cols=190  Identities=25%  Similarity=0.313  Sum_probs=165.7

Q ss_pred             cCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcC
Q 023561           36 VDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRS  114 (280)
Q Consensus        36 ~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~  114 (280)
                      .|.+.+++++||+.++++|+.|+....+.++. ..+|.++|+|++|+|+++|+++.++++||+|+....           
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-----------   70 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-----------   70 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-----------
Confidence            57889999999999999999999988876542 346889999999999999999999999999975421           


Q ss_pred             CCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHH
Q 023561          115 KKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW  194 (280)
Q Consensus       115 g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~  194 (280)
                                       ...                   |+|++|+.++.+.++++|++++..+++.++.++.++|.++ 
T Consensus        71 -----------------~~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-  113 (303)
T cd08251          71 -----------------ESM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-  113 (303)
T ss_pred             -----------------CCC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence                             011                   3899999999999999999999999999999999999975 


Q ss_pred             HHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-C
Q 023561          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-P  272 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g  272 (280)
                      +...+++|++|+|+|+ |.+|.+++++++.+|+ +++++.+++++.+.++++|++.+++...   .++.+.+.+++++ +
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~  189 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE---EDFEEEIMRLTGGRG  189 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHcCCCC
Confidence            6788999999999976 9999999999999999 7999998999999999999999998876   7788888888887 6


Q ss_pred             ceEEE
Q 023561          273 LLTIS  277 (280)
Q Consensus       273 ~~~v~  277 (280)
                      ++.+.
T Consensus       190 ~d~v~  194 (303)
T cd08251         190 VDVVI  194 (303)
T ss_pred             ceEEE
Confidence            65443

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.92  E-value=2.6e-23  Score=185.17  Aligned_cols=191  Identities=25%  Similarity=0.349  Sum_probs=162.2

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC---CCCCCcccccceeEEEEEeCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      |||+++..++..  +++++.+.|.++++||+||+.++++|++|+..+.+...   ....|.++|||++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            678888877753  56778888888999999999999999999998877642   2345889999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      +++||+|+..+..                           ..+                   |+|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence            9999999754210                           012                   389999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      +++++.+++.+.+...+++.++.+...+.++++|+|+|+ |.+|++++++++..|+ .++++..++ +.+.++++|++++
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~  192 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEV  192 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEE
Confidence            999999999988899999998776667899999999997 9999999999999999 677777666 8888888999888


Q ss_pred             EcCCC
Q 023561          251 VNSKN  255 (280)
Q Consensus       251 i~~~~  255 (280)
                      ++.+.
T Consensus       193 ~~~~~  197 (309)
T cd05289         193 IDYTK  197 (309)
T ss_pred             EeCCC
Confidence            87765

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.92  E-value=5.8e-23  Score=183.89  Aligned_cols=207  Identities=27%  Similarity=0.407  Sum_probs=175.3

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCC-CCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV   92 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~-~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~   92 (280)
                      |+|+++..++.+  +++.+.+ |.+. ++|++||+.++++|++|+..+.+.... ...|.++|||++|+|+.+|+++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            578888754433  7777777 7666 499999999999999999988776532 2346689999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        93 ~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      ++||+|+..+                              ..                   |+|++|+.++.+.++++|+
T Consensus        80 ~~G~~V~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALT------------------------------GQ-------------------GGFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEec------------------------------CC-------------------ceeEEEEEcCHHHceeCCC
Confidence            9999997532                              01                   2899999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      +++..+++.+..+..++|.++.+..++.++++|+|+|+ |.+|.+++++++..|+ .|++++.++++.+.++++|++.++
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  189 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVI  189 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceee
Confidence            99999998888899999998777788999999999998 9999999999999999 789998899999999999998888


Q ss_pred             cCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          252 NSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +...   .++.+.+.+.+++ +++.+.
T Consensus       190 ~~~~---~~~~~~i~~~~~~~~~d~v~  213 (323)
T cd08241         190 DYRD---PDLRERVKALTGGRGVDVVY  213 (323)
T ss_pred             ecCC---ccHHHHHHHHcCCCCcEEEE
Confidence            8776   7788888888877 665554

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=180.91  Aligned_cols=193  Identities=23%  Similarity=0.255  Sum_probs=159.9

Q ss_pred             CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEe--CCCCCCCCCCCEEEecCCCC
Q 023561           28 PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESV--GENVDGVVEGDVVIPHFLAD  105 (280)
Q Consensus        28 ~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~v--G~~v~~~~~Gd~V~~~~~~~  105 (280)
                      +|+++++++|+|+++|||||+++.++.+.....++-.. .--.|+-+|....|.++..  -|+.+.|++||.|+...   
T Consensus        26 ~F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~-SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~---  101 (340)
T COG2130          26 DFRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAP-SYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS---  101 (340)
T ss_pred             CceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCc-ccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc---
Confidence            39999999999999999999999999985544333222 2223566666655554443  26678899999996321   


Q ss_pred             CCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhh--cccc
Q 023561          106 CTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLS  183 (280)
Q Consensus       106 c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~a--a~l~  183 (280)
                                                                       +|++|.+++.+.+.++++..-+..+  ..+.
T Consensus       102 -------------------------------------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLG  132 (340)
T COG2130         102 -------------------------------------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLG  132 (340)
T ss_pred             -------------------------------------------------cceEEEeechhhceecCCCCCCcchHHhhcC
Confidence                                                             7999999999999999865433333  3466


Q ss_pred             hhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcEEEcCCCCCCccH
Q 023561          184 CGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSV  261 (280)
Q Consensus       184 ~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~~~~  261 (280)
                      .+..|||.++++....++|++|+|-++ |++|..+.|+||..|+ +||.+..+++|.+++++ +|.|.+|||+.   +++
T Consensus       133 mpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~---~d~  208 (340)
T COG2130         133 MPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA---EDF  208 (340)
T ss_pred             CchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc---ccH
Confidence            799999999999999999999999998 9999999999999999 99999999999999998 99999999999   899


Q ss_pred             HHHHHHhcCCCceEEE
Q 023561          262 SQVLLSIYDLPLLTIS  277 (280)
Q Consensus       262 ~~~v~~~~~gg~~~v~  277 (280)
                      .+.+++.++.|+|..+
T Consensus       209 ~~~L~~a~P~GIDvyf  224 (340)
T COG2130         209 AQALKEACPKGIDVYF  224 (340)
T ss_pred             HHHHHHHCCCCeEEEE
Confidence            9999999999987654

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=5.6e-23  Score=184.41  Aligned_cols=194  Identities=23%  Similarity=0.253  Sum_probs=161.4

Q ss_pred             EEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC---CCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCC
Q 023561           30 VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADC  106 (280)
Q Consensus        30 ~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c  106 (280)
                      ++++.+.|.|.++||+|+++++++|++|...+.+..+.   ...|.++|||++|+|.++|+++..+++||+|+.....  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            77888999999999999999999999999988776521   2346789999999999999999999999999754221  


Q ss_pred             CCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhh
Q 023561          107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV  186 (280)
Q Consensus       107 ~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~  186 (280)
                                               ...                   |+|++|+.++.+.++++|+++++.+++.+.+++
T Consensus        93 -------------------------~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          93 -------------------------KGG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             -------------------------CCC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                     011                   289999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHH
Q 023561          187 STGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVL  265 (280)
Q Consensus       187 ~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v  265 (280)
                      .++|+++.....+++|++|+|+|+ |++|++++++|+.+|+ +|+++..+ ++.+.++++|++++++.+.   .++.   
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~---  200 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT---EDFV---  200 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC---CCcc---
Confidence            999998777777999999999998 9999999999999999 78888755 8888889999988888765   3332   


Q ss_pred             HHhcCC-CceEEE
Q 023561          266 LSIYDL-PLLTIS  277 (280)
Q Consensus       266 ~~~~~g-g~~~v~  277 (280)
                      ++.+.+ ++|.+.
T Consensus       201 ~~~~~~~~~d~vi  213 (319)
T cd08267         201 ALTAGGEKYDVIF  213 (319)
T ss_pred             hhccCCCCCcEEE
Confidence            344555 554443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=1.6e-22  Score=182.77  Aligned_cols=206  Identities=23%  Similarity=0.280  Sum_probs=169.6

Q ss_pred             eeeeecCCCC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           18 RAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        18 ~a~~~~~~g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      ||+++...+.  .+++++.+.|.|.++||+||+.++++|++|..++.+.... ...|.++|||++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4566665553  3778888888889999999999999999999988876532 245778999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|+....                              +                   |+|++|+.++...++++|+++
T Consensus        81 G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLTR------------------------------F-------------------GGYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEecC------------------------------C-------------------CeeeeEEEecHHHeEECCCCC
Confidence            999974311                              1                   289999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      ++.+++.+.+++.++|.++.+..++++|++|+|+|+ |.+|.+++++++.+ +. .++.. ..+++.+.++++|++.+++
T Consensus       112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~  189 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVID  189 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEee
Confidence            999999999999999998888889999999999998 99999999999998 33 22222 2456888888899998988


Q ss_pred             CCCCCCccHHHHHHHhcCCCceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      .+.   .++.+.+++.++++++.+.
T Consensus       190 ~~~---~~~~~~~~~~~~~~~d~v~  211 (337)
T cd08275         190 YRT---QDYVEEVKKISPEGVDIVL  211 (337)
T ss_pred             CCC---CcHHHHHHHHhCCCceEEE
Confidence            876   7788888888755665444

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.91  E-value=1.2e-22  Score=178.83  Aligned_cols=180  Identities=25%  Similarity=0.242  Sum_probs=158.4

Q ss_pred             CeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCC
Q 023561           42 HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS  121 (280)
Q Consensus        42 ~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~  121 (280)
                      +||+||+.++++|++|+....+..+  ..|.++|||++|+|+++|+++..+++||+|....                   
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence            5899999999999999999887653  4578999999999999999999999999997431                   


Q ss_pred             CCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCC
Q 023561          122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV  201 (280)
Q Consensus       122 ~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~  201 (280)
                                  +                   |+|++|+.++...++++|+++++.+++.+.++..++|.++.+...+++
T Consensus        60 ------------~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  108 (293)
T cd05195          60 ------------P-------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK  108 (293)
T ss_pred             ------------c-------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence                        1                   289999999999999999999999999998999999998878789999


Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC--CcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G--a~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      |++|+|+|+ |.+|++++++++.+|+ +++++..++++.+.++++|  ++.+++...   .++.+.+++++++ +++.+.
T Consensus       109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi  184 (293)
T cd05195         109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD---LSFADGILRATGGRGVDVVL  184 (293)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc---hhHHHHHHHHhCCCCceEEE
Confidence            999999986 9999999999999999 7899988889999999888  788888766   6788888888877 665544

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.89  E-value=2e-23  Score=160.35  Aligned_cols=108  Identities=35%  Similarity=0.541  Sum_probs=95.9

Q ss_pred             CCeEEEEeeeeecChhhhhhhhcC-CCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCC
Q 023561           41 SHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL  119 (280)
Q Consensus        41 ~~eVlIkv~~~~i~~~D~~~~~g~-~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~  119 (280)
                      |+|||||++++|||++|++++.+. .....+|.++|||++|+|+++|+++++|++||+|++.+...|+.|.+|..+..++
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            689999999999999999999994 4446789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561          120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus       120 c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      |++...   +|...+|                   +|+||++++.++++|+
T Consensus        81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence            988665   6766777                   9999999999999985

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>smart00829 PKS_ER Enoylreductase

Probab=99.89  E-value=8.3e-22  Score=173.37  Aligned_cols=175  Identities=24%  Similarity=0.250  Sum_probs=154.2

Q ss_pred             EEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCC
Q 023561           46 VRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF  125 (280)
Q Consensus        46 Ikv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~  125 (280)
                      ||+.++++|++|+....+.++   .|.++|||++|+|+++|+++..|++||+|+...                       
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~-----------------------   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA-----------------------   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence            799999999999999887654   367899999999999999999999999997431                       


Q ss_pred             CcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEE
Q 023561          126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV  205 (280)
Q Consensus       126 ~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V  205 (280)
                                                 .|+|++|+.++.+.++++|+++++.+++.+.+.+.++|.++.+...+.+|++|
T Consensus        56 ---------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v  108 (288)
T smart00829       56 ---------------------------PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV  108 (288)
T ss_pred             ---------------------------CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence                                       13899999999999999999999999999999999999987788889999999


Q ss_pred             EEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC--cEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          206 VIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       206 lI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga--~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +|+|+ |.+|++++++++..|+ +|+++++++++++.++++|+  +.++++.+   .++.+.+.+++++ +++.+.
T Consensus       109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi  180 (288)
T smart00829      109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD---LSFADEILRATGGRGVDVVL  180 (288)
T ss_pred             EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC---ccHHHHHHHHhCCCCcEEEE
Confidence            99996 9999999999999999 79999989999999999998  78888776   6788888888877 664443

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.77  E-value=9.2e-18  Score=148.53  Aligned_cols=131  Identities=29%  Similarity=0.444  Sum_probs=116.3

Q ss_pred             CCCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceee
Q 023561           69 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH  148 (280)
Q Consensus        69 ~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~  148 (280)
                      .+|.++|||++|+|+++|+++++|++||+|+...                                              
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~----------------------------------------------   52 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG----------------------------------------------   52 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC----------------------------------------------
Confidence            4789999999999999999999999999997421                                              


Q ss_pred             cccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCe
Q 023561          149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR  228 (280)
Q Consensus       149 ~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~  228 (280)
                            .|++|+.++.+.++++|+++++.+++.+ +++.++|+++ ...++++|++++|+|+|.+|++++++|+.+|++.
T Consensus        53 ------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~  124 (277)
T cd08255          53 ------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE  124 (277)
T ss_pred             ------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence                  5899999999999999999999999888 7899999975 5788999999999988999999999999999944


Q ss_pred             EEEEcCChhHHHHHHHcC-CcEEEcC
Q 023561          229 IIGVDVISEKFEIGKRFG-VTEFVNS  253 (280)
Q Consensus       229 vi~~~~~~~~~~~~~~~G-a~~vi~~  253 (280)
                      |+++++++++.++++++| ++++++.
T Consensus       125 vi~~~~~~~~~~~~~~~g~~~~~~~~  150 (277)
T cd08255         125 VVGVDPDAARRELAEALGPADPVAAD  150 (277)
T ss_pred             EEEECCCHHHHHHHHHcCCCcccccc
Confidence            999999999999999998 4555543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.76  E-value=2.3e-16  Score=137.43  Aligned_cols=204  Identities=22%  Similarity=0.211  Sum_probs=152.0

Q ss_pred             eeeeeeecCC--CC----CcEEE--Eeec-CCCCCCeEEEEeeeeecChhhhhhhhcCCCCC-CCCccccc----ceeEE
Q 023561           16 QCRAAIATAP--GE----PLVID--EVIV-DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA-VFPRILGH----EAIGV   81 (280)
Q Consensus        16 ~~~a~~~~~~--g~----~l~~~--~~~~-p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~-~~p~i~G~----e~~G~   81 (280)
                      +.|.+++.++  |-    ++.++  +.++ .++++++||||.++.+..+.....+.-..+.. -.|+.+|.    .++|+
T Consensus         3 ~nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~k   82 (343)
T KOG1196|consen    3 TNKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAK   82 (343)
T ss_pred             cccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEE
Confidence            4556666542  22    24443  3343 34589999999999999887765554333221 11232322    67999


Q ss_pred             EEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEE
Q 023561           82 VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV  161 (280)
Q Consensus        82 V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~  161 (280)
                      |++.  +.+++++||.|....                                                    +|.||.+
T Consensus        83 Vi~S--~~~~~~~GD~v~g~~----------------------------------------------------gWeeysi  108 (343)
T KOG1196|consen   83 VIDS--GHPNYKKGDLVWGIV----------------------------------------------------GWEEYSV  108 (343)
T ss_pred             EEec--CCCCCCcCceEEEec----------------------------------------------------cceEEEE
Confidence            9995  557899999994211                                                    6999999


Q ss_pred             eecc--cEEEcCC--CCChhhh-cccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          162 LDIA--HVVKVDP--TVPPNRA-CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       162 ~~~~--~~~~iP~--~ls~~~a-a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +...  ..++++.  ++++.-. .++..+..|||...++....++|++|+|-|| |.+|.++.|+|+.+|+ .||.+..+
T Consensus       109 i~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS  187 (343)
T KOG1196|consen  109 ITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGS  187 (343)
T ss_pred             ecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCC
Confidence            9764  4455554  4444333 2466789999999999999999999999998 9999999999999999 99999999


Q ss_pred             hhHHHHHHH-cCCcEEEcCCCCCCccHHHHHHHhcCCCceEE
Q 023561          236 SEKFEIGKR-FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTI  276 (280)
Q Consensus       236 ~~~~~~~~~-~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v  276 (280)
                      ++|..+++. +|.+..+||.+  +.+..+.++++.+.|+|..
T Consensus       188 ~EKv~ll~~~~G~d~afNYK~--e~~~~~aL~r~~P~GIDiY  227 (343)
T KOG1196|consen  188 KEKVDLLKTKFGFDDAFNYKE--ESDLSAALKRCFPEGIDIY  227 (343)
T ss_pred             hhhhhhhHhccCCccceeccC--ccCHHHHHHHhCCCcceEE
Confidence            999999986 89999999998  3488889999888888654

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.65  E-value=4.1e-16  Score=154.07  Aligned_cols=188  Identities=20%  Similarity=0.113  Sum_probs=157.3

Q ss_pred             cEEEEeecC--C-CCCCeEEEEeeeeecChhhhhhhhcCCCCCCC-------CcccccceeEEEEEeCCCCCCCCCCCEE
Q 023561           29 LVIDEVIVD--P-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF-------PRILGHEAIGVVESVGENVDGVVEGDVV   98 (280)
Q Consensus        29 l~~~~~~~p--~-~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~-------p~i~G~e~~G~V~~vG~~v~~~~~Gd~V   98 (280)
                      ++..+-|..  . ..++.=+--|-|+.+|+.|+...+|+.+....       ..++|-|++|+-          +-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCcEE
Confidence            455554443  2 24566677899999999999999999876433       368999999873          449999


Q ss_pred             EecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhh
Q 023561           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR  178 (280)
Q Consensus        99 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~  178 (280)
                      .                              |+-+.-                   ++++-+.++.+++|.+|.+-..++
T Consensus      1499 M------------------------------~mvpAk-------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 M------------------------------GMVPAK-------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred             E------------------------------Eeeehh-------------------hhhhhhhcchhhhhhCCcccchhh
Confidence            4                              333222                   789999999999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH----cCCcEEEcC
Q 023561          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNS  253 (280)
Q Consensus       179 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~----~Ga~~vi~~  253 (280)
                      |++.+|.++|+|+|+..+...++|+++|||++ |++|.+||..|.+.|+ +|+.+..+.+|++++.+    +-.+.+-|.
T Consensus      1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NS 1608 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANS 1608 (2376)
T ss_pred             cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccc
Confidence            99999999999999999999999999999976 9999999999999999 89999999999999975    445677788


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEEec
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTISVS  279 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~~~  279 (280)
                      ++   .+|..-++..|.| |++.|.++
T Consensus      1609 Rd---tsFEq~vl~~T~GrGVdlVLNS 1632 (2376)
T KOG1202|consen 1609 RD---TSFEQHVLWHTKGRGVDLVLNS 1632 (2376)
T ss_pred             cc---ccHHHHHHHHhcCCCeeeehhh
Confidence            77   8999999999999 98888765

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=98.79  E-value=3.3e-08  Score=77.46  Aligned_cols=63  Identities=19%  Similarity=0.318  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          212 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       212 ~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      ++|++++|+|+.+|+ +|++++++++|+++++++|+++++++++   .++.+.+++++++ +++.++.
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~---~~~~~~i~~~~~~~~~d~vid   64 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD---DDFVEQIRELTGGRGVDVVID   64 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT---SSHHHHHHHHTTTSSEEEEEE
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc---cccccccccccccccceEEEE
Confidence            589999999999996 9999999999999999999999999998   8899999999998 7765543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.19  E-value=6.2e-06  Score=79.13  Aligned_cols=55  Identities=24%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE-EcCC
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSK  254 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~  254 (280)
                      ..++++|+|+|+|.+|+++++.|+.+|+ +|+++|.+++|++.++++|++.+ +|..
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~  217 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFE  217 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccc
Confidence            4579999999999999999999999999 89999999999999999999854 6654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.51  E-value=0.00041  Score=65.11  Aligned_cols=58  Identities=24%  Similarity=0.278  Sum_probs=49.8

Q ss_pred             HHHHHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       190 ~~~l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +.++.+..+ ..+|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|++.++.+|++
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~  247 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYE  247 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCE
Confidence            344555544 3689999999999999999999999999 899999999999999988874

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.51  E-value=3.7e-06  Score=79.25  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=86.7

Q ss_pred             cccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeeccc
Q 023561           72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFV  151 (280)
Q Consensus        72 ~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~  151 (280)
                      ..-|.|+++.+.+|++++++.-+|+     +.+ |+.|..|    ++.|.+...   .|...++                
T Consensus        88 ~~~~~~a~~hl~~Va~GldS~V~GE-----~qI-~gQvk~a----~~~a~~~~~---~g~~l~~----------------  138 (417)
T TIGR01035        88 ILTGESAVEHLFRVASGLDSMVVGE-----TQI-LGQVKNA----YKVAQEEKT---VGKVLER----------------  138 (417)
T ss_pred             hcCchHHHHHHHHHHhhhhhhhcCC-----hHH-HHHHHHH----HHHHHHcCC---chHHHHH----------------
Confidence            3568999999999999987744444     444 7878877    333433322   3333333                


Q ss_pred             ccceeeeeEEeecccEEE---c-CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCC
Q 023561          152 SVSSFSEYTVLDIAHVVK---V-DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  227 (280)
Q Consensus       152 ~~g~~~~~~~~~~~~~~~---i-P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~  227 (280)
                         .|++++.++. .+..   + +..+|...+|         ...+.+.....++++|+|+|+|.+|..+++.++..|+.
T Consensus       139 ---lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A---------v~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~  205 (417)
T TIGR01035       139 ---LFQKAFSVGK-RVRTETDISAGAVSISSAA---------VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVG  205 (417)
T ss_pred             ---HHHHHHHHhh-hhhhhcCCCCCCcCHHHHH---------HHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCC
Confidence               7888877765 2222   2 2222222221         11122334456789999999999999999999999976


Q ss_pred             eEEEEcCChhHHH-HHHHcCC
Q 023561          228 RIIGVDVISEKFE-IGKRFGV  247 (280)
Q Consensus       228 ~vi~~~~~~~~~~-~~~~~Ga  247 (280)
                      +|++++++.++.+ +++++|.
T Consensus       206 ~V~v~~rs~~ra~~la~~~g~  226 (417)
T TIGR01035       206 KILIANRTYERAEDLAKELGG  226 (417)
T ss_pred             EEEEEeCCHHHHHHHHHHcCC
Confidence            8999999988754 5555654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.27  E-value=0.00037  Score=63.19  Aligned_cols=82  Identities=22%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             ccEEEcCCCCChhhhcccchhhHHHHHHHHHHcC---CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHH-H
Q 023561          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF-E  240 (280)
Q Consensus       165 ~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~-~  240 (280)
                      +..+++|+.++.+.++... +.++++.++.....   ..++++|+|+|+|.+|..+++.++..|...|++++++.+|. +
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4567889999888887755 66677665433222   24789999999999999999999988877899999998765 6


Q ss_pred             HHHHcCC
Q 023561          241 IGKRFGV  247 (280)
Q Consensus       241 ~~~~~Ga  247 (280)
                      +++++|+
T Consensus       218 la~~~g~  224 (311)
T cd05213         218 LAKELGG  224 (311)
T ss_pred             HHHHcCC
Confidence            6667776

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.05  E-value=0.0018  Score=62.30  Aligned_cols=50  Identities=26%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      .++++|+|+|+|.+|++++++++.+|+ .|++++++.++++.++++|++.+
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v  211 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFL  211 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE
Confidence            457899999999999999999999999 79999999999999999999753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.92  E-value=0.0046  Score=54.22  Aligned_cols=83  Identities=22%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             eeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       155 ~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      +|.+|.. +...++.+++++++..+.--. +.. ....+.  ....++++||-+|.|. |.+++.+++ .|...|+++|.
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi  150 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI  150 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence            3666544 667789999998888764211 111 111111  1256889999999876 887776554 67767999999


Q ss_pred             ChhHHHHHHH
Q 023561          235 ISEKFEIGKR  244 (280)
Q Consensus       235 ~~~~~~~~~~  244 (280)
                      ++...+.+++
T Consensus       151 s~~~l~~A~~  160 (250)
T PRK00517        151 DPQAVEAARE  160 (250)
T ss_pred             CHHHHHHHHH
Confidence            9987776654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.82  E-value=0.0082  Score=56.62  Aligned_cols=58  Identities=29%  Similarity=0.284  Sum_probs=45.6

Q ss_pred             HHHHHHHHcCCC-CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          189 GVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       189 a~~~l~~~~~~~-~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|.++.+..++. .|++|+|+|.|.+|..+++.++.+|+ +|+++++++.|...+...|+
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~  256 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGF  256 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCC
Confidence            445444443544 89999999999999999999999999 89999998877655544443

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.69  E-value=0.0046  Score=60.64  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC---------------------hhHHHHHHHcCCcEEEcCC
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---------------------SEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~---------------------~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ....|++|+|+|+|++|+.+++.++..|+ +|++++..                     +.+++.++++|++..++..
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~  209 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVR  209 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCE
Confidence            35789999999999999999999999999 68888742                     3567788899998777643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.69  E-value=0.0067  Score=48.06  Aligned_cols=48  Identities=31%  Similarity=0.351  Sum_probs=41.5

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cC
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG  246 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G  246 (280)
                      --++++++|+|+|++|.+++..+...|+++++++.|+.+|.+.+.+ ++
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~   57 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG   57 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC
Confidence            3568999999999999999999999999889999999988776654 53

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.59  E-value=0.0043  Score=58.68  Aligned_cols=135  Identities=21%  Similarity=0.189  Sum_probs=81.5

Q ss_pred             cccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeeccc
Q 023561           72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFV  151 (280)
Q Consensus        72 ~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~  151 (280)
                      ..-|||+++-+.+|++++++.-+|..-+      |+.|+.+   + ..|.+...   .|...++                
T Consensus        90 ~~~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk~a---~-~~a~~~g~---~g~~l~~----------------  140 (423)
T PRK00045         90 VHEGEEAVRHLFRVASGLDSMVLGEPQI------LGQVKDA---Y-ALAQEAGT---VGTILNR----------------  140 (423)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhcCChHH------HHHHHHH---H-HHHHHcCC---chHHHHH----------------
Confidence            4569999999999999988755565433      3333321   1 01111100   1111111                


Q ss_pred             ccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcC---CCCCCEEEEECccHHHHHHHHHHHHcCCCe
Q 023561          152 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGLGSIGLAVAEGARLCGATR  228 (280)
Q Consensus       152 ~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~VlI~G~g~~G~~a~~la~~~g~~~  228 (280)
                         .|++.        +++|+.+..+.+.. ..+.++++.++.....   ..++++|+|+|+|.+|.++++.++..|++.
T Consensus       141 ---lf~~a--------~~~~k~v~~~t~i~-~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~  208 (423)
T PRK00045        141 ---LFQKA--------FSVAKRVRTETGIG-AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRK  208 (423)
T ss_pred             ---HHHHH--------HHHHhhHhhhcCCC-CCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCe
Confidence               44443        33344443333322 2245555555432222   367899999999999999999999999888


Q ss_pred             EEEEcCChhHHH-HHHHcCC
Q 023561          229 IIGVDVISEKFE-IGKRFGV  247 (280)
Q Consensus       229 vi~~~~~~~~~~-~~~~~Ga  247 (280)
                      |++++++.++.+ +++++|.
T Consensus       209 V~v~~r~~~ra~~la~~~g~  228 (423)
T PRK00045        209 ITVANRTLERAEELAEEFGG  228 (423)
T ss_pred             EEEEeCCHHHHHHHHHHcCC
Confidence            999999988855 5666764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.47  E-value=0.012  Score=55.08  Aligned_cols=56  Identities=32%  Similarity=0.334  Sum_probs=45.5

Q ss_pred             HHHHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          191 GAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       191 ~~l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .++.+..+ ...|++|+|+|.|.+|+.+++.++.+|+ +|++++.++.|...++..|+
T Consensus       183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~  239 (406)
T TIGR00936       183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGF  239 (406)
T ss_pred             HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCC
Confidence            33444444 4689999999999999999999999999 79999988887766666665

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.44  E-value=0.025  Score=50.91  Aligned_cols=46  Identities=24%  Similarity=0.389  Sum_probs=41.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+++++|+|.|.+|..+++.++.+|+ +|++++++.++.+.++++|+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~  196 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGL  196 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            68999999999999999999999999 89999999888777776664

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.43  E-value=0.016  Score=50.22  Aligned_cols=74  Identities=18%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC----cEEEcCCCCCCccHHHHHHHhcCC-C-
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV----TEFVNSKNCGDKSVSQVLLSIYDL-P-  272 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga----~~vi~~~~~~~~~~~~~v~~~~~g-g-  272 (280)
                      +++.++|.|+ +++|.+.++.+...|+ +|+.+.|..+|++.+.. ++.    ...+|..+  .+.....+..+... | 
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD--~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD--RAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC--HHHHHHHHHHHHHhhCc
Confidence            4588999999 9999999999999999 99999999999988875 773    23344443  23444445444444 4 


Q ss_pred             ceEEE
Q 023561          273 LLTIS  277 (280)
Q Consensus       273 ~~~v~  277 (280)
                      +|.++
T Consensus        82 iDiLv   86 (246)
T COG4221          82 IDILV   86 (246)
T ss_pred             ccEEE
Confidence            44443

>PRK08017 oxidoreductase; Provisional

Probab=96.34  E-value=0.016  Score=50.14  Aligned_cols=47  Identities=23%  Similarity=0.308  Sum_probs=40.8

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      ++++|+|+ |++|...++.+...|. +|++++++.++.+.+++.+++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~   50 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGI   50 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEE
Confidence            57999998 9999999999999999 89999999998888887776543

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.04  Score=48.62  Aligned_cols=48  Identities=19%  Similarity=0.204  Sum_probs=40.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++++.+.+.+++.
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~   51 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEA   51 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceE
Confidence            4678999998 9999999988888999 8999999988888777766543

>PLN02494 adenosylhomocysteinase

Probab=96.13  E-value=0.024  Score=54.00  Aligned_cols=57  Identities=25%  Similarity=0.298  Sum_probs=45.2

Q ss_pred             HHHHHHHcCC-CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          190 VGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       190 ~~~l~~~~~~-~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +.++.+..++ -.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~  298 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGY  298 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCC
Confidence            4445555454 679999999999999999999999999 89999988877555554444

>PRK08324 short chain dehydrogenase; Validated

Probab=95.99  E-value=0.03  Score=56.19  Aligned_cols=78  Identities=21%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             eeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc
Q 023561          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       155 ~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      ++++|..++...+|.+ +..+.+++.....          ......+|+++||+|+ |++|...++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            5677777777777766 5555555532100          0122346899999997 9999999999999999 899999


Q ss_pred             CChhHHHHHHH
Q 023561          234 VISEKFEIGKR  244 (280)
Q Consensus       234 ~~~~~~~~~~~  244 (280)
                      ++.++++.+.+
T Consensus       454 r~~~~~~~~~~  464 (681)
T PRK08324        454 LDEEAAEAAAA  464 (681)
T ss_pred             CCHHHHHHHHH
Confidence            99887665543

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=95.96  E-value=0.18  Score=45.59  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=58.6

Q ss_pred             eeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcC---CCCCCEEEEECc-cHHHHHHHHHHH-HcCCCeE
Q 023561          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRI  229 (280)
Q Consensus       155 ~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~VlI~G~-g~~G~~a~~la~-~~g~~~v  229 (280)
                      .|-+|.++..+..+.  +.....++..-+ -+.|.|. +.+-..   .-..+.|+|.++ +-.++..+.+++ ..+.-++
T Consensus        90 ~YN~Y~r~~~d~~y~--~~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~  165 (314)
T PF11017_consen   90 IYNQYLRVSADPAYD--PEREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV  165 (314)
T ss_pred             hhhceeecCCCcccC--cchhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence            566777776554431  111222222222 4455554 433332   233467788887 778887777777 4554488


Q ss_pred             EEEcCChhHHHHHHHcCC-cEEEcCCC
Q 023561          230 IGVDVISEKFEIGKRFGV-TEFVNSKN  255 (280)
Q Consensus       230 i~~~~~~~~~~~~~~~Ga-~~vi~~~~  255 (280)
                      |.+. ++.+....+++|. ++++.|++
T Consensus       166 vglT-S~~N~~Fve~lg~Yd~V~~Yd~  191 (314)
T PF11017_consen  166 VGLT-SARNVAFVESLGCYDEVLTYDD  191 (314)
T ss_pred             EEEe-cCcchhhhhccCCceEEeehhh
Confidence            8886 5667779999998 78888876

>PRK08177 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.054  Score=46.12  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=35.6

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      ++++|+|+ |++|...+..+...|+ +|+++++++++.+.+++++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~   45 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALP   45 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhcc
Confidence            57899998 9999998888888899 8999999887776665544

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=95.84  E-value=0.052  Score=46.01  Aligned_cols=68  Identities=25%  Similarity=0.281  Sum_probs=48.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC---cEEEcCCCC-CCccHHHHHHHhc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---TEFVNSKNC-GDKSVSQVLLSIY  269 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga---~~vi~~~~~-~~~~~~~~v~~~~  269 (280)
                      .|.+|||.|+ +++|+..++-....|- .||+++|++++++.++..-.   ..+.|..+- ....+.+++++-.
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~   76 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEY   76 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhC
Confidence            4789999987 8999999888888888 89999999999999987332   344454430 1122555555443

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.65  E-value=0.088  Score=44.95  Aligned_cols=41  Identities=29%  Similarity=0.242  Sum_probs=36.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++|+|+|+ |++|..+++.+...|+ +|+.+++++++.+.+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   45 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRM   45 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999998 9999999999999999 899999988877655

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.59  E-value=0.039  Score=45.32  Aligned_cols=48  Identities=27%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      ..+|+|+|+|.+|..|+.+++.+|+ +++..+...++++..+..++..+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i   67 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFI   67 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEES
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceE
Confidence            4789999999999999999999999 89999999999998888887544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.58  E-value=0.084  Score=46.68  Aligned_cols=44  Identities=27%  Similarity=0.286  Sum_probs=39.2

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ..+++++|+|+ +++|...+..+...|. ++|.+.|+++|++.+.+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~   48 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAK   48 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHH
Confidence            56789999999 9999999999999999 99999999999887753

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.089  Score=48.06  Aligned_cols=48  Identities=31%  Similarity=0.357  Sum_probs=39.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HHcCCc
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~Ga~  248 (280)
                      .++++++|+|+ |++|...++.+...|+ +|+++++++++++.+    ++.|.+
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~   57 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAE   57 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence            35789999998 9999999999999999 799999988876544    345654

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.52  E-value=0.067  Score=49.75  Aligned_cols=46  Identities=26%  Similarity=0.304  Sum_probs=38.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++.+.+.. +|.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~  212 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG  212 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc
Confidence            34669999999999999999999999 79999998887766643 443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK05693 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.071  Score=46.83  Aligned_cols=46  Identities=26%  Similarity=0.313  Sum_probs=38.5

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +++||+|+ |++|...++.+...|+ +|+++++++++.+.+...+...
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   48 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTA   48 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeE
Confidence            57899998 9999999998888999 8999999888877776666543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.37  E-value=0.054  Score=52.23  Aligned_cols=50  Identities=26%  Similarity=0.264  Sum_probs=42.9

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ++.++++|+|+|.|..|++++.+++..|+ .|+++|..+++.+.++++|+.
T Consensus         8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~   57 (488)
T PRK03369          8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVA   57 (488)
T ss_pred             cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCE
Confidence            35678999999999999999999999999 899999877777767777773

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.25  E-value=0.11  Score=46.43  Aligned_cols=44  Identities=27%  Similarity=0.229  Sum_probs=38.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ..+++|+|+|+|++|.+++..+...|+++|++++++.+|.+.+.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            45689999999999999999999999989999999988766553

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.21  E-value=0.15  Score=45.65  Aligned_cols=46  Identities=26%  Similarity=0.413  Sum_probs=39.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|++++|+|.|.+|...+..++.+|+ +|+++++++++.+.+.++|.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~  195 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGL  195 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            57899999999999999999999999 89999998887665555443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06182 short chain dehydrogenase; Validated

Probab=95.18  E-value=0.093  Score=46.04  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=39.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ++++++|+|+ |++|...++.+...|+ +|+++++++++++.+...++.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~   49 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVH   49 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCe
Confidence            3678999998 9999999998888899 899999998887766655553

>PRK06949 short chain dehydrogenase; Provisional

Probab=95.16  E-value=0.11  Score=45.05  Aligned_cols=43  Identities=16%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ..+++++|+|+ |++|...+..+...|+ +|+++++++++++.+.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~   50 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELR   50 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            45799999998 9999999998888999 8999999887765543

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.15  E-value=0.11  Score=45.15  Aligned_cols=46  Identities=30%  Similarity=0.317  Sum_probs=37.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~Ga  247 (280)
                      ++++|+|+|+ |++|...++.+...|+ .|+++++++.+.+.. ++++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~   53 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGG   53 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCC
Confidence            5789999998 9999999999988999 889998887766544 34554

>PRK04148 hypothetical protein; Provisional

Probab=95.15  E-value=0.091  Score=41.58  Aligned_cols=55  Identities=24%  Similarity=0.409  Sum_probs=42.1

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      +.....++.+++++|.| .|...+..+..+|. .|+++|.+++..+.+++.+.+.+.
T Consensus        10 ~~~~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~   64 (134)
T PRK04148         10 ENYEKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFV   64 (134)
T ss_pred             HhcccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEE
Confidence            33344567899999998 77655555557898 999999999999999888775443

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.15  Score=43.94  Aligned_cols=43  Identities=19%  Similarity=0.155  Sum_probs=35.7

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      ++++|.|+ |++|...+..+...|+ +|+++++++++++.+.+.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~   45 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQS   45 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc
Confidence            57899998 9999988888888899 7999999988877766543

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.04  E-value=0.12  Score=45.39  Aligned_cols=44  Identities=32%  Similarity=0.320  Sum_probs=36.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG  246 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  246 (280)
                      +++++|+|+ |++|...++.+...|+ +|+++++++++++.+. +++
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~   50 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELG   50 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc
Confidence            679999998 9999999888888899 7888888888776543 354

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.01  E-value=0.15  Score=45.40  Aligned_cols=46  Identities=24%  Similarity=0.083  Sum_probs=38.9

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ....+++++|+|+|+.+.+++..+...|++++.++.|+.+|.+.+.
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            4455679999999999999999999999988999999988766553

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.00  E-value=0.19  Score=48.10  Aligned_cols=80  Identities=23%  Similarity=0.347  Sum_probs=51.3

Q ss_pred             cEEEcCCCCChhhhc-ccchhhHHHHHHHHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          166 HVVKVDPTVPPNRAC-LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       166 ~~~~iP~~ls~~~aa-~l~~~~~ta~~~l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++.+|+...-..+- .+.+..+ .+..+.+..+ .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+.
T Consensus       217 PV~nv~d~~tk~~aD~~~G~~~s-~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~  294 (476)
T PTZ00075        217 PAINVNDSVTKSKFDNIYGCRHS-LIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAA  294 (476)
T ss_pred             eEEEeCCcchHHHHHHHHHHHHH-HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHH
Confidence            355666654433221 1222222 2233444433 4578999999999999999999999999 8999988766654333


Q ss_pred             HcCC
Q 023561          244 RFGV  247 (280)
Q Consensus       244 ~~Ga  247 (280)
                      ..|+
T Consensus       295 ~~G~  298 (476)
T PTZ00075        295 MEGY  298 (476)
T ss_pred             hcCc
Confidence            3443

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.95  E-value=0.12  Score=46.14  Aligned_cols=46  Identities=33%  Similarity=0.291  Sum_probs=40.3

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ..++++++|+|+|+.+.+++..++..|+.+++++.|+.+|.+.+.+
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            3468999999999999999999999998899999999988776653

>PRK07060 short chain dehydrogenase; Provisional

Probab=94.90  E-value=0.23  Score=42.51  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=38.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      ++++++|+|+ |++|...++.+...|+ +|++++++.++.+.+.+ .+..
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~   56 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCE   56 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCe
Confidence            5689999998 9999999999999999 79999988877665544 4543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=94.88  E-value=0.076  Score=46.92  Aligned_cols=48  Identities=33%  Similarity=0.529  Sum_probs=40.2

Q ss_pred             HcCCCCCCEEEEECccHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHH
Q 023561          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR  244 (280)
Q Consensus       196 ~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~  244 (280)
                      ...+++|++||.+|.|. |..+..+++..+.. +|+++|.+++.++.+++
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~  120 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA  120 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence            35688999999999877 88888888887753 79999999998888875

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.87  E-value=0.15  Score=44.21  Aligned_cols=47  Identities=28%  Similarity=0.266  Sum_probs=38.6

Q ss_pred             cCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       197 ~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ...-+++++||+|+ |.+|...+..+...|+ +|+.++++++..+.+.+
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~   53 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAA   53 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            34457799999998 9999999999889999 79999988776665544

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.86  E-value=0.26  Score=41.75  Aligned_cols=47  Identities=34%  Similarity=0.483  Sum_probs=40.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      -.|++++|+|.|.+|..+++.+...|+ +|++++++.++.+.+.+ +|+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCC
Confidence            467899999999999999999999999 88999999887776654 465

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=94.80  E-value=0.16  Score=44.31  Aligned_cols=43  Identities=28%  Similarity=0.307  Sum_probs=36.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++++++|+|+ +++|...++.+...|+ +|+++++++++.+.+.+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~   48 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQ   48 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            5789999998 9999999988888999 79999998887766654

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.79  E-value=0.14  Score=45.80  Aligned_cols=44  Identities=23%  Similarity=0.216  Sum_probs=37.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ..+++++|+|+|+.+.+++..+...|+++++++.|+.+|.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            45789999999999999998888899989999999988766654

>PRK06196 oxidoreductase; Provisional

Probab=94.78  E-value=0.18  Score=45.37  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=34.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~   66 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA   66 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999888888999 889999887776544

>PRK08339 short chain dehydrogenase; Provisional

Probab=94.70  E-value=0.19  Score=44.01  Aligned_cols=42  Identities=21%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++++||.|+ +++|...++.+...|+ +|+++++++++++.+.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   49 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAR   49 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999998 9999999999989999 8999999877765443

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.70  E-value=0.26  Score=42.24  Aligned_cols=41  Identities=32%  Similarity=0.342  Sum_probs=34.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++++|+|+ |++|...++.+...|. +|+.+++++++.+.+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~   45 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEA   45 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4789999998 9999999999988999 799999887665443

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.67  E-value=0.094  Score=46.87  Aligned_cols=42  Identities=19%  Similarity=0.181  Sum_probs=37.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+|+.+.+++..+...|+++++++.|+.+|.+.+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L  165 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL  165 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            578999999999999999999999998999999998876555

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06500 short chain dehydrogenase; Provisional

Probab=94.62  E-value=0.27  Score=42.10  Aligned_cols=46  Identities=28%  Similarity=0.317  Sum_probs=37.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      ++++++|.|+ |++|...++.+...|+ +|+++++++++.+.+. +++.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~   52 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGE   52 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCC
Confidence            4789999998 9999999999999999 8999998877655443 4565

>PRK07904 short chain dehydrogenase; Provisional

Probab=94.61  E-value=0.29  Score=42.57  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEK  238 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~  238 (280)
                      +..+++++|.|+ |++|...++-+... |+ +|+++++++++
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~   45 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDP   45 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcch
Confidence            456789999998 99999988776666 47 88888887764

>PRK06198 short chain dehydrogenase; Provisional

Probab=94.60  E-value=0.25  Score=42.72  Aligned_cols=41  Identities=24%  Similarity=0.214  Sum_probs=34.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      .++++++|.|+ |++|...++.+...|++.|++++++.++.+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE   45 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence            35789999998 999999999998999954999998866554

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.56  E-value=0.21  Score=44.46  Aligned_cols=44  Identities=25%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.++.++.+.+.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~  164 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA  164 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            46789999999999999999999999769999999988765553

>PRK05867 short chain dehydrogenase; Provisional

Probab=94.50  E-value=0.17  Score=43.73  Aligned_cols=42  Identities=24%  Similarity=0.166  Sum_probs=35.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++++||+|+ +++|...+..+...|+ +|+.++++.++.+.+.
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   50 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLA   50 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            5789999998 9999999998888999 8999998877665543

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.50  E-value=0.2  Score=43.64  Aligned_cols=43  Identities=28%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             CCCCCEEEEECc-c-HHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          199 VEVGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       199 ~~~g~~VlI~G~-g-~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +.++++++|+|+ | ++|...++.+...|+ +|+++++++++++..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~   58 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET   58 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            345789999997 6 799999999999999 788888887765544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.45  E-value=0.13  Score=42.52  Aligned_cols=46  Identities=41%  Similarity=0.532  Sum_probs=37.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      -.|++|.|+|.|.+|...++.++.+|+ +|++.++...........+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence            458999999999999999999999999 9999998876655333333

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08265 short chain dehydrogenase; Provisional

Probab=94.45  E-value=0.21  Score=43.53  Aligned_cols=46  Identities=28%  Similarity=0.326  Sum_probs=37.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~Ga  247 (280)
                      .+++++|.|+ |++|...+..+...|+ +|++++++.++.+.+ ++++.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   52 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGE   52 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            4689999998 9999999988888999 899999987765544 34553

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.39  E-value=0.22  Score=42.57  Aligned_cols=77  Identities=21%  Similarity=0.123  Sum_probs=53.1

Q ss_pred             CCCCEEEEECc--cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC-cEEEcCCCC-CCccHHHHHHHhcCCCce
Q 023561          200 EVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV-TEFVNSKNC-GDKSVSQVLLSIYDLPLL  274 (280)
Q Consensus       200 ~~g~~VlI~G~--g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga-~~vi~~~~~-~~~~~~~~v~~~~~gg~~  274 (280)
                      ...+.|||.|.  |++|.+.+.-...-|+ .|+++.+.-++...+. ++|. ..-+|..+. +...+...++..++|.+|
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld   83 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLD   83 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceE
Confidence            34578999974  9999998888888899 9999999999888887 6886 334454431 112234445555556665


Q ss_pred             EEE
Q 023561          275 TIS  277 (280)
Q Consensus       275 ~v~  277 (280)
                      .+.
T Consensus        84 ~L~   86 (289)
T KOG1209|consen   84 LLY   86 (289)
T ss_pred             EEE
Confidence            544

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=94.34  E-value=0.2  Score=43.66  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=36.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++++++|.|+ |++|...++.+...|+ +|+++++++++.+.+++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~   47 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEA   47 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence            4789999998 9999999988888999 89999988877766654

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.17  E-value=0.39  Score=39.52  Aligned_cols=72  Identities=13%  Similarity=0.071  Sum_probs=48.1

Q ss_pred             cccchhhHHHHHHHHHHcCCCCCCEEEEECccH-HHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHHcCCcEEEcCC
Q 023561          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSK  254 (280)
Q Consensus       180 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~-~G~~a~~la~~~g~~~vi~~~~~~~~~~-~~~~~Ga~~vi~~~  254 (280)
                      ...+|....+...+.....--.+++|+|+|+|. +|..++..++..|+ +|.++.++.+.+. .+  ..+|-+|+..
T Consensus        22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l~~~l--~~aDiVIsat   95 (168)
T cd01080          22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNLKEHT--KQADIVIVAV   95 (168)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhHHHHH--hhCCEEEEcC
Confidence            445555555555343344456889999999986 59989999999999 7888887754332 33  3356666544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07677 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.22  Score=43.00  Aligned_cols=41  Identities=29%  Similarity=0.306  Sum_probs=34.4

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++++|.|+ |++|...++.+...|+ +|+++++++++.+.+.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~   42 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAK   42 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            478999998 9999999999888999 8999998877655443

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=94.10  E-value=0.35  Score=41.53  Aligned_cols=35  Identities=26%  Similarity=0.436  Sum_probs=30.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++++|.|+ |++|...+..+...|+ +|+++++++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~   39 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch
Confidence            5789999998 9999999988888999 888888765

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.06  E-value=0.18  Score=48.40  Aligned_cols=52  Identities=27%  Similarity=0.402  Sum_probs=42.7

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh---------------------hHHHHHHHcCCcEEEcC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS---------------------EKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~---------------------~~~~~~~~~Ga~~vi~~  253 (280)
                      .+++|+|+|+|+.|+.++..++..|. .|++++..+                     ...++++++|++..++.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~  212 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC  212 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence            57899999999999999999999999 788887653                     34677788998766654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.06  E-value=0.29  Score=43.68  Aligned_cols=41  Identities=24%  Similarity=0.341  Sum_probs=34.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+ |++|...++.+...|+ +|++++++.++++.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV   80 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            3588999998 9999999988888899 899999988776554

>PRK06953 short chain dehydrogenase; Provisional

Probab=94.03  E-value=0.42  Score=40.45  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ++++|+|+ |++|...++.+...|+ +|+.++++.++.+.++..+..
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~   47 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAE   47 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccce
Confidence            47899998 9999998887777899 789999988887777766653

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.03  E-value=0.29  Score=42.81  Aligned_cols=36  Identities=28%  Similarity=0.231  Sum_probs=29.2

Q ss_pred             CCCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -.|++++|.|+ +  ++|.+.++.+...|+ +|+..++++
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~   44 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE   44 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch
Confidence            35789999998 4  799998888888899 788877764

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.00  E-value=0.27  Score=44.09  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..+++++|+|+|++|.+++..+...|+++|+++.++.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4578999999999999988888889997799999885

>PRK09291 short chain dehydrogenase; Provisional

Probab=93.99  E-value=0.37  Score=41.56  Aligned_cols=41  Identities=22%  Similarity=0.214  Sum_probs=34.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++++||+|+ |++|...++.+...|+ +|+++.+++++.+.++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~   43 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALR   43 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            468999998 9999999999999999 8888888876655443

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.94  E-value=0.46  Score=41.04  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +++++||.|+ |.+|...+..+...|. +|+++++++++.+.
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~   46 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANA   46 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHH
Confidence            4789999998 9999999988888999 78888888765443

>PRK07814 short chain dehydrogenase; Provisional

Probab=93.91  E-value=0.18  Score=44.05  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=35.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++||.|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~   50 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEV   50 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999998888999 899999987765544

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.88  E-value=0.65  Score=37.87  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             EEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       205 VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      |+|+|+ |.+|...++.+...|. +|+++.+++++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~   37 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED   37 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc
Confidence            789998 9999999999999997 89999999998776

...

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.87  E-value=0.36  Score=40.34  Aligned_cols=43  Identities=28%  Similarity=0.265  Sum_probs=35.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++.+++|+|+ |.+|...+..+...|. +|+++.++.++.+.+.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~   69 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA   69 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            36789999997 9999988888888887 8888898887765543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07576 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.31  Score=42.56  Aligned_cols=41  Identities=27%  Similarity=0.347  Sum_probs=34.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .++++++|.|+ |++|...++.+...|+ +|+.+++++++.+.
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~   48 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDA   48 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            36789999998 9999999988888999 79999988766543

>PRK06841 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.28  Score=42.27  Aligned_cols=44  Identities=30%  Similarity=0.346  Sum_probs=36.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      +++++||+|+ |++|...++.+...|+ +|+.++++++..+...++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~   58 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQL   58 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh
Confidence            4789999998 9999998888888999 799999887766555553

>PRK07109 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.54  Score=42.89  Aligned_cols=42  Identities=26%  Similarity=0.205  Sum_probs=35.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.+++++|+|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~   48 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEAL   48 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            34689999998 9999999998888999 889899988776543

>PRK06180 short chain dehydrogenase; Provisional

Probab=93.83  E-value=0.3  Score=43.01  Aligned_cols=43  Identities=23%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~   46 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEA   46 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHh
Confidence            3578999998 9999999988888899 89999998887766655

>PRK06125 short chain dehydrogenase; Provisional

Probab=93.82  E-value=0.54  Score=40.77  Aligned_cols=41  Identities=29%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|.|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEAL   47 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            4789999998 9999999988888999 899999887766543

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=93.82  E-value=0.65  Score=41.79  Aligned_cols=75  Identities=19%  Similarity=0.183  Sum_probs=53.6

Q ss_pred             HHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcCCCCC-CccHHHHHHHhc
Q 023561          194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKNCG-DKSVSQVLLSIY  269 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~~~~~-~~~~~~~v~~~~  269 (280)
                      .....+++|.+| |-+. |..|+..+.+++..|.+-++++..  +.+|.++++.+|+.-++.+.... -....++++++.
T Consensus        54 e~~G~l~pG~tI-VE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~  132 (300)
T COG0031          54 EKRGLLKPGGTI-VEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELA  132 (300)
T ss_pred             HHcCCCCCCCEE-EEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHH
Confidence            455668999854 5565 999999999999999966666643  56899999999998887766311 133455544443

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.82  E-value=0.29  Score=43.15  Aligned_cols=36  Identities=22%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             CCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +++++||+|+ +  ++|.+.++.+...|+ +|+.++++++
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~   44 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEA   44 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchH
Confidence            5789999998 4  899999988888999 7888877653

>PRK05872 short chain dehydrogenase; Provisional

Probab=93.77  E-value=0.19  Score=44.86  Aligned_cols=45  Identities=27%  Similarity=0.383  Sum_probs=37.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG  246 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  246 (280)
                      +++++||+|+ |++|...++.+...|+ +|+++++++++++.+. +++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~   54 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELG   54 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence            5789999998 9999999999999999 8999999888766543 354

>PRK08267 short chain dehydrogenase; Provisional

Probab=93.77  E-value=0.47  Score=41.12  Aligned_cols=41  Identities=22%  Similarity=0.143  Sum_probs=34.6

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +++||+|+ |++|...+..+...|+ +|++++++.++.+.+.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~   43 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAA   43 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence            57999998 9999999988888898 89999988887766543

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.74  E-value=0.32  Score=41.42  Aligned_cols=41  Identities=24%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~   46 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEA   46 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHH
Confidence            4689999998 9999999888888899 799999888766544

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.73  E-value=0.33  Score=42.29  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             CCCEEEEECcc---HHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~g---~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .+++++|.|++   ++|...++.+...|+ +|++++++++.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~   48 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA   48 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh
Confidence            57899999973   899999988888999 78888877543

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.72  E-value=0.2  Score=43.03  Aligned_cols=41  Identities=27%  Similarity=0.300  Sum_probs=34.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++||+|+ |.+|...++.+...|. +|+++++++++.+.+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~   45 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERV   45 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4679999998 9999999888888899 799999988766554

>PRK08264 short chain dehydrogenase; Validated

Probab=93.65  E-value=0.48  Score=40.37  Aligned_cols=41  Identities=24%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .+++++|+|+ |.+|...+..+...|.++|++++++.++.+.
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~   46 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD   46 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence            4678999998 9999999998888998678999888766543

>PRK09072 short chain dehydrogenase; Provisional

Probab=93.64  E-value=0.5  Score=41.10  Aligned_cols=42  Identities=36%  Similarity=0.439  Sum_probs=35.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++++++|+|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   46 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALA   46 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            4678999998 9999999888888999 7999999887766554

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.62  E-value=0.58  Score=40.01  Aligned_cols=42  Identities=21%  Similarity=0.206  Sum_probs=34.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++++|+|+ |++|...+..+...|+ +|+++++++++.+..
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~   47 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEAREL   47 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999988888999 788888887755443

>PRK06484 short chain dehydrogenase; Validated

Probab=93.61  E-value=0.4  Score=46.23  Aligned_cols=47  Identities=21%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      ..+++++|+|+ +++|...++.+...|+ +|+.++++.++++.+. ++|.
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   51 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGP   51 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            35789999998 9999999999999999 8999998888766554 4654

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.59  E-value=0.36  Score=42.23  Aligned_cols=40  Identities=28%  Similarity=0.324  Sum_probs=34.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +++++||.|+ |.+|...++.+...|+ +|+.+++++++.+.
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~   46 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAA   46 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            4689999998 9999999999998999 89999988766443

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=93.58  E-value=0.62  Score=40.35  Aligned_cols=46  Identities=28%  Similarity=0.399  Sum_probs=34.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHHcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~--~~~~~~~~Ga  247 (280)
                      ++++++|.|+ +++|...++.+...|+ +|+++++++.  ..+.+++.+.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~   55 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGR   55 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCC
Confidence            5789999998 9999999998888999 7888876542  2233344554

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.55  E-value=0.23  Score=42.97  Aligned_cols=40  Identities=30%  Similarity=0.388  Sum_probs=34.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +++++||+|+ |++|...++.+...|+ +|+.+++++++.+.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~   49 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAA   49 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            5789999998 9999999988888899 89999988766543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.54  E-value=0.32  Score=43.66  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..+++++|+|+|+.+.+++..+...|+++++++.|++
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3668999999998898877777778998999999984

>PRK12742 oxidoreductase; Provisional

Probab=93.52  E-value=0.71  Score=39.21  Aligned_cols=47  Identities=23%  Similarity=0.217  Sum_probs=34.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH-HHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG-KRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~~-~~~Ga~  248 (280)
                      +++++||+|+ |++|...++.+...|+ +|+.+.+ ++++.+.+ .++++.
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~   54 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGAT   54 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCe
Confidence            4789999998 9999999999988999 6766644 44444443 446654

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=93.51  E-value=0.41  Score=45.20  Aligned_cols=50  Identities=18%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             cCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcC
Q 023561          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG  246 (280)
Q Consensus       197 ~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  246 (280)
                      .....+++|+|+|+|.+|.+++..+...|+..++++.++.+|.+.+. +++
T Consensus       176 ~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~  226 (414)
T PRK13940        176 LDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR  226 (414)
T ss_pred             hcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence            34456889999999999999999999999889999999987755544 455

>PRK05717 oxidoreductase; Validated

Probab=93.42  E-value=0.4  Score=41.46  Aligned_cols=47  Identities=23%  Similarity=0.251  Sum_probs=36.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~Ga  247 (280)
                      .+|++++|+|+ |++|...+..+...|+ +|+.++++.++.+.+ ++++.
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~   56 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGE   56 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCC
Confidence            35789999998 9999998888888898 888888776654443 34543

>PRK06484 short chain dehydrogenase; Validated

Probab=93.40  E-value=0.48  Score=45.68  Aligned_cols=47  Identities=30%  Similarity=0.273  Sum_probs=39.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      ..++++||.|+ +++|...++.+...|+ +|+.+++++++++.+.+ ++.
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~  315 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGD  315 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            35789999998 9999999988888999 89999998887776654 554

>PRK05876 short chain dehydrogenase; Provisional

Probab=93.39  E-value=0.74  Score=40.60  Aligned_cols=42  Identities=31%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -++++++|+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~   46 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQA   46 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999988888999 788888887665543

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.37  E-value=0.41  Score=41.34  Aligned_cols=41  Identities=22%  Similarity=0.198  Sum_probs=34.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++++|.|+ |++|...+..+...|+ +|+.+++++++++.+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~   46 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQL   46 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999998 9999999988888999 799999887766544

>PRK07454 short chain dehydrogenase; Provisional

Probab=93.32  E-value=0.52  Score=40.26  Aligned_cols=42  Identities=21%  Similarity=0.125  Sum_probs=35.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ...++++|.|+ |.+|...+..+...|. +|+++++++++.+.+
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~   46 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEAL   46 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            45678999998 9999999988888999 899999987765444

>PRK07062 short chain dehydrogenase; Provisional

Probab=93.32  E-value=0.25  Score=43.04  Aligned_cols=41  Identities=27%  Similarity=0.251  Sum_probs=35.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|.|+ +++|...++.+...|+ +|+++++++++++.+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   48 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASA   48 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            5789999998 9999999999888999 799999988766543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.31  E-value=0.21  Score=48.87  Aligned_cols=47  Identities=13%  Similarity=0.101  Sum_probs=39.5

Q ss_pred             HHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ...+.+.|+++||+|+ |.+|...++.+...|+ +|+++.++.++.+.+
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l  120 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL  120 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            3456778999999998 9999999988888999 889999988876543

>PRK06914 short chain dehydrogenase; Provisional

Probab=93.25  E-value=0.56  Score=41.15  Aligned_cols=41  Identities=20%  Similarity=0.085  Sum_probs=33.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |.+|...+..+...|+ +|++++++.++.+..
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~   43 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENL   43 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            3578999998 9999999988888899 888888887765544

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=93.23  E-value=0.46  Score=40.70  Aligned_cols=41  Identities=27%  Similarity=0.225  Sum_probs=34.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++||+|+ |.+|...+..+...|. +|+.++++.++.+.+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   43 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKV   43 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            4689999998 9999999988888899 888888887665444

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.20  E-value=0.25  Score=49.41  Aligned_cols=52  Identities=29%  Similarity=0.312  Sum_probs=41.1

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh---------------------HHHHHHHcCCcEEEc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVN  252 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~---------------------~~~~~~~~Ga~~vi~  252 (280)
                      ..+++|+|+|+|+.|+.++..++..|. .|++++..+.                     ..+.++++|++...+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~  397 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELN  397 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECC
Confidence            357899999999999999999999999 7888886532                     356667788754443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.17  E-value=0.69  Score=36.79  Aligned_cols=48  Identities=35%  Similarity=0.432  Sum_probs=37.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHHcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~Ga  247 (280)
                      ..+.+++|+|.|.+|...++.+...|...|++++++.++.+. .++++.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~   65 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE   65 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            557899999999999999988888875489999998877654 344443

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12828 short chain dehydrogenase; Provisional

Probab=93.15  E-value=0.26  Score=41.76  Aligned_cols=37  Identities=30%  Similarity=0.284  Sum_probs=32.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +++++||+|+ |.+|...++.+...|+ +|++++++.++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~   43 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAP   43 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHh
Confidence            4789999998 9999999988888899 79999887655

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=93.14  E-value=0.55  Score=40.61  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=35.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++++||.|+ |++|...+..+...|+ +|+.++++.++.+.+.+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~   48 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAAL   48 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence            4678999998 9999999988888999 89999998877655443

>PRK08862 short chain dehydrogenase; Provisional

Probab=93.14  E-value=0.52  Score=40.40  Aligned_cols=41  Identities=17%  Similarity=0.128  Sum_probs=34.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +|++++|.|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~   45 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDT   45 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4789999998 8999998888888999 789999888776543

>PRK07024 short chain dehydrogenase; Provisional

Probab=93.14  E-value=0.53  Score=40.83  Aligned_cols=41  Identities=24%  Similarity=0.150  Sum_probs=34.4

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++++|+|+ |++|...+..+...|+ +|++++++.++++...
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~   43 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFA   43 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            468999998 9999998888888899 8999999887766543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.14  E-value=0.27  Score=49.03  Aligned_cols=53  Identities=25%  Similarity=0.319  Sum_probs=43.7

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh---------------------HHHHHHHcCCcEEEcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~---------------------~~~~~~~~Ga~~vi~~~  254 (280)
                      .+++|+|+|+|+.|+.++..++..|. .|++++..+.                     +.++++++|++..++..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~  382 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCE  382 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCc
Confidence            48999999999999999999999999 7888876652                     56777889987666653

>PRK08703 short chain dehydrogenase; Provisional

Probab=93.13  E-value=0.27  Score=42.07  Aligned_cols=41  Identities=27%  Similarity=0.310  Sum_probs=34.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++++|+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~   46 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKV   46 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHH
Confidence            4689999998 9999999988888999 899999988766544

>PRK07890 short chain dehydrogenase; Provisional

Probab=93.12  E-value=0.3  Score=42.19  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=35.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -++++++|.|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   46 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVA   46 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            35789999998 9999999988889999 8999998877655443

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=93.11  E-value=0.45  Score=41.20  Aligned_cols=40  Identities=38%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ++++++|.|+ |++|...++.+...|+ +|+++++++...+.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~   47 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEV   47 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHH
Confidence            4689999998 9999999988888999 88889887543333

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.05  E-value=0.53  Score=40.64  Aligned_cols=36  Identities=33%  Similarity=0.379  Sum_probs=32.5

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCC--eEEEEcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~--~vi~~~~~  235 (280)
                      -++.+++|+|+|+.|...+..+...|++  ++++++++
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4568999999999999999988899998  89999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.04  E-value=0.32  Score=40.44  Aligned_cols=39  Identities=23%  Similarity=0.325  Sum_probs=31.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|.|+|+|.+|...+.++...|. .|+.++.+++.++..+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~   39 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERAR   39 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhh
Confidence            58899999999998888888899 9999999988765543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07063 short chain dehydrogenase; Provisional

Probab=93.03  E-value=0.3  Score=42.38  Aligned_cols=41  Identities=24%  Similarity=0.262  Sum_probs=34.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|.|+ |++|...+..+...|+ +|+.+++++++.+..
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~   47 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERA   47 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4789999998 9999999998889999 789999887765544

>PLN02780 ketoreductase/ oxidoreductase

Probab=93.02  E-value=0.25  Score=44.82  Aligned_cols=41  Identities=22%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .|++++|+|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence            5899999998 9999998887777899 799999998887654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.99  E-value=0.31  Score=42.20  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -+++++||.|+ |++|...++.+...|+ +|++++++.++++...
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   53 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAA   53 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            35789999998 9999999988888999 8999998877665443

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=92.99  E-value=0.65  Score=39.42  Aligned_cols=40  Identities=30%  Similarity=0.324  Sum_probs=33.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +++++||+|+ |.+|...+..+...|. .|+++.+++++.+.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~   44 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEA   44 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHH
Confidence            3578999998 9999999988888899 69999988776443

>PRK07035 short chain dehydrogenase; Provisional

Probab=92.95  E-value=0.32  Score=41.90  Aligned_cols=41  Identities=22%  Similarity=0.209  Sum_probs=34.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++++|.|+ |++|...++.+...|. +|+.++++.++.+.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~   48 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAV   48 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999998 9999999998888999 899999887665443

>PRK05854 short chain dehydrogenase; Provisional

Probab=92.88  E-value=0.31  Score=43.99  Aligned_cols=41  Identities=27%  Similarity=0.282  Sum_probs=34.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+ +++|...+..+...|+ +|++++++.++.+.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~   54 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAA   54 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4789999998 9999999888888999 889899887765443

>PRK06138 short chain dehydrogenase; Provisional

Probab=92.83  E-value=0.56  Score=40.21  Aligned_cols=41  Identities=29%  Similarity=0.280  Sum_probs=33.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++++|.|+ |.+|...++.+...|+ +|+.+.++.++.+..
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~   45 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERV   45 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHH
Confidence            4689999998 9999998888778898 799998887655443

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=92.80  E-value=0.6  Score=40.53  Aligned_cols=38  Identities=26%  Similarity=0.287  Sum_probs=31.9

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++|+|+ +++|...++.+...|+ +|+.+++++++++.+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   40 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKA   40 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            6899998 9999999888888999 899999887765443

>PRK08628 short chain dehydrogenase; Provisional

Probab=92.77  E-value=0.55  Score=40.58  Aligned_cols=43  Identities=19%  Similarity=0.125  Sum_probs=34.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +++++||+|+ |++|...+..+...|+ +++++++++++.+..++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~   49 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEE   49 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHH
Confidence            4689999998 9999998888888899 78888888776644443

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=92.68  E-value=0.34  Score=41.64  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=34.8

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ..++++++|.|+ |++|...++.+...|+ +|++++++.++.+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~   51 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEA   51 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Confidence            457899999998 9999998888888899 88999988765433

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=92.68  E-value=0.59  Score=40.99  Aligned_cols=40  Identities=35%  Similarity=0.377  Sum_probs=33.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .+++++|.|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~   49 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEA   49 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4789999998 9999999998888999 89999988765543

>PRK06194 hypothetical protein; Provisional

Probab=92.67  E-value=0.34  Score=42.65  Aligned_cols=41  Identities=27%  Similarity=0.404  Sum_probs=33.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|++++++.++++..
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   46 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRA   46 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            3678999998 9999999988888899 899999876654443

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.66  E-value=0.36  Score=41.63  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ++++++|.|+ |++|...+..+...|+ +|+.+++++++.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~   45 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGE   45 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            4789999998 9999998888888898 7999998876644

>PRK08589 short chain dehydrogenase; Validated

Probab=92.61  E-value=0.57  Score=41.09  Aligned_cols=35  Identities=31%  Similarity=0.354  Sum_probs=30.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +++++||.|+ +++|...+..+...|+ +|+++++++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~   40 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE   40 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH
Confidence            5789999998 9999998888888899 889888883

>PRK08303 short chain dehydrogenase; Provisional

Probab=92.60  E-value=0.71  Score=41.57  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=30.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .+++++|.|+ +++|...++.+...|+ +|++++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            5789999998 8999999988888999 88888876

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=92.59  E-value=0.55  Score=43.89  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       185 ~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +-...+..+.+..++++|++||-+|.| .|..+..+++..|+ +|++++.+++.++.+++
T Consensus       151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~  208 (383)
T PRK11705        151 AQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQE  208 (383)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            344455556678889999999999974 46677888888888 89999999999888876

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.55  E-value=0.69  Score=40.88  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             CCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++++|+|+   +++|.+.++.+...|+ +|+.+++++
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~   41 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNE   41 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCH
Confidence            4789999997   4899999888888999 788888774

>PRK09186 flagellin modification protein A; Provisional

Probab=92.55  E-value=0.37  Score=41.51  Aligned_cols=41  Identities=29%  Similarity=0.398  Sum_probs=34.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++++|.|+ |++|...+..+...|+ +|+++.+++++.+.+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~   44 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNEL   44 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHH
Confidence            4789999998 9999999988888999 788888887765544

>PRK05884 short chain dehydrogenase; Provisional

Probab=92.54  E-value=0.84  Score=38.85  Aligned_cols=44  Identities=25%  Similarity=0.401  Sum_probs=35.0

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCc
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT  248 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~  248 (280)
                      +++|.|+ |++|...++.+...|+ +|+.+++++++++.+. +.++.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~   47 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVD   47 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCc
Confidence            5889998 9999999988888899 8888998887776543 35543

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=92.52  E-value=0.42  Score=38.26  Aligned_cols=33  Identities=33%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ++++|+|+ +++|...++.+...|...|+.+.++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~   34 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS   34 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence            47899998 9999998877777777688888888

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.51  E-value=0.71  Score=40.83  Aligned_cols=43  Identities=23%  Similarity=0.153  Sum_probs=35.4

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ...+++++|+|+|++|.+.+..+...|+ .|++++++++|.+.+
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL  156 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3557899999999999998888888898 889999987765443

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06483 dihydromonapterin reductase; Provisional

Probab=92.50  E-value=0.92  Score=38.65  Aligned_cols=45  Identities=22%  Similarity=0.164  Sum_probs=34.7

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHHcCC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGV  247 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~-~~~~~~~Ga  247 (280)
                      ++++||.|+ +++|...++.+...|+ +|+++++++++ .+.+++.|+
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   48 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGA   48 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCC
Confidence            578999998 9999999988888999 88888877643 334444564

>PRK08251 short chain dehydrogenase; Provisional

Probab=92.49  E-value=0.91  Score=38.89  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=33.0

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++|+|+ |++|...+..+...|. +|+++++++++.+.+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~   42 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEEL   42 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            578999998 9999988877777898 888888888766544

>PRK06114 short chain dehydrogenase; Provisional

Probab=92.45  E-value=0.74  Score=39.81  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ++++++|.|+ +++|...++.+...|+ +|+++++++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~   42 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRT   42 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            5789999998 9999999998888999 888888764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=92.44  E-value=0.41  Score=41.32  Aligned_cols=41  Identities=17%  Similarity=0.280  Sum_probs=34.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      -++++++|.|+ |++|...+..+...|+ +|+.+++++++++.
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~   50 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEA   50 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            35889999998 9999998888888899 89999988765443

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.37  E-value=0.93  Score=38.61  Aligned_cols=69  Identities=26%  Similarity=0.324  Sum_probs=49.7

Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHH----HHHHcCCc
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVT  248 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~----~~~~~Ga~  248 (280)
                      +....-.++.+...|.  +.+...+++|++||=+|+|. |..++-+++..+  +|+.+++.++-.+    .++.+|.+
T Consensus        48 pi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~  120 (209)
T COG2518          48 PIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYE  120 (209)
T ss_pred             cCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCC
Confidence            3334444554555554  56888999999999999754 888999999887  7999999876333    34557774

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=92.35  E-value=0.95  Score=40.48  Aligned_cols=44  Identities=23%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ..++++||-+|.|. |.+++.+++ .|..+|+++|.++...+.+++
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            45789999999877 777777665 577799999999887766654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.35  E-value=0.7  Score=34.86  Aligned_cols=46  Identities=33%  Similarity=0.455  Sum_probs=38.4

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      |+|.|.|.+|...++.++..+. .|++++.++++.+.+++.|.. ++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~   46 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIY   46 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-ccc
Confidence            5788999999999999999665 899999999999999988854 443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=92.33  E-value=0.43  Score=41.18  Aligned_cols=40  Identities=35%  Similarity=0.537  Sum_probs=33.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .++++||+|+ |++|...+..+...|+ +|+.+++++++.+.
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~   48 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAEL   48 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            5789999998 9999999988888999 89999988766543

>PRK12367 short chain dehydrogenase; Provisional

Probab=92.31  E-value=1.1  Score=38.95  Aligned_cols=35  Identities=31%  Similarity=0.528  Sum_probs=30.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            4689999998 9999999988888999 888888765

>PRK09242 tropinone reductase; Provisional

Probab=92.30  E-value=0.43  Score=41.27  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=34.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|.|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~   49 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQA   49 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            4789999998 9999999999888999 899998887765544

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=92.29  E-value=0.4  Score=43.23  Aligned_cols=41  Identities=27%  Similarity=0.234  Sum_probs=34.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+ |++|...++.+...|+ +|++++++.++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~   46 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAA   46 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4789999998 9999999988888898 899999888776544

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=92.18  E-value=0.7  Score=37.76  Aligned_cols=53  Identities=26%  Similarity=0.369  Sum_probs=37.9

Q ss_pred             HHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          193 AWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       193 l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      +.+..+ .-.|++++|.|=|.+|...++.++.+|+ +|++++.++-+.-.+..-|
T Consensus        13 i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dG   66 (162)
T PF00670_consen   13 IMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDG   66 (162)
T ss_dssp             HHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT
T ss_pred             HHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcC
Confidence            444433 5678999999999999999999999999 9999999997766665444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07774 short chain dehydrogenase; Provisional

Probab=92.17  E-value=0.47  Score=40.71  Aligned_cols=40  Identities=30%  Similarity=0.359  Sum_probs=33.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ++++++|+|+ |.+|...+..+...|. +|+++++++++.+.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~   45 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAER   45 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            5689999998 9999999988888898 89999988765433

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.16  E-value=0.82  Score=40.28  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=29.5

Q ss_pred             CCCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -.++++||.|+   +++|...+..+...|+ +|+.+.+++
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~   46 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD   46 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch
Confidence            35789999997   5899999888888999 788777653

>PRK08643 acetoin reductase; Validated

Probab=92.13  E-value=0.46  Score=41.04  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=33.5

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++|.|+ |++|...++.+...|+ +|+.++++.++.+.+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~   42 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAA   42 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 9999999988888999 899998887665443

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=92.11  E-value=0.68  Score=40.05  Aligned_cols=39  Identities=26%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ++++||.|+ |.+|...+..+...|+ +|+.++++.++.+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~   41 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAAN   41 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            578999998 9999998888888899 88999888765543

>PRK07806 short chain dehydrogenase; Provisional

Probab=92.06  E-value=0.96  Score=38.76  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=29.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ++++++|+|+ |++|...+..+...|. +|+++.++.
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~   40 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQK   40 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4689999998 9999999988888898 788877754

>PRK07791 short chain dehydrogenase; Provisional

Probab=92.03  E-value=1.8  Score=38.41  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -++++++|.|+ +++|...+..+...|+ +|++++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            46789999998 9999998888888999 788776653

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.98  E-value=0.99  Score=40.42  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=34.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh----HHHHHHHcC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRFG  246 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~----~~~~~~~~G  246 (280)
                      -.|+.|||+|+ +++|++.++=...+|+ .++..|.+.+    ..+..++.|
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g   86 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG   86 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC
Confidence            46899999998 8999987777777788 7888887754    344445555

>PRK06197 short chain dehydrogenase; Provisional

Probab=91.98  E-value=0.41  Score=42.78  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=33.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ..+++++|.|+ |++|...+..+...|+ +|++++++.++.+
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~   54 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGK   54 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            36789999998 9999999888888899 7888888876644

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=91.95  E-value=0.96  Score=38.62  Aligned_cols=39  Identities=28%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      .+++++|+|+ |.+|...+..+...|. +|++++++.++..
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~   44 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAA   44 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4689999998 9999998888888898 8999998865443

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=91.90  E-value=1.7  Score=37.02  Aligned_cols=42  Identities=26%  Similarity=0.225  Sum_probs=34.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++++++|.|+ |.+|...+..+...|. .|+..+++.++++.+.
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~   47 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALA   47 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            4689999998 9999998888888898 7888888777665543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=91.89  E-value=0.46  Score=40.79  Aligned_cols=41  Identities=29%  Similarity=0.388  Sum_probs=34.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++++||.|+ |.+|...+..+...|. +|++++++.++.+.+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~   42 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAA   42 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            358999998 9999999988888899 8999998877665543

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08226 short chain dehydrogenase; Provisional

Probab=91.85  E-value=0.99  Score=39.09  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=33.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++++|+|+ |++|...+..+...|+ +|+.++++++..+..
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~   46 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLA   46 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            5689999998 9999999988888999 799998877544433

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.84  E-value=0.75  Score=44.08  Aligned_cols=50  Identities=34%  Similarity=0.323  Sum_probs=38.6

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh-----HHHHHHHcCCcEE
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-----KFEIGKRFGVTEF  250 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~-----~~~~~~~~Ga~~v  250 (280)
                      ..+++|+|+|+|.+|+.++.+++..|. .|++++..+.     ..+.+++.|+...
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~   68 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVR   68 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEE
Confidence            457899999999999999999999999 7888885542     2345666776543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.84  E-value=0.52  Score=40.51  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++||+|+ |.+|...+..+...|. +|+++++++++.+..
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   44 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAA   44 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            4679999998 9999999988888899 889999887765443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.83  E-value=0.62  Score=43.48  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=37.9

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      .+|||+|+|.+|..+++.+...+-.+|++.+++.++.+.+....
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~   45 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI   45 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc
Confidence            47899999999999999988888459999999999888887654

>PRK07074 short chain dehydrogenase; Provisional

Probab=91.81  E-value=0.93  Score=39.12  Aligned_cols=41  Identities=24%  Similarity=0.373  Sum_probs=33.8

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++++|+|+ |.+|...+..+...|+ +|++++++.++.+.+.
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~   43 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFA   43 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            468999998 9999998888888898 7999998877765443

>PRK06720 hypothetical protein; Provisional

Probab=91.80  E-value=1.1  Score=36.72  Aligned_cols=38  Identities=26%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      ++++++|.|+ +++|...+..+...|+ +|++++++.++.
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~   53 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESG   53 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHH
Confidence            5789999998 8999998888888898 899998876654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.77  E-value=0.91  Score=39.37  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=33.8

Q ss_pred             CCCEEEEECcc---HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          201 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       201 ~g~~VlI~G~g---~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .+++++|.|++   ++|.+.++.+...|+ +|+.++++++..+.++++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~   52 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL   52 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh
Confidence            57899999974   899998888888999 788888775444444443

>PRK07856 short chain dehydrogenase; Provisional

Probab=91.73  E-value=1.3  Score=38.24  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+.++++.++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~   42 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            5789999998 9999999988888999 88999887655

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=91.67  E-value=0.98  Score=38.88  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=35.3

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      +++|.|+ |++|...+..+...|+ +|+++++++++++.+.. ++.
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   46 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGD   46 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcc
Confidence            6899998 9999999988888999 89999998887766544 443

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.66  E-value=1  Score=39.26  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=28.9

Q ss_pred             CCCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -++++++|.|+   +++|.+.++.+...|+ +|+.+.+.+
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~   42 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVD   42 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcH
Confidence            35789999994   5899998888888999 787776554

>PRK07102 short chain dehydrogenase; Provisional

Probab=91.63  E-value=1.4  Score=37.76  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=32.3

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ++++|+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~   40 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLER   40 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence            57999998 9999998888888899 89999988876544

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.58  E-value=0.89  Score=39.35  Aligned_cols=35  Identities=23%  Similarity=0.165  Sum_probs=30.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..++++||+|+ |++|...++.+...|+ +|++++++
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~   48 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG   48 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789999998 9999999988888999 78888776

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=91.55  E-value=1.7  Score=39.19  Aligned_cols=68  Identities=25%  Similarity=0.281  Sum_probs=48.8

Q ss_pred             CCCCEEEEECc-cHHHHHH-HHHHHHcCCCeEEEEcCChhHHHHHHH-----cCC---cEEEcCCCCCCccHHHHHHHhc
Q 023561          200 EVGSTVVIFGL-GSIGLAV-AEGARLCGATRIIGVDVISEKFEIGKR-----FGV---TEFVNSKNCGDKSVSQVLLSIY  269 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a-~~la~~~g~~~vi~~~~~~~~~~~~~~-----~Ga---~~vi~~~~~~~~~~~~~v~~~~  269 (280)
                      +.|++.+|.|+ .++|..- -+||+ .|+ +|+.+.|+++|++..++     .++   ..++|..+  +....+.+++..
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~--~~~~ye~i~~~l  122 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTK--GDEVYEKLLEKL  122 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCC--CchhHHHHHHHh
Confidence            45789999998 8999874 45666 999 79999999999877653     554   23456655  222577777766


Q ss_pred             CC
Q 023561          270 DL  271 (280)
Q Consensus       270 ~g  271 (280)
                      .+
T Consensus       123 ~~  124 (312)
T KOG1014|consen  123 AG  124 (312)
T ss_pred             cC
Confidence            55

>PRK06181 short chain dehydrogenase; Provisional

Probab=91.54  E-value=0.56  Score=40.68  Aligned_cols=38  Identities=26%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ++++||.|+ |++|...++.+...|. +|+++++++++.+
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~   39 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLA   39 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            357999998 9999999988888998 8999998876544

>PRK08263 short chain dehydrogenase; Provisional

Probab=91.49  E-value=1.1  Score=39.36  Aligned_cols=42  Identities=19%  Similarity=0.125  Sum_probs=34.9

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++++||.|+ |++|...+..+...|. .|+.++++.++++.+.+
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~   45 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAE   45 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            578999998 9999998888888898 79999988877665544

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.44  E-value=0.46  Score=37.72  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=33.9

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      |+|+|+|.+|.+.+..++..|. .|..+.+.+ +.+.+++.|.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~   41 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGL   41 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCE
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeE
Confidence            6899999999998888877888 899998877 7777776554

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.38  E-value=1.6  Score=39.11  Aligned_cols=35  Identities=31%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -++++++|+|+ +++|...+..+...|+ +|+++++.
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~   45 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVA   45 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence            35789999998 9999998888888899 78887764

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=91.37  E-value=1.2  Score=38.52  Aligned_cols=36  Identities=25%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..+++++|.|+ |++|...++.+...|+ +|+.+++.+
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~   44 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVE   44 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcc
Confidence            34789999998 9999999998888999 788776543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.36  E-value=1  Score=38.97  Aligned_cols=46  Identities=26%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~~~~~Ga  247 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+++.+ ++++.+.+++.++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~   53 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGV   53 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCC
Confidence            4689999998 9999999988888999 6666644 4444445544443

>PRK06398 aldose dehydrogenase; Validated

Probab=91.30  E-value=0.55  Score=40.88  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .|+++||+|+ +++|...+..+...|+ +|+.+++++++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~   42 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPS   42 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccc
Confidence            4789999998 9999999999988999 88888876543

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.29  E-value=0.88  Score=40.65  Aligned_cols=49  Identities=29%  Similarity=0.364  Sum_probs=35.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HHcCCcE
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE  249 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~Ga~~  249 (280)
                      ..+++|+|.|+ +++|...+.-.-..|+ .++.+.+..++++.+    ++.+..+
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~   63 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLE   63 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcC
Confidence            45799999999 9999988877777888 555555566555544    4555533

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=91.28  E-value=0.17  Score=27.29  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=15.5

Q ss_pred             eeeeeecCCCCCcEEEEeecCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPP   39 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~   39 (280)
                      |||+++.++++ .+++++|.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            79999999988 99999988865

>PRK06482 short chain dehydrogenase; Provisional

Probab=91.27  E-value=1.1  Score=39.29  Aligned_cols=41  Identities=20%  Similarity=0.167  Sum_probs=34.8

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +++||+|+ |.+|...++.+...|. +|+++.+++++++.+++
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~   44 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKA   44 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            67999998 9999998888888898 89999998887766654

>PLN02253 xanthoxin dehydrogenase

Probab=91.18  E-value=0.66  Score=40.71  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .+++++|.|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~   57 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQN   57 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            4689999998 9999998888888899 88888887665443

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.14  E-value=0.72  Score=39.36  Aligned_cols=40  Identities=25%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .+++++|.|+ |++|...+..+...|+ .|+.+++++++.+.
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~   46 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKA   46 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4688999998 9999999988888999 89999988766543

>PRK06940 short chain dehydrogenase; Provisional

Probab=91.14  E-value=1.5  Score=38.53  Aligned_cols=39  Identities=31%  Similarity=0.509  Sum_probs=30.7

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++|.|+|++|...+..+. .|. +|+.+++++++++.+
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~   40 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAA   40 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHH
Confidence            467899999999998887774 788 899999887665433

>PRK06128 oxidoreductase; Provisional

Probab=91.00  E-value=1.8  Score=38.56  Aligned_cols=34  Identities=29%  Similarity=0.193  Sum_probs=28.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .++++||.|+ |++|...+..+...|+ +|+++.++
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~   88 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLP   88 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            5789999998 9999999888888899 77776543

>PRK07577 short chain dehydrogenase; Provisional

Probab=91.00  E-value=0.99  Score=38.23  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ++++++|.|+ |++|...+..+...|. +|++++++.++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~   39 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAID   39 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            3678999998 9999999988888998 88888887654

>PLN00203 glutamyl-tRNA reductase

Probab=90.92  E-value=1.1  Score=43.55  Aligned_cols=44  Identities=18%  Similarity=0.328  Sum_probs=38.0

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .+.+|+|+|+|.+|.+++..+...|++.|+++.++.++.+.+.+
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~  308 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE  308 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence            37899999999999999999999998789999999888665543

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.89  E-value=2.3  Score=36.36  Aligned_cols=41  Identities=24%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~~~~~~~  242 (280)
                      .+++++|+|+ |++|...+..+...|+ +|+.+. +++++.+.+
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~   46 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEAL   46 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            3578999998 9999999988888899 666654 344444433

>PRK00811 spermidine synthase; Provisional

Probab=90.75  E-value=0.86  Score=40.70  Aligned_cols=44  Identities=20%  Similarity=0.248  Sum_probs=35.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ...++||++|+|. |..+..+++..+.++|++++.+++-.+.+++
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~  118 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRK  118 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHH
Confidence            4568999998754 6667777777677799999999988888876

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=90.72  E-value=0.87  Score=38.19  Aligned_cols=49  Identities=18%  Similarity=0.364  Sum_probs=39.9

Q ss_pred             HHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHH
Q 023561          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK  243 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~  243 (280)
                      .....+.++++|+-+|+|. |.+++.+++..+. .+|++++.+++..+.++
T Consensus        33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~   82 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR   82 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            3456888999999999877 8888888887642 48999999998877664

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.71  E-value=1.8  Score=41.05  Aligned_cols=47  Identities=32%  Similarity=0.478  Sum_probs=35.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh--hHH-HHHHHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKF-EIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~--~~~-~~~~~~Ga~  248 (280)
                      ++++++|+|+ |++|...++.+...|+ +|+++++.+  +++ +..++++..
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~  259 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGT  259 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCe
Confidence            5789999998 9999999999889999 788887643  232 233346653

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.70  E-value=1.5  Score=37.60  Aligned_cols=38  Identities=21%  Similarity=0.129  Sum_probs=29.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEE-EcCChhHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKF  239 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~-~~~~~~~~  239 (280)
                      ++++++|.|+ |.+|...+..+...|+ +|++ ..++.++.
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~   42 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAA   42 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            4679999998 9999999988888999 5554 46665554

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=90.67  E-value=0.49  Score=42.59  Aligned_cols=74  Identities=22%  Similarity=0.278  Sum_probs=43.2

Q ss_pred             ecccEEEcCCCCChhhhcccchhhHHHHHHHHHHc-CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          163 DIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       163 ~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +...++.+.+++.+-..     ...|...++.... ...+|++||=+|.|. |.+++..++ +|+++|+++|.++.-.+.
T Consensus       127 ~~~~~I~idPg~AFGTG-----~H~TT~lcl~~l~~~~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp~Av~~  199 (295)
T PF06325_consen  127 PDEIVIEIDPGMAFGTG-----HHPTTRLCLELLEKYVKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDPLAVEA  199 (295)
T ss_dssp             TTSEEEEESTTSSS-SS-----HCHHHHHHHHHHHHHSSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSCHHHHH
T ss_pred             CCcEEEEECCCCcccCC-----CCHHHHHHHHHHHHhccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCHHHHHH
Confidence            34556677766665554     2222222222221 257889998888643 555555555 588899999998865555


Q ss_pred             HH
Q 023561          242 GK  243 (280)
Q Consensus       242 ~~  243 (280)
                      ++
T Consensus       200 a~  201 (295)
T PF06325_consen  200 AR  201 (295)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.65  E-value=1.4  Score=38.58  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=28.8

Q ss_pred             CCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++++|.|+ +  ++|.+.+..+...|+ +|+.+++++
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~   42 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   42 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch
Confidence            5789999998 3  799998888888999 788887763

>PRK06179 short chain dehydrogenase; Provisional

Probab=90.63  E-value=0.6  Score=40.70  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      .+++++|+|+ |++|...++.+...|+ +|++++++.++.+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~   42 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAA   42 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcc
Confidence            3578999998 9999998888888899 7999998766553

>PLN02366 spermidine synthase

Probab=90.62  E-value=0.89  Score=41.20  Aligned_cols=45  Identities=20%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ....++||++|+|. |.++..+++..+.++|.+++.+++-.+.+++
T Consensus        89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~  133 (308)
T PLN02366         89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKK  133 (308)
T ss_pred             CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence            35578999998755 5567778887777789999999887777776

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=90.61  E-value=0.81  Score=34.05  Aligned_cols=42  Identities=40%  Similarity=0.622  Sum_probs=34.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      |+++||-+|.|. |..++.+++. .++ +|++++.+++-++.+++
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~   43 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE   43 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence            578999998755 7778888884 566 89999999988888775

...

>PRK11761 cysM cysteine synthase B; Provisional

Probab=90.60  E-value=4.3  Score=36.42  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=46.8

Q ss_pred             HHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcCC
Q 023561          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      .+...+.+|++|+....|..|.+.+..++..|.+-++.+..  +++|.+.++.+|++-++...
T Consensus        55 ~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~  117 (296)
T PRK11761         55 EKRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPK  117 (296)
T ss_pred             HHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence            34445667788776666999999999999999966666653  45899999999998776553

>PRK12743 oxidoreductase; Provisional

Probab=90.56  E-value=1.6  Score=37.81  Aligned_cols=36  Identities=19%  Similarity=-0.034  Sum_probs=28.8

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CChhH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEK  238 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~~~  238 (280)
                      +++++|.|+ +++|...++.+...|+ +|+.+. ++.++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~   39 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEG   39 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHH
Confidence            578999998 9999999999988999 676664 34443

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=90.53  E-value=1.7  Score=37.59  Aligned_cols=40  Identities=20%  Similarity=0.119  Sum_probs=32.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .+++|||+|+ |.+|...+..+...|. +|+++.++.++.+.
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~   56 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKT   56 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHH
Confidence            4579999998 9999999888888898 78888887776543

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=90.53  E-value=0.79  Score=40.70  Aligned_cols=43  Identities=23%  Similarity=0.259  Sum_probs=37.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.|++++|+|+ .++|.+.+..+...|+ +|+++++++++.+..+
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~   49 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETA   49 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            46789999998 8999999999999999 8999999988765554

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=90.52  E-value=1.8  Score=40.78  Aligned_cols=53  Identities=25%  Similarity=0.337  Sum_probs=43.4

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHHcCC
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGV  247 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~-~~~~~Ga  247 (280)
                      ....--.+.++||+|+|-+|.+++..+...|.+.|++.-|+.+|.+ +++++|+
T Consensus       171 ~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~  224 (414)
T COG0373         171 RIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA  224 (414)
T ss_pred             HHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence            3334357899999999999999999999999889999999888765 4556884

>PRK07832 short chain dehydrogenase; Provisional

Probab=90.48  E-value=0.78  Score=40.15  Aligned_cols=38  Identities=21%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ++++|+|+ |++|...++.+...|+ +|+++++++++.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~   39 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQ   39 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            36899998 9999999988888999 78888888766443

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=90.40  E-value=0.89  Score=39.28  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .+++++|.|+ +++|...+..+...|+ +++.++++.++.+.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~   50 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH   50 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            4789999998 9999999988888999 78888877766543

>PRK06701 short chain dehydrogenase; Provisional

Probab=90.35  E-value=2.5  Score=37.54  Aligned_cols=38  Identities=32%  Similarity=0.143  Sum_probs=31.0

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ...+++++||.|+ |++|...+..+...|+ +|+.+++++
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            3445789999998 9999998888888899 788887764

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=90.25  E-value=1.8  Score=35.75  Aligned_cols=45  Identities=24%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh-------hHHHHHHHcCCc
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-------EKFEIGKRFGVT  248 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~-------~~~~~~~~~Ga~  248 (280)
                      ++||+|+ |++|...++.+...+..+++.+.++.       +.++.+++.|+.
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~   54 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGAR   54 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-E
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCc
Confidence            6899987 99999999998888888999999882       244555667774

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PRK08219 short chain dehydrogenase; Provisional

Probab=90.23  E-value=2  Score=35.98  Aligned_cols=40  Identities=20%  Similarity=0.166  Sum_probs=31.3

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .+++||+|+ |.+|...+..+... . +|++++++.++.+.+.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~   43 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELA   43 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHH
Confidence            368999998 99998877766666 6 7999998877765554

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=90.22  E-value=1.9  Score=37.14  Aligned_cols=83  Identities=17%  Similarity=0.140  Sum_probs=55.8

Q ss_pred             HHHcCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH----cCCcEEEcCCCCCCccHHHHHHHh
Q 023561          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQVLLSI  268 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~v~~~  268 (280)
                      ......+..++||=+|. .+|..++++|..+. -.+++.++.++++.+.+++    .|.+..+..-.  ..+..+.+.+.
T Consensus        52 ~~L~~~~~~k~iLEiGT-~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~--~gdal~~l~~~  128 (219)
T COG4122          52 RLLARLSGPKRILEIGT-AIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL--GGDALDVLSRL  128 (219)
T ss_pred             HHHHHhcCCceEEEeec-ccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe--cCcHHHHHHhc
Confidence            34455567788887774 45788899999887 3379999999999888864    77754322111  02455666553


Q ss_pred             cCCCceEEEec
Q 023561          269 YDLPLLTISVS  279 (280)
Q Consensus       269 ~~gg~~~v~~~  279 (280)
                      ..+.+|.|++|
T Consensus       129 ~~~~fDliFID  139 (219)
T COG4122         129 LDGSFDLVFID  139 (219)
T ss_pred             cCCCccEEEEe
Confidence            44578888876

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.12  E-value=1.4  Score=41.80  Aligned_cols=47  Identities=21%  Similarity=0.163  Sum_probs=36.1

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh----HHHHHHHcCCc
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~----~~~~~~~~Ga~  248 (280)
                      .+++++|+|.|.+|.+++.+++..|+ +|++.+.+..    ..+.+++.|..
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~   54 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIK   54 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCE
Confidence            46889999998899999999999999 8999886542    22344555654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.11  E-value=0.8  Score=44.93  Aligned_cols=47  Identities=13%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      ++++|.|.|.+|...++.++..|. +++++|.++++.+.+++.|...+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i  464 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAV  464 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEE
Confidence            688999999999999999999998 89999999999999988776444

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=90.08  E-value=1.4  Score=33.23  Aligned_cols=50  Identities=22%  Similarity=0.310  Sum_probs=39.0

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +.....+.++++|+-+|.|. |..+..+++..+...|+++|.++...+.++
T Consensus        11 ~~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   60 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE   60 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence            34556677888999999866 888888888875458999999988777654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=90.07  E-value=0.96  Score=39.37  Aligned_cols=41  Identities=32%  Similarity=0.409  Sum_probs=33.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+ +++|...+..+...|+ +|+.+++++++++.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~   50 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKG   50 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            5789999998 9999988887788899 788888887665443

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=90.02  E-value=1.6  Score=39.27  Aligned_cols=81  Identities=23%  Similarity=0.348  Sum_probs=47.8

Q ss_pred             eeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHH-cCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       156 ~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      |.+|..-....++++.+++.+-..    ....|.+ ++... ..+++|++||=+|.|. |.+++..+ .+|+++|+++|.
T Consensus       121 w~~~~~~~~~~~i~lDPGlAFGTG----~HpTT~l-cL~~Le~~~~~g~~vlDvGcGS-GILaIAa~-kLGA~~v~g~Di  193 (300)
T COG2264         121 WREYPEPSDELNIELDPGLAFGTG----THPTTSL-CLEALEKLLKKGKTVLDVGCGS-GILAIAAA-KLGAKKVVGVDI  193 (300)
T ss_pred             CccCCCCCCceEEEEccccccCCC----CChhHHH-HHHHHHHhhcCCCEEEEecCCh-hHHHHHHH-HcCCceEEEecC
Confidence            544432224566777777755432    2223333 23322 2356889998888743 66666544 468879999999


Q ss_pred             ChhHHHHHH
Q 023561          235 ISEKFEIGK  243 (280)
Q Consensus       235 ~~~~~~~~~  243 (280)
                      ++...+.++
T Consensus       194 Dp~AV~aa~  202 (300)
T COG2264         194 DPQAVEAAR  202 (300)
T ss_pred             CHHHHHHHH
Confidence            886544444

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.01  E-value=2.1  Score=36.75  Aligned_cols=47  Identities=26%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh----------hHHHHHHHcC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS----------EKFEIGKRFG  246 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~----------~~~~~~~~~G  246 (280)
                      -.|.+|+|.|-|.+|..+++++...|.+.|.++|.+.          +.++..++.+
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~   77 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALG   77 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC
Confidence            4689999999999999999999999996777778776          6666666544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.97  E-value=0.33  Score=46.04  Aligned_cols=59  Identities=12%  Similarity=0.079  Sum_probs=43.9

Q ss_pred             HcCCCCCCEEE----EECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc-EEEcCCC
Q 023561          196 TANVEVGSTVV----IFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKN  255 (280)
Q Consensus       196 ~~~~~~g~~Vl----I~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~-~vi~~~~  255 (280)
                      ..++++|+++|    |+|+ |++|.+++++++..|+ .|+++...+.+....+..+.+ .+++.+.
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~   92 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG   92 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC
Confidence            44667888887    7776 9999999999999999 888887666655444445555 4666654

>PLN03013 cysteine synthase

Probab=89.93  E-value=4.1  Score=38.64  Aligned_cols=60  Identities=20%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             HHHcCCCCCCEEEEEC-ccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcC
Q 023561          194 WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G-~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~  253 (280)
                      .+...+.+|.+.+|.. .|..|++.+..++.+|++-++++..  +++|+++++.+||+-++..
T Consensus       166 ~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~  228 (429)
T PLN03013        166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD  228 (429)
T ss_pred             HHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEEC
Confidence            3455667886655665 4999999999999999965555543  4679999999999866543

>PRK12937 short chain dehydrogenase; Provisional

Probab=89.91  E-value=3.3  Score=35.19  Aligned_cols=35  Identities=17%  Similarity=0.092  Sum_probs=28.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .++++++|+|+ |++|...+..+...|. +++.+.++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence            35789999998 9999999999998999 66666543

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.89  E-value=1.4  Score=38.48  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=26.7

Q ss_pred             CCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       201 ~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      ++++++|.|+   +++|.+.+..+...|+ +|+.+.+
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~   40 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYV   40 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEcc
Confidence            5789999994   5899998888888999 7777654

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=89.86  E-value=1.3  Score=36.29  Aligned_cols=46  Identities=30%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh-HHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~-~~~~~~~~Ga  247 (280)
                      ++++|.|+|-|.-|++.++-+|..|. +|++..+..+ ..+.+++-|.
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~~s~s~~~A~~~Gf   49 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLREGSASWEKAKADGF   49 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHHHHHTT-
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecCCCcCHHHHHHCCC
Confidence            57899999999999999999999999 6665555544 7888888775

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=89.77  E-value=0.9  Score=44.35  Aligned_cols=42  Identities=31%  Similarity=0.399  Sum_probs=36.0

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .+++++|+|+|++|.+++..+...|+ +|+++.++.+|.+.+.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la  419 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA  419 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            46899999999999999999999999 8999999877765553

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=89.73  E-value=1.7  Score=39.64  Aligned_cols=59  Identities=20%  Similarity=0.187  Sum_probs=47.9

Q ss_pred             HHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC---ChhHHHHHHHcCCcEEEcC
Q 023561          194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~---~~~~~~~~~~~Ga~~vi~~  253 (280)
                      .....+.+|+++||-.. |-+|...+.++...|. ++|++-.   +.+|...++.+|+..+..+
T Consensus        95 e~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~tp  157 (362)
T KOG1252|consen   95 EKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILTP  157 (362)
T ss_pred             HHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEecC
Confidence            44567899999999987 8999999999999999 5565543   4589999999999877654

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=89.67  E-value=2.2  Score=39.98  Aligned_cols=33  Identities=30%  Similarity=0.408  Sum_probs=24.9

Q ss_pred             CCCCEEEEECc-cHHHHH--HHHHHHHcCCCeEEEEcC
Q 023561          200 EVGSTVVIFGL-GSIGLA--VAEGARLCGATRIIGVDV  234 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~--a~~la~~~g~~~vi~~~~  234 (280)
                      ..++++||+|+ +++|++  .++.+ ..|+ +++++..
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~   74 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFF   74 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEec
Confidence            44589999998 899999  45555 7899 6677763

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.63  E-value=1.6  Score=37.99  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=28.2

Q ss_pred             CCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .+++++|.|+   +++|...+..+...|+ +|+.++++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~   42 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAG   42 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCc
Confidence            5789999997   4999998888888999 78887654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.60  E-value=0.92  Score=31.98  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=28.0

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +|+|+|+|.+|+-.+..++.+|. .|..+.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc
Confidence            57899999999999999999998 788887764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=89.57  E-value=0.69  Score=41.14  Aligned_cols=49  Identities=20%  Similarity=0.308  Sum_probs=34.6

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +.+.+++++|++||-+|.| -|.++..+++..|+ +|+++..+++..+.++
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~  102 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYAR  102 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence            6678899999999999975 35677788888899 8999999988877764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=89.57  E-value=3.2  Score=35.40  Aligned_cols=31  Identities=16%  Similarity=0.276  Sum_probs=26.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~  232 (280)
                      ++++++|+|+ |++|...++.+...|+ +++++
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~   33 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAG   33 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEE
Confidence            3688999998 9999999999999999 66664

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=89.48  E-value=2.3  Score=38.03  Aligned_cols=54  Identities=19%  Similarity=0.293  Sum_probs=44.2

Q ss_pred             HHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       189 a~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++..+.+.+++++|++||=+|.|- |.+++.+|+..|+ +|++++-+++..+.+++
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~  113 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK  113 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence            334467889999999999999754 6678888998899 99999999987777654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.40  E-value=1.2  Score=37.88  Aligned_cols=40  Identities=30%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~~~  242 (280)
                      ++++||+|+ |.+|...+..+...|+ +++++ ++++++.+.+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~   46 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQEL   46 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            578999998 9999998887778899 67777 8877665433

>CHL00194 ycf39 Ycf39; Provisional

Probab=89.32  E-value=1.1  Score=40.27  Aligned_cols=43  Identities=19%  Similarity=0.266  Sum_probs=34.2

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|+|+|+ |.+|...+..+...|. .|+++.++.++...+...|+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v   45 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGA   45 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCC
Confidence            6999998 9999999988888898 78888887666554444444

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=89.24  E-value=2.5  Score=36.37  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=37.1

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH--cCCc
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR--FGVT  248 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~--~Ga~  248 (280)
                      .++|+|+|.+|...++.+...|. .|++++.++++.+...+  ....
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~   47 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTH   47 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceE
Confidence            58899999999999999999999 89999999998777333  5543

>TIGR01138 cysM cysteine synthase B

Probab=89.22  E-value=5.5  Score=35.61  Aligned_cols=59  Identities=17%  Similarity=0.176  Sum_probs=44.8

Q ss_pred             HHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEc
Q 023561          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~  252 (280)
                      .+...+.++++|+....|..|.+.+..++.+|.+-++.+..  ++.|+++++.+|++-++.
T Consensus        51 ~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v  111 (290)
T TIGR01138        51 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILV  111 (290)
T ss_pred             HHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence            34445567777766556999999999999999966666654  357999999999976653

Alternate name: O-acetylserine (thiol)-lyase

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.19  E-value=1.1  Score=40.80  Aligned_cols=43  Identities=26%  Similarity=0.280  Sum_probs=36.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.|.+++|+|+ +++|..++.-+...|+ +|++..++.++.+.++
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~   76 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAK   76 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence            45689999998 9999999999999998 9999999986655554

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.11  E-value=1.1  Score=39.94  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ++|.|+|+|.+|...+..+...|. .|+++++++++++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~   41 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKN   41 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHH
Confidence            579999999999998888888899 89999999887654

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=88.99  E-value=2.7  Score=35.57  Aligned_cols=35  Identities=29%  Similarity=0.310  Sum_probs=28.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++++|.|+ |.+|...+..+...|+ +|+++.++.
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~   39 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASS   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4578999998 9999999999888999 665655544

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=88.88  E-value=1.2  Score=40.07  Aligned_cols=45  Identities=29%  Similarity=0.512  Sum_probs=38.3

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|.|.+|...+..++..|. ..|+++++++++.+.+++.|.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~   52 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL   52 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC
Confidence            579999999999998888888874 379999999988888877775

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.85  E-value=3.2  Score=37.10  Aligned_cols=55  Identities=13%  Similarity=0.042  Sum_probs=41.4

Q ss_pred             CCCCCEEEEECccH-HHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          199 VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       199 ~~~g~~VlI~G~g~-~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      .-.|++|+|+|.|. +|...+.++...|+ +|+++.+....+...- ..+|-+|+...
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~L~~~~-~~aDIvI~AtG  211 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQNLPELV-KQADIIVGAVG  211 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchhHHHHh-ccCCEEEEccC
Confidence            36789999999976 99999999999999 8888876443332211 46788887653

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.76  E-value=2.5  Score=36.25  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=28.0

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ++++|.|+ |++|...+..+...|+ +|+.+++..
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF-DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCc
Confidence            67999998 9999999888888899 788887653

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=88.72  E-value=2.4  Score=41.29  Aligned_cols=79  Identities=18%  Similarity=0.079  Sum_probs=49.1

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-----cCCcEEEcCCCCCCccHHHHHHHhcCC
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTEFVNSKNCGDKSVSQVLLSIYDL  271 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-----~Ga~~vi~~~~~~~~~~~~~v~~~~~g  271 (280)
                      +.-.|++|||.|+ |.+|.-.+.-....+.++++..++++.++-.++.     ++...+.-+-  .+-...+.+.+...+
T Consensus       246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~i--gdVrD~~~~~~~~~~  323 (588)
T COG1086         246 AMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYI--GDVRDRDRVERAMEG  323 (588)
T ss_pred             hHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEe--cccccHHHHHHHHhc
Confidence            3456899999998 9999876644444588899999999987665542     3422211100  012224455555556


Q ss_pred             -CceEEEe
Q 023561          272 -PLLTISV  278 (280)
Q Consensus       272 -g~~~v~~  278 (280)
                       ..|.|..
T Consensus       324 ~kvd~VfH  331 (588)
T COG1086         324 HKVDIVFH  331 (588)
T ss_pred             CCCceEEE
Confidence             6766654

>PRK07775 short chain dehydrogenase; Provisional

Probab=88.72  E-value=1.4  Score=38.66  Aligned_cols=39  Identities=23%  Similarity=0.130  Sum_probs=31.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      +.++++|+|+ |.+|...+..+...|+ +|+++.++.++.+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~   48 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCE   48 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            3468999998 9999999988888899 7888887766544

>PRK06523 short chain dehydrogenase; Provisional

Probab=88.71  E-value=0.86  Score=39.41  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      -+++++||.|+ |++|...++.+...|+ +|++++++++
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~   44 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRP   44 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChh
Confidence            35789999998 9999999988888899 7888887654

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.70  E-value=0.71  Score=41.70  Aligned_cols=44  Identities=27%  Similarity=0.340  Sum_probs=38.7

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      .+|.|+|+|.+|.-++.+|.-+|+ +|...+.+.+|++.+.. ++.
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~  213 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGG  213 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCc
Confidence            567778999999999999999999 89999999999998876 443

>PLN02565 cysteine synthase

Probab=88.68  E-value=5.3  Score=36.36  Aligned_cols=59  Identities=24%  Similarity=0.196  Sum_probs=44.0

Q ss_pred             HHHcCCCCCCEEEEEC-ccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEc
Q 023561          194 WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G-~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~  252 (280)
                      .+...+.+|.+.+|.. .|..|.+.+..++.+|.+-+|++..  +++|++.++.+|++-++.
T Consensus        58 ~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~  119 (322)
T PLN02565         58 EEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLT  119 (322)
T ss_pred             HHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEe
Confidence            3444557786655655 4999999999999999965555543  458999999999976553

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.61  E-value=1.2  Score=39.74  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=33.9

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++|.|+|+|.+|...++.+...|. .|++.++++++.+.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~   41 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ   41 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence            468999999999998888888898 8999999988766643

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=88.59  E-value=1.3  Score=44.31  Aligned_cols=53  Identities=23%  Similarity=0.230  Sum_probs=40.8

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh---------------------HHHHHHHcCCcEEEcC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNS  253 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~---------------------~~~~~~~~Ga~~vi~~  253 (280)
                      ..+++|+|+|+|+.|+.++..++..|. +|++++..+.                     ..+.++++|++..++.
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~  264 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNT  264 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            357899999999999999999999999 7888876532                     2455567887655544

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=88.57  E-value=0.98  Score=37.72  Aligned_cols=58  Identities=28%  Similarity=0.435  Sum_probs=40.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhc
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIY  269 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~  269 (280)
                      +|.|+|.|-+|+-.+..+...|. +|+++|.++++.+.+.+ |...+   .+   +...+.+++..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~-g~~p~---~E---~~l~~ll~~~~   59 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN-GELPI---YE---PGLDELLKENV   59 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT-TSSSS----C---TTHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh-ccccc---cc---cchhhhhcccc
Confidence            68899999999999999999999 99999999999988875 32222   22   55556666544

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=88.45  E-value=1.2  Score=41.92  Aligned_cols=39  Identities=28%  Similarity=0.492  Sum_probs=33.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      .+++++|.|+ |++|...+..+...|+ +|+++++++++++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4789999998 9999999988888899 8888888776654

>PRK11823 DNA repair protein RadA; Provisional

Probab=88.40  E-value=3.7  Score=39.23  Aligned_cols=79  Identities=18%  Similarity=0.210  Sum_probs=40.4

Q ss_pred             cCCCCCCEEEEECccHHH--HHHHHHHHH---cCCCeEEEEcCChhHHH---HHHHcCC--cEEEcCCCCCCccHHHHHH
Q 023561          197 ANVEVGSTVVIFGLGSIG--LAVAEGARL---CGATRIIGVDVISEKFE---IGKRFGV--TEFVNSKNCGDKSVSQVLL  266 (280)
Q Consensus       197 ~~~~~g~~VlI~G~g~~G--~~a~~la~~---~g~~~vi~~~~~~~~~~---~~~~~Ga--~~vi~~~~~~~~~~~~~v~  266 (280)
                      ..+.+|..++|.|..++|  .++.|++..   .|. +++-++..+...+   .++.+|.  +.+....+   .++.+.+.
T Consensus        75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~-~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e---~~l~~i~~  150 (446)
T PRK11823         75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGG-KVLYVSGEESASQIKLRAERLGLPSDNLYLLAE---TNLEAILA  150 (446)
T ss_pred             CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEEccccHHHHHHHHHHcCCChhcEEEeCC---CCHHHHHH
Confidence            368889999999874444  445555553   255 5555554433222   2445775  22322222   33333333


Q ss_pred             HhcCCCceEEEec
Q 023561          267 SIYDLPLLTISVS  279 (280)
Q Consensus       267 ~~~~gg~~~v~~~  279 (280)
                      .+...+.+.+++|
T Consensus       151 ~i~~~~~~lVVID  163 (446)
T PRK11823        151 TIEEEKPDLVVID  163 (446)
T ss_pred             HHHhhCCCEEEEe
Confidence            3322356666666

>PLN02823 spermine synthase

Probab=88.38  E-value=2.1  Score=39.35  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ..++|||+|+|. |..+..+++..+.++|++++.+++-.+++++
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~  145 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRK  145 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence            457899998753 5566677787777799999999999998887

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=88.38  E-value=3.2  Score=38.81  Aligned_cols=40  Identities=23%  Similarity=0.231  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .-..+.+|||+|+ |.+|...+..+...|. .|+++.++.++
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~   96 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG   96 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence            3456789999998 9999999988888898 88888887654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=88.38  E-value=1.6  Score=35.29  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=35.7

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +|.|+|+|..|.+.+..+...|. +|....++++..+.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~   40 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINE   40 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHH
Confidence            58899999999999999999997 99999999888777765

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=88.33  E-value=0.97  Score=42.02  Aligned_cols=44  Identities=25%  Similarity=0.359  Sum_probs=36.3

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC-h-------------hHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI-S-------------EKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~-~-------------~~~~~~~~~Ga  247 (280)
                      -.|+|.|+|+.|++++.+++..|. +|.++++. +             ..++.++++|+
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~   60 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGL-DVTLLERAPRELLERGRGIALSPNALRALERLGL   60 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence            458999999999999999999998 89999886 1             23666777776

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.29  E-value=1.4  Score=39.21  Aligned_cols=43  Identities=19%  Similarity=0.272  Sum_probs=35.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|+|+|+|.+|...+..+...|. .|+.+++++++.+.+++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~   44 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGL   44 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCC
Confidence            58999999999988887777887 79999987787777776554

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=88.24  E-value=1  Score=39.40  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+.+-.+++|+|+|.++...+++|+.+|+ +|+++|..++
T Consensus        96 ~~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~  134 (246)
T TIGR02964        96 EAPPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA  134 (246)
T ss_pred             ccCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence            35677899999999999999999999999 8888886544

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=88.23  E-value=0.95  Score=39.07  Aligned_cols=46  Identities=24%  Similarity=0.328  Sum_probs=39.1

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +..+=+.|.|+|+|.+|.-.+|++...|. +|..++.+++.+..+++
T Consensus         7 ~~~~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~~   52 (298)
T KOG2304|consen    7 NMAEIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRATK   52 (298)
T ss_pred             ccccccceEEEcccccchhHHHHHHhcCC-ceEEecCCHHHHHHHHH
Confidence            34455789999999999999999999999 89999999887776643

>PRK08278 short chain dehydrogenase; Provisional

Probab=88.23  E-value=2.6  Score=36.93  Aligned_cols=36  Identities=39%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+++++|+|+ |++|...+..+...|+ +|++++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence            4689999998 9999999988888899 8888887653

>TIGR01136 cysKM cysteine synthases

Probab=88.21  E-value=8.4  Score=34.49  Aligned_cols=59  Identities=19%  Similarity=0.254  Sum_probs=44.5

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcC
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +.....+|++|+-...|..|.+.+..++..|.+-++.+..  ++.|++.++.+|++-++..
T Consensus        51 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~  111 (299)
T TIGR01136        51 KRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTP  111 (299)
T ss_pred             HcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeC
Confidence            3444567777754455999999999999999976666654  3578999999999866543

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=88.19  E-value=1.6  Score=39.37  Aligned_cols=40  Identities=28%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~  242 (280)
                      +++++|.|+ +++|...+..+...| . +|+.+++++++.+.+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~   44 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQA   44 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHH
Confidence            678999998 999999888888889 7 888888887766544

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=88.13  E-value=1.4  Score=40.14  Aligned_cols=47  Identities=32%  Similarity=0.396  Sum_probs=36.6

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      -.|++|.|+|-|.+|...++.++..|+ +|++..+.....+.++..|+
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~   60 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF   60 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence            457999999999999999999999999 78777655444445554454

>PRK13984 putative oxidoreductase; Provisional

Probab=88.12  E-value=1.6  Score=43.16  Aligned_cols=54  Identities=22%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh---------------------hHHHHHHHcCCcEEEcC
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS---------------------EKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~---------------------~~~~~~~~~Ga~~vi~~  253 (280)
                      .+.++.|+|+|+|+.|+.++..++..|. +|++++..+                     ...+.++++|++.+++.
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~  354 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT  354 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence            4568899999999999999999999999 788886543                     13456677888665553

>PRK14982 acyl-ACP reductase; Provisional

Probab=88.10  E-value=1.5  Score=40.32  Aligned_cols=45  Identities=24%  Similarity=0.266  Sum_probs=36.0

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .-.+++|+|+|+ |.+|..+++.+.. .|..+++.+.++.+++..+.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La  198 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ  198 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence            346789999998 9999988877764 57778999999887776654

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.98  E-value=1.3  Score=42.13  Aligned_cols=46  Identities=35%  Similarity=0.466  Sum_probs=36.7

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+++|+|+|.|..|..++.+++..|+ .|.+.|........+++.|+
T Consensus         8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~~~l~~~g~   53 (460)
T PRK01390          8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASRAKAAAAGI   53 (460)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCChhhHHHHHhcCc
Confidence            36789999999999999999999999 89999976544444555565

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=87.94  E-value=1.5  Score=43.77  Aligned_cols=48  Identities=25%  Similarity=0.417  Sum_probs=42.6

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      .++|+|.|.|.+|...++.++..|. .++++|.++++.+.+++.|...+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~  447 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVF  447 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEE
Confidence            3689999999999999999999999 89999999999999998886433

>PRK05855 short chain dehydrogenase; Validated

Probab=87.91  E-value=2.3  Score=41.25  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=34.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+.++||+|+ |++|...++.+...|+ +|+.++++.++++.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~  355 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT  355 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999998 9999998888888999 799999987766543

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=87.88  E-value=2.4  Score=36.92  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=26.8

Q ss_pred             CCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       201 ~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      .+++++|.|+   +++|...+..+...|+ +|+.+.+
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~   40 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYL   40 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEec
Confidence            5789999996   4899998888888999 6776643

>TIGR02415 23BDH acetoin reductases

Probab=87.87  E-value=1.6  Score=37.48  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ++++|.|+ |++|...++.+...|+ +|+.+++++++.+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~   38 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAK   38 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            47899998 9999999988888999 7888888765543

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07985 oxidoreductase; Provisional

Probab=87.87  E-value=2.3  Score=37.87  Aligned_cols=35  Identities=20%  Similarity=0.062  Sum_probs=29.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -++++++|.|+ |++|...++.+...|+ +|+++.++
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~   82 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP   82 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence            35689999998 9999999988888999 78777653

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=87.86  E-value=0.49  Score=37.53  Aligned_cols=33  Identities=42%  Similarity=0.557  Sum_probs=27.2

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ++|+|+|.++...+++++.+|+ +|++++..+++
T Consensus         1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e~   33 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPER   33 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTE-EEEEEES-CCC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCccc
Confidence            4788999999999999999999 88888877653

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=87.86  E-value=1.2  Score=39.91  Aligned_cols=37  Identities=19%  Similarity=0.083  Sum_probs=30.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .|++|||+|+ |.+|...+..+...|. +|+++.++.++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   41 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTD   41 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence            4789999998 9999998888888898 78777666543

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=87.86  E-value=2.6  Score=30.19  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=29.8

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      .++++++|+|.|.+|...++.+...+...+.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            56789999999999999999998886557888876

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=87.84  E-value=1.6  Score=39.88  Aligned_cols=39  Identities=18%  Similarity=0.045  Sum_probs=32.2

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      ..+.+|||+|+ |.+|...++.+...|. +|++++++.++.
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~   47 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKS   47 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHH
Confidence            45689999998 9999999998888898 788887765543

>PLN02686 cinnamoyl-CoA reductase

Probab=87.83  E-value=1.5  Score=40.55  Aligned_cols=44  Identities=18%  Similarity=0.055  Sum_probs=34.2

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ...+++|||+|+ |.+|...+..+...|. +|+++.++.++.+.++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~   94 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLR   94 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            355789999998 9999999998888999 7877666655544433

>PRK06141 ornithine cyclodeaminase; Validated

Probab=87.82  E-value=2.5  Score=38.34  Aligned_cols=46  Identities=13%  Similarity=0.037  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHH
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~-~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .-...++++|+|+|..|...+..+. ..+.++|.+..++.+|.+.+.
T Consensus       121 a~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a  167 (314)
T PRK06141        121 ARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA  167 (314)
T ss_pred             CCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            3356789999999999998876444 467779999999988755543

>PRK09135 pteridine reductase; Provisional

Probab=87.81  E-value=1.8  Score=36.81  Aligned_cols=34  Identities=24%  Similarity=0.172  Sum_probs=29.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .++++||+|+ |.+|...+..+...|+ +|++++++
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~   39 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHR   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4689999998 9999998888888899 78888875

>PLN02583 cinnamoyl-CoA reductase

Probab=87.78  E-value=1.4  Score=39.21  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=29.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .++++|||+|+ |.+|...+..+...|. +|+++.++
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~-~V~~~~R~   39 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGY-TVHAAVQK   39 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEEcC
Confidence            34678999998 9999999998888999 78888774

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.76  E-value=4.2  Score=36.44  Aligned_cols=71  Identities=14%  Similarity=0.104  Sum_probs=47.4

Q ss_pred             ccchhhHHHHHHHHHHcC-CCCCCEEEEECccH-HHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~-~~~g~~VlI~G~g~-~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      .++|+....+. +++..+ --.|++++|+|.|. +|.-.+.++...|+ +|+++.+....++.. -..+|-+|+.-
T Consensus       137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~l~~~-~~~ADIVIsAv  209 (286)
T PRK14175        137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKDMASY-LKDADVIVSAV  209 (286)
T ss_pred             CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchhHHHH-HhhCCEEEECC
Confidence            45665555555 444444 35789999999955 99999999999999 788887654333221 14456666543

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=87.74  E-value=2.3  Score=42.85  Aligned_cols=41  Identities=24%  Similarity=0.221  Sum_probs=34.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...++.+...|+ +|++++++.++.+..
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~  454 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV  454 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            4689999998 9999999988888899 899999887765544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=87.70  E-value=3.5  Score=37.19  Aligned_cols=45  Identities=11%  Similarity=-0.040  Sum_probs=36.1

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -....+++|+|+|..|...+..+.. .+.++|.+.+++.+|.+.+.
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a  167 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFC  167 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            3566899999999999998887764 78888999999988755443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.67  E-value=1.5  Score=43.50  Aligned_cols=47  Identities=17%  Similarity=0.321  Sum_probs=42.0

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      ++|+|.|.|.+|...++.++..|. .++++|.++++.+.+++.|...+
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~  447 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVY  447 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEE
Confidence            689999999999999999999999 89999999999999998886433

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.66  E-value=2.2  Score=40.93  Aligned_cols=50  Identities=20%  Similarity=0.213  Sum_probs=38.8

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHHcCCc
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVT  248 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~-~~~~~Ga~  248 (280)
                      ..-.+++|+|+|.|..|.+++.+++..|+ .|++.|++..+.. +++++|+.
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi~   61 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGVA   61 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCcE
Confidence            34456789999999999999999999999 8999997655443 34556664

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=87.64  E-value=1.6  Score=38.80  Aligned_cols=43  Identities=28%  Similarity=0.349  Sum_probs=36.6

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|.|+|.|.+|...+..++..|. .|+++++++++.+.+.+.|.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~   44 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL   44 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC
Confidence            58899999999988888887888 89999999988888877664

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=87.61  E-value=7.5  Score=36.15  Aligned_cols=58  Identities=21%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             HHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEc
Q 023561          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~  252 (280)
                      +...+.+|.+.+|... |..|++.+..++.+|.+-++++..  +.+|++.++.+|++-++.
T Consensus       103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~  163 (368)
T PLN02556        103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLT  163 (368)
T ss_pred             HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEE
Confidence            4555778876667665 999999999999999965555543  468999999999987654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.57  E-value=1.6  Score=38.85  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=32.7

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+|.|+|+|.+|...++.+...|. +|+.+++++++++.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~   42 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKA   42 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHH
Confidence            479999999999998888888888 899999988765544

>PRK01581 speE spermidine synthase; Validated

Probab=87.54  E-value=3.4  Score=38.34  Aligned_cols=45  Identities=24%  Similarity=0.237  Sum_probs=35.6

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ....++|||+|+| .|.++..+++..+..+|++++.+++-.+.+++
T Consensus       148 h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        148 VIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence            3455799999865 46677777777666799999999998998886

>PLN03139 formate dehydrogenase; Provisional

Probab=87.53  E-value=1.4  Score=41.28  Aligned_cols=45  Identities=24%  Similarity=0.300  Sum_probs=35.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++.....+..++.|
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g  242 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETG  242 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcC
Confidence            57899999999999999999999999 8899987643333333444

>PRK05650 short chain dehydrogenase; Provisional

Probab=87.53  E-value=1.6  Score=38.07  Aligned_cols=38  Identities=32%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ++++|+|+ |++|...+..+...|. +|+.++++.++.+.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~   39 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEE   39 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            36899998 9999998888888899 78888888766543

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=87.51  E-value=1.6  Score=37.83  Aligned_cols=39  Identities=28%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CChhHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKF  239 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~~~~  239 (280)
                      -++++++|.|+ +++|...+..+...|+ +|+.+. +++++.
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~   46 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEA   46 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            35789999998 9999999988888999 677664 344443

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=87.47  E-value=2.1  Score=34.65  Aligned_cols=44  Identities=27%  Similarity=0.311  Sum_probs=36.6

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.++|.|.+|...+.-+...|. +|.+.++++++.+.+.+.|+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~   45 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGA   45 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhh
Confidence            368899999999998888888999 89999999999988887774

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK06924 short chain dehydrogenase; Provisional

Probab=87.43  E-value=3.2  Score=35.56  Aligned_cols=39  Identities=21%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh-hHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~-~~~~~~  242 (280)
                      ++++|+|+ |++|...++.+...|+ +|+++++++ ++++.+
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~~~~~~~~   42 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTENKELTKL   42 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCchHHHHHH
Confidence            47899998 9999998888888899 788888876 444433

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=87.29  E-value=2.3  Score=40.78  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=30.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +.+++|+|+|+|+.|+.++..++..|. +|++++..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~  175 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA  175 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            456899999999999999999999999 78888754

>TIGR01139 cysK cysteine synthase A

Probab=87.21  E-value=7.9  Score=34.61  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=44.4

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcCC
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      +...+.+|++|+-..+|..|.+.+..++..|.+-.+.+..  ++.|+++++.+|++-++...
T Consensus        50 ~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~  111 (298)
T TIGR01139        50 KRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPG  111 (298)
T ss_pred             HcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECC
Confidence            4444567777644445999999999999999965566654  35689999999997666543

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=87.20  E-value=0.99  Score=40.46  Aligned_cols=32  Identities=28%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|+|+|+|+.|++++.+++..|. .|+++++.+
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~   34 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGI-DVTIIERRP   34 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhccc-ccccchhcc
Confidence            48899999999999999999999 899998864

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05599 hypothetical protein; Provisional

Probab=87.13  E-value=3.7  Score=35.39  Aligned_cols=38  Identities=16%  Similarity=0.073  Sum_probs=29.6

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++|.|+ +++|...+..+. .|. +|+.+++++++++.+
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~-~Vil~~r~~~~~~~~   39 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE-DVVLAARRPEAAQGL   39 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC-EEEEEeCCHHHHHHH
Confidence            36899998 999988776655 487 888888888776544

>PRK08618 ornithine cyclodeaminase; Validated

Probab=87.13  E-value=3.1  Score=37.85  Aligned_cols=46  Identities=17%  Similarity=0.048  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEECccHHHHHHHHH-HHHcCCCeEEEEcCChhHHHHHH
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEG-ARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~l-a~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ..+..++++|+|+|..|...+.. +...+++.|.+++++++|.+.+.
T Consensus       123 a~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~  169 (325)
T PRK08618        123 AREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA  169 (325)
T ss_pred             cCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence            33566899999999999877654 44678889999999988765443

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=87.05  E-value=0.76  Score=34.39  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|++|||+|+|.+|..-++.+...|+ +|+++....
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence            57899999999999999999999999 888887763

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=87.01  E-value=1.2  Score=38.72  Aligned_cols=37  Identities=24%  Similarity=0.457  Sum_probs=31.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .+++++|.|+ |++|...+..+...|+ +|+.+++++++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~   45 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGD   45 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            4689999998 9999999998888999 78888776543

>PRK07201 short chain dehydrogenase; Provisional

Probab=87.00  E-value=2.4  Score=42.14  Aligned_cols=40  Identities=30%  Similarity=0.289  Sum_probs=34.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++|+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~  411 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL  411 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            678999998 9999999888888899 899999988775544

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.00  E-value=2  Score=35.70  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=38.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .|..|++.|+ -++|...++-+...|+ .||++.++++.+..+-+.
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e   50 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKE   50 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhh
Confidence            5789999998 6899999999999999 899999999887776553

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=86.93  E-value=1.5  Score=40.01  Aligned_cols=37  Identities=22%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ++++|||.|+ |.+|...+..+...|. +|++++++...
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~   40 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPT   40 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCcc
Confidence            4789999998 9999999999988998 78888876543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=86.92  E-value=3.4  Score=35.22  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=26.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      .+++++|.|+ |++|...+..+...|+ +|+++.+
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~-~v~~~~~   38 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGA-KVVINYN   38 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEcC
Confidence            4789999998 9999999888888899 6665543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.87  E-value=1.9  Score=39.34  Aligned_cols=38  Identities=21%  Similarity=0.196  Sum_probs=32.8

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ++|.|+|+|.+|...++.+...|. .|++.+.+++.++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~   45 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA   45 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence            689999999999998888888999 89999998765443

>PRK07574 formate dehydrogenase; Provisional

Probab=86.83  E-value=1.7  Score=40.72  Aligned_cols=35  Identities=34%  Similarity=0.369  Sum_probs=31.9

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++..
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~  225 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHR  225 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence            46899999999999999999999999 899999865

>PRK12746 short chain dehydrogenase; Provisional

Probab=86.83  E-value=1.8  Score=37.14  Aligned_cols=38  Identities=21%  Similarity=0.130  Sum_probs=29.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEE-EcCChhHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKF  239 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~-~~~~~~~~  239 (280)
                      .+++++|.|+ |++|...++.+...|. +|++ ..+++++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~   44 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAA   44 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            4689999998 9999999988888898 6655 45666554

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=86.76  E-value=4.1  Score=38.22  Aligned_cols=59  Identities=20%  Similarity=0.220  Sum_probs=41.4

Q ss_pred             hhhhcccchhhHHHHHHHHHHcCC-CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~-~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      ..+|....+.+.+-  .+...... -+|.+|.|.|-|.+|..+++.+...|+ +|++++.+..
T Consensus       182 r~~aTg~Gv~~~~~--~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         182 RSEATGYGVFYAIR--EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             CCcccceehHHHHH--HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            34555555443333  23444454 589999999999999999999999999 6666665543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=86.71  E-value=1.4  Score=40.97  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=27.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|+|+|+|+.|++++..+...|. +|++++..+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGL-EVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            58999999999998888888898 899988654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=86.64  E-value=6.7  Score=33.75  Aligned_cols=77  Identities=16%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             HHHHcCCCCCCEEEEE-CccHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcC
Q 023561          193 AWRTANVEVGSTVVIF-GLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYD  270 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~-G~g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~  270 (280)
                      .++.+.+..=+.+++. |..-+-+.++++++. .|..++++-.++++..+.++++|+++++++..    .....+.+...
T Consensus        58 ~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~----~~~~~l~~~i~  133 (225)
T COG0569          58 VLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEK----LAAKRLARLIV  133 (225)
T ss_pred             HHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHH----HHHHHHHHHhc
Confidence            4566677777776554 667888889999977 89989999999999999999999999998873    56666666544


Q ss_pred             C-Cc
Q 023561          271 L-PL  273 (280)
Q Consensus       271 g-g~  273 (280)
                      . +.
T Consensus       134 ~p~~  137 (225)
T COG0569         134 TPGA  137 (225)
T ss_pred             CCCh
Confidence            4 43

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=86.63  E-value=2.2  Score=36.90  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      |+.+++.|+ |++|+.....+...|+ .+.+++-+.|+.+...++-
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgi-k~~~i~~~~En~~a~akL~   49 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGI-KVLVIDDSEENPEAIAKLQ   49 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCc-hheeehhhhhCHHHHHHHh
Confidence            889999987 9999999988888999 4555555556555555543

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=86.62  E-value=1.4  Score=30.33  Aligned_cols=29  Identities=31%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             EECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          207 IFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       207 I~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      |+|+|..|+.++..++..|. +|.++++.+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCc
Confidence            67999999999999998999 999998765

...

>PRK12747 short chain dehydrogenase; Provisional

Probab=86.61  E-value=2.2  Score=36.65  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=29.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CChhHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKF  239 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~~~~  239 (280)
                      .+++++|+|+ +++|...++.+...|+ +|+++. +.+++.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~   42 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEA   42 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHH
Confidence            4789999998 9999999998888999 676653 444443

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=86.60  E-value=3.6  Score=39.64  Aligned_cols=41  Identities=22%  Similarity=0.212  Sum_probs=35.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+|++|.+++..+...|+ ++++.+++.++.+.+
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  371 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEAL  371 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            56899999999999999999999999 888888887776554

>TIGR00438 rrmJ cell division protein FtsJ

Probab=86.58  E-value=4.9  Score=33.24  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=43.9

Q ss_pred             HcCCCCCCEEEEECccHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-Cc
Q 023561          196 TANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PL  273 (280)
Q Consensus       196 ~~~~~~g~~VlI~G~g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~  273 (280)
                      ...+++|++||.+|+|.-++ +..+++. .+..+|+++|.++.+    ...++. ++..+- .+....+.+++..+. ++
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~-~~~l~~~~~~~~~v~~vDis~~~----~~~~i~-~~~~d~-~~~~~~~~l~~~~~~~~~   99 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGW-SQVAVEQVGGKGRVIAVDLQPMK----PIENVD-FIRGDF-TDEEVLNKIRERVGDDKV   99 (188)
T ss_pred             hcccCCCCEEEEecCCCCHH-HHHHHHHhCCCceEEEEeccccc----cCCCce-EEEeeC-CChhHHHHHHHHhCCCCc
Confidence            34568999999999866444 4444443 344479999988754    123443 332221 114445566665655 67


Q ss_pred             eEEEe
Q 023561          274 LTISV  278 (280)
Q Consensus       274 ~~v~~  278 (280)
                      |.|..
T Consensus       100 D~V~~  104 (188)
T TIGR00438       100 DVVMS  104 (188)
T ss_pred             cEEEc
Confidence            66653

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=86.57  E-value=1.6  Score=34.11  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=29.9

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..+|+|+|+|++|...+..+...|..+++.+|.+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            3689999999999999999999999999999865

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06849 hypothetical protein; Provisional

Probab=86.53  E-value=3.6  Score=38.28  Aligned_cols=72  Identities=22%  Similarity=0.180  Sum_probs=46.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE--Ec-CCCCCCccHHHHHHHhcCC-CceE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF--VN-SKNCGDKSVSQVLLSIYDL-PLLT  275 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v--i~-~~~~~~~~~~~~v~~~~~g-g~~~  275 (280)
                      ...+|||+|+ .+.|+..+..++..|. +|++++..+...... +..+++.  +. ++. +++.+.+.+.++... +++.
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~-s~~~d~~~~~p~p~~-d~~~~~~~L~~i~~~~~id~   79 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRF-SRAVDGFYTIPSPRW-DPDAYIQALLSIVQRENIDL   79 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHH-HHhhhheEEeCCCCC-CHHHHHHHHHHHHHHcCCCE
Confidence            4589999998 6789999999999999 899998775443321 1222322  21 221 224566777776544 5543

>PLN02928 oxidoreductase family protein

Probab=86.48  E-value=1.5  Score=40.47  Aligned_cols=34  Identities=32%  Similarity=0.615  Sum_probs=31.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .|+++.|+|.|.+|...++.++.+|+ +|++++++
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~  191 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS  191 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            47899999999999999999999999 89999875

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=86.45  E-value=2.9  Score=30.28  Aligned_cols=43  Identities=30%  Similarity=0.408  Sum_probs=33.8

Q ss_pred             EEEEECccHHHHHHHHHHHHcC---CCeEE-EEcCChhHHHHHH-HcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCG---ATRII-GVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g---~~~vi-~~~~~~~~~~~~~-~~Ga  247 (280)
                      +|.|+|.|.+|.+.+.-+...|   . +|+ +..+++++.+.+. ++++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~   48 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGV   48 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcc
Confidence            4778899999999888888888   5 676 5489998887774 4664

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=86.37  E-value=0.65  Score=38.06  Aligned_cols=70  Identities=20%  Similarity=0.265  Sum_probs=40.9

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH----cCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEEec
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTISVS  279 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~~  279 (280)
                      +++.+-+++|--++|+|+.  +.+|++++.++.|.+.++.    +|...-++.-.   .++.+.+.++... .+|.|++|
T Consensus         2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~---gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFIC---GDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEE---S-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEe---CCHHHHHhhccccccccEEEEC
Confidence            4566667778899999998  4589999999999999974    77532112222   4566666555433 24666543

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=86.36  E-value=2.9  Score=35.73  Aligned_cols=35  Identities=40%  Similarity=0.474  Sum_probs=30.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +++++||+|+ |.+|...+..+...|. +|++++++.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence            4689999998 9999999988888899 888888765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=86.18  E-value=1.5  Score=38.25  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=31.1

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..+|+|.|+|++|..++..+..+|..+++.+|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            37899999999999999999999999999988753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=86.15  E-value=1.7  Score=39.01  Aligned_cols=37  Identities=19%  Similarity=0.113  Sum_probs=30.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .++++||+|+ |.+|...+..+...|. .|+++.++.++
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~   41 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKD   41 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcc
Confidence            4789999998 9999999988888899 77777666543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.11  E-value=4.6  Score=38.18  Aligned_cols=45  Identities=22%  Similarity=0.121  Sum_probs=39.0

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      ...++++|+|.|.+|...++.+...|. .|++++.++++.+.+++.
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~  273 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEE  273 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence            346889999999999999999998899 899999999988877764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=86.11  E-value=1.5  Score=40.05  Aligned_cols=47  Identities=26%  Similarity=0.272  Sum_probs=35.0

Q ss_pred             HHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       188 ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      |+|--+... -..++++|||+|+ |.+|...+..+...|. .|+++++..
T Consensus         2 ~~~~~~~~~-~~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~   49 (348)
T PRK15181          2 TAYEELRTK-LVLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS   49 (348)
T ss_pred             chhhhhhhc-ccccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            455533222 3345579999998 9999999999988898 888888643

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=86.10  E-value=2.6  Score=40.67  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=29.8

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..+++|+|+|+|+.|+.++..++..|. .|++++..
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~  175 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERE  175 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecC
Confidence            356899999999999999999999998 67777643

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=86.05  E-value=3.9  Score=34.74  Aligned_cols=36  Identities=17%  Similarity=-0.009  Sum_probs=27.9

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEE-EcCChhHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKF  239 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~-~~~~~~~~  239 (280)
                      ++++|+|+ |++|...+..+...|+ +|++ ..+++++.
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~-~v~~~~~~~~~~~   39 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY-TVAVNYQQNLHAA   39 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCChHHH
Confidence            47899998 9999999988888899 6655 45555543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=86.02  E-value=3.2  Score=35.42  Aligned_cols=59  Identities=25%  Similarity=0.326  Sum_probs=38.8

Q ss_pred             cchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHH
Q 023561          182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGK  243 (280)
Q Consensus       182 l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~~~~~~~~~~~  243 (280)
                      ++.+...|.  +.+.+.+++|++||-+|+|. |..++-+++..|.. .|+.++..++-.+.++
T Consensus        55 is~P~~~a~--~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~  114 (209)
T PF01135_consen   55 ISAPSMVAR--MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERAR  114 (209)
T ss_dssp             E--HHHHHH--HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred             chHHHHHHH--HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence            343444443  56788899999999999754 77888888887754 5899998876544443

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=86.02  E-value=2.3  Score=35.99  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=28.3

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEK  238 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~  238 (280)
                      +++||+|+ |++|...+..+...|+ +++++.+ ++++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~   37 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEER   37 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHH
Confidence            47899998 9999999988888999 7777766 4443

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK14967 putative methyltransferase; Provisional

Probab=85.99  E-value=3.7  Score=35.07  Aligned_cols=48  Identities=21%  Similarity=0.278  Sum_probs=37.2

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ....++++++||-.|+|. |..++.+++. +..++++++.+++.++.+++
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~   77 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL   77 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence            445678889999999876 8888888775 55589999999887765543

>PLN02778 3,5-epimerase/4-reductase

Probab=85.98  E-value=3  Score=37.37  Aligned_cols=53  Identities=17%  Similarity=0.023  Sum_probs=37.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH----HHHHHHcCCcEEEcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK----FEIGKRFGVTEFVNSK  254 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~----~~~~~~~Ga~~vi~~~  254 (280)
                      ...+|||+|+ |.+|...++.+...|. .|+.....-..    ...++..+.+.||+..
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~A   65 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYGSGRLENRASLEADIDAVKPTHVFNAA   65 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC-EEEEecCccCCHHHHHHHHHhcCCCEEEECC
Confidence            3468999998 9999999999998998 66654332222    2233456788888654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=85.95  E-value=1.6  Score=36.89  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ...+|+|+|.|++|...++.+..+|..+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            35789999999999999999999999999999876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=85.85  E-value=2.1  Score=34.78  Aligned_cols=32  Identities=34%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEc
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      .|++|+|+|+|.+|.--++.+...|+ .|++++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence            57899999999999988888888899 777774

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=85.76  E-value=3.3  Score=34.64  Aligned_cols=53  Identities=26%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----HcCCc
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT  248 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~----~~Ga~  248 (280)
                      ..+++++|+.++=+|+|. |..++++++.....+|+++++++++++..+    +||.+
T Consensus        28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~   84 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD   84 (187)
T ss_pred             HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC
Confidence            467889999887778754 667788886665669999999999887775    48876

>PRK06753 hypothetical protein; Provisional

Probab=85.72  E-value=1.2  Score=40.77  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=28.2

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|+|+|+|+.|++++..++..|. +|+++++.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~   33 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNE   33 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            58999999999999998998999 788888664

>PRK08328 hypothetical protein; Provisional

Probab=85.68  E-value=1.6  Score=37.75  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=30.6

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +.+|+|+|+|++|..++..+..+|..+++.+|.+
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4789999999999999999999999999999854

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=85.67  E-value=7.8  Score=30.45  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      ++++|.|+ |++|...+..+...|...|+.+.++++
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~   36 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGP   36 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCC
Confidence            36889998 999999888888888756777766543

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.67  E-value=4.5  Score=35.10  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             CCCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -.+++++|.|+   +++|...+..+...|+ +|+.++++
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~   42 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFG   42 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCc
Confidence            35789999985   6999998888888999 78888765

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.56  E-value=5.8  Score=33.80  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=26.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      .++++||.|+ |.+|...+..+...|+ +++.+.
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~   37 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNA   37 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            3689999998 9999998888888999 565554

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.56  E-value=2.4  Score=37.78  Aligned_cols=39  Identities=28%  Similarity=0.495  Sum_probs=33.3

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+|.|+|+|.+|...+..+...|. .|++.++++++++.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~   43 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAG   43 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            579999999999998888888898 899999998776553

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=85.56  E-value=2.1  Score=38.23  Aligned_cols=42  Identities=12%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|+|+|+|.+|.+.+..+...|. .|+.+++ +++.+.+++.|.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~   43 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGL   43 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCe
Confidence            58999999999987777777787 7888888 777777776553

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.52  E-value=2.4  Score=38.16  Aligned_cols=40  Identities=23%  Similarity=0.414  Sum_probs=33.4

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .+|.|+|+|.+|...+..+...|. .|+++++++++.+.++
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~   44 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERAR   44 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHH
Confidence            579999999999988888888898 8999999887766554

>PRK13243 glyoxylate reductase; Reviewed

Probab=85.50  E-value=2.4  Score=38.84  Aligned_cols=36  Identities=39%  Similarity=0.516  Sum_probs=32.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++..+
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  184 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK  184 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC
Confidence            57899999999999999999999999 8999987643

>PRK08163 salicylate hydroxylase; Provisional

Probab=85.45  E-value=1.4  Score=40.88  Aligned_cols=34  Identities=26%  Similarity=0.250  Sum_probs=29.5

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ...|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCc
Confidence            3579999999999999999999999 788888754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=85.43  E-value=2.3  Score=38.32  Aligned_cols=38  Identities=26%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .+|.|+|+|.+|...++.+...|. +|+++++++++.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~   40 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAA   40 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHH
Confidence            368999999999998888888898 89999999876654

>PRK06847 hypothetical protein; Provisional

Probab=85.41  E-value=1.4  Score=40.36  Aligned_cols=34  Identities=29%  Similarity=0.280  Sum_probs=29.4

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ...|+|+|+|+.|++++..++..|. +|+++++.+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            3579999999999999999999999 788888654

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=85.40  E-value=2.2  Score=38.92  Aligned_cols=36  Identities=36%  Similarity=0.484  Sum_probs=32.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|+++.|+|.|.+|.+.++.++..|+ +|+..++...
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~  180 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN  180 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence            48999999999999999999999999 8999987753

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=85.39  E-value=3.8  Score=35.00  Aligned_cols=37  Identities=27%  Similarity=0.073  Sum_probs=27.9

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFE  240 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~  240 (280)
                      +++||.|+ |++|...++.+...|+ .++++ .+++++.+
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~   41 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW-SVGINYARDAAAAE   41 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            58999998 9999998888888898 56554 45555443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=85.38  E-value=2  Score=36.48  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=30.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|++|+|+|+|.+|..-+..+...|+ .|++++...
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence            47899999999999999999999999 788886643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=85.37  E-value=2.6  Score=36.47  Aligned_cols=35  Identities=26%  Similarity=0.110  Sum_probs=29.2

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -++++++|.|+ |++|...++.+...|+ +++++.++
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~   40 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRS   40 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789999998 9999999999999999 66666653

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=85.32  E-value=2.5  Score=37.70  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=32.6

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ++|.|+|+|.+|...++.+...|. .|+++++++++++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~   41 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALS   41 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHH
Confidence            579999999999998888888898 8999999987765

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.31  E-value=5.2  Score=34.56  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=27.2

Q ss_pred             CCCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEc
Q 023561          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       200 ~~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      -+|++++|+|+ +  ++|...+..+...|+ +|++++
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~   39 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY   39 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence            45789999998 3  799999988888999 677764

>PRK09134 short chain dehydrogenase; Provisional

Probab=85.27  E-value=2.8  Score=36.18  Aligned_cols=38  Identities=16%  Similarity=0.097  Sum_probs=29.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKF  239 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~  239 (280)
                      .++++||.|+ |++|...+..+...|+ +++++.+ +.++.
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~   47 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRSRDEA   47 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHH
Confidence            4679999998 9999998888888898 6666544 44443

>PLN02650 dihydroflavonol-4-reductase

Probab=85.25  E-value=2  Score=39.21  Aligned_cols=39  Identities=18%  Similarity=0.072  Sum_probs=31.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ..++|||+|+ |.+|...+..+...|. +|+++.++.++.+
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~~~~~~   43 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPANVK   43 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcCcchhH
Confidence            4578999998 9999999988888898 7888777654443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=85.24  E-value=2  Score=38.73  Aligned_cols=41  Identities=20%  Similarity=0.113  Sum_probs=32.8

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .+|+|+|+|++|...+..+...|. .|..+++..++++.+++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~   43 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ   43 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh
Confidence            369999999999877666667788 78889888777777765

>PRK04457 spermidine synthase; Provisional

Probab=85.24  E-value=5.3  Score=35.24  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=35.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++++||++|.|+ |.++..+++.....++++++.+++-.+.+++
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~  108 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARN  108 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence            4568899999864 7778888887754489999999999988887

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=85.21  E-value=1.9  Score=38.77  Aligned_cols=73  Identities=22%  Similarity=0.171  Sum_probs=43.9

Q ss_pred             EEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-c----C---CcEEEcCCCCCCccHHHHHHHhcCC-Cce
Q 023561          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----G---VTEFVNSKNCGDKSVSQVLLSIYDL-PLL  274 (280)
Q Consensus       205 VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~----G---a~~vi~~~~~~~~~~~~~v~~~~~g-g~~  274 (280)
                      |||+|+ |.+|...+.-+...+.+.++.+++++.++-.++. +    .   ....+.+.- .+-...+.+.+.... +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vi-gDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVI-GDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--C-TSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCcee-ecccCHHHHHHHHhhcCCC
Confidence            799998 9999988877777787799999999988766654 4    1   111111110 113345566666655 666


Q ss_pred             EEEe
Q 023561          275 TISV  278 (280)
Q Consensus       275 ~v~~  278 (280)
                      .|+.
T Consensus        80 iVfH   83 (293)
T PF02719_consen   80 IVFH   83 (293)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=85.20  E-value=3.2  Score=37.83  Aligned_cols=45  Identities=22%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH---HHHHHcC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF---EIGKRFG  246 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~---~~~~~~G  246 (280)
                      .+.+|+|.|+ |-+|...+..+..+|. +|.++.|++++.   +.++++.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~   53 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLE   53 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcc
Confidence            6789999999 9999999999999999 899999987653   3466644

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=85.14  E-value=1.2  Score=36.88  Aligned_cols=32  Identities=28%  Similarity=0.357  Sum_probs=23.6

Q ss_pred             EEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       206 lI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +|+|+|+.|++++..++..|.+.++++++.++
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~   32 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR   32 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            57899999999999999999955999998743

...

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=85.13  E-value=2.2  Score=38.03  Aligned_cols=69  Identities=19%  Similarity=0.314  Sum_probs=48.8

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh---HHHHHH------HcCCcEEEcCCCCCCccHHHHHHHhcCCCc
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---KFEIGK------RFGVTEFVNSKNCGDKSVSQVLLSIYDLPL  273 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~---~~~~~~------~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~  273 (280)
                      .+|.|+|+|..|+++++.++..|. .|.+++.+.-   |+.--+      .+|+.++ +.++   +-|.+.+..+...|+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYf-k~~~---~~F~~~Ve~~~~~gl   76 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGR-EVTVFEKGRGVGGRLATRRLDGGRFDHGAQYF-KPRD---ELFLRAVEALRDDGL   76 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCc-EEEEEEcCCCcccchheeccCCccccccceee-cCCc---hHHHHHHHHHHhCCc
Confidence            358899999999999999999999 8999886542   222211      3555443 4554   788888887776665


Q ss_pred             eEE
Q 023561          274 LTI  276 (280)
Q Consensus       274 ~~v  276 (280)
                      .++
T Consensus        77 V~~   79 (331)
T COG3380          77 VDV   79 (331)
T ss_pred             eee
Confidence            443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=85.04  E-value=6.4  Score=33.40  Aligned_cols=51  Identities=25%  Similarity=0.389  Sum_probs=39.0

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++-.+.+++
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~  119 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKK  119 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence            45677889999999998754 6677777777653 389999999877666653

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=85.03  E-value=2  Score=38.83  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CCCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       200 ~~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      -.|+++||.|+   .++|.+.+..+...|+ +|+. .+...++
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l   47 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPAL   47 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchh
Confidence            35899999998   8999999999999999 7776 4444443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.97  E-value=2.6  Score=39.83  Aligned_cols=44  Identities=20%  Similarity=0.334  Sum_probs=37.7

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCc
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      +|+|+|.|.+|...++.++..|. .|+++++++++.+.+++ .|..
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~~   46 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDVR   46 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCEE
Confidence            58899999999999999999998 78999999988888765 5543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.96  E-value=2.6  Score=37.64  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=33.3

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .+|.|+|+|.+|...++.+...|. .|+..+.++++++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH
Confidence            479999999999988888888899 89999999987765

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=84.93  E-value=3.5  Score=37.84  Aligned_cols=43  Identities=16%  Similarity=0.084  Sum_probs=36.3

Q ss_pred             HcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       196 ~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ...--.+++|||+|+|-+|.+++..++..|+.+++++-++.++
T Consensus       168 ~~~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        168 RRQKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             HhCCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            3344568999999999999999999999998789999888554

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=84.92  E-value=1.9  Score=39.14  Aligned_cols=34  Identities=35%  Similarity=0.459  Sum_probs=31.4

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .|++|.|+|-|.+|...++.++.+|+ +|++.++.
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~  177 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTS  177 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCC
Confidence            57999999999999999999999999 89999874

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=84.87  E-value=8  Score=32.83  Aligned_cols=45  Identities=13%  Similarity=0.181  Sum_probs=36.0

Q ss_pred             EEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHHcCCcEE
Q 023561          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEF  250 (280)
Q Consensus       205 VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~--~~~~~~~~Ga~~v  250 (280)
                      |+|+|+ |.+|...++.+...+. .|.++.|+..  +.+.++..|+..+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv   48 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV   48 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe
Confidence            789998 9999999999888888 7888877753  4566677898644

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07023 short chain dehydrogenase; Provisional

Probab=84.85  E-value=3.8  Score=34.95  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=28.7

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ++||.|+ |++|...+..+...|+ +|++++++.++
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~-~v~~~~r~~~~   37 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGI-AVLGVARSRHP   37 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCC-EEEEEecCcch
Confidence            6899998 9999999888888899 78888877554

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=84.83  E-value=2.6  Score=40.20  Aligned_cols=50  Identities=20%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             CCCCCCEEEEECccHHHHH-HHHHHHHcCCCeEEEEcCChh-HHHHHHHcCCc
Q 023561          198 NVEVGSTVVIFGLGSIGLA-VAEGARLCGATRIIGVDVISE-KFEIGKRFGVT  248 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~-a~~la~~~g~~~vi~~~~~~~-~~~~~~~~Ga~  248 (280)
                      +...+++|+|+|.|..|.. ++.+++..|+ .|++.|.... ..+.+++.|..
T Consensus         3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi~   54 (461)
T PRK00421          3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKESAVTQRLLELGAI   54 (461)
T ss_pred             CcCCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCChHHHHHHHCCCE
Confidence            4556788999999999999 6999999999 8999997543 23335555653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=84.81  E-value=1.5  Score=42.10  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..++|+|+|+|+.|++++..++..|. .++++++++
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~   43 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGH-TVVVFEREK   43 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCC
Confidence            35789999999999999999999998 888888754

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=84.79  E-value=2.1  Score=38.21  Aligned_cols=37  Identities=16%  Similarity=0.077  Sum_probs=30.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .+++|||+|+ |.+|...+..+...|. .|+++.++.++
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~~   40 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPND   40 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCCc
Confidence            3578999998 9999999988888899 78877776543

>PRK08309 short chain dehydrogenase; Provisional

Probab=84.53  E-value=6.9  Score=32.34  Aligned_cols=39  Identities=15%  Similarity=-0.025  Sum_probs=26.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++|+|++++|...+..+...|+ +|+++.+++++.+.+.
T Consensus         2 ~vlVtGGtG~gg~la~~L~~~G~-~V~v~~R~~~~~~~l~   40 (177)
T PRK08309          2 HALVIGGTGMLKRVSLWLCEKGF-HVSVIARREVKLENVK   40 (177)
T ss_pred             EEEEECcCHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHH
Confidence            58899984344445555556788 7888888877765544

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=84.45  E-value=7.7  Score=34.64  Aligned_cols=52  Identities=21%  Similarity=0.246  Sum_probs=40.0

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~  253 (280)
                      .++|+..+.|..|.+.+..++..|.+-++++..  +++|++.++.+|++-+...
T Consensus        65 ~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~  118 (304)
T cd01562          65 AKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYG  118 (304)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeC
Confidence            456666667999999999999999976666654  3568999999999755443

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=84.30  E-value=2.2  Score=36.08  Aligned_cols=34  Identities=38%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..+|+|.|+|++|...++.+...|..+++.+|.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4789999999999999999999999889999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN00011 cysteine synthase

Probab=84.28  E-value=12  Score=34.02  Aligned_cols=61  Identities=20%  Similarity=0.167  Sum_probs=44.8

Q ss_pred             HHHHcCCCCC-CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC--hhHHHHHHHcCCcEEEcC
Q 023561          193 AWRTANVEVG-STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI--SEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       193 l~~~~~~~~g-~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~--~~~~~~~~~~Ga~~vi~~  253 (280)
                      +.+...+.+| ++|+.-..|..|++.+..++.+|.+-.+++...  +.|+++++.+|++-++..
T Consensus        59 a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~  122 (323)
T PLN00011         59 AEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTD  122 (323)
T ss_pred             HHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEEC
Confidence            3455567777 555543449999999999999999656666543  479999999999766543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=84.27  E-value=2.3  Score=37.18  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4789999999999999999999999999999865

>PRK07236 hypothetical protein; Provisional

Probab=84.26  E-value=1.7  Score=40.27  Aligned_cols=34  Identities=24%  Similarity=0.138  Sum_probs=29.5

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ...|+|+|+|..|++++.++...|. .|+++++.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            4679999999999999999998999 788888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	280
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		3e-63
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		4e-61
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		1e-52
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		1e-52
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		2e-52
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		2e-51
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		4e-48
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		1e-47
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		1e-47
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		2e-47
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		2e-45
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		8e-45
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		8e-45
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		8e-45
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		8e-45
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		9e-45
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		9e-45
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		9e-45
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		1e-44
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		1e-44
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		2e-44
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		3e-44
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		3e-44
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		7e-44
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		9e-44
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		4e-43
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		7e-42
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		6e-41
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		7e-41
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-40
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		2e-40
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		2e-22
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		9e-12
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		2e-09
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		9e-09
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		2e-08
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		4e-08
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		5e-08
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		5e-08
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		5e-08
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		8e-08
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		9e-08
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		1e-07
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		1e-07
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		1e-07
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		2e-07
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		2e-07
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		3e-07
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		8e-07
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		2e-06
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		3e-06
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		4e-06
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		4e-06
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		7e-06
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		3e-05
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		4e-05
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		4e-05
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		9e-05
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		1e-04
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		3e-04
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		4e-04
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		7e-04
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		8e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/265 (47%), Positives = 169/265 (63%), Gaps = 9/265 (3%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PLVI++V V PP + EVR++I+ T+LCH+D   W  KD   +
Sbjct: 2   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGL 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLC----SAFPF 125
           FP ILGHEA                    IP + A+C EC  C+S K NLC    SA   
Sbjct: 62  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 121
Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CG
Sbjct: 122 GI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCG 177
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E  K+F
Sbjct: 178 VPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF 237
Query: 246 GVTEFVNSKNCGDKSVSQVLLSIYD 270
           GV EFVN K+  DK + +V++ + D
Sbjct: 238 GVNEFVNPKD-HDKPIQEVIVDLTD 261

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  231 bits (588), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 120/265 (45%), Positives = 165/265 (62%), Gaps = 3/265 (1%)
Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S+ T G+ I C+AA+A  P +PLVI++V V PP + EVRV+++ T+LCH+D   W  KD 
Sbjct: 17  SSATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDP 76
Query: 67  PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP +LGHEA                    IP + A+C EC  C+S K NLC      
Sbjct: 77  EGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAA 136
Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DP  P  + CLL CG
Sbjct: 137 TGVGVMMNDRKSRFS-INGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCG 195
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V +FGLG++GLAVAEGA+  GA+RIIG+D+ S+KF+  K F
Sbjct: 196 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNF 255
Query: 246 GVTEFVNSKNCGDKSVSQVLLSIYD 270
           GVTEF+N K   ++ + QV++ + D
Sbjct: 256 GVTEFINPKE-HEQPIQQVIVDLTD 279

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/261 (41%), Positives = 151/261 (57%), Gaps = 2/261 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           +A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    
Sbjct: 1   SANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGC 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHE                     IP ++  C EC  C + K NLC         
Sbjct: 61  FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG
Sbjct: 121 GLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE
Sbjct: 180 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            +N ++   K + +VL+ + D
Sbjct: 240 CINPQDF-SKPIQEVLIEMTD 259

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/260 (41%), Positives = 150/260 (57%), Gaps = 2/260 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 2   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 61
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct: 62  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 122 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 181 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 240
Query: 251 VNSKNCGDKSVSQVLLSIYD 270
           +N ++   K + +VL+ + D
Sbjct: 241 INPQDF-SKPIQEVLIEMTD 259

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/260 (41%), Positives = 150/260 (57%), Gaps = 2/260 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 251 VNSKNCGDKSVSQVLLSIYD 270
           +N ++   K + +VL+ + D
Sbjct: 240 INPQDF-SKPIQEVLIEMTD 258

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/260 (41%), Positives = 149/260 (57%), Gaps = 2/260 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH                      IP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 251 VNSKNCGDKSVSQVLLSIYD 270
           +N ++   K + +VL+ + D
Sbjct: 240 INPQDF-SKPIQEVLIEMTD 258

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/256 (41%), Positives = 147/256 (57%), Gaps = 2/256 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE                     IP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240
Query: 250 FVNSKNCGDKSVSQVL 265
           FVN  N   + +SQVL
Sbjct: 241 FVNP-NDHSEPISQVL 255

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/256 (40%), Positives = 148/256 (57%), Gaps = 4/256 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+E+ V PP + EVR++I+ T +C +D    K     + 
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIK-GTMVSK 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-TGR 119
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 120 GVLADGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE 238
Query: 250 FVNSKNCGDKSVSQVL 265
            ++ K+   K +S+VL
Sbjct: 239 CISPKD-STKPISEVL 253

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/256 (40%), Positives = 148/256 (57%), Gaps = 4/256 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+E+ V PP + EVR++I+ T +C +D    K     + 
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIK-GTMVSK 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-TGR 119
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 120 GVLADGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE 238
Query: 250 FVNSKNCGDKSVSQVL 265
            ++ K+   K +S+VL
Sbjct: 239 CISPKD-STKPISEVL 253

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 147/266 (55%), Gaps = 6/266 (2%)
Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S  T GK I+C+AAIA   G+PL I+EV V PP +HEVR++II TSLCH+D T    K  
Sbjct: 1   SMGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFE 60
Query: 67  PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 126
              FP I+GHEA                    IP +   C +C  C S   NLC      
Sbjct: 61  GLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNL 120
Query: 127 ISP----WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 182
            SP     +  D+TSRF   +G+ ++HF   S+FS+YTV+   ++ K+D      R CLL
Sbjct: 121 KSPASDQQLMEDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLL 179
Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
            CG STG GAA   A V  GST  +FGLG +GL+   G +  GA+RIIG+D+ SEKF   
Sbjct: 180 GCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKA 239
Query: 243 KRFGVTEFVNSKNCGDKSVSQVLLSI 268
           K  G T+ +N ++   K + +V++ +
Sbjct: 240 KALGATDCLNPRDL-HKPIQEVIIEL 264

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 145/263 (55%), Gaps = 7/263 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +CH+D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDINATDPKK-KAL 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK-- 126
           FP +LGHE                     IP F   C  C  C S   NLC     FK  
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 127 -ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
Query: 246 GVTEFVNSKNCGDKSVSQVLLSI 268
           G T+ +N +   DK V  V+  +
Sbjct: 240 GATDCLNPREL-DKPVQDVITEL 261

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  176 bits (447), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVS-GTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  176 bits (447), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 143/265 (53%), Gaps = 12/265 (4%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD          A 
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSD-DHVVSGTLVAP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F+  C +C  C+  +GNLC       + 
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----NL 115
Query: 130 WMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG
Sbjct: 116 SMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCG 174
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  
Sbjct: 175 FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 234
Query: 246 GVTEFVNSKNCGDKSVSQVLLSIYD 270
           G TE VN ++   K + +VL  + +
Sbjct: 235 GATECVNPQDY-KKPIQEVLTEMSN 258

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  176 bits (447), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 143/265 (53%), Gaps = 12/265 (4%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD          A 
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSD-DHVVSGTLVAP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F+  C +C  C+  +GNLC       + 
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----NL 115
Query: 130 WMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG
Sbjct: 116 SMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCG 174
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  
Sbjct: 175 FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 234
Query: 246 GVTEFVNSKNCGDKSVSQVLLSIYD 270
           G TE VN ++   K + +VL  + +
Sbjct: 235 GATECVNPQDY-KKPIQEVLTEMSN 258

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/256 (38%), Positives = 140/256 (54%), Gaps = 4/256 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +  K +  P+ 
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLK-EIIPSK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+                   IP F+  C  C  C+S   N C         
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 121
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG
Sbjct: 122 GLMADMTSRF-TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPL-ESCLIGCGFATG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      G TE
Sbjct: 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE 239
Query: 250 FVNSKNCGDKSVSQVL 265
            +N K+  DK + +V+
Sbjct: 240 CLNPKDY-DKPIYEVI 254

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVS-GTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  ++F   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 138/261 (52%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  175 bits (443), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 144/263 (54%), Gaps = 7/263 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KAL 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK-- 126
           FP +LGHE                     IP F   C  C  C S   NLC     FK  
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 127 -ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
Query: 246 GVTEFVNSKNCGDKSVSQVLLSI 268
           G T+ +N +   DK V  V+  +
Sbjct: 240 GATDCLNPREL-DKPVQDVITEL 261

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  173 bits (439), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 138/261 (52%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP     C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  173 bits (439), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 138/261 (52%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/261 (37%), Positives = 137/261 (52%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD       +    
Sbjct: 2   TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVS-GNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF    G+ IHHFV VS+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRF-TCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            +N ++   K + +VL  + D
Sbjct: 240 CINPQDY-KKPIQEVLKEMTD 259

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  167 bits (422), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 136/261 (52%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +CH+D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            +N ++   K + +VL  + D
Sbjct: 240 CINPQDY-KKPIQEVLKEMTD 259

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 135/261 (51%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            +N ++   K + +VL  + D
Sbjct: 240 CINPQDY-KKPIQEVLKEMTD 259

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  164 bits (414), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 135/261 (51%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            +N ++   K + +VL  + D
Sbjct: 240 CINPQDY-KKPIQEVLKEMTD 259

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 135/261 (51%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            +N ++   K + +VL  + D
Sbjct: 240 CINPQDY-KKPIQEVLKEMTD 259

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 135/261 (51%), Gaps = 3/261 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C +D            
Sbjct: 2   TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVS-GTMVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP  +  C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQ 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   R + IHHF+ +S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            +N ++   K + +VL  + D
Sbjct: 240 CINPQDY-KKPIQEVLKEMTD 259

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 3/237 (1%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEA 78
           AA+    G    +  + +  P   EV V+++ T +CH+D+     K +P   P +LGHE 
Sbjct: 9   AAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQK-YPVPLPAVLGHEG 67
Query: 79  IXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISPWMPRDQTS 137
                               +  +   C +C  C +     CS F  +  S        +
Sbjct: 68  SGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHA 126
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
                +G    HF + SSF+ Y +    + VKV   VP      L CG+ TG GA     
Sbjct: 127 LCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINAL 186
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ K+ G T  +NSK
Sbjct: 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSK 243

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 36/248 (14%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRI 73
           +AA+  A G+PL IDEV +  P   +++V I  + +CH+D+      W +K  P   P I
Sbjct: 27  KAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNP---PFI 83
Query: 74  LGHEAIX-XXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE +                    IP     C  C  C      LC            
Sbjct: 84  PGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCE----------- 132
Query: 133 RDQTSRFKDLRGETIHHFVSVS-SFSEYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGV 190
                       E ++   SV+  F+EY V D   V  +   +  N  A +L  GV+  V
Sbjct: 133 ------------EQLNTGYSVNGGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT--V 178
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
               +  + + G  VVI G+G +G    + AR  G   +  VD+   K ++ +R G T  
Sbjct: 179 YKGLKVTDTKPGDWVVISGIGGLGHMAVQYARAMG-LNVAAVDIDDRKLDLARRLGATVT 237
Query: 251 VNSKNCGD 258
           VN+K   D
Sbjct: 238 VNAKTVAD 245

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 97/247 (39%), Gaps = 40/247 (16%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+  A G PL IDEV V  P   +V+V+I  + +CH+D+      D+P     P I G
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAAD-GDWPVKPTLPFIPG 62
Query: 76  HEAIXXXXXXXXXXXXXXXX-XXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    +P   + C  C  C      LC            + 
Sbjct: 63  HEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE-----------KQ 111
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR------ACLLSCGVST 188
           Q + +    G           + EY V D  +V      + P++      A +L  GV+ 
Sbjct: 112 QNTGYSVNGG-----------YGEYVVADPNYV-----GLLPDKVGFVEIAPILCAGVT- 154
Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
            V    +  +   G  VVI G+G +G    + AR  G  R+  VD+   K  + +R G  
Sbjct: 155 -VYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGAE 212
Query: 249 EFVNSKN 255
             VN+++
Sbjct: 213 VAVNARD 219

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 91/241 (37%), Gaps = 21/241 (8%)
Query: 27  EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRILGHEAIXXXXX 84
           EP+V+D +    P   E+ +++    LCHSD+    M    +    P  LGHE +     
Sbjct: 12  EPVVVD-IPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAE 70
Query: 85  XXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG 144
                           +    C  C  C   + N C+                R  DL G
Sbjct: 71  LGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCT----------------RAADL-G 113
Query: 145 ETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGS 203
            T     S  S +EY ++D A H+V +    P   A L   G++     +     +  GS
Sbjct: 114 ITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGS 173
Query: 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQ 263
           T V+ G+G +G    +  R   A R+I VD+  ++  + +  G    V S      ++ +
Sbjct: 174 TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRE 233
Query: 264 V 264
           +
Sbjct: 234 L 234

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           ++E+GS+VV+ G+G++GL    GA+L GA RIIGV       E  K +G T+ +N KN
Sbjct: 163 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN 220

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 96/246 (39%), Gaps = 30/246 (12%)
Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FP 71
           P   +AA+  A G PL I+EV V  P   +V V+I  + +CH+D+   +  D+P     P
Sbjct: 4   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAE-GDWPVKPPLP 62
Query: 72  RILGHEAIXXXXXXXXXXXXXXXX-XXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            I GHE +                    IP     C  C  C +    LC +        
Sbjct: 63  FIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCES-------- 114
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP-PNRACLLSCGVSTG 189
               Q +    + G           ++EY + D  +V  +   V     A +L  GV+  
Sbjct: 115 ----QQNTGYSVNG----------GYAEYVLADPNYVGILPKNVEFAEIAPILCAGVT-- 158
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           V    +  N   G  V I G+G +G    + AR  G   +  +D+   K E+ ++ G + 
Sbjct: 159 VYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGASL 217
Query: 250 FVNSKN 255
            VN++ 
Sbjct: 218 TVNARQ 223

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           GL    GA+L GA RIIGV       E  K +G T+ +N KN
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN 220

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           ++++GS+VV+ G+G++GL    GA+L GA RIIGV       E  K +G T+ +N KN
Sbjct: 163 DIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN 220

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 30/257 (11%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAIXXXXXX 85
           L +++  +  P   EV +++    +C SDV ++   ++ DF    P ++GHEA       
Sbjct: 16  LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75
Query: 86  XXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
                               C  C  C+  K NLC    F  +P  P D         G 
Sbjct: 76  GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP--PDD---------GN 124
Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205
              ++V  + F            K+   V      LL   +S GV  A R A V++G+TV
Sbjct: 125 LARYYVHAADFCH----------KLPDNVSLEEGALLE-PLSVGV-HACRRAGVQLGTTV 172
Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSVSQ 263
           ++ G G IGL     A+  GA  ++       + E+ K  G  VT  V+     + S+ +
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIE 231
Query: 264 VLLS-IYDLPLLTISVS 279
            + S I DLP +TI  S
Sbjct: 232 RIRSAIGDLPNVTIDCS 248

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNR 178
           + FP   +  +   + S FKD              F EY  ++ A  ++  +   +P   
Sbjct: 97  AGFPQHSNGMLAGWKFSNFKD------------GVFGEYFHVNDADMNLAILPKDMPLEN 144
Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
           A +++  ++TG   A   A++++GS+VV+ G+G++GL    GA+L GA RIIGV      
Sbjct: 145 AVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC 203
Query: 239 FEIGKRFGVTEFVNSKN 255
            E  K +G T+ +N KN
Sbjct: 204 VEAAKFYGATDILNYKN 220

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 91/239 (38%), Gaps = 30/239 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDL-HAAHGDWPVKPKLPLIPG 60
Query: 76  HEAIXXXXXXX-XXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EH 108
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +    + G           ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 109 QKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKA 156
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
            +    + G  V I+G+G +G    + A+  G   ++ VD+  EK E+ K  G    VN
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVN 214

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           GL    GA+L GA RIIGV       E  K +G T+ +N KN
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN 220

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT-------VPPNRA 179
           I+P    +++ R   +    +      S+F +    ++ HV + D         + P  A
Sbjct: 86  ITPDWGEEESQRGYPMHSGGMLGGWKFSNFKDGVFSEVFHVNEADANLALLPRDIKPEDA 145
Query: 180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            +LS  V+TG   A   AN+++G TV + G+G +GL    GA   GA RI  V       
Sbjct: 146 VMLSDMVTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC 204
Query: 240 EIGKRFGVTEFVNSKNCGDKSVSQVL 265
           +I   +G T+ +N KN GD  V Q+L
Sbjct: 205 DIALEYGATDIINYKN-GD-IVEQIL 228

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT-------VPPNRA 179
           I+P    +++ R   +    +      S+F +    ++ HV + D         + P  A
Sbjct: 86  ITPDWGEEESQRGYPMHSGGMLGGWKFSNFKDGVFSEVFHVNEADANLALLPRDIKPEDA 145
Query: 180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239
            +LS  V+TG   A   AN+++G TV + G+G +GL    GA   GA RI  V       
Sbjct: 146 VMLSDMVTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC 204
Query: 240 EIGKRFGVTEFVNSKNCGDKSVSQVL 265
           +I   +G T+ +N KN GD  V Q+L
Sbjct: 205 DIALEYGATDIINYKN-GD-IVEQIL 228

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 90/239 (37%), Gaps = 30/239 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDL-HAAHGDWPVKPKLPLIPG 60
Query: 76  HEAIXXXXXXX-XXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EH 108
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +    + G           ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 109 QKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKA 156
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
            +    + G  V I+G+G  G    + A+  G   ++ VD+  EK E+ K  G    VN
Sbjct: 157 LKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVN 214

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K+
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKD 220

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K+
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKD 220

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+G+TV + G+G +
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVLGIGPV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           GL    GA+L GA RII V       +  K +G T+ VN K+
Sbjct: 179 GLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKD 220

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 88/238 (36%), Gaps = 29/238 (12%)
Query: 30  VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE--AIXXXXXXXX 87
           V + VI +  +  EVRV+I  + LC SD+     K+    +P  LGHE            
Sbjct: 14  VAESVIPEIKHQDEVRVKIASSGLCGSDLPRI-FKNGAHYYPITLGHEFSGYIDAVGSGV 72
Query: 88  XXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
                      +P  L  C  C  C     + C+ + F  S    RD             
Sbjct: 73  DDLHPGDAVACVP--LLPCFTCPECLKGFYSQCAKYDFIGSR---RD------------- 114
Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 207
                   F+EY V+   +V  +   +P      +   ++ G+ A       E    V+I
Sbjct: 115 ------GGFAEYIVVKRKNVFALPTDMPIEDGAFIEP-ITVGLHAFHLAQGCE-NKNVII 166
Query: 208 FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVL 265
            G G+IGL   + A   GA  +  +D+ SEK  + K FG  +  NS       +  VL
Sbjct: 167 IGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVL 224

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 27/181 (14%)
Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF--PR 72
           ++ +AA+     EPL I++V +  P   EV +RI    +C +D+  WK  +    F  P 
Sbjct: 2   VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPI 61
Query: 73  ILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ILGHE                     +     D T C  CR  K N+C     +I P   
Sbjct: 62  ILGHENAGTIVEVGELAKVKKGDNVVVYATWGDLT-CRYCREGKFNICKN---QIIP--- 114
Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVSTGVG 191
                      G+T +       FSEY ++  +  +VK++   P   A L   G +T +G
Sbjct: 115 -----------GQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAG-TTSMG 157
Query: 192 A 192
           A
Sbjct: 158 A 158

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 99/250 (39%), Gaps = 42/250 (16%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL ++++ +  P   +V ++I    +CHSDV   +        ++D    
Sbjct: 2   RAMRLVEIGKPLKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE                       +       C  CR  + +LC       SP
Sbjct: 62  LPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCD------SP 115
Query: 130 -WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVS 187
            W+  +    + +        +V V  +     L     V+  P         L+C GV+
Sbjct: 116 RWLGINYDGAYAE--------YVLVPHYKYLYKLRRLSAVEAAP---------LTCSGVT 158
Query: 188 TGVGAAWRTANVEVGSTVVIFG----LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
           T    A R A+++   T+V+ G    LG++ + +A+   + GAT IIGVDV  E  E  K
Sbjct: 159 TY--RAVRKASLDPSKTLVVIGAGGGLGTMAIQIAKA--VSGAT-IIGVDVREEALEAAK 213
Query: 244 RFGVTEFVNS 253
           R G    +N+
Sbjct: 214 RAGADYVINA 223

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
           N+++G TV + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN G
Sbjct: 163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-G 221
Query: 258 DKSVSQVL 265
           D  V Q+L
Sbjct: 222 D-IVEQIL 228

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 83/230 (36%), Gaps = 29/230 (12%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXX 88
           L I E  +  P++ EVRV++    +C SD   ++  +  A +PR++GHE           
Sbjct: 32  LSIIEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 91
Query: 89  XXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
                         +  C  C  C   K N+C+                         + 
Sbjct: 92  VESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTL----------------------AVL 129
Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS--CGVSTGVGAAWRTANVEVGSTVV 206
              +   FSEY V+   +  K+   V    A ++      +   G    T N     TV+
Sbjct: 130 GVHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTEN----DTVL 185
Query: 207 IFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           ++G G IGL + +  + +     +I  D I E+ E  K  G    +N+  
Sbjct: 186 VYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQ 235

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 35/219 (15%)
Query: 39  PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE--AIXXXXXXXXXXXXXXXXX 96
           P   ++ V++    +C +D       +FP+  P  LGHE   I                 
Sbjct: 45  PGPDDLLVKVEACGICGTDRHLLH-GEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGARI 103
Query: 97  XXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF 156
              P+    C  C  C++ + NLC                   ++LR   IH       F
Sbjct: 104 TGDPNI--SCGRCPQCQAGRVNLC-------------------RNLRAIGIHRD---GGF 139
Query: 157 SEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           +EY ++      ++  T+ P        L+C +          + ++ GSTV I G G I
Sbjct: 140 AEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLH-----GVDLSGIKAGSTVAILGGGVI 194
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
           GL   + ARL GAT +I     + K  + +  G T  V+
Sbjct: 195 GLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVD 233

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 34/240 (14%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILG 75
           A   T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I G
Sbjct: 6   AIXKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXG 65
Query: 76  HEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE                            C +C  CR  + ++C              Q
Sbjct: 66  HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------------Q 111
Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
            ++   +  + +        F+EY V+   ++ K   ++PP  A L   L   V T +  
Sbjct: 112 NTKIFGVDTDGV--------FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVL-- 161
Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
               A    G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G    +N
Sbjct: 162 ----AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVIN 217

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 34/240 (14%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILG 75
           A   T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I G
Sbjct: 7   AIXKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXG 66
Query: 76  HEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE                            C +C  CR  + ++C              Q
Sbjct: 67  HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------------Q 112
Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
            ++   +  + +        F+EY V+   ++ K   ++PP  A L   L   V T +  
Sbjct: 113 NTKIFGVDTDGV--------FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVL-- 162
Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
               A    G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G    +N
Sbjct: 163 ----AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVIN 218

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 105/277 (37%), Gaps = 41/277 (14%)
Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPN---SHEVRVRIICTSLCHSD 57
           M IE+  +++ G   + +AA      +PL I++V  D P      +V VRI    +CH+D
Sbjct: 1   MRIEQDFSQSLGVE-RLKAARLHEYNKPLRIEDV--DYPRLEGRFDVIVRIAGAGVCHTD 57
Query: 58  VTF----WKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCR 113
           +      W     P   P  LGHE +                   I H       C+ CR
Sbjct: 58  LHLVQGMWHELLQPK-LPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACR 116
Query: 114 SKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173
           + +   C    F   P +  D                     F+E+       V+K+   
Sbjct: 117 AGEDMHCENLEF---PGLNID-------------------GGFAEFMRTSHRSVIKLPKD 154
Query: 174 VPPNR----ACLLSCGVST--GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT 227
           +   +    A L   G++    V  A RT  +  G+ V I G+G +G    +  ++    
Sbjct: 155 ISREKLVEMAPLADAGITAYRAVKKAART--LYPGAYVAIVGVGGLGHIAVQLLKVMTPA 212
Query: 228 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQV 264
            +I +DV  EK ++ +R G    V+++    K V ++
Sbjct: 213 TVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMEL 249

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 93/243 (38%), Gaps = 35/243 (14%)
Query: 18  RAAIATAPGEPLVID--EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           RA +  A G P V++  ++ V  P   EVRVR+   +L H DV   K    P +  P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61
Query: 75  GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +                     + +    C  C  C + + NLC           PR 
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLC-----------PRY 110
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
           Q      + GE  H      +++EY VL  A++       P N +   +  +      AW
Sbjct: 111 Q------ILGEHRH-----GTYAEYVVLPEANLA----PKPKNLSFEEAAAIPLTFLTAW 155
Query: 195 RTA----NVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +       V  G  V++   GS + +A  + A+L GA R+I      +K    K  G  E
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADE 214
Query: 250 FVN 252
            VN
Sbjct: 215 TVN 217

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 95/261 (36%), Gaps = 21/261 (8%)
Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 75  GHEAIXXXXXXXXXXXXXXXXXXXIPHFLA-----DCTECVGCR-SKKGNLCSAFPFKIS 128
           GHE                         +       C EC  C+ SK+  LC   P +  
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLC---PNRKV 132
Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVDPTVPPNRACLLSCGVS 187
             + R   S +  LRG           +S + VLD    V+KV      +   +  C  +
Sbjct: 133 YGINRG-CSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181
Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           T   A         G TVVI G G +GL     AR  GA  +I +     + ++ +  G 
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241
Query: 248 TEFVNSKNCGDKSVSQVLLSI 268
              +N +    +   + ++ I
Sbjct: 242 DLTLNRRETSVEERRKAIMDI 262

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 85/230 (36%), Gaps = 29/230 (12%)
Query: 21  IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHE 77
           +   PG+ L ++   +  P  +EV +++    +C SDV +W   ++ DF    P +LGHE
Sbjct: 11  VVHGPGD-LRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHE 69
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QT 136
           A                         A       C+  + NL     F  +P  P D   
Sbjct: 70  ASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATP--PDDGNL 127
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            RF        +      +F E  +++                  LS G+      A R 
Sbjct: 128 CRFYKHNANFCYKLPDNVTFEEGALIEP-----------------LSVGIH-----ACRR 165
Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           A V +G+ V++ G G IGL     A+  GA +++  D+ + +    K  G
Sbjct: 166 AGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVG 215

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 88/230 (38%), Gaps = 31/230 (13%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXX 88
           LV  E+    PN  E  + +    +CH+D+      DF      +LGHE I         
Sbjct: 16  LVEKELRAIKPN--EALLDMEYCGVCHTDLHV-AAGDFGNKAGTVLGHEGIGIVKEIGAD 72
Query: 89  XXXXXXXX-XXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
                      +  F   C  C  C S     C            R+  +    + G   
Sbjct: 73  VSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFC------------REVKNAGYSVDGGMA 120
Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVV 206
              + V+ ++          VKV   + P  A  ++C GV+T    A + + V+ G   V
Sbjct: 121 EEAIVVADYA----------VKVPDGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQV 168
Query: 207 IFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           IFG G +G LA+     + GA ++I VD+  +K  + K+ G    +NS +
Sbjct: 169 IFGAGGLGNLAIQYAKNVFGA-KVIAVDINQDKLNLAKKIGADVTINSGD 217

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 31/230 (13%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXX 88
           LV  E+    PN  E  + +    +CH+D+      D+      +LGHE I         
Sbjct: 16  LVEKELRAIKPN--EALLDMEYCGVCHTDLHV-AAGDYGNKAGTVLGHEGIGIVKEIGAD 72
Query: 89  XXXXXXXX-XXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
                      +  F   C  C  C S     C            R+  +    + G   
Sbjct: 73  VSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFC------------REVKNAGYSVDGGMA 120
Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVV 206
              + V+ ++          VKV   + P  A  ++C GV+T    A + + V+ G   V
Sbjct: 121 EEAIVVADYA----------VKVPDGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQV 168
Query: 207 IFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           IFG G +G LA+     + GA ++I VD+  +K  + K+ G    +NS +
Sbjct: 169 IFGAGGLGNLAIQYAKNVFGA-KVIAVDINQDKLNLAKKIGADVIINSGD 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-132
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-130
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-130
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-128
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-128
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-100
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-90
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-58
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-48
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	2e-44
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-43
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	2e-43
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-42
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-39
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-38
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	3e-38
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	7e-36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-35
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	2e-35
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	6e-35
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	7e-34
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	7e-34
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	2e-33
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-32
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-32
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	3e-25
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	3e-24
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-21
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	5e-20
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-19
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-19
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	5e-19
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-18
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	8e-18
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	8e-17
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	8e-17
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-16
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	4e-15
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	1e-14
3gms_A	340	Putative NADPH:quinone reductase; structural genom	6e-13
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	4e-11
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	5e-11
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	8e-11
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	1e-10
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	3e-10
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	3e-10
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-10
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	4e-09
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	5e-09
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	2e-08
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	4e-08
4eye_A	342	Probable oxidoreductase; structural genomics, niai	8e-08
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	3e-07
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-07
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-06
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	9e-06
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	3e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  377 bits (970), Expect = e-132
 Identities = 118/260 (45%), Positives = 162/260 (62%), Gaps = 2/260 (0%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239

Query: 251 VNSKNCGDKSVSQVLLSIYD 270
           +N ++   K + +VL+ + D
Sbjct: 240 INPQDF-SKPIQEVLIEMTD 258

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  372 bits (958), Expect = e-130
 Identities = 115/261 (44%), Positives = 160/261 (61%), Gaps = 2/261 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240

Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
           FVN  +   + +SQVL  + +
Sbjct: 241 FVNPNDH-SEPISQVLSKMTN 260

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  372 bits (958), Expect = e-130
 Identities = 113/265 (42%), Positives = 153/265 (57%), Gaps = 7/265 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KAL 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC        P
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 130 W----MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239

Query: 246 GVTEFVNSKNCGDKSVSQVLLSIYD 270
           G T+ +N +   DK V  V+  +  
Sbjct: 240 GATDCLNPREL-DKPVQDVITELTA 263

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  368 bits (947), Expect = e-128
 Identities = 110/256 (42%), Positives = 151/256 (58%), Gaps = 4/256 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +  K    P+ 
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEII-PSK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C         
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG
Sbjct: 122 GLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      G TE
Sbjct: 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE 239

Query: 250 FVNSKNCGDKSVSQVL 265
            +N K+  DK + +V+
Sbjct: 240 CLNPKDY-DKPIYEVI 254

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  366 bits (943), Expect = e-128
 Identities = 112/261 (42%), Positives = 152/261 (58%), Gaps = 3/261 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

Query: 250 FVNSKNCGDKSVSQVLLSIYD 270
            VN ++   K + +VL  + +
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSN 259

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  297 bits (764), Expect = e-100
 Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 3/244 (1%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
           +     AA+    G    +  + +  P   EV V+++ T +CH+D+     + +P   P 
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRD-QKYPVPLPA 61

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           +LGHE  G++E++G NV  +  GD V+  +   C +C  C +     CS F  +      
Sbjct: 62  VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD 120

Query: 133 RDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
            +               HF + SSF+ Y +    + VKV   VP      L CG+ TG G
Sbjct: 121 SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAG 180

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A      V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ K+ G T  +
Sbjct: 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI 240

Query: 252 NSKN 255
           NSK 
Sbjct: 241 NSKT 244

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  272 bits (697), Expect = 2e-90
 Identities = 60/261 (22%), Positives = 98/261 (37%), Gaps = 19/261 (7%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P I
Sbjct: 15  GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 74

Query: 74  LGHEAIGVVESVGENVDG-----VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
           LGHE  G V  V           +  GD+++ +    C EC  C+  K            
Sbjct: 75  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG 134

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVS 187
             + R   S +  LRG           +S + VLD    V+KV      +   +  C  +
Sbjct: 135 --INRG-CSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           T   A         G TVVI G G +GL     AR  GA  +I +     + ++ +  G 
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241

Query: 248 TEFVNSKNCGDKSVSQVLLSI 268
              +N +    +   + ++ I
Sbjct: 242 DLTLNRRETSVEERRKAIMDI 262

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  189 bits (482), Expect = 1e-58
 Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 20/240 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRILG 75
           +A   T  G   V+ ++    P   E+ +++    LCHSD+    M    +    P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE +G V  +GE V G   GD V  +    C  C  C   + N C+              
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRA------------ 109

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAW 194
                   G T     S  S +EY ++D A  +     + P  A  L+  G++     + 
Sbjct: 110 -----ADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
               +  GST V+ G+G +G    +  R   A R+I VD+  ++  + +  G    V S 
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG 224

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  163 bits (415), Expect = 2e-48
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 30/245 (12%)

Query: 18  RAAIATAPGEPLVIDEVIV-DPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRI 73
           +AA      +PL I++V         +V VRI    +CH+D+   +    +      P  
Sbjct: 17  KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 76

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LGHE +G +E V E V+G+ +GD VI H       C+ CR+ +   C    F        
Sbjct: 77  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP------- 129

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR---ACLLSCGVSTGV 190
                     G  I        F+E+       V+K+   +   +      L+    T  
Sbjct: 130 ----------GLNID-----GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAY 174

Query: 191 GAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            A  +    +  G+ V I G+G +G    +  ++     +I +DV  EK ++ +R G   
Sbjct: 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH 234

Query: 250 FVNSK 254
            V+++
Sbjct: 235 VVDAR 239

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  153 bits (388), Expect = 2e-44
 Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 36/244 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A    + G  + +  V +  P   ++ V++    +C +D       +FP+  P  LGHE
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLH-GEFPSTPPVTLGHE 82

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G+V   G  V  +  G      P+    C  C  C++ + NLC               
Sbjct: 83  FCGIVVEAGSAVRDIAPGARITGDPNIS--CGRCPQCQAGRVNLCRNLRA---------- 130

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
                   G           F+EY ++      ++  T+ P        L+C +      
Sbjct: 131 -------IGIHRD-----GGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-----H 173

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
               + ++ GSTV I G G IGL   + ARL GAT +I     + K  + +  G T  V+
Sbjct: 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVD 233

Query: 253 SKNC 256
               
Sbjct: 234 PSAG 237

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  150 bits (381), Expect = 1e-43
 Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 38/249 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +  +    
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--- 118

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                         G          +++EY ++     +     +    A  L+C   T 
Sbjct: 119 --------------GINFD-----GAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159

Query: 190 VGAAWRTANVEVGSTVVIF----GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             A  R A+++   T+++     GLG++ + +A    + GA  IIGVDV  E  E  KR 
Sbjct: 160 YRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIA--KAVSGA-TIIGVDVREEAVEAAKRA 215

Query: 246 GVTEFVNSK 254
           G    +N+ 
Sbjct: 216 GADYVINAS 224

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  150 bits (380), Expect = 2e-43
 Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 29/244 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--MKDFPAVFPRILG 75
           +AA+     EPL I++V +  P   EV +RI    +C +D+  WK          P ILG
Sbjct: 5   KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE  G +  VGE +  V +GD V+ +       C  CR  K N+C               
Sbjct: 65  HENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKN------------- 110

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA--- 192
               + + G+T +       FSEY ++  +  +    ++ P  A  L+   +T +GA   
Sbjct: 111 ----QIIPGQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQ 161

Query: 193 AWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A    +      V++ G+G +    +     L     I+G+    +  +     G     
Sbjct: 162 ALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVS 221

Query: 252 NSKN 255
             K+
Sbjct: 222 EMKD 225

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  146 bits (371), Expect = 4e-42
 Identities = 63/245 (25%), Positives = 100/245 (40%), Gaps = 37/245 (15%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           ++ +    G  + + E  I +  +  EVRV+I  + LC SD+     K+    +P  LGH
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIF-KNGAHYYPITLGH 59

Query: 77  EAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           E  G +++VG  VD +  GD    +P     C  C  C     + C+ + F  S    RD
Sbjct: 60  EFSGYIDAVGSGVDDLHPGDAVACVPLLP--CFTCPECLKGFYSQCAKYDFIGS---RRD 114

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVG 191
                    G           F+EY V+   +V  +   +P         ++ G+     
Sbjct: 115 ---------G----------GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL----- 150

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
            A+  A       V+I G G+IGL   + A   GA  +  +D+ SEK  + K FG  +  
Sbjct: 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF 210

Query: 252 NSKNC 256
           NS   
Sbjct: 211 NSSEM 215

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  139 bits (353), Expect = 2e-39
 Identities = 60/249 (24%), Positives = 88/249 (35%), Gaps = 44/249 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           RA    AP E L + +  V  P   E+ VR+   S+C +D+  WK           P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVI--PHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  GVVE+VG  V     GD V    H +  C  C  CR+   ++C            
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIV--CHACPACRTGNYHVC------------ 107

Query: 133 RDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                   + +       + V     F+EY V+   +       +P   A +       V
Sbjct: 108 -------LNTQ------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV 154

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                      +   G +V+I G G IGL  A   R  GA  I+  D    +    + + 
Sbjct: 155 -----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA 209

Query: 247 VTEFVNSKN 255
               VN   
Sbjct: 210 -DRLVNPLE 217

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  137 bits (348), Expect = 1e-38
 Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 44/249 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRIL 74
            A + T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I+
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  G V  +G  V+G+  GD   V  H +  C +C  CR  + ++C            
Sbjct: 66  GHEVAGEVVEIGPGVEGIEVGDYVSVETHIV--CGKCYACRRGQYHVCQN---------- 113

Query: 133 RDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                               V     F+EY V+   ++ K   ++PP  A L   L   V
Sbjct: 114 ---------------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAV 158

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                          G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G
Sbjct: 159 D----TVLAG--PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG 212

Query: 247 VTEFVNSKN 255
               +N   
Sbjct: 213 ADYVINPFE 221

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  136 bits (345), Expect = 3e-38
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 33/251 (13%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFP 67
           A       + +   PG+ L ++   +  P  +EV +R+    +C SDV +W+   + +F 
Sbjct: 2   AAAKPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFI 60

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  F  
Sbjct: 61  VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCA 120

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSC 184
           +P  P D                        +   + A   K+   V      L   LS 
Sbjct: 121 TP--PDDGN-------------------LCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV 159

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
           G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +    K 
Sbjct: 160 GI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 214

Query: 245 FGVTEFVNSKN 255
            G    +    
Sbjct: 215 IGADLVLQISK 225

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  130 bits (329), Expect = 7e-36
 Identities = 63/241 (26%), Positives = 98/241 (40%), Gaps = 34/241 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
            +A+     + L +++  +  P   EV +++    +C SDV +++   + DF    P ++
Sbjct: 6   LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHEA G V  VG+NV  + +GD V       C  C  C+  K NLC    F  +P  P D
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP--PDD 122

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVG 191
                                 + Y V       K+   V      L   LS GV     
Sbjct: 123 GN-------------------LARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV----- 158

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
            A R A V++G+TV++ G G IGL     A+  GA  ++       + E+ K  G    +
Sbjct: 159 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTL 217

Query: 252 N 252
            
Sbjct: 218 V 218

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  129 bits (326), Expect = 1e-35
 Identities = 70/247 (28%), Positives = 105/247 (42%), Gaps = 40/247 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+  A G PL IDEV V  P   +V+V+I  + +CH+D+      D+P     P I G
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAAD-GDWPVKPTLPFIPG 62

Query: 76  HEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +G V +VG  V  V EGD V +P   + C  C  C      LC            + 
Sbjct: 63  HEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLC-----------EKQ 111

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +      G +++       + EY V D  +V  +   V       + C GV+      
Sbjct: 112 QNT------GYSVN-----GGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV--YKG 158

Query: 194 WRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
            +  +   G  VVI G+G +G      A A G       R+  VD+   K  + +R G  
Sbjct: 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL------RVAAVDIDDAKLNLARRLGAE 212

Query: 249 EFVNSKN 255
             VN+++
Sbjct: 213 VAVNARD 219

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  129 bits (326), Expect = 2e-35
 Identities = 54/249 (21%), Positives = 86/249 (34%), Gaps = 37/249 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +  +  +   P +      +     EV V +  T +C SDV FWK   +         +L
Sbjct: 17  QHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVL 76

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE+ G V +V  +V  +  GD V I P  +  C  C  C + + N C    F  +P +P
Sbjct: 77  GHESAGEVIAVHPSVKSIKVGDRVAIEPQVI--CNACEPCLTGRYNGCERVDFLSTPPVP 134

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
                      G              Y         K+   +      +   LS  +   
Sbjct: 135 -----------G----------LLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL--- 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             A  + A V +G  V+I G G IGL     A+  GA  ++  D+   + +  K      
Sbjct: 170 --AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEV 227

Query: 250 FVNSKNCGD 258
             +      
Sbjct: 228 VTHKVERLS 236

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  127 bits (322), Expect = 6e-35
 Identities = 70/247 (28%), Positives = 102/247 (41%), Gaps = 40/247 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAH-GDWPVKPKLPLIPG 60

Query: 76  HEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +G+VE VG  V  +  GD V IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC-----------EHQ 109

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           + +      G ++        ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 110 KNA------GYSVD-----GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKA 156

Query: 194 WRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
            +    + G  V I+G+G +G      A A G        ++ VD+  EK E+ K  G  
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL------NVVAVDIGDEKLELAKELGAD 210

Query: 249 EFVNSKN 255
             VN   
Sbjct: 211 LVVNPLK 217

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  124 bits (315), Expect = 7e-34
 Identities = 62/255 (24%), Positives = 95/255 (37%), Gaps = 41/255 (16%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFP 71
           P   +  I       L   ++ V  P ++E+ + +  + +CH+D+  W   D+P     P
Sbjct: 3   PETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWH-GDWPLPVKLP 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            + GHE  GVV  +GENV G   GD   I      C  C  C     + C          
Sbjct: 62  LVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC---------- 111

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTG 189
            P    S      G T        SF +Y   D      +       +   + C G++  
Sbjct: 112 -PHADLS------GYTHD-----GSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV- 158

Query: 190 VGAAWRTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGK 243
              A ++AN+  G  V I     GLGS+    A A G       R++G+D    K E+ +
Sbjct: 159 -YKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY------RVLGIDGGEGKEELFR 211

Query: 244 RFGVTEFVNSKNCGD 258
             G   F++     D
Sbjct: 212 SIGGEVFIDFTKEKD 226

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  125 bits (317), Expect = 7e-34
 Identities = 48/280 (17%), Positives = 81/280 (28%), Gaps = 60/280 (21%)

Query: 5   KPSNKTAGKPIQCRAAIATAPGEPLVIDEVIV-DPPNSHEVRVRIICTSLCHSDVTFWK- 62
           K   K     +    +      E + ++EV         E+ +++    +C SDV   + 
Sbjct: 19  KLGPKDIEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQT 77

Query: 63  ------MKDFPAVFPRILGHEAIGVVESVGENV------DGVVEGD--VVIPHFLADCTE 108
                 +      FP  LGHE  GVV   G              G+           C  
Sbjct: 78  DEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLW--CGH 135

Query: 109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIA 165
           C  C     N C                            + +  +   +F+EY  +D  
Sbjct: 136 CRPCAEGFPNHCEN-------------------------LNELGFNVDGAFAEYVKVDAK 170

Query: 166 HVVKV-------DPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
           +   +       +         L    S   +       R   +  G  VVI G G IGL
Sbjct: 171 YAWSLRELEGVYEGDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGL 227

Query: 216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           A     +  GA+++I  +    +  + K  G    ++   
Sbjct: 228 AAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTK 267

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  123 bits (312), Expect = 2e-33
 Identities = 42/251 (16%), Positives = 77/251 (30%), Gaps = 34/251 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +A       +  V+ E     P S E  VR +   +C +D                  +L
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHEA+GVV  V  N   + EGD  V                  + ++     +     + 
Sbjct: 62  GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV-STG 189
                      G            SE+      ++V++  +       +  +S    +  
Sbjct: 120 AH---------G----------YMSEFFTSPEKYLVRIPRSQAELGFLIEPISITEKALE 160

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL--CGATRIIGV---DVISEKFEIGKR 244
              A R+A     S+  + G GS+GL      ++   G   +  +   D      +I + 
Sbjct: 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE 220

Query: 245 FGVTEFVNSKN 255
              T   + + 
Sbjct: 221 LDATYVDSRQT 231

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  121 bits (305), Expect = 2e-32
 Identities = 58/256 (22%), Positives = 89/256 (34%), Gaps = 37/256 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +     + G+ +   E     P   +  VR +  + C SD+              ILGHE
Sbjct: 2   KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           A+G V  VG  V     GD VV+P  +         +                       
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVP-AITPDWRTSEVQRGYHQHSG--------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHV-------VKVDPTVPPNRACLLSCGVSTG 189
                +        V    F E+      HV         +   +P   A ++   ++TG
Sbjct: 105 ----GMLAGWKFSNVKDGVFGEF-----FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTG 155

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              A   AN+++G TV + G+G +GL    GA   GA RI  V       +I   +G T+
Sbjct: 156 FHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD 214

Query: 250 FVNSKNCGDKSVSQVL 265
            +N K      V Q+L
Sbjct: 215 IINYK--NGDIVEQIL 228

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  121 bits (305), Expect = 2e-32
 Identities = 45/248 (18%), Positives = 76/248 (30%), Gaps = 39/248 (15%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVFP 71
           +A I   P   + + +V      +  ++++R I   +C +D                   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            +LGHEAIGVVE   E+  G  +GD+V+P     C  C  C   + + C    F  +   
Sbjct: 62  LVLGHEAIGVVE---ESYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV--- 186
             D         G             E+   D  ++VK+  ++         L+      
Sbjct: 119 KMD---------G----------FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159

Query: 187 ------STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
                    V              V++ G G IG+      R  G    +       + E
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219

Query: 241 IGKRFGVT 248
                   
Sbjct: 220 QTVIEETK 227

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  102 bits (257), Expect = 3e-25
 Identities = 59/237 (24%), Positives = 87/237 (36%), Gaps = 26/237 (10%)

Query: 37  DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96
                H V ++++ T++C SD    +     A    +LGHE  G V   G +V+ +  GD
Sbjct: 29  GKKIEHGVILKVVSTNICGSDQHMVR-GRTTAQVGLVLGHEITGEVIEKGRDVENLQIGD 87

Query: 97  -VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS- 154
            V +P F   C  C  C+     +C                +R     G         + 
Sbjct: 88  LVSVP-FNVACGRCRSCKEMHTGVCL-----------TVNPARAGGAYGYV--DMGDWTG 133

Query: 155 SFSEYTVLDIAHV--VKVDPTVPPNRAC----LLSCGVSTGVGAAWRTANVEVGSTVVIF 208
             +EY ++  A    +K+               LS  + TG   A  TA V  GSTV + 
Sbjct: 134 GQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVA 192

Query: 209 GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVL 265
           G G +GLA A  ARL GA  +I  D+   +    K  G      S         Q+ 
Sbjct: 193 GAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSL--DTPLHEQIA 247

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 99.7 bits (249), Expect = 3e-24
 Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 32/262 (12%)

Query: 18  RAAIATAPGEPLVIDEV----IVDP--PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           ++ +     + L ++ V    +        H V ++++ T++C SD   ++   F     
Sbjct: 4   KSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYR-GRFIVPKG 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            +LGHE  G V   G +V+ +  GD V +P F   C  C  C+  + ++C       +  
Sbjct: 62  HVLGHEITGEVVEKGSDVELMDIGDLVSVP-FNVACGRCRNCKEARSDVCEN-----NLV 115

Query: 131 MPRDQTSRFKDLRGETIHHF-------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 183
            P      F    G  +  +       V V  +++Y +L      K           L+S
Sbjct: 116 NPDADLGAF----GFDLKGWSGGQAEYVLVP-YADYMLLKFGD--KEQAMEKIKDLTLIS 168

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
             + TG      +A V+ GS V I G G +G   A GARL GA  +I  D   E+ ++  
Sbjct: 169 DILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227

Query: 244 RFGVTEFVNSKNCGDKSVSQVL 265
             G                Q+ 
Sbjct: 228 DAGFETIDLRN--SAPLRDQID 247

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 67/250 (26%), Positives = 100/250 (40%), Gaps = 45/250 (18%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
           RA +  A G P  L + ++ V  P   EVRVR+   +L H DV   K +       P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVV++VG  V+G   GD V+ +    C  C  C + + NLC  +           
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRY----------- 110

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                  + GE  H      +++EY VL  A++      +    A  +     T    AW
Sbjct: 111 ------QILGEHRH-----GTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLT----AW 155

Query: 195 R----TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVI-----SEKFEIGKR 244
           +       V  G  V++   GS + +A  + A+L GA       VI      +K    K 
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR------VIATAGSEDKLRRAKA 209

Query: 245 FGVTEFVNSK 254
            G  E VN  
Sbjct: 210 LGADETVNYT 219

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 62/285 (21%), Positives = 105/285 (36%), Gaps = 45/285 (15%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
                ++ +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    V
Sbjct: 16  YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTV 75

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
           +P + GHE +G V +VG+ V+    GD+V +   +  C  C  C     N C        
Sbjct: 76  YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG--- 132

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV-DPTVPPNRACLLSC-GV 186
                  T                   +S+  V+   +V+++  P         L C G+
Sbjct: 133 -------TYNSPTPDEPGHTL----GGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGI 181

Query: 187 STGVGAAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS-- 236
           +T     +   R      G  V + G+G +G     LA A GA          V   +  
Sbjct: 182 TT-----YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH---------VVAFTTS 227

Query: 237 -EKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF 280
             K E  K  G  E VNS+   +       L  +D  L T++   
Sbjct: 228 EAKREAAKALGADEVVNSR---NADEMAAHLKSFDFILNTVAAPH 269

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 87.2 bits (216), Expect = 1e-19
 Identities = 47/273 (17%), Positives = 89/273 (32%), Gaps = 59/273 (21%)

Query: 12  GKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDV---------- 58
               +  A + T   +P   + +D+V V      E  V ++ +S+ ++ V          
Sbjct: 38  KDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLST 97

Query: 59  --------TFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECV 110
                       +     +   ++G +  GVV   G  V+    GD V+ H L+   E  
Sbjct: 98  FGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESS 157

Query: 111 GCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170
              +             +   P  +   F+   G            +E  ++    ++  
Sbjct: 158 DGHND------------TMLDPEQRIWGFETNFG----------GLAEIALVKSNQLMPK 195

Query: 171 DPTVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARL 223
              +    A       ST    A+R       A ++ G  V+I+G    +G    + A  
Sbjct: 196 PDHLSWEEAAAPGLVNST----AYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALA 251

Query: 224 CGATRIIGVDVIS--EKFEIGKRFGVTEFVNSK 254
            GA  I    V+S  +K EI +  G    ++  
Sbjct: 252 GGANPIC---VVSSPQKAEICRAMGAEAIIDRN 281

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 86.4 bits (214), Expect = 2e-19
 Identities = 43/256 (16%), Positives = 76/256 (29%), Gaps = 52/256 (20%)

Query: 25  PGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV------------------TFWKMKDF 66
             + L + EV +      EV V ++ +S+ ++ V                          
Sbjct: 46  VRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATR 105

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
                 +LG +  GVV   G  V     GD VI H      E        G L       
Sbjct: 106 HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVD-EQEPATHGDGMLG------ 158

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                     +  +    ET          +EY V+  + ++     +    A +     
Sbjct: 159 ----------TEQRAWGFETNF-----GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCA 203

Query: 187 STGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKF 239
            T    A+R       A ++ G  V+I+G    +G    +  +  G    + V   ++K 
Sbjct: 204 GT----AYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKE 258

Query: 240 EIGKRFGVTEFVNSKN 255
              +  G    +N   
Sbjct: 259 AAVRALGCDLVINRAE 274

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 84.6 bits (210), Expect = 5e-19
 Identities = 63/286 (22%), Positives = 99/286 (34%), Gaps = 53/286 (18%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
            P++     A      L             +VR +++   +CHSD+   K     +++P 
Sbjct: 13  HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPL 72

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPFKISPWM 131
           + GHE +G V  VG  V  V  GD V    L   C  C  C +   N C           
Sbjct: 73  VPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMIL------ 126

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-- 188
               T       G   +       +S + V +  ++++    +P +    L C G++   
Sbjct: 127 ----TYASIYHDGTITY-----GGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYS 177

Query: 189 -----GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISE- 237
                G+           G  + I GLG +G      A A G++         V VIS  
Sbjct: 178 PLKYFGLDEP--------GKHIGIVGLGGLGHVAVKFAKAFGSK---------VTVISTS 220

Query: 238 ---KFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF 280
              K E  K FG   F+ S+   D+   Q      D  + T+S   
Sbjct: 221 PSKKEEALKNFGADSFLVSR---DQEQMQAAAGTLDGIIDTVSAVH 263

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 83.0 bits (206), Expect = 2e-18
 Identities = 50/247 (20%), Positives = 78/247 (31%), Gaps = 45/247 (18%)

Query: 20  AIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRIL 74
             +T       L + E  V     H++ VR +  SL + D     ++        FP + 
Sbjct: 30  EWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDK--LVLETGMGLDLAFPFVP 87

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             +  GVVE+VG++V     GD VI  F     + +   + +                  
Sbjct: 88  ASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYET------LGGAHP 141

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                                 SEY VL     V    ++    A  L C   T    AW
Sbjct: 142 GV-------------------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT----AW 178

Query: 195 R----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII--GVDVISEKFEIGKRFGVT 248
                  ++  G  VV+ G G + L   + A+  GA  I+        EK +     G  
Sbjct: 179 FALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR---EKLDRAFALGAD 235

Query: 249 EFVNSKN 255
             +N   
Sbjct: 236 HGINRLE 242

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 81.1 bits (201), Expect = 8e-18
 Identities = 62/286 (21%), Positives = 99/286 (34%), Gaps = 53/286 (18%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
              +     A  P   L      +      +V +RIIC  +CH+D+   K     + +P 
Sbjct: 6   AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPM 65

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           + GHE +G V  VG +V     GD+V +   +  C  C  C       C    +      
Sbjct: 66  VPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW------ 119

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-- 188
               +     + G+          F++ TV+    VVK+   +   +A  L C GV+   
Sbjct: 120 ----SYNDVYINGQPTQ-----GGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYS 170

Query: 189 -----GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISE- 237
                G+           G    I GLG +G     +A A G           V VIS  
Sbjct: 171 PLSHFGLKQP--------GLRGGILGLGGVGHMGVKIAKAMGHH---------VTVISSS 213

Query: 238 ---KFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVSF 280
              + E  +  G  ++V      D++    L    D  + T+ V  
Sbjct: 214 NKKREEALQDLGADDYVIGS---DQAKMSELADSLDYVIDTVPVHH 256

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 78.4 bits (194), Expect = 8e-17
 Identities = 56/254 (22%), Positives = 92/254 (36%), Gaps = 40/254 (15%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            +Q +     +  E     +         +V + I+   +CHSD+     +    ++P I
Sbjct: 2   RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMI 61

Query: 74  LGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE  G+++ VG+ V     GDVV +  F+  C  C  C+  +   C+   F       
Sbjct: 62  PGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYD---- 117

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVG 191
                       E          +S   V+D  +V+ VD   P  +   L C G++T   
Sbjct: 118 ----CLDSFHDNEPHM-----GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITT--- 165

Query: 192 AAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFE 240
             +   + + V  G+ V + G G +G      AVA GA          V V +    K +
Sbjct: 166 --YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAE---------VSVFARNEHKKQ 214

Query: 241 IGKRFGVTEFVNSK 254
                GV  F    
Sbjct: 215 DALSMGVKHFYTDP 228

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 78.6 bits (194), Expect = 8e-17
 Identities = 48/262 (18%), Positives = 76/262 (29%), Gaps = 63/262 (24%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
           P Q  A       E  V +          +V VR+   ++  SD     M+   A     
Sbjct: 9   PPQQTALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAF 65

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LG +  G V +VG +V  +  GD V                           ++ P  P 
Sbjct: 66  LGTDYAGTVVAVGSDVTHIQVGDRVY----------------------GAQNEMCPRTPD 103

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST----- 188
                                +FS+YTV       K+   +   +A  L  G+ST     
Sbjct: 104 Q-------------------GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAM 144

Query: 189 ---GVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEK-F 239
              G+        +         V+++G   +      +  RL G   I      S   F
Sbjct: 145 KLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIA---TCSPHNF 201

Query: 240 EIGKRFGVTEFV--NSKNCGDK 259
           ++ K  G  E     + N    
Sbjct: 202 DLAKSRGAEEVFDYRAPNLAQT 223

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 56/248 (22%)

Query: 14  PIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAV 69
           P + RA +    G+P   + +  + +      +VRV+++   +  SD+   +        
Sbjct: 24  PARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPE 83

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P + G+E +  V +VG NV G+  GD VI              +  G            
Sbjct: 84  LPAVGGNEGVAQVVAVGSNVTGLKPGDWVI-----------PANAGLG------------ 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                    ++    V     +++V   +P   A  L     T 
Sbjct: 121 -------------------------TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTA 155

Query: 190 VGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV---DVISEKFEIGKRF 245
                    ++ G +V+       +G AV + A   G   I  V     I +  +  K  
Sbjct: 156 YRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSL 215

Query: 246 GVTEFVNS 253
           G    +  
Sbjct: 216 GAEHVITE 223

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 73.2 bits (180), Expect = 4e-15
 Identities = 41/283 (14%), Positives = 74/283 (26%), Gaps = 81/283 (28%)

Query: 15  IQCRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF--------- 60
           I  +A + T  GEP         E+  D    +EV V+ + + +  SD+           
Sbjct: 2   ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61

Query: 61  -WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL 119
                          G+E +  V  VG NV  +  GD VIP  +   T            
Sbjct: 62  AKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGT------------ 109

Query: 120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD-------- 171
                                               +  + + +    +K+         
Sbjct: 110 ------------------------------------WRTHALGNDDDFIKLPNPAQSKAN 133

Query: 172 ---PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGA 226
                +  N+   +S    T          +  G    I   G  ++G   ++  +L   
Sbjct: 134 GKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF 193

Query: 227 TRIIGV----DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVL 265
              I V      + E     K  G T+ +       +     +
Sbjct: 194 -NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTI 235

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 57/279 (20%), Positives = 95/279 (34%), Gaps = 53/279 (18%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRIL 74
           A  +    +     +    P   H++ ++I    +C SD+      W     P V     
Sbjct: 11  AIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLV-V--- 66

Query: 75  GHEAIGVVESVGENVD-GVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE +G V  +G   + G+  G  V +   +  C EC  C++     C+ F         
Sbjct: 67  GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVT------- 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVG 191
              T       G      VS   ++ Y  +    VV +   +P + A  L C G++    
Sbjct: 120 ---TYSQPYEDGY-----VSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV--- 168

Query: 192 AAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFE 240
             +          G  V I GLG IG     ++ A GA            VIS    K E
Sbjct: 169 --YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE---------TYVISRSSRKRE 217

Query: 241 IGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISVS 279
              + G   ++ +    +    +     +DL ++  S  
Sbjct: 218 DAMKMGADHYIATLE--EGDWGEKYFDTFDLIVVCASSL 254

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 66.8 bits (164), Expect = 6e-13
 Identities = 40/242 (16%), Positives = 78/242 (32%), Gaps = 55/242 (22%)

Query: 18  RAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRI 73
           +       G P   L ++   ++P   +EV VR++   +  SD+             P I
Sbjct: 6   KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNI 65

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
            G+E +G+VE+VG  V   + G  V+P                                 
Sbjct: 66  PGYEGVGIVENVGAFVSRELIGKRVLP--------------------------------- 92

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
                                ++ EY       VV +  ++    A  +     T     
Sbjct: 93  ----------------LRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTC 136

Query: 194 WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
             T N++    +++     +IG   A+ +++    R+I V   ++  E   R G    ++
Sbjct: 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVID 195

Query: 253 SK 254
           + 
Sbjct: 196 TS 197

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 39/251 (15%), Positives = 72/251 (28%), Gaps = 72/251 (28%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVF 70
           +A      G P  L + +        +++ +++   SL   D      + +  K      
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P  LG++  G V  +G +V+ V  GD V+                               
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKVM----------------------GIA------ 99

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
                   F D              ++EY       +++    +   +A      + T  
Sbjct: 100 -------GFPDHPC----------CYAEYVCASPDTIIQKLEKLSFLQA----ASLPTAG 138

Query: 191 GAAW---RTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEI 241
             A      A V+ G  V+I     G+G +   LA  +G  +                  
Sbjct: 139 LTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-------KRNHAF 191

Query: 242 GKRFGVTEFVN 252
            K  G  + +N
Sbjct: 192 LKALGAEQCIN 202

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 51/246 (20%), Positives = 78/246 (31%), Gaps = 57/246 (23%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF---WKMKDFPAVFPR 72
            AA+    G P   V +EV V  P   +VR+R     +   D                P 
Sbjct: 3   MAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ++G EA  VVE VG  V     G+ V       C   +G                     
Sbjct: 63  VVGFEAAAVVEEVGPGVTDFTVGERV-----CTCLPPLG--------------------- 96

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS--TGV 190
                                 ++S+  +     ++KV   +  +   L    +   T  
Sbjct: 97  ----------------------AYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQ 134

Query: 191 GAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
               +T  V+ G  V+I    G +G  +   AR  GAT +IG     EK E  ++ G   
Sbjct: 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT-VIGTVSTEEKAETARKLGCHH 193

Query: 250 FVNSKN 255
            +N   
Sbjct: 194 TINYST 199

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 60.7 bits (148), Expect = 8e-11
 Identities = 38/250 (15%), Positives = 69/250 (27%), Gaps = 70/250 (28%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
                   G P  L   E     P  +E++V      +   D       +     P+   
Sbjct: 3   TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPS--- 59

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
             LG EA G+V  VG  V  +  GD V           +G                    
Sbjct: 60  -GLGTEAAGIVSKVGSGVKHIKAGDRV-----VYAQSALG-------------------- 93

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLSCGVSTG 189
                                  ++S    +       +   +   +A    L      G
Sbjct: 94  -----------------------AYSSVHNIIADKAAILPAAISFEQAAASFLK-----G 125

Query: 190 VGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           +       +T  ++     +     G +GL   + A+  GA  +IG    ++K +   + 
Sbjct: 126 LTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQSALKA 184

Query: 246 GVTEFVNSKN 255
           G  + +N + 
Sbjct: 185 GAWQVINYRE 194

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 52/257 (20%), Positives = 79/257 (30%), Gaps = 84/257 (32%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
           +    +  G P  L   +   + P    V VR     L   D  +    +     P+   
Sbjct: 3   KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPS--- 59

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
             LG E  GVVE+VG+ V     GD V     A  T  +G                    
Sbjct: 60  -GLGAEGAGVVEAVGDEVTRFKVGDRV-----AYGTGPLG-------------------- 93

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                  ++SE  VL  A++VK+      +        VS    
Sbjct: 94  -----------------------AYSEVHVLPEANLVKL-----AD-------SVSFEQA 118

Query: 192 AAW------------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238
           AA             +T  V+ G  ++     G +G    + A+  GA  +IG     EK
Sbjct: 119 AALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSPEK 177

Query: 239 FEIGKRFGVTEFVNSKN 255
               K  G  E ++  +
Sbjct: 178 AAHAKALGAWETIDYSH 194

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 59/244 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +  +    G    +  ++  V   +  E+ ++   T + + +  F K   +P   P +LG
Sbjct: 10  KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGI-YPCEKPYVLG 68

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            EA G V + G+ V     GD V                                     
Sbjct: 69  REASGTVVAKGKGVTNFEVGDQVA------------------------------------ 92

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYT-VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA-- 192
                         ++S S+F++Y+ +     V+K+          L + G+   + A  
Sbjct: 93  --------------YISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALS 138

Query: 193 -AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
                 +V+ G  V++F   G +GL + +  ++ GA   I V    EK +I K +G    
Sbjct: 139 FTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAH-TIAVASTDEKLKIAKEYGAEYL 197

Query: 251 VNSK 254
           +N+ 
Sbjct: 198 INAS 201

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 42/264 (15%), Positives = 75/264 (28%), Gaps = 68/264 (25%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           +  E    ++  + +              +  +  V  P   ++ VR     +  SD+ +
Sbjct: 13  LGTENLYFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINY 72

Query: 61  WKMKD---FPAVFPRILGHEAIGVVESVGENVDG-VVEGDVVIPHFLADCTECVGCRSKK 116
                        P  +G E IG V ++G +       G  V                  
Sbjct: 73  --SAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA----------------- 113

Query: 117 GNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176
                                            +++  SF+EYTV+  +    V P+V P
Sbjct: 114 ---------------------------------YMAPGSFAEYTVVPASIATPV-PSVKP 139

Query: 177 NRACLLSCGVSTGVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIG 231
               LL  G +     A+        +  G  V++    G  G    + ++      +IG
Sbjct: 140 EYLTLLVSGTT-----AYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIG 193

Query: 232 VDVISEKFEIGKRFGVTEFVNSKN 255
                EK    K  G    +N K 
Sbjct: 194 TCSSDEKSAFLKSLGCDRPINYKT 217

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-----MKDFPAVFPR 72
           AA+      P V+ ++    P   +V V+I  +     D    K             P 
Sbjct: 9  IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLD---AKIRAGEAPHAQQPLPA 65

Query: 73 ILGHEAIGVVESVGENVDGVVEGDVV 98
          ILG +  G V +VG  VD    GD V
Sbjct: 66 ILGMDLAGTVVAVGPEVDSFRVGDAV 91

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 18 RAAIATAPG---EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
                A       + ++ V +    + ++ V+     +   D  F K          + 
Sbjct: 3  EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62

Query: 75 GHEAIGVVESVGENVDGVVEGDVV 98
          G +  GV+  VG  VD  + G  V
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRV 86

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 35/276 (12%), Positives = 71/276 (25%), Gaps = 89/276 (32%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF------------ 60
             +Q R+ I ++    L +D +    P   EV +RI  + L  SD+              
Sbjct: 4   SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKA 63

Query: 61  -----------------WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL 103
                             +           +G+E  GVV   G +          +    
Sbjct: 64  SGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV---- 119

Query: 104 ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD 163
                                                          +  + +S+Y  + 
Sbjct: 120 ---------------------------------------------AAIGGAMYSQYRCIP 134

Query: 164 IAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGLGS-IGLAVA 218
               + +     P   A      ++     A     T  +E  S +V     S +G  + 
Sbjct: 135 ADQCLVLPEGATPADGASSFVNPLT-----ALGMVETMRLEGHSALVHTAAASNLGQMLN 189

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
           +     G  +++ +    E+ ++ K  G     N+ 
Sbjct: 190 QICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAA 224

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 47/247 (19%), Positives = 80/247 (32%), Gaps = 54/247 (21%)

Query: 11  AGKPIQCRAAIATAPGEP--LVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMK-DF 66
           A      RA      G P  L +   I  P P  H+V +++    +   +          
Sbjct: 24  ATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR 83

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             + P   G +  GV+E+VG+N     +GD V        +  +      G         
Sbjct: 84  KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVF------TSSTIS-----G--------- 123

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                                        ++EY +     V K+   +   +   +    
Sbjct: 124 ----------------------------GYAEYALAADHTVYKLPEKLDFKQGAAIGIPY 155

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            T   A   +A V+ G +V++ G    +GLA  + AR  G  +I+G     E  +I  + 
Sbjct: 156 FTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN 214

Query: 246 GVTEFVN 252
           G  E  N
Sbjct: 215 GAHEVFN 221

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 18 RAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFP 71
          +A     P             + +  P  HE+ V+I   S+   D    K +    +  P
Sbjct: 4  KAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVD---TKQRLMDVSKAP 60

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
          R+LG +AIGVVESVG  V    +GD+V
Sbjct: 61 RVLGFDAIGVVESVGNEVTMFNQGDIV 87

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 45/251 (17%), Positives = 74/251 (29%), Gaps = 55/251 (21%)

Query: 6   PSNKTAGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM 63
                   P   +A  A +   P  LV  +V       + V V +    +C  D    K 
Sbjct: 11  TLEAQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKG 70

Query: 64  K-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 122
           +       P + G E  GVV S           +                          
Sbjct: 71  EYQLKMEPPFVPGIETAGVVRSA---------PEGS------------------------ 97

Query: 123 FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 182
              K                 G+ +  F  +  ++E   +  ++++   P +    A  L
Sbjct: 98  -GIKP----------------GDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVAL 140

Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
                T   A  R   +  G TV++ G  G IG A  + A+  GA ++I V   +   E 
Sbjct: 141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEF 199

Query: 242 GKRFGVTEFVN 252
            K  G    + 
Sbjct: 200 VKSVGADIVLP 210

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 18  RAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
           +A     P        L+  E+    P  H++ V +   S+   D    +         +
Sbjct: 24  KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWK 83

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVV 98
           ++G++A G+V +VG +V     GD V
Sbjct: 84  VIGYDAAGIVSAVGPDVTLFRPGDEV 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 38/257 (14%), Positives = 71/257 (27%), Gaps = 98/257 (38%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           ++ ++        ID +I+            +          FW +              
Sbjct: 43  KSILSKE-----EIDHIIMSKDA--VSGTLRL----------FWTLLSKQE--------- 76

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
                E V + V+ V+  +     FL                    P K     P   T 
Sbjct: 77  -----EMVQKFVEEVLRINY---KFLMS------------------PIKTEQRQPSMMTR 110

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
            + + R      +     F++Y V  +   +K+       R  LL               
Sbjct: 111 MYIEQRDRL---YNDNQVFAKYNVSRLQPYLKL-------RQALL--------------- 145

Query: 198 NVEVGSTVVIFGLGSIG---LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNS 253
            +     V+I G+   G   +A  +                S K +    F +  F +N 
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVA-LDVCL-------------SYKVQCKMDFKI--FWLNL 189

Query: 254 KNCG-DKSVSQVLLSIY 269
           KNC   ++V ++L  + 
Sbjct: 190 KNCNSPETVLEMLQKLL 206

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 25/103 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDP--PNSHEVRVRIICTSLCHSDVTFWKM---------- 63
            A +    G+   L   + ++ P     +EV V++   S+   D     M          
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPID---VNMRSGYGATALN 79

Query: 64  --------KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV 98
                   K     FP  LG +  GVV   G +V     GD V
Sbjct: 80  MKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-----DFPAVF 70
          RA +    G    L +    +  P   E+++R+    L   D+    M      D P   
Sbjct: 5  RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDL----MVRQGNIDNPPKT 60

Query: 71 PRILGHEAIGVVESVGENVDGVVEGDVVI 99
          P + G E  G+VE++G++V G   GD V+
Sbjct: 61 PLVPGFECSGIVEALGDSVKGYEIGDRVM 89

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRIL 74
           R     + G P  +VI +  +      EV VR     +   D+   +     P     IL
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89

Query: 75  GHEAIGVVESVGENVDGVVEGDVVI 99
           G E  G +  VG  V G   GD V 
Sbjct: 90  GLELSGEIVGVGPGVSGYAVGDKVC 114

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 9   KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFP 67
              G       +   A    L    + V  P   +V +++   S+  SDV F K +   P
Sbjct: 17  VGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQP 76

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVE-GDVVI 99
            V  R  G E +G + + G+        G  V 
Sbjct: 77  RVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVA 109

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88
           LV +     P    EVR+ +    +   D     +  +P      LG E  GVV   G  
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDA-LIALGMYPG--VASLGSEGAGVVVETGPG 282

Query: 89  VDGVVEGDVVI 99
           V G+  GD V+
Sbjct: 283 VTGLAPGDRVM 293

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
            A     PG P  L + EV    P   EV +++  ++L  +D+   +   D P     IL
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNIL 83

Query: 75  GHEAIGVVESVGENVDGVV-EGDVV 98
           G EA G V  +G    G    GD  
Sbjct: 84  GLEASGHVAELGPGCQGHWKIGDTA 108

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           G  ++I+G G IG ++A  A   G   +IGV+
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGM-HVIGVN 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.97
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.9
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.6
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.5
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.32
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.39
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.2
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.16
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.14
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.04
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.95
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.93
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.93
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.86
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.75
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.73
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.59
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.58
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.48
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.47
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.4
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.35
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.16
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.16
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.15
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.14
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.12
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.1
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.02
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.01
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.97
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.93
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	95.87
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	95.87
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.86
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.85
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.84
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	95.83
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.75
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.74
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.73
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	95.71
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.7
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	95.69
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	95.69
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	95.66
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.65
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.65
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	95.59
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	95.55
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	95.51
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	95.48
4dqx_A	277	Probable oxidoreductase protein; structural genomi	95.45
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.41
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	95.4
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	95.4
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	95.4
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	95.4
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	95.38
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.38
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.37
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	95.29
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.28
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.27
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.25
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	95.24
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.24
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	95.23
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	95.22
3imf_A	257	Short chain dehydrogenase; structural genomics, in	95.18
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.16
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.11
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.11
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.11
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.1
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	95.1
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.06
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.04
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.04
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.03
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	95.02
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.01
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	95.01
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.99
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.99
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	94.98
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.96
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	94.95
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	94.94
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	94.93
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.92
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	94.91
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	94.9
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	94.89
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	94.88
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	94.88
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	94.87
1xq1_A	266	Putative tropinone reducatse; structural genomics,	94.87
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	94.86
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.83
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	94.83
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.83
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.82
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.82
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	94.81
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.8
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.8
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.8
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.77
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.76
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.75
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	94.75
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	94.75
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.74
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	94.66
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.63
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.63
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	94.62
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.62
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	94.62
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	94.62
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	94.61
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	94.59
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	94.58
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.58
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	94.5
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	94.49
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.49
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.48
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.47
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.46
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.45
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	94.44
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	94.43
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	94.42
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	94.42
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.39
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	94.38
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	94.38
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.36
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	94.35
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.34
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.34
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.33
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	94.32
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	94.31
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.31
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.3
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	94.29
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	94.29
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.27
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.27
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	94.26
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	94.26
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	94.23
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	94.21
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	94.2
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	94.15
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	94.15
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.13
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.13
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	94.13
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.04
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.04
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	94.02
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	93.99
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	93.97
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	93.96
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.95
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	93.93
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	93.92
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	93.92
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.92
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	93.9
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.89
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.89
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.89
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.89
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.88
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.88
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.85
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	93.85
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.83
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.81
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.77
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.75
1xkq_A	280	Short-chain reductase family member (5D234); parra	93.74
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	93.73
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.72
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	93.69
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	93.68
1spx_A	278	Short-chain reductase family member (5L265); paral	93.68
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	93.68
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	93.61
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.61
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	93.6
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	93.57
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	93.57
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	93.55
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	93.54
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	93.52
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	93.52
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.51
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.49
1xhl_A	297	Short-chain dehydrogenase/reductase family member	93.49
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	93.48
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.46
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	93.45
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.45
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	93.4
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.4
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	93.39
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.35
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.29
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	93.27
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.26
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	93.24
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	93.15
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.12
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	93.1
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	93.1
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	93.08
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.94
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.88
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	92.87
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	92.86
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.83
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.83
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.83
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	92.81
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.8
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	92.78
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	92.77
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.74
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	92.73
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	92.7
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	92.64
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	92.59
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	92.5
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	92.49
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.48
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.46
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	92.45
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	92.37
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.26
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	92.26
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	92.22
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.22
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.22
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	92.21
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	92.21
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	92.15
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.13
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.12
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	92.12
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	92.11
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	92.1
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	92.07
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	92.04
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	92.03
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	91.98
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.94
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	91.92
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	91.91
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	91.86
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	91.84
1xq6_A	253	Unknown protein; structural genomics, protein stru	91.82
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	91.79
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	91.77
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	91.76
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	91.76
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	91.74
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.72
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.68
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.63
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	91.62
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	91.59
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	91.52
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	91.49
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.45
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	91.34
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.33
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	91.32
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	91.32
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.22
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.2
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	91.18
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	91.18
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	91.17
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.16
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	91.15
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	91.15
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	91.13
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	91.07
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	91.06
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	91.01
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	90.98
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	90.97
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	90.93
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	90.85
4hb9_A	412	Similarities with probable monooxygenase; flavin,	90.81
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.77
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	90.76
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	90.7
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	90.67
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	90.64
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	90.62
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	90.6
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.56
3l07_A	285	Bifunctional protein fold; structural genomics, ID	90.53
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	90.45
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	90.41
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	90.37
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	90.36
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	90.27
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	90.24
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.23
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	90.22
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	90.18
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	90.14
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	90.06
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	90.04
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	89.95
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.94
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	89.93
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	89.91
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	89.8
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	89.79
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	89.75
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	89.73
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	89.73
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	89.71
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	89.69
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	89.68
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	89.64
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	89.62
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	89.61
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.55
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	89.51
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	89.51
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	89.49
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.46
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	89.45
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	89.45
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.42
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	89.32
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	89.31
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	89.29
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	89.27
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	89.22
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	89.2
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	89.19
4e4y_A	244	Short chain dehydrogenase family protein; structur	89.02
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	88.93
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.87
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	88.87
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	88.73
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	88.66
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	88.6
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	88.59
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	88.58
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	88.58
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	88.56
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	88.5
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	88.46
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	88.42
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	88.27
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	88.22
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	88.19
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	88.19
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	88.16
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	88.15
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.14
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	88.13
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	88.05
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	88.03
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.02
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	87.94
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	87.91
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	87.85
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	87.76
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	87.72
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	87.71
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	87.54
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	87.46
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	87.37
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	87.26
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	87.17
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	87.14
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.1
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	86.98
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	86.87
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	86.85
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	86.84
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	86.83
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	86.83
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	86.82
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	86.8
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	86.74
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	86.68
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	86.6
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	86.57
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	86.53
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	86.41
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	86.31
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	86.3
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	86.27
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.25
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	86.22
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	86.21
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	86.19
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	86.17
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	86.17
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	86.14
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	86.11
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	86.11
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	86.08
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	86.07
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	86.05
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	86.05
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	86.0
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	85.99
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	85.95
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	85.94
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	85.94
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	85.93
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	85.86
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	85.77
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	85.75
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	85.68
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	85.68
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	85.67

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-49  Score=367.57  Aligned_cols=266  Identities=50%  Similarity=0.866  Sum_probs=234.9

Q ss_pred             CCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      .+++++|||+++++++++++++++|.|+|+++||||||+++|||++|++++.|..+...+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~   82 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVT   82 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCC
Confidence            44678999999999998899999999999999999999999999999999999877667899999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCC-CCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      +|++||||++.+..+|+.|.+|+.|++++|++.......|+. .+|..+|. .+|....++.+.|+|+||++++.+.+++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~  161 (378)
T 3uko_A           83 EVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFS-VNGKPIYHFMGTSTFSQYTVVHDVSVAK  161 (378)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred             cCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccc-cCCcccccccCCcceEeEEEechhheEE
Confidence            999999999999999999999999999999986543333433 34422232 2445555666678999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++
T Consensus       162 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  241 (378)
T 3uko_A          162 IDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNE  241 (378)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCE
T ss_pred             CCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcE
Confidence            99999999999999999999998888899999999999999999999999999999988999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEEe
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      ++|+++ .++++.+.+++++++|+|.++.
T Consensus       242 vi~~~~-~~~~~~~~i~~~~~gg~D~vid  269 (378)
T 3uko_A          242 FVNPKD-HDKPIQEVIVDLTDGGVDYSFE  269 (378)
T ss_dssp             EECGGG-CSSCHHHHHHHHTTSCBSEEEE
T ss_pred             EEcccc-CchhHHHHHHHhcCCCCCEEEE
Confidence            999873 1278999999999887765553

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=4.6e-47  Score=349.67  Aligned_cols=264  Identities=42%  Similarity=0.718  Sum_probs=224.7

Q ss_pred             CCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      .++|++|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|..+.. +|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-SSBCCCCSEEEEEEEECTTCC
T ss_pred             CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCC-CCcccCcCceEEEEEECCCCC
Confidence            4577899999999998779999999999999999999999999999999999876543 799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      +|++||||++.+..+|+.|.+|+.|++++|++.....+.|+..+|..++. ..|..+.++...|+|+||+++|.++++++
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~i  160 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKI  160 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCccccc-ccccccccccCCccCeeEEEEchHHeEEC
Confidence            99999999999999999999999999999998754322244333311110 01112222223469999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      |+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++
T Consensus       161 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v  240 (374)
T 2jhf_A          161 DAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC  240 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEE
T ss_pred             CCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceE
Confidence            99999999999999999999988788899999999999999999999999999999789999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +|+++ .++++.+.+++++++++|.++
T Consensus       241 i~~~~-~~~~~~~~~~~~~~~g~D~vi  266 (374)
T 2jhf_A          241 VNPQD-YKKPIQEVLTEMSNGGVDFSF  266 (374)
T ss_dssp             ECGGG-CSSCHHHHHHHHTTSCBSEEE
T ss_pred             ecccc-cchhHHHHHHHHhCCCCcEEE
Confidence            98763 125688889998877775554

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=1.6e-47  Score=352.44  Aligned_cols=264  Identities=44%  Similarity=0.757  Sum_probs=224.2

Q ss_pred             CCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC
Q 023561           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      +.+++|||+++.+++++++++++|.|+|+++||||||+++|||++|++++.|..+...+|.++|||++|+|+++|+++++
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~   81 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence            46789999999999877999999999999999999999999999999999997665567999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      |++||||++.+..+|+.|.+|+.|++++|++.....+.|+..+|..++. ..|..+.++...|+|+||+++|.++++++|
T Consensus        82 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCccccc-ccccccccccCCccceeEEEEchhheEECC
Confidence            9999999999999999999999999999998542111133222211110 112222223334699999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      +++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi  240 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI  240 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe
Confidence            99999999999999999999887888999999999999999999999999999997899999999999999999999999


Q ss_pred             cCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          252 NSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      |+++ .++++.+.+++++++|+|.++
T Consensus       241 ~~~~-~~~~~~~~v~~~~~~g~D~vi  265 (373)
T 2fzw_A          241 NPQD-FSKPIQEVLIEMTDGGVDYSF  265 (373)
T ss_dssp             CGGG-CSSCHHHHHHHHTTSCBSEEE
T ss_pred             cccc-ccccHHHHHHHHhCCCCCEEE
Confidence            8763 125688899999887775554

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.4e-47  Score=349.84  Aligned_cols=265  Identities=44%  Similarity=0.732  Sum_probs=225.5

Q ss_pred             CCCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhh-hhhcCCCCCCCCcccccceeEEEEEeCCC
Q 023561           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVT-FWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        10 ~~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~-~~~g~~~~~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      |.+.+++|||+++.+++++++++++|.|+|+++||||||++++||++|++ ++.|..+ ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~   80 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence            45678899999999998779999999999999999999999999999999 8888765 467999999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEE
Q 023561           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (280)
Q Consensus        89 v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  168 (280)
                      +++|++||||++.+..+|+.|.+|+.|++++|++.....+.|+..+|..++. ..|....++...|+|+||+++|.++++
T Consensus        81 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~  159 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (374)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccc-cCCcccccccCCccceeEEEEchhheE
Confidence            9999999999999999999999999999999998654222244333311110 111122222234699999999999999


Q ss_pred             EcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       169 ~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus       160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~  239 (374)
T 1cdo_A          160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT  239 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence            99999999999999999999999887888999999999999999999999999999997899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++|+++ .++++.+.+++++++++|.++
T Consensus       240 ~vi~~~~-~~~~~~~~~~~~~~~g~D~vi  267 (374)
T 1cdo_A          240 DFVNPND-HSEPISQVLSKMTNGGVDFSL  267 (374)
T ss_dssp             EEECGGG-CSSCHHHHHHHHHTSCBSEEE
T ss_pred             eEEeccc-cchhHHHHHHHHhCCCCCEEE
Confidence            9998763 125688899998887775554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=6.1e-47  Score=348.75  Aligned_cols=263  Identities=41%  Similarity=0.708  Sum_probs=223.0

Q ss_pred             CCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      .+.|++|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|..+ ..+|.++|||++|+|+++|++++
T Consensus         4 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~   82 (373)
T 1p0f_A            4 AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVT   82 (373)
T ss_dssp             TTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCC
T ss_pred             cCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECCCCC
Confidence            34678999999999987799999999999999999999999999999999998765 46799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      +|++||||++.+..+|+.|.+|+.|++++|++.......|+..+|..++. ..|..+.++...|+|+||+++|.++++++
T Consensus        83 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~i  161 (373)
T 1p0f_A           83 CVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKI  161 (373)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEEE
T ss_pred             ccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccc-cCCcccccccCCccceeEEEEchhhEEEC
Confidence            99999999999999999999999999999998654211233322211110 01111122223469999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      |++++++ ||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++
T Consensus       162 P~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  240 (373)
T 1p0f_A          162 DPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC  240 (373)
T ss_dssp             CTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEE
T ss_pred             CCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEE
Confidence            9999999 999999999999988788899999999999999999999999999999789999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +|+++ .++++.+.+++++++|+|.++
T Consensus       241 i~~~~-~~~~~~~~i~~~t~gg~Dvvi  266 (373)
T 1p0f_A          241 LNPKD-YDKPIYEVICEKTNGGVDYAV  266 (373)
T ss_dssp             ECGGG-CSSCHHHHHHHHTTSCBSEEE
T ss_pred             Eeccc-ccchHHHHHHHHhCCCCCEEE
Confidence            98863 125688999999887775554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=8.3e-47  Score=348.22  Aligned_cols=264  Identities=42%  Similarity=0.711  Sum_probs=222.7

Q ss_pred             CCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      .+.|++|||+++.+++++++++++|.|+|+++||||||++++||++|++++.|. +...+|.++|||++|+|+++|++++
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCc
Confidence            456789999999999877999999999999999999999999999999999886 4446799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCC----CCcCCCCCCCCCccccccCCceeecccccceeeeeEEeeccc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP----FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~----~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  166 (280)
                      +|++||||++.+..+|+.|.+|+.|++++|++..    ...+.|+..+|..++. ..|....++...|+|+||+++|+++
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~  160 (376)
T 1e3i_A           82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEAN  160 (376)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred             cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccc-cCCcccccccCCccceeEEEecccc
Confidence            9999999999999999999999999999999854    1111233222211100 0111112222346999999999999


Q ss_pred             EEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       167 ~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      ++++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|
T Consensus       161 ~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG  240 (376)
T 1e3i_A          161 LARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG  240 (376)
T ss_dssp             EEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             EEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC
Confidence            99999999999999999999999998888899999999999999999999999999999988999999999999999999


Q ss_pred             CcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          247 VTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       247 a~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++|+++ .++++.+.+++++++|+|.++
T Consensus       241 a~~vi~~~~-~~~~~~~~v~~~~~~g~Dvvi  270 (376)
T 1e3i_A          241 ATDCLNPRE-LDKPVQDVITELTAGGVDYSL  270 (376)
T ss_dssp             CSEEECGGG-CSSCHHHHHHHHHTSCBSEEE
T ss_pred             CcEEEcccc-ccchHHHHHHHHhCCCccEEE
Confidence            999998863 125688899999887775554

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.2e-47  Score=348.37  Aligned_cols=249  Identities=24%  Similarity=0.383  Sum_probs=213.3

Q ss_pred             CCCCCCCCCCCCCcceeeeeeecCCCCCcEEEEeecCC-CCCCeEEEEeeeeecChhhhhhhhcCCC---CCCCCccccc
Q 023561            1 MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGH   76 (280)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~l~~~~~~~p~-~~~~eVlIkv~~~~i~~~D~~~~~g~~~---~~~~p~i~G~   76 (280)
                      |-++++...+ ..+++|||+++++++++++++++|.|+ |+++||||||+++|||++|++++.|.++   ...+|.++||
T Consensus         1 ~~~~~~~~~~-~~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~   79 (359)
T 1h2b_A            1 MRIEQDFSQS-LGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGH   79 (359)
T ss_dssp             -----------------CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCC
T ss_pred             Cchhhhhhhc-CChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCc
Confidence            4555554333 235689999999998779999999999 9999999999999999999999998764   3467999999


Q ss_pred             ceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeeccccccee
Q 023561           77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (280)
Q Consensus        77 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~  156 (280)
                      |++|+|+++|+++++|++||||+..+..+|+.|.+|+.|++++|++...   +|...+|                   +|
T Consensus        80 E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~  137 (359)
T 1h2b_A           80 ENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GF  137 (359)
T ss_dssp             CEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SS
T ss_pred             CceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccCCCC-------------------cc
Confidence            9999999999999999999999999889999999999999999998754   4555556                   99


Q ss_pred             eeeEEeecccEEEcCCCCChhhhc---ccchhhHHHHHHHHHH-cCCCCCCEEEEECccHHHHHHHHHHHHc-CCCeEEE
Q 023561          157 SEYTVLDIAHVVKVDPTVPPNRAC---LLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIG  231 (280)
Q Consensus       157 ~~~~~~~~~~~~~iP~~ls~~~aa---~l~~~~~ta~~~l~~~-~~~~~g~~VlI~G~g~~G~~a~~la~~~-g~~~vi~  231 (280)
                      +||+++|.++++++|+++++++||   .+.+++.|||+++.+. .++++|++|||+|+|++|++++|+|+.+ |+ +|++
T Consensus       138 aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~  216 (359)
T 1h2b_A          138 AEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIA  216 (359)
T ss_dssp             BSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEE
T ss_pred             cceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEE
Confidence            999999999999999999999999   7888999999977655 8999999999999999999999999999 99 8999


Q ss_pred             EcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          232 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       232 ~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++++|+++++++|+++++|+++   + +.+.+++++++ |+|.++
T Consensus       217 ~~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~v~~~~~g~g~Dvvi  259 (359)
T 1h2b_A          217 LDVKEEKLKLAERLGADHVVDARR---D-PVKQVMELTRGRGVNVAM  259 (359)
T ss_dssp             EESSHHHHHHHHHTTCSEEEETTS---C-HHHHHHHHTTTCCEEEEE
T ss_pred             EeCCHHHHHHHHHhCCCEEEeccc---h-HHHHHHHHhCCCCCcEEE
Confidence            999999999999999999999987   6 88899999988 775554

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.2e-47  Score=347.66  Aligned_cols=259  Identities=28%  Similarity=0.498  Sum_probs=218.6

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      +++|||+++++++++++++++|.|+|+++||||||+++|||++|++++.|..+ ..+|.++|||++|+|+++|+++++|+
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence            46799999999987799999999999999999999999999999999998765 35799999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCcee-ecccccceeeeeEEeecccEEEcCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI-HHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      +||||++.+ .+|+.|.+|+.|++++|++.......|+..+|..++....|... .++...|+|+||++++.++++++|+
T Consensus        83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~  161 (371)
T 1f8f_A           83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  161 (371)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             CCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCC
Confidence            999999999 99999999999999999875421011222222111100000000 1122346999999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      ++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++|
T Consensus       162 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~  241 (371)
T 1f8f_A          162 DVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVIN  241 (371)
T ss_dssp             TSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred             CCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEec
Confidence            99999999999999999998878889999999999999999999999999999977999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCCCceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++   +++.+.+++++++|+|.++
T Consensus       242 ~~~---~~~~~~~~~~~~gg~D~vi  263 (371)
T 1f8f_A          242 SKT---QDPVAAIKEITDGGVNFAL  263 (371)
T ss_dssp             TTT---SCHHHHHHHHTTSCEEEEE
T ss_pred             CCc---cCHHHHHHHhcCCCCcEEE
Confidence            987   7899999999877765554

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.3e-46  Score=340.74  Aligned_cols=235  Identities=29%  Similarity=0.400  Sum_probs=215.9

Q ss_pred             eeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        16 ~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      +|||+++++++++++++++|.|+|+++||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            5999999999888999999999999999999999999999999999998764 468999999999999999999999999


Q ss_pred             CCEE-EecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           95 GDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        95 Gd~V-~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      |||| +..+..+|+.|.+|+.|++++|++...   .|+..+|                   +|+||+++|.+.++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYSVNG-------------------GYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCCCCC-------------------cceeEEEechHHEEECCCC
Confidence            9999 556778999999999999999999765   5666666                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++|+
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~  217 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNA  217 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence            99999999999999999976 77899999999999999999999999999999 99999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCceEEEe
Q 023561          254 KNCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      ++   +++.+.+++ +.+++|.++.
T Consensus       218 ~~---~~~~~~~~~-~~g~~d~vid  238 (340)
T 3s2e_A          218 RD---TDPAAWLQK-EIGGAHGVLV  238 (340)
T ss_dssp             TT---SCHHHHHHH-HHSSEEEEEE
T ss_pred             CC---cCHHHHHHH-hCCCCCEEEE
Confidence            87   889999988 4457766653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=3.6e-46  Score=343.54  Aligned_cols=238  Identities=22%  Similarity=0.335  Sum_probs=217.2

Q ss_pred             CCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      +.++.+|||+++++++. ++++++|.|+|+++||||||.+++||++|++++.|.++ ..+|.++|||++|+|+++|++++
T Consensus        18 ~~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~v~   95 (370)
T 4ej6_A           18 LYFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSAVR   95 (370)
T ss_dssp             ---CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTTCC
T ss_pred             cccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCCCC
Confidence            44778899999999876 99999999999999999999999999999999998864 46799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      +|++||+|++.+..+|+.|.+|+.|++++|++...   +|...+|                   +|+||++++.+.++++
T Consensus        96 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~  153 (370)
T 4ej6_A           96 DIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIHRDG-------------------GFAEYVLVPRKQAFEI  153 (370)
T ss_dssp             SSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCCCCC-------------------cceEEEEEchhhEEEC
Confidence            99999999999999999999999999999998764   5666666                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      |+++++++|| +..++.|+|+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++++
T Consensus       154 P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  231 (370)
T 4ej6_A          154 PLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATAT  231 (370)
T ss_dssp             CTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEE
T ss_pred             CCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEE
Confidence            9999999998 556999999976 88899999999999999999999999999999889999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHH---hcCCCceEEE
Q 023561          251 VNSKNCGDKSVSQVLLS---IYDLPLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~---~~~gg~~~v~  277 (280)
                      +|+++   +++.+.+++   ++++|+|.++
T Consensus       232 i~~~~---~~~~~~i~~~~~~~~gg~Dvvi  258 (370)
T 4ej6_A          232 VDPSA---GDVVEAIAGPVGLVPGGVDVVI  258 (370)
T ss_dssp             ECTTS---SCHHHHHHSTTSSSTTCEEEEE
T ss_pred             ECCCC---cCHHHHHHhhhhccCCCCCEEE
Confidence            99987   889999998   7777775554

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=4e-46  Score=340.28  Aligned_cols=237  Identities=26%  Similarity=0.398  Sum_probs=202.1

Q ss_pred             CcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhc-CCC--CCCCCcccccceeEEEEEeCCCC
Q 023561           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KDF--PAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g-~~~--~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      ||++|||+++.+++..++++++|.|+|+++||||||.++|||++|++++.| .++  ...+|.++|||++|+|+++|+++
T Consensus         1 ~m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   80 (348)
T 2d8a_A            1 MSEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGV   80 (348)
T ss_dssp             --CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTC
T ss_pred             CCCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCC
Confidence            466899999999885599999999999999999999999999999999998 432  23579999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      ++|++||||++.+..+|+.|.+|+.|++++|++...   +|...+|                   +|+||+++|.+++++
T Consensus        81 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~  138 (348)
T 2d8a_A           81 EGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------VFAEYAVVPAQNIWK  138 (348)
T ss_dssp             CSCCTTCEEEECCEECCSCCC------------CEE---TTTSSCC-------------------SSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCCCCC-------------------cCcceEEeChHHeEE
Confidence            999999999999999999999999999999998754   4555556                   999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|+++++++||++. ++.|||+++ +..++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++
T Consensus       139 iP~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~  215 (348)
T 2d8a_A          139 NPKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADY  215 (348)
T ss_dssp             CCTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSE
T ss_pred             CCCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            99999999999886 889999976 77888 9999999999999999999999999977999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++|+++   +++.+.+++++++ ++|.++
T Consensus       216 ~~~~~~---~~~~~~v~~~~~g~g~D~vi  241 (348)
T 2d8a_A          216 VINPFE---EDVVKEVMDITDGNGVDVFL  241 (348)
T ss_dssp             EECTTT---SCHHHHHHHHTTTSCEEEEE
T ss_pred             EECCCC---cCHHHHHHHHcCCCCCCEEE
Confidence            999887   7899999999988 775554

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=3.7e-45  Score=333.13  Aligned_cols=232  Identities=28%  Similarity=0.439  Sum_probs=212.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCC-CCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~-~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.++|. ++++|+|+|+ +++|||||||+++|||++|++.+.+..+. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~-~~P~i~G~E~~G~V~~vG~~V~~~~~G   78 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH-YYPITLGHEFSGYIDAVGSGVDDLHPG   78 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS-SSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC-CCCccccEEEEEEEEEECCCcccccCC
Confidence            89999999987 9999999998 57999999999999999999999887653 689999999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|.+.+...|+.|.+|+.|++++|++...   +|...+|                   +|+||+++|.++++++|++++
T Consensus        79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~l~  136 (346)
T 4a2c_A           79 DAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSRRDG-------------------GFAEYIVVKRKNVFALPTDMP  136 (346)
T ss_dssp             CEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEEEGGGEEECCTTSC
T ss_pred             CeEEeeeccCCCCcccccCCccccCCCccc---ccCCCCc-------------------ccccccccchheEEECCCCCC
Confidence            999999999999999999999999998775   6766777                   999999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +++||++. ++.+++. +.+..++++|++|+|+|+|++|++++|+|+++|++.+++++++++|+++++++|+++++|+++
T Consensus       137 ~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~  214 (346)
T 4a2c_A          137 IEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE  214 (346)
T ss_dssp             GGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC
Confidence            99999876 5555555 678899999999999999999999999999999988899999999999999999999999988


Q ss_pred             CCCccHHHHHHHhcCC-CceEEE
Q 023561          256 CGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       256 ~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                         .++.+.+++++++ |.+.+.
T Consensus       215 ---~~~~~~~~~~~~~~g~d~v~  234 (346)
T 4a2c_A          215 ---MSAPQMQSVLRELRFNQLIL  234 (346)
T ss_dssp             ---SCHHHHHHHHGGGCSSEEEE
T ss_pred             ---CCHHHHHHhhcccCCccccc
Confidence               8888999999988 665544

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=3.9e-45  Score=334.22  Aligned_cols=236  Identities=23%  Similarity=0.308  Sum_probs=213.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhh-hhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVT-FWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~-~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||++++++++ ++++++|.|+|+++||||||++++||++|++ ++.|..+. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~-~~p~v~G~E~~G~V~~vG~~v~~~~vG   78 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE-RHNMILGHEAVGEVVEVGSEVKDFKPG   78 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC-CSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC-CCCcccCCcceEEEEEECCCCCcCCCC
Confidence            79999999998 9999999999999999999999999999999 55776653 679999999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc--cEEEcCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~iP~~  173 (280)
                      |||++.+..+|+.|.+|+.|+.++|.........|...+|                   +|+||++++..  .++++|++
T Consensus        79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G-------------------~~aey~~v~~~~~~~~~iP~~  139 (352)
T 3fpc_A           79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDG-------------------VFGEFFHVNDADMNLAHLPKE  139 (352)
T ss_dssp             CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCC-------------------SSBSCEEESSHHHHCEECCTT
T ss_pred             CEEEEccccCCCCchhhcCCCcCCccccccccccccCCCC-------------------cccceEEeccccCeEEECCCC
Confidence            9999999999999999999999988765421122333444                   99999999976  99999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++|+
T Consensus       140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~  218 (352)
T 3fpc_A          140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINY  218 (352)
T ss_dssp             SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECG
T ss_pred             CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcC
Confidence            99999999999999999975 88999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++   +++.+.+++++++ |+|.++
T Consensus       219 ~~---~~~~~~v~~~t~g~g~D~v~  240 (352)
T 3fpc_A          219 KN---GDIVEQILKATDGKGVDKVV  240 (352)
T ss_dssp             GG---SCHHHHHHHHTTTCCEEEEE
T ss_pred             CC---cCHHHHHHHHcCCCCCCEEE
Confidence            87   8899999999999 776655

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.3e-44  Score=329.78  Aligned_cols=237  Identities=25%  Similarity=0.382  Sum_probs=210.8

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC--CCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      |||+++++++++++++++|.|+|+++||||||++++||++|++++.|..+.  ..+|.++|||++|+|+++|+++++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            799999999988999999999999999999999999999999999987642  467999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCC--cCCCCCCCCCccccccCCceeecccccceeeeeEEee-cccEEEcC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFK--ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVD  171 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~--~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~iP  171 (280)
                      ||+|++.+..+|+.|.+|+.|++++|......  ...|...+|                   +|+||+++| .+.++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPG-------------------SMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCC-------------------SSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCc-------------------eeeEEEEecchhceEeCC
Confidence            99999999999999999999999999432210  012333344                   999999999 99999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHH-HcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      + +++++||.+++++.|||+++.+ ...+++|++|+|+|+|++|++++|+|+.+|..+|++++++++|+++++++|++++
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~  220 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA  220 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence            9 9999999999999999998765 3489999999999999999999999999955599999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++    +++.+.+++++++ |+|.++
T Consensus       221 i~~~----~~~~~~v~~~t~g~g~d~v~  244 (345)
T 3jv7_A          221 VKSG----AGAADAIRELTGGQGATAVF  244 (345)
T ss_dssp             EECS----TTHHHHHHHHHGGGCEEEEE
T ss_pred             EcCC----CcHHHHHHHHhCCCCCeEEE
Confidence            9985    3788999999988 776554

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=9e-45  Score=332.40  Aligned_cols=239  Identities=23%  Similarity=0.344  Sum_probs=209.6

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC-C--CCCCCcccccceeEEEEEeCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-F--PAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~-~--~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      +++|||+++++++. ++++++|.|+|+++||||||.++|||++|++++.+.. .  ...+|.++|||++|+|+++|++++
T Consensus         5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~   83 (356)
T 1pl8_A            5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (356)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence            35699999998875 9999999999999999999999999999999988532 1  135699999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCC-CCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      +|++||||++.+..+|+.|.+|+.|++++|++..+   +|.. .+|                   +|+||+++|.+++++
T Consensus        84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G-------------------~~aey~~v~~~~~~~  141 (356)
T 1pl8_A           84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG-------------------NLCRFYKHNAAFCYK  141 (356)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC-------------------SCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCCC-------------------ccccEEEeehHHEEE
Confidence            99999999999999999999999999999998654   3432 245                   999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|+++++++||++ .++.|+|+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++
T Consensus       142 iP~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  219 (356)
T 1pl8_A          142 LPDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL  219 (356)
T ss_dssp             CCTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            9999999999876 5889999976 7889999999999999999999999999999988999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++|++..+++++.+.+++.+++|+|.++
T Consensus       220 vi~~~~~~~~~~~~~i~~~~~~g~D~vi  247 (356)
T 1pl8_A          220 VLQISKESPQEIARKVEGQLGCKPEVTI  247 (356)
T ss_dssp             EEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             EEcCcccccchHHHHHHHHhCCCCCEEE
Confidence            9998720015678888888865665554

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.1e-44  Score=331.66  Aligned_cols=235  Identities=25%  Similarity=0.308  Sum_probs=211.4

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC----
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD----   90 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~----   90 (280)
                      -+|||++++++++.++++++|.|+|+++||||||.++|||++|++++.|.++...+|.++|||++|+|+++| +++    
T Consensus        16 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~~   94 (380)
T 1vj0_A           16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRDLN   94 (380)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBCTT
T ss_pred             hheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccccc
Confidence            489999999998559999999999999999999999999999999999876544679999999999999999 999    


Q ss_pred             --CCCCCCEEEecCCCCCCCChhhc-CCCCCCCCCCCCCcCCCC--------CCCCCccccccCCceeecccccceeeee
Q 023561           91 --GVVEGDVVIPHFLADCTECVGCR-SKKGNLCSAFPFKISPWM--------PRDQTSRFKDLRGETIHHFVSVSSFSEY  159 (280)
Q Consensus        91 --~~~~Gd~V~~~~~~~c~~c~~c~-~g~~~~c~~~~~~~~~g~--------~~~G~~~~~~~~~~~~~~~~~~g~~~~~  159 (280)
                        +|++||||++.+..+|+.|.+|+ .|++++|++...   +|.        ..+|                   +|+||
T Consensus        95 ~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~~~~~~~~G-------------------~~aey  152 (380)
T 1vj0_A           95 GELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGCSEYPHLRG-------------------CYSSH  152 (380)
T ss_dssp             SCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCSSSTTCCCS-------------------SSBSE
T ss_pred             CCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---eccccccCCCCCCCc-------------------cccce
Confidence              99999999999999999999999 999999998643   333        2234                   99999


Q ss_pred             EEe-ecccEEEcCCCCChh-hhcccchhhHHHHHHHHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          160 TVL-DIAHVVKVDPTVPPN-RACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       160 ~~~-~~~~~~~iP~~ls~~-~aa~l~~~~~ta~~~l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +++ |+++++++|++++++ +|+++. ++.|||+++ +..+ +++|++|||+|+|++|++++|+|+.+|+.+|+++++++
T Consensus       153 ~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  230 (380)
T 1vj0_A          153 IVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP  230 (380)
T ss_dssp             EEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             EEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCH
Confidence            999 999999999999999 676666 999999976 6778 99999999999999999999999999954899999999


Q ss_pred             hHHHHHHHcCCcEEEcCC---CCCCccHHHHHHHhcCC-CceEEE
Q 023561          237 EKFEIGKRFGVTEFVNSK---NCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       237 ~~~~~~~~~Ga~~vi~~~---~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +|+++++++|++++++++   +   +++.+.+++++++ |+|.++
T Consensus       231 ~~~~~~~~lGa~~vi~~~~~~~---~~~~~~v~~~~~g~g~Dvvi  272 (380)
T 1vj0_A          231 NRLKLAEEIGADLTLNRRETSV---EERRKAIMDITHGRGADFIL  272 (380)
T ss_dssp             HHHHHHHHTTCSEEEETTTSCH---HHHHHHHHHHTTTSCEEEEE
T ss_pred             HHHHHHHHcCCcEEEeccccCc---chHHHHHHHHhCCCCCcEEE
Confidence            999999999999999987   5   7788899999988 775554

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=4.9e-44  Score=325.46  Aligned_cols=233  Identities=27%  Similarity=0.364  Sum_probs=210.1

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++++++++++++++|.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            789999999866999999999999999999999999999999999987653 3579999999999999999999999999


Q ss_pred             CEEEecCCC-CCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           96 DVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        96 d~V~~~~~~-~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      |||++.+.. .|+.|.+|+.|++++|++...   .|...+|                   +|+||+++|.++++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecCCCC-------------------cceeeEEechHHEEECCCCC
Confidence            999886654 599999999999999998754   4555556                   99999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++|+.
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~  216 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL  216 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred             CHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCC
Confidence            999999999999999997654 489999999999998899999999999999 999999999999999999999999988


Q ss_pred             CCCCccHHHHHHHhcCCCceEEE
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +   +++.+.+++.+ +++|.++
T Consensus       217 ~---~~~~~~~~~~~-~~~d~vi  235 (339)
T 1rjw_A          217 K---EDAAKFMKEKV-GGVHAAV  235 (339)
T ss_dssp             T---SCHHHHHHHHH-SSEEEEE
T ss_pred             C---ccHHHHHHHHh-CCCCEEE
Confidence            6   78888888888 5665544

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.9e-44  Score=327.33  Aligned_cols=235  Identities=26%  Similarity=0.391  Sum_probs=214.3

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++.+++.+  +++++++.|+|+++||||||+++|||++|++++.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            789999999875  899999999999999999999999999999999987653 35799999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||||++.+..+|+.|.+|+.|++++|++...   .|...+|                   +|+||+++|.++++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEHRHG-------------------TYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTSSCC-------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcCCCc-------------------cceeEEEeChHHeEECCCC
Confidence            99999999999999999999999999998764   4554456                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++++||++++++.|||+++.+..++++|++|||+|+ |++|++++++++.+|+ +|+++++++++++.++++|+++++|
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d  217 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVN  217 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEc
Confidence            9999999999999999998766678999999999998 9999999999999999 8999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++   +++.+.+++.+++ ++|.++
T Consensus       218 ~~~---~~~~~~~~~~~~~~~~d~vi  240 (343)
T 2eih_A          218 YTH---PDWPKEVRRLTGGKGADKVV  240 (343)
T ss_dssp             TTS---TTHHHHHHHHTTTTCEEEEE
T ss_pred             CCc---ccHHHHHHHHhCCCCceEEE
Confidence            877   7788889998877 775554

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=9.8e-45  Score=330.47  Aligned_cols=233  Identities=27%  Similarity=0.403  Sum_probs=210.3

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC---CCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++++++++++++++|.|+|+++||||||+++|||++|++++.|..+   ...+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            78999999987799999999999999999999999999999999988654   245799999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||||++.+..+|+.|.+|+.|++++|++...   +|...+|                   +|+||++++.++++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVDRDG-------------------GFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCCCCC-------------------cceeEEEEchHHeEECCCC
Confidence            99999999999999999999999999998764   4544555                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +++++||++ .++.|+|+++.+..++ +|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++ +++++|+
T Consensus       139 ~~~~~aa~~-~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~  215 (343)
T 2dq4_A          139 LPFEVAAIL-EPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNP  215 (343)
T ss_dssp             SCHHHHTTH-HHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECT
T ss_pred             CCHHHHHhh-hHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCc
Confidence            999999987 4788999977547888 999999999999999999999999997799999999999999999 9999999


Q ss_pred             CCCCCccHHHHHHHhcCCCceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++   +++.+.++++++.|+|.++
T Consensus       216 ~~---~~~~~~~~~~~~~g~D~vi  236 (343)
T 2dq4_A          216 LE---EDLLEVVRRVTGSGVEVLL  236 (343)
T ss_dssp             TT---SCHHHHHHHHHSSCEEEEE
T ss_pred             Cc---cCHHHHHHHhcCCCCCEEE
Confidence            87   7899999998833775554

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=2.3e-44  Score=330.16  Aligned_cols=237  Identities=20%  Similarity=0.279  Sum_probs=205.1

Q ss_pred             CcceeeeeeecCCCCCcEEEE--eecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           13 KPIQCRAAIATAPGEPLVIDE--VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~~--~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      ++.+|||+++.+++.++++++  +|.|+|+++||||||+++|||++|++++.|.++...+|.++|||++|+|+++|++++
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence            446799999999886799999  999999999999999999999999999998765556799999999999999999999


Q ss_pred             -CCCCCCEEEecC-CCCCCCChhhcCCCCCCCCCC-CCCc---CCCCCCCCCccccccCCceeecccccceeeeeEEeec
Q 023561           91 -GVVEGDVVIPHF-LADCTECVGCRSKKGNLCSAF-PFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (280)
Q Consensus        91 -~~~~Gd~V~~~~-~~~c~~c~~c~~g~~~~c~~~-~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  164 (280)
                       +|++||||++.+ ..+|+.|.+|+.|++++|++. ....   ..|...+|                   +|+||+++|.
T Consensus        83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~  143 (360)
T 1piw_A           83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQG-------------------GYANYVRVHE  143 (360)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCC-------------------SSBSEEEEEG
T ss_pred             CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCC-------------------cceeEEEEch
Confidence             999999995544 478999999999999999975 1100   00333344                   9999999999


Q ss_pred             ccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       165 ~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++++++|+++++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++++
T Consensus       144 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          144 HFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             GGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             hheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            9999999999999999999999999997654 899999999999999999999999999999 79999999999999999


Q ss_pred             cCCcEEEcCCCCCCc-cHHHHHHHhcCCCceEEE
Q 023561          245 FGVTEFVNSKNCGDK-SVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       245 ~Ga~~vi~~~~~~~~-~~~~~v~~~~~gg~~~v~  277 (280)
                      +|+++++|+++   + ++.+.++    +++|.++
T Consensus       222 lGa~~v~~~~~---~~~~~~~~~----~~~D~vi  248 (360)
T 1piw_A          222 MGADHYIATLE---EGDWGEKYF----DTFDLIV  248 (360)
T ss_dssp             HTCSEEEEGGG---TSCHHHHSC----SCEEEEE
T ss_pred             cCCCEEEcCcC---chHHHHHhh----cCCCEEE
Confidence            99999999876   4 5655443    4554443

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=2.8e-44  Score=328.07  Aligned_cols=223  Identities=22%  Similarity=0.331  Sum_probs=196.5

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      +++|||+++.+++++++++++|.|+|+++||||||+++|||++|++++.|..+...+|.++|||++|+|+++|+++++|+
T Consensus         2 ~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~   81 (348)
T 3two_A            2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFK   81 (348)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             ceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCC
Confidence            46899999999988899999999999999999999999999999999999877667899999999999999999999999


Q ss_pred             CCCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           94 EGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        94 ~Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      +||+|++.+. .+|+.|.+|+.|++++|+ ...   .|+..+..     ..    ......|+|+||+++|.++++++|+
T Consensus        82 vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~~~~~-----~~----~~~~~~G~~aey~~v~~~~~~~iP~  148 (348)
T 3two_A           82 IGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYDCLDS-----FH----DNEPHMGGYSNNIVVDENYVISVDK  148 (348)
T ss_dssp             TTCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSSSEEG-----GG----TTEECCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---cccccccc-----cc----cCCcCCccccceEEechhhEEECCC
Confidence            9999987654 789999999999999999 322   22222200     00    0001124999999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      ++++++||.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++
T Consensus       149 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~  225 (348)
T 3two_A          149 NAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY  225 (348)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE
T ss_pred             CCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec
Confidence            999999999999999999976 55699999999999999999999999999999 899999999999999999999988

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.4e-44  Score=331.76  Aligned_cols=239  Identities=23%  Similarity=0.320  Sum_probs=209.8

Q ss_pred             CcceeeeeeecCCCCCcEEEEeecC--------CCCCCeEEEEeeeeecChhhhhhhhcCC---CCCCCCcccccceeEE
Q 023561           13 KPIQCRAAIATAPGEPLVIDEVIVD--------PPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGV   81 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~~~~~p--------~~~~~eVlIkv~~~~i~~~D~~~~~g~~---~~~~~p~i~G~e~~G~   81 (280)
                      ++++|||+++.+++. ++++++|.|        +|+++||||||+++|||++|++++.+..   ....+|.++|||++|+
T Consensus         5 ~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~   83 (363)
T 3m6i_A            5 ASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGE   83 (363)
T ss_dssp             CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred             CcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEE
Confidence            567899999998877 999999999        9999999999999999999999987432   1236799999999999


Q ss_pred             EEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCC-CCCCccccccCCceeecccccceeeeeE
Q 023561           82 VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYT  160 (280)
Q Consensus        82 V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~~~~  160 (280)
                      |+++|+++++|++||||++.+..+|+.|.+|+.|.++.|++..+   .|.. .+|                   +|+||+
T Consensus        84 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~G-------------------~~aey~  141 (363)
T 3m6i_A           84 VIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVPG-------------------LLRRYV  141 (363)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSCC-------------------SCBSEE
T ss_pred             EEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCCc-------------------cceeEE
Confidence            99999999999999999999999999999999999999999765   3332 445                   999999


Q ss_pred             EeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          161 VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       161 ~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ++|.++++++|+ +++++||++. ++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|++
T Consensus       142 ~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  218 (363)
T 3m6i_A          142 NHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLK  218 (363)
T ss_dssp             EEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHH
T ss_pred             EEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            999999999999 9999999884 889999976 8889999999999999999999999999999966999999999999


Q ss_pred             HHHHcCCcEEEcCCC--CCCccHHHHHHHhcCC-CceEEEe
Q 023561          241 IGKRFGVTEFVNSKN--CGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       241 ~~~~~Ga~~vi~~~~--~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +++++ +++++++..  .+++++.+.+++++++ |+|.++.
T Consensus       219 ~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          219 FAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             HHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             HHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            99999 766555431  1236788999999988 7766553

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-43  Score=324.30  Aligned_cols=239  Identities=24%  Similarity=0.362  Sum_probs=213.1

Q ss_pred             CcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 023561           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      +|.+|||+++++++.+++++++|.|+|+++||||||+++|||++|++++.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            4578999999999866999999999999999999999999999999999987653 357999999999999999999999


Q ss_pred             CCCCCEEEecCCC-CCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           92 VVEGDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        92 ~~~Gd~V~~~~~~-~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      |++||||++.+.. +|+.|.+|+.|++++|++...   .|...+|                   +|+||+++|.++++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYTHDG-------------------SFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccCCCC-------------------cceeEEEeccccEEEC
Confidence            9999999886654 599999999999999998754   4555556                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      |+++++++||++++++.|||+++ ...++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.++++|++.
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~  217 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEV  217 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHH-HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCE
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHH-HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCce
Confidence            99999999999999999999976 4558999999999998 9999999999999999 8999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++|+.+  ++++.+.+++.+++++|.++
T Consensus       218 ~~d~~~--~~~~~~~~~~~~~~~~D~vi  243 (347)
T 2hcy_A          218 FIDFTK--EKDIVGAVLKATDGGAHGVI  243 (347)
T ss_dssp             EEETTT--CSCHHHHHHHHHTSCEEEEE
T ss_pred             EEecCc--cHhHHHHHHHHhCCCCCEEE
Confidence            998763  26788888888876665554

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.5e-44  Score=327.88  Aligned_cols=237  Identities=26%  Similarity=0.375  Sum_probs=207.2

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcC-CC--CCCCCcccccceeEEEEEeCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DF--PAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~-~~--~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      +++|||+++++++. ++++++|.|+|+++||||||++++||++|++++.+. ..  ...+|.++|||++|+|+++|++++
T Consensus         2 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   80 (352)
T 1e3j_A            2 ASDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   80 (352)
T ss_dssp             --CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             cccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence            35699999998875 999999999999999999999999999999988743 22  135799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCC-CCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      +|++||||++.+..+|+.|.+|+.|++++|++..+   .|.. .+|                   +|+||+++|.+++++
T Consensus        81 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G-------------------~~aey~~v~~~~~~~  138 (352)
T 1e3j_A           81 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDDG-------------------NLARYYVHAADFCHK  138 (352)
T ss_dssp             SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBCC-------------------SCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCCc-------------------cceeEEEeChHHeEE
Confidence            99999999999999999999999999999998654   3432 244                   999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|+++++++||++ .++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++
T Consensus       139 iP~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  215 (352)
T 1e3j_A          139 LPDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADV  215 (352)
T ss_dssp             CCTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE
T ss_pred             CcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCE
Confidence            9999999999876 4889999976 78899999999999999999999999999999 6999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcC---C-CceEEEe
Q 023561          250 FVNSKNCGDKSVSQVLLSIYD---L-PLLTISV  278 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~---g-g~~~v~~  278 (280)
                      ++|+++  .+++.+.+++.++   + ++|.++.
T Consensus       216 ~~~~~~--~~~~~~~i~~~~~~~~g~g~D~vid  246 (352)
T 1e3j_A          216 TLVVDP--AKEEESSIIERIRSAIGDLPNVTID  246 (352)
T ss_dssp             EEECCT--TTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             EEcCcc--cccHHHHHHHHhccccCCCCCEEEE
Confidence            999862  1466778888876   5 7765543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=5.4e-44  Score=325.72  Aligned_cols=233  Identities=24%  Similarity=0.381  Sum_probs=202.1

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC--CCCCCcccccceeEEEEEeCCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~--~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      |.+|||+++++++++++++++|.|+|+++||||||+++|||++|++++.|.++  ...+|.++|||++|+|+++|++ ++
T Consensus         1 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~   79 (344)
T 2h6e_A            1 MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AK   79 (344)
T ss_dssp             CEEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred             CceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CC
Confidence            46799999999987799999999999999999999999999999999998765  3467999999999999999999 99


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEee-cccEEEc
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKV  170 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i  170 (280)
                      |++||||+..+..+|+.|.+|+.|++++|++...   +|...+|                   +|+||+++| +++++++
T Consensus        80 ~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~i  137 (344)
T 2h6e_A           80 VKKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQTTNG-------------------GFSEYMLVKSSRWLVKL  137 (344)
T ss_dssp             CCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEESCGGGEEEE
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccccCC-------------------cceeeEEecCcccEEEe
Confidence            9999999988889999999999999999998653   4555556                   999999999 9999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHH----cCCCCCCEEEEECccHHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHH
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRT----ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~----~~~~~g~~VlI~G~g~~G~~a~~la~~~--g~~~vi~~~~~~~~~~~~~~  244 (280)
                       +++++++||.+++++.|||+++.+.    .++ +|++|||+|+|++|++++|+|+.+  |+ +|++++++++|++++++
T Consensus       138 -~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          138 -NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE  214 (344)
T ss_dssp             -SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH
T ss_pred             -CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH
Confidence             9999999999999999999987654    288 999999999999999999999999  99 79999999999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          245 FGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       245 ~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +|+++++|+++   .  .+.+.+++++ ++|.++
T Consensus       215 lGa~~vi~~~~---~--~~~~~~~~~g~g~D~vi  243 (344)
T 2h6e_A          215 LGADYVSEMKD---A--ESLINKLTDGLGASIAI  243 (344)
T ss_dssp             HTCSEEECHHH---H--HHHHHHHHTTCCEEEEE
T ss_pred             hCCCEEecccc---c--hHHHHHhhcCCCccEEE
Confidence            99999998653   1  2345666767 775554

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=9.4e-44  Score=324.07  Aligned_cols=235  Identities=23%  Similarity=0.317  Sum_probs=212.1

Q ss_pred             eeeeeecCC-CCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAP-GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~-g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++... ...++++|+|+|+|+++||||||.++|||++|++++.|.++. .+|.++|||++|+|+++|+++++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~G   79 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQVG   79 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeecccC
Confidence            799998643 344999999999999999999999999999999999998764 679999999999999999999999999


Q ss_pred             CEEEecCCC-CCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           96 DVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        96 d~V~~~~~~-~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      |||++.+.. .|+.|.+|..+..+.|.....   .+...+|                   +|+||+.++.++++++|+++
T Consensus        80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~G-------------------~~ae~~~~~~~~~~~iP~~~  137 (348)
T 4eez_A           80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYSVDG-------------------GMAEEAIVVADYAVKVPDGL  137 (348)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGSCBCCTTS
T ss_pred             CeEeecccccccCccccccCCcccccccccc---cccccCC-------------------cceeeccccccceeecCCCC
Confidence            999877765 468899999999999998765   5556666                   99999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++++||++++++.|+|.++ +..++++|++|||+|+|++|.+++++++.++..+||+++++++|+++++++|+++++|++
T Consensus       138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~  216 (348)
T 4eez_A          138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSG  216 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-
T ss_pred             CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCC
Confidence            9999999999999999964 678899999999999999999999999987655999999999999999999999999999


Q ss_pred             CCCCccHHHHHHHhcCC-CceEEEe
Q 023561          255 NCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +   +++.+.+++++++ |++.+..
T Consensus       217 ~---~~~~~~v~~~t~g~g~d~~~~  238 (348)
T 4eez_A          217 D---VNPVDEIKKITGGLGVQSAIV  238 (348)
T ss_dssp             C---CCHHHHHHHHTTSSCEEEEEE
T ss_pred             C---CCHHHHhhhhcCCCCceEEEE
Confidence            8   8999999999999 8877664

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=9.5e-43  Score=319.83  Aligned_cols=236  Identities=21%  Similarity=0.187  Sum_probs=207.3

Q ss_pred             CcceeeeeeecCCC-CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCC
Q 023561           13 KPIQCRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        13 ~~~~~~a~~~~~~g-~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      ++.+|||+++++++ +.++++++|.|+|+++||||||+++|||++|++++.|.++. ..+|.++|||++|+|+++|++++
T Consensus        24 m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~  103 (363)
T 3uog_A           24 MSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVT  103 (363)
T ss_dssp             CCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCC
Confidence            34579999999775 35999999999999999999999999999999999987753 56899999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcC-CCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS-PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~-~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      +|++||||++.+..      .|+.|. +.|+....... +|...+|                   +|+||+++|.+++++
T Consensus       104 ~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~  157 (363)
T 3uog_A          104 RFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG-------------------VLSEYVVLPEGWFVA  157 (363)
T ss_dssp             SCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC-------------------CCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC-------------------cceeEEEechHHeEE
Confidence            99999999877543      567777 88874322111 4444555                   999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++
T Consensus       158 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  236 (363)
T 3uog_A          158 APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADH  236 (363)
T ss_dssp             CCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCE
Confidence            999999999999999999999987788999999999999999999999999999999 8999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      ++|.+.   +++.+.+++++++ |+|.++.
T Consensus       237 vi~~~~---~~~~~~v~~~~~g~g~D~vid  263 (363)
T 3uog_A          237 GINRLE---EDWVERVYALTGDRGADHILE  263 (363)
T ss_dssp             EEETTT---SCHHHHHHHHHTTCCEEEEEE
T ss_pred             EEcCCc---ccHHHHHHHHhCCCCceEEEE
Confidence            999554   7899999999998 7765543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=9.9e-44  Score=330.81  Aligned_cols=239  Identities=21%  Similarity=0.260  Sum_probs=213.2

Q ss_pred             CcceeeeeeecCCCCCcEEEEeecCC-CCCCeEEEEeeeeecChhhhhhhhcCCC-------CCCCCcccccceeEEEEE
Q 023561           13 KPIQCRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDF-------PAVFPRILGHEAIGVVES   84 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~~~~~p~-~~~~eVlIkv~~~~i~~~D~~~~~g~~~-------~~~~p~i~G~e~~G~V~~   84 (280)
                      .+.+|+++++..++. ++++++|.|+ |+++||||||.++|||++|++++.|...       ...+|.++|||++|+|++
T Consensus        27 ~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~  105 (404)
T 3ip1_A           27 GKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVE  105 (404)
T ss_dssp             TTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEE
T ss_pred             hhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEE
Confidence            445677777776664 9999999999 9999999999999999999999886421       136799999999999999


Q ss_pred             eCCCC------CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeee
Q 023561           85 VGENV------DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (280)
Q Consensus        85 vG~~v------~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~  158 (280)
                      +|+++      ++|++||||++.+..+|+.|.+|+.|++++|++...   +|...+|                   +|+|
T Consensus       106 vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~ae  163 (404)
T 3ip1_A          106 AGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFNVDG-------------------AFAE  163 (404)
T ss_dssp             ECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBS
T ss_pred             ECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCCCCC-------------------CCcc
Confidence            99999      889999999999999999999999999999999764   5666666                   9999


Q ss_pred             eEEeecccEEEcCCCCC------hhhhcccchhhHHHHHHHHHH-cCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEE
Q 023561          159 YTVLDIAHVVKVDPTVP------PNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  231 (280)
Q Consensus       159 ~~~~~~~~~~~iP~~ls------~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~  231 (280)
                      |++++.+.++++|++++      +.++|++..++.|||+++... .++++|++|||+|+|++|++++|+|+.+|+++|++
T Consensus       164 y~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  243 (404)
T 3ip1_A          164 YVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVIL  243 (404)
T ss_dssp             EEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             eEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            99999999999999886      455888888999999987655 48999999999999999999999999999989999


Q ss_pred             EcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          232 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       232 ~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++++|+++++++|+++++|+++   +++.+.+++++++ |+|.++
T Consensus       244 ~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~t~g~g~D~vi  287 (404)
T 3ip1_A          244 SEPSEVRRNLAKELGADHVIDPTK---ENFVEAVLDYTNGLGAKLFL  287 (404)
T ss_dssp             ECSCHHHHHHHHHHTCSEEECTTT---SCHHHHHHHHTTTCCCSEEE
T ss_pred             ECCCHHHHHHHHHcCCCEEEcCCC---CCHHHHHHHHhCCCCCCEEE
Confidence            999999999999999999999987   8899999999999 776655

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=6.5e-43  Score=318.90  Aligned_cols=233  Identities=27%  Similarity=0.414  Sum_probs=210.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC--------CCCCCcccccceeEEEEEeCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------PAVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~--------~~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      |||+++++++++++++++|.|+|+++||||||.++|||++|++++.|.++        ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            78999999987799999999999999999999999999999999988654        2367999999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec-ccE
Q 023561           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHV  167 (280)
Q Consensus        89 v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~  167 (280)
                      +++|++||||+..+..+|+.|.+|+.|++++|++...   +|...+|                   +|+||+++|. +++
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---ccccCCC-------------------cceeEEEecCccce
Confidence            9999999999888888999999999999999998654   4555555                   9999999999 999


Q ss_pred             EEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHHc
Q 023561          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       168 ~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      +++ +++++++||.+++++.|||+++ +..++++|++|||+|+ |++|++++|+++.+ |+ +|++++++++++++++++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~  215 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA  215 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh
Confidence            999 9999999999999999999976 5689999999999998 59999999999999 99 899999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHHhcC-CCceEEE
Q 023561          246 GVTEFVNSKNCGDKSVSQVLLSIYD-LPLLTIS  277 (280)
Q Consensus       246 Ga~~vi~~~~~~~~~~~~~v~~~~~-gg~~~v~  277 (280)
                      |+++++|+.+   .++.+.+.+++. +++|.++
T Consensus       216 g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi  245 (347)
T 1jvb_A          216 GADYVINASM---QDPLAEIRRITESKGVDAVI  245 (347)
T ss_dssp             TCSEEEETTT---SCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEecCCC---ccHHHHHHHHhcCCCceEEE
Confidence            9999999887   788888888887 5765554

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.4e-43  Score=322.29  Aligned_cols=224  Identities=23%  Similarity=0.346  Sum_probs=195.7

Q ss_pred             CCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      ....++|||+++.+++++++++++|.|+|+++||||||+++|||++|++++.|..+...+|.++|||++|+|+++|++++
T Consensus        17 ~~~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~   96 (369)
T 1uuf_A           17 KKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVE   96 (369)
T ss_dssp             ------CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             HhcCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCC
Confidence            34567899999988877899999999999999999999999999999999998765556799999999999999999999


Q ss_pred             CCCCCCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCc--C---CCCCCCCCccccccCCceeecccccceeeeeEEeec
Q 023561           91 GVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKI--S---PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (280)
Q Consensus        91 ~~~~Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~--~---~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  164 (280)
                      +|++||||++.+. ..|+.|.+|+.|++++|++.....  .   .|...+|                   +|+||+++|.
T Consensus        97 ~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G-------------------~~aeyv~v~~  157 (369)
T 1uuf_A           97 KYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLG-------------------GYSQQIVVHE  157 (369)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCC-------------------SSBSEEEEEG
T ss_pred             CCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCC-------------------cccceEEEcc
Confidence            9999999988776 469999999999999999752110  0   0222334                   9999999999


Q ss_pred             ccEEEcCCC-CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          165 AHVVKVDPT-VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       165 ~~~~~iP~~-ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++++++|++ +++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++
T Consensus       158 ~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~  235 (369)
T 1uuf_A          158 RYVLRIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAK  235 (369)
T ss_dssp             GGCEECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH
T ss_pred             hhEEECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            999999999 9999999999999999997654 689999999999999999999999999999 7999999999999999


Q ss_pred             HcCCcEEEcCCC
Q 023561          244 RFGVTEFVNSKN  255 (280)
Q Consensus       244 ~~Ga~~vi~~~~  255 (280)
                      ++|+++++|+++
T Consensus       236 ~lGa~~vi~~~~  247 (369)
T 1uuf_A          236 ALGADEVVNSRN  247 (369)
T ss_dssp             HHTCSEEEETTC
T ss_pred             HcCCcEEecccc
Confidence            999999999876

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=4.6e-43  Score=325.65  Aligned_cols=239  Identities=23%  Similarity=0.319  Sum_probs=207.8

Q ss_pred             eeeeeeecCCCCCcEEEEeecCCC-CC-----CeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           16 QCRAAIATAPGEPLVIDEVIVDPP-NS-----HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        16 ~~~a~~~~~~g~~l~~~~~~~p~~-~~-----~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      +|||+++++++. ++++++|.|+| ++     +||||||+++|||++|++++.|..+ ..+|.++|||++|+|+++|+++
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v   79 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence            589999998875 99999999998 68     9999999999999999999998653 3579999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCC-----cCCCCCCCCCccccccCCceeecccccceeeeeEEeec
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-----ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~-----~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  164 (280)
                      ++|++||||++.+..+|+.|.+|+.|++++|++....     ..+|....                ...|+|+||++++.
T Consensus        80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~----------------~~~G~~aey~~v~~  143 (398)
T 2dph_A           80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLK----------------GWSGGQAEYVLVPY  143 (398)
T ss_dssp             CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBS----------------SCCCSSBSEEEESS
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccC----------------CCCceeeeeEEecc
Confidence            9999999999999999999999999999999972110     01222100                01249999999998


Q ss_pred             c--cEEEcCCCCChhh----hcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          165 A--HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       165 ~--~~~~iP~~ls~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +  +++++|+++++++    ||++++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|
T Consensus       144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            7  8999999999998    888989999999987 78899999999999999999999999999999889999999999


Q ss_pred             HHHHHHcCCcEEEcCCCCCCccH-HHHHHHhcCC-CceEEE
Q 023561          239 FEIGKRFGVTEFVNSKNCGDKSV-SQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       239 ~~~~~~~Ga~~vi~~~~~~~~~~-~~~v~~~~~g-g~~~v~  277 (280)
                      +++++++|++ ++|+++   +++ .+.+++++++ |+|.++
T Consensus       223 ~~~a~~lGa~-~i~~~~---~~~~~~~~~~~~~g~g~Dvvi  259 (398)
T 2dph_A          223 LKLLSDAGFE-TIDLRN---SAPLRDQIDQILGKPEVDCGV  259 (398)
T ss_dssp             HHHHHTTTCE-EEETTS---SSCHHHHHHHHHSSSCEEEEE
T ss_pred             HHHHHHcCCc-EEcCCC---cchHHHHHHHHhCCCCCCEEE
Confidence            9999999996 888876   665 8899999988 775554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.8e-43  Score=325.38  Aligned_cols=241  Identities=23%  Similarity=0.312  Sum_probs=207.1

Q ss_pred             eeeeeeecCCCCCcEEEEeecCCCC-CCe------EEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCC
Q 023561           16 QCRAAIATAPGEPLVIDEVIVDPPN-SHE------VRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        16 ~~~a~~~~~~g~~l~~~~~~~p~~~-~~e------VlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      +|||+++.+++. ++++++|.|+|. ++|      |||||++++||++|++++.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~   79 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence            589999998875 999999999997 898      99999999999999999998654 356899999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCc---CCCCCCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        89 v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                      +++|++||||++.+..+|+.|.+|+.|++++|++.....   .+|+...+               ...|+|+||+++|..
T Consensus        80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~~  144 (398)
T 1kol_A           80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMG---------------DWTGGQAEYVLVPYA  144 (398)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSC---------------CBCCCSBSEEEESSH
T ss_pred             CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCC---------------CCCceeeeEEEecch
Confidence            999999999999888899999999999999999864210   01210000               012499999999986


Q ss_pred             --cEEEcCCCCChhh----hcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          166 --HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       166 --~~~~iP~~ls~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                        +++++|+++++.+    +|++++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+
T Consensus       145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~  223 (398)
T 1kol_A          145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL  223 (398)
T ss_dssp             HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             hCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence              8999999999888    788888999999987 478999999999999999999999999999998899999999999


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          240 EIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       240 ~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++++|++ ++|+.+  ++++.+.+++++++ |+|.++
T Consensus       224 ~~a~~lGa~-~i~~~~--~~~~~~~v~~~t~g~g~Dvvi  259 (398)
T 1kol_A          224 AHAKAQGFE-IADLSL--DTPLHEQIAALLGEPEVDCAV  259 (398)
T ss_dssp             HHHHHTTCE-EEETTS--SSCHHHHHHHHHSSSCEEEEE
T ss_pred             HHHHHcCCc-EEccCC--cchHHHHHHHHhCCCCCCEEE
Confidence            999999997 788765  23488899999988 775554

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=2.6e-43  Score=322.82  Aligned_cols=230  Identities=18%  Similarity=0.151  Sum_probs=202.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCC---CcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~---p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++++++++++++++|.|+|+++||||||+++|||++|++++.|.++...+   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            789999998878999999999999999999999999999999999987654456   8999999999 9999999 9999


Q ss_pred             CCCEEEecCCCC--CCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           94 EGDVVIPHFLAD--CTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        94 ~Gd~V~~~~~~~--c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      +||||++.+..+  |+.|.+|+.|++++|++..... .|. ..+|                   +|+||+++|+++++++
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~~G-------------------~~aey~~v~~~~~~~i  138 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE-RGIVGAHG-------------------YMSEFFTSPEKYLVRI  138 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEE-ETTBEECC-------------------SCBSEEEEEGGGEEEC
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccc-cCccCCCc-------------------ceeeEEEEchHHeEEC
Confidence            999999988888  9999999999999999865410 033 2344                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCC------CEEEEECccHHHHHH-HHHH-HHcCCCeEEEEcCChh---HH
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVG------STVVIFGLGSIGLAV-AEGA-RLCGATRIIGVDVISE---KF  239 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g------~~VlI~G~g~~G~~a-~~la-~~~g~~~vi~~~~~~~---~~  239 (280)
                      |++++ ++ |+++.++.|||+++ +..++++|      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   |+
T Consensus       139 P~~~~-~~-aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~  215 (357)
T 2b5w_A          139 PRSQA-EL-GFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTI  215 (357)
T ss_dssp             CGGGS-TT-GGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHH
T ss_pred             CCCcc-hh-hhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHH
Confidence            99999 55 45677999999987 77888999      999999999999999 9999 9999966999999999   99


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          240 EIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       240 ~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++++++|++++ |+++   +++.+ ++++ ++|+|.++
T Consensus       216 ~~~~~lGa~~v-~~~~---~~~~~-i~~~-~gg~Dvvi  247 (357)
T 2b5w_A          216 DIIEELDATYV-DSRQ---TPVED-VPDV-YEQMDFIY  247 (357)
T ss_dssp             HHHHHTTCEEE-ETTT---SCGGG-HHHH-SCCEEEEE
T ss_pred             HHHHHcCCccc-CCCc---cCHHH-HHHh-CCCCCEEE
Confidence            99999999999 9886   67777 8887 55665544

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=5.4e-42  Score=314.16  Aligned_cols=241  Identities=22%  Similarity=0.303  Sum_probs=203.1

Q ss_pred             CcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCC
Q 023561           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   92 (280)
                      .+++|++++++++.++++++++|.|+|+++||||||.++|||++|++++.|.++...+|.++|||++|+|+++|+++++|
T Consensus         6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~   85 (357)
T 2cf5_A            6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_dssp             CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred             CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence            45789999988876779999999999999999999999999999999998876545679999999999999999999999


Q ss_pred             CCCCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        93 ~~Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      ++||||++.+. .+|+.|.+|+.|++++|++..+. ..+....|              ....|+|+||+++|.++++++|
T Consensus        86 ~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P  150 (357)
T 2cf5_A           86 TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS-YNDVYING--------------QPTQGGFAKATVVHQKFVVKIP  150 (357)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCTTS--------------CBCCCSSBSCEEEEGGGEEECC
T ss_pred             CCCCEEEEcCCCCCCCCChHHhCcCcccCCCcccc-ccccccCC--------------CCCCCccccEEEechhhEEECc
Confidence            99999987554 57999999999999999754321 01100011              1112499999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCC-CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCcE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE  249 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~~  249 (280)
                      +++++++||++++++.|||+++ +..+++ +|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++ ++|+++
T Consensus       151 ~~ls~~~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~  228 (357)
T 2cf5_A          151 EGMAVEQAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADD  228 (357)
T ss_dssp             SSCCHHHHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSC
T ss_pred             CCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCce
Confidence            9999999999999999999975 456788 99999999999999999999999999 8999999999999988 899999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++++++   .   +.++++++ ++|.++
T Consensus       229 vi~~~~---~---~~~~~~~~-g~D~vi  249 (357)
T 2cf5_A          229 YVIGSD---Q---AKMSELAD-SLDYVI  249 (357)
T ss_dssp             EEETTC---H---HHHHHSTT-TEEEEE
T ss_pred             eecccc---H---HHHHHhcC-CCCEEE
Confidence            999875   3   35666653 554443

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=8.6e-41  Score=307.20  Aligned_cols=240  Identities=22%  Similarity=0.339  Sum_probs=200.2

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      +++++++...+..+.++++++|.|+|+++||||||.++|||++|++++.|.++...+|.++|||++|+|+++|+++++|+
T Consensus        14 ~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~   93 (366)
T 1yqd_A           14 PVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVN   93 (366)
T ss_dssp             SEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSCC
T ss_pred             CeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcCC
Confidence            45667777666656699999999999999999999999999999999998765456799999999999999999999999


Q ss_pred             CCCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           94 EGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        94 ~Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      +||||++.+. .+|+.|.+|+.|++++|++..+. ..+....|              ....|+|+||+++|.++++++|+
T Consensus        94 vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P~  158 (366)
T 1yqd_A           94 VGDKVGVGCLVGACHSCESCANDLENYCPKMILT-YASIYHDG--------------TITYGGYSNHMVANERYIIRFPD  158 (366)
T ss_dssp             TTCEEEECSEEECCSSSHHHHTTCGGGCTTCEES-SSSBCTTS--------------CBCCCSSBSEEEEEGGGCEECCT
T ss_pred             CCCEEEEcCCcCCCCCChhhhCcCcccCCccccc-ccccccCC--------------CcCCCccccEEEEchhhEEECCC
Confidence            9999987554 57999999999999999654321 11111111              11124999999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCC-CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCcEE
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF  250 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~~v  250 (280)
                      ++++++||.+++++.|||+++ ...+++ +|++|||+|+|++|++++|+|+.+|+ +|++++++++|++.++ ++|++++
T Consensus       159 ~ls~~~aa~l~~~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v  236 (366)
T 1yqd_A          159 NMPLDGGAPLLCAGITVYSPL-KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSF  236 (366)
T ss_dssp             TSCTTTTGGGGTHHHHHHHHH-HHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEE
T ss_pred             CCCHHHhhhhhhhHHHHHHHH-HhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceE
Confidence            999999999999999999976 456788 99999999999999999999999999 8999999999999887 8999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          251 VNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +|+++   .   +.+.+.++ ++|.++
T Consensus       237 ~~~~~---~---~~~~~~~~-~~D~vi  256 (366)
T 1yqd_A          237 LVSRD---Q---EQMQAAAG-TLDGII  256 (366)
T ss_dssp             EETTC---H---HHHHHTTT-CEEEEE
T ss_pred             EeccC---H---HHHHHhhC-CCCEEE
Confidence            98875   3   35666653 554443

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=1.9e-40  Score=301.88  Aligned_cols=212  Identities=19%  Similarity=0.235  Sum_probs=194.6

Q ss_pred             cceeeeeeecCCCCC---cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCC
Q 023561           14 PIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~---l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      +++|||++++++|+|   ++++++|.|+|+++||||||+++|||++|++++.|.++. ..+|.++|||++|+|+++|+++
T Consensus         2 ~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v   81 (340)
T 3gms_A            2 SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFV   81 (340)
T ss_dssp             CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTS
T ss_pred             CcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCC
Confidence            368999999999987   899999999999999999999999999999999998754 4689999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      ++|++||+|+..                              ..+|                   +|+||+++|.+++++
T Consensus        82 ~~~~vGdrV~~~------------------------------~~~G-------------------~~aey~~v~~~~~~~  112 (340)
T 3gms_A           82 SRELIGKRVLPL------------------------------RGEG-------------------TWQEYVKTSADFVVP  112 (340)
T ss_dssp             CGGGTTCEEEEC------------------------------SSSC-------------------SSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEec------------------------------CCCc-------------------cceeEEEcCHHHeEE
Confidence            999999999632                              1123                   899999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +|+++++++||++++...|+|.++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++|++
T Consensus       113 vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~  191 (340)
T 3gms_A          113 IPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAA  191 (340)
T ss_dssp             CCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS
T ss_pred             CCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCc
Confidence            99999999999999999999998888999999999999998 6999999999999999 899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +++|+++   +++.+.+++++++ |+|.++.
T Consensus       192 ~~~~~~~---~~~~~~~~~~~~~~g~Dvvid  219 (340)
T 3gms_A          192 YVIDTST---APLYETVMELTNGIGADAAID  219 (340)
T ss_dssp             EEEETTT---SCHHHHHHHHTTTSCEEEEEE
T ss_pred             EEEeCCc---ccHHHHHHHHhCCCCCcEEEE
Confidence            9999987   8899999999988 7765543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.3e-40  Score=314.27  Aligned_cols=242  Identities=18%  Similarity=0.170  Sum_probs=205.8

Q ss_pred             CCcceeeeeeecCC---------------CCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC-----------
Q 023561           12 GKPIQCRAAIATAP---------------GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-----------   65 (280)
Q Consensus        12 ~~~~~~~a~~~~~~---------------g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~-----------   65 (280)
                      +.+.+|||+++.++               +++++++++|.|+|+++||||||.++|||++|++...+..           
T Consensus        26 ~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g  105 (456)
T 3krt_A           26 PLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYG  105 (456)
T ss_dssp             CCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHH
T ss_pred             CCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhcc
Confidence            46789999999976               2359999999999999999999999999999987643221           


Q ss_pred             --C----CCCCC-cccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCC-CCCc
Q 023561           66 --F----PAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTS  137 (280)
Q Consensus        66 --~----~~~~p-~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~-~G~~  137 (280)
                        .    ...+| .++|||++|+|+++|+++++|++||+|++.+ ..|..|..|..+..+.|++...   +|+.. +|  
T Consensus       106 ~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~-~~c~~~~~~~~~~~~~c~~~~~---~G~~~~~G--  179 (456)
T 3krt_A          106 RVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHC-LSVELESSDGHNDTMLDPEQRI---WGFETNFG--  179 (456)
T ss_dssp             TSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECC-EECCCCSGGGTTSGGGCTTCEE---TTTTSSSC--
T ss_pred             ccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeC-CcccccccccccccccCccccc---cccCCCCC--
Confidence              0    12457 6999999999999999999999999998854 3688888999999999998765   45543 35  


Q ss_pred             cccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHH--cCCCCCCEEEEECc-cHHH
Q 023561          138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIG  214 (280)
Q Consensus       138 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~G~-g~~G  214 (280)
                                       +|+||+++|.++++++|+++++++||++++++.|||+++...  .++++|++|||+|+ |++|
T Consensus       180 -----------------~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG  242 (456)
T 3krt_A          180 -----------------GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLG  242 (456)
T ss_dssp             -----------------SSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred             -----------------cccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHH
Confidence                             999999999999999999999999999999999999977644  78999999999998 9999


Q ss_pred             HHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCC--------------ccHHHHHHHhcCC-CceEEE
Q 023561          215 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD--------------KSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       215 ~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~--------------~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++++|+|+.+|+ ++|+++++++|+++++++|+++++|+.+.+.              +.+.+.++++++| |+|.++
T Consensus       243 ~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvi  319 (456)
T 3krt_A          243 SYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVF  319 (456)
T ss_dssp             HHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred             HHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEE
Confidence            999999999999 8888888999999999999999999876211              1245889999988 776554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=4.1e-40  Score=301.22  Aligned_cols=213  Identities=23%  Similarity=0.246  Sum_probs=193.7

Q ss_pred             CcceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCC
Q 023561           13 KPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      ++.+|||+++.++|.+  ++++++|.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|+++
T Consensus        25 ~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v  104 (353)
T 4dup_A           25 LPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPGV  104 (353)
T ss_dssp             CCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTTC
T ss_pred             CChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCCC
Confidence            7788999999998865  999999999999999999999999999999999998754 3578999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      ++|++||+|+..                              ..+|                   +|+||+++|.+.+++
T Consensus       105 ~~~~vGdrV~~~------------------------------~~~G-------------------~~aey~~v~~~~~~~  135 (353)
T 4dup_A          105 SGYAVGDKVCGL------------------------------ANGG-------------------AYAEYCLLPAGQILP  135 (353)
T ss_dssp             CSCCTTCEEEEE------------------------------CSSC-------------------CSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEEe------------------------------cCCC-------------------ceeeEEEEcHHHcEe
Confidence            999999999642                              1223                   899999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++|++
T Consensus       136 ~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~  214 (353)
T 4dup_A          136 FPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAK  214 (353)
T ss_dssp             CCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCC
Confidence            99999999999999999999998878899999999999976 9999999999999999 899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCCCceEEEe
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      .++|+++   +++.+.+++++++|+|.++.
T Consensus       215 ~~~~~~~---~~~~~~~~~~~~~g~Dvvid  241 (353)
T 4dup_A          215 RGINYRS---EDFAAVIKAETGQGVDIILD  241 (353)
T ss_dssp             EEEETTT---SCHHHHHHHHHSSCEEEEEE
T ss_pred             EEEeCCc---hHHHHHHHHHhCCCceEEEE
Confidence            9999987   88999999999447765553

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.2e-39  Score=295.63  Aligned_cols=211  Identities=21%  Similarity=0.253  Sum_probs=193.0

Q ss_pred             CcceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC
Q 023561           13 KPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      ++.+|||++++++|++  ++++++|.|+|+++||||||+++|||++|++++.|.++. .+|.++|||++|+|+++|++++
T Consensus         5 ~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~P~i~G~e~~G~V~~vG~~v~   83 (334)
T 3qwb_A            5 IPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC-EKPYVLGREASGTVVAKGKGVT   83 (334)
T ss_dssp             CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC-CSSEECCSEEEEEEEEECTTCC
T ss_pred             CchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCccccceEEEEEEECCCCC
Confidence            6688999999998876  899999999999999999999999999999999998763 5799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEee-cccEEE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVK  169 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~  169 (280)
                      +|++||||+...                               +                   |+|+||++++ .+.+++
T Consensus        84 ~~~~GdrV~~~~-------------------------------~-------------------G~~aey~~v~~~~~~~~  113 (334)
T 3qwb_A           84 NFEVGDQVAYIS-------------------------------N-------------------STFAQYSKISSQGPVMK  113 (334)
T ss_dssp             SCCTTCEEEEEC-------------------------------S-------------------SCSBSEEEEETTSSEEE
T ss_pred             CCCCCCEEEEee-------------------------------C-------------------CcceEEEEecCcceEEE
Confidence            999999997421                               2                   3899999999 999999


Q ss_pred             cCCCCChhh---hcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          170 VDPTVPPNR---ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       170 iP~~ls~~~---aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      +|+++++++   ||++.+.+.|+|+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++
T Consensus       114 ~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~  192 (334)
T 3qwb_A          114 LPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEY  192 (334)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred             CCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc
Confidence            999999999   88888899999998877789999999999995 9999999999999999 899999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          246 GVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       246 Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      |+++++|+++   +++.+.+++++++ |+|.++.
T Consensus       193 ga~~~~~~~~---~~~~~~~~~~~~~~g~D~vid  223 (334)
T 3qwb_A          193 GAEYLINASK---EDILRQVLKFTNGKGVDASFD  223 (334)
T ss_dssp             TCSEEEETTT---SCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCcEEEeCCC---chHHHHHHHHhCCCCceEEEE
Confidence            9999999987   8899999999988 7765543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=1.1e-39  Score=300.26  Aligned_cols=215  Identities=20%  Similarity=0.185  Sum_probs=186.6

Q ss_pred             CcceeeeeeecCCCCCcEEE-EeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC
Q 023561           13 KPIQCRAAIATAPGEPLVID-EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~-~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      ++.+|||++++++++ ++++ ++|.|+|+++||||||.+++||++|++++.+..   ..|.++|||++|+|+++|+++++
T Consensus         8 ~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~---~~p~v~G~e~~G~V~~vG~~v~~   83 (371)
T 3gqv_A            8 PPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFA---TPWAFLGTDYAGTVVAVGSDVTH   83 (371)
T ss_dssp             CCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC-----C---CTTSCCCSEEEEEEEEECTTCCS
T ss_pred             CchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcCC---CCCccCccccEEEEEEeCCCCCC
Confidence            667899999999977 9999 999999999999999999999999999887642   46899999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      |++||||+.       .|..|..+               ...+|                   +|+||++++.+.++++|
T Consensus        84 ~~~GdrV~~-------~~~~~~~~---------------~~~~G-------------------~~aey~~v~~~~~~~~P  122 (371)
T 3gqv_A           84 IQVGDRVYG-------AQNEMCPR---------------TPDQG-------------------AFSQYTVTRGRVWAKIP  122 (371)
T ss_dssp             CCTTCEEEE-------ECCTTCTT---------------CTTCC-------------------SSBSEEECCTTCEEECC
T ss_pred             CCCCCEEEE-------eccCCCCC---------------CCCCC-------------------cCcCeEEEchhheEECC
Confidence            999999953       34444322               22334                   99999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHH-cCC-----------CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRT-ANV-----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~-~~~-----------~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +++++++||++++++.|||+++.+. .++           ++|++|||+|+ |++|++++|+|+.+|+ +||++. +++|
T Consensus       123 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~  200 (371)
T 3gqv_A          123 KGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHN  200 (371)
T ss_dssp             TTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGG
T ss_pred             CCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHH
Confidence            9999999999999999999988777 553           89999999998 9999999999999999 888886 7899


Q ss_pred             HHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          239 FEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       239 ~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++++|+++++|+++   +++.+.+++++++++|.++
T Consensus       201 ~~~~~~lGa~~vi~~~~---~~~~~~v~~~t~g~~d~v~  236 (371)
T 3gqv_A          201 FDLAKSRGAEEVFDYRA---PNLAQTIRTYTKNNLRYAL  236 (371)
T ss_dssp             HHHHHHTTCSEEEETTS---TTHHHHHHHHTTTCCCEEE
T ss_pred             HHHHHHcCCcEEEECCC---chHHHHHHHHccCCccEEE
Confidence            99999999999999988   8899999999988865444

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.1e-39  Score=294.95  Aligned_cols=209  Identities=25%  Similarity=0.259  Sum_probs=192.7

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      |||++++++|++  +++++++.|+|+++||||||+++|||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999999876  999999999999999999999999999999999998776678999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||+|+...                             ..+|                   +|+||+++|.++++++|+++
T Consensus        82 GdrV~~~~-----------------------------~~~G-------------------~~aey~~v~~~~~~~~P~~~  113 (325)
T 3jyn_A           82 GDRVAYGT-----------------------------GPLG-------------------AYSEVHVLPEANLVKLADSV  113 (325)
T ss_dssp             TCEEEESS-----------------------------SSSC-------------------CSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEec-----------------------------CCCc-------------------cccceEEecHHHeEECCCCC
Confidence            99997421                             1223                   89999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      ++++||++++...|+|.++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++|+++++|+
T Consensus       114 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~  192 (325)
T 3jyn_A          114 SFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDY  192 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence            999999999999999998888889999999999996 9999999999999999 89999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      .+   +++.+.+++++++ ++|.++
T Consensus       193 ~~---~~~~~~~~~~~~~~g~Dvvi  214 (325)
T 3jyn_A          193 SH---EDVAKRVLELTDGKKCPVVY  214 (325)
T ss_dssp             TT---SCHHHHHHHHTTTCCEEEEE
T ss_pred             CC---ccHHHHHHHHhCCCCceEEE
Confidence            87   8899999999988 776554

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=2.1e-40  Score=311.99  Aligned_cols=244  Identities=18%  Similarity=0.135  Sum_probs=204.2

Q ss_pred             CCCcceeeeeeecCCC-------------CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhh-------------c-
Q 023561           11 AGKPIQCRAAIATAPG-------------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-------------M-   63 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~g-------------~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~-------------g-   63 (280)
                      .+++.+|||+++.+++             ++++++++|.|+|+++||||||+++|||++|++...             + 
T Consensus        19 ~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~   98 (447)
T 4a0s_A           19 APVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNAR   98 (447)
T ss_dssp             SCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHT
T ss_pred             cCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcc
Confidence            4577899999999987             349999999999999999999999999999985432             1 


Q ss_pred             --CCCC-CCCC-cccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCC-CCCcc
Q 023561           64 --KDFP-AVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSR  138 (280)
Q Consensus        64 --~~~~-~~~p-~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~-~G~~~  138 (280)
                        .+.. ..+| .++|||++|+|+++|+++++|++||||++.+...|+.|. |..+..+.|++...   +|+.. +|   
T Consensus        99 ~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~---~G~~~~~G---  171 (447)
T 4a0s_A           99 QGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRA---WGFETNFG---  171 (447)
T ss_dssp             TCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEE---TTTTSSSC---
T ss_pred             cCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-cccccccccccccc---ccccCCCC---
Confidence              1111 2356 699999999999999999999999999998888787776 45577899988765   55543 25   


Q ss_pred             ccccCCceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHH--HcCCCCCCEEEEECc-cHHHH
Q 023561          139 FKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGL  215 (280)
Q Consensus       139 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~G~-g~~G~  215 (280)
                                      +|+||+++|.++++++|+++++++||++++++.|||+++..  ..++++|++|||+|+ |++|+
T Consensus       172 ----------------~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~  235 (447)
T 4a0s_A          172 ----------------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGS  235 (447)
T ss_dssp             ----------------SSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHH
T ss_pred             ----------------ceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHH
Confidence                            99999999999999999999999999999999999997753  488999999999998 99999


Q ss_pred             HHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCC---------------ccHHHHHHHhcCCCceEEEe
Q 023561          216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD---------------KSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       216 ~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~---------------~~~~~~v~~~~~gg~~~v~~  278 (280)
                      +++|+|+.+|+ +|++++++++|+++++++|+++++|+.+.+.               ..+.+.+++++++|+|.++.
T Consensus       236 ~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid  312 (447)
T 4a0s_A          236 YAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFE  312 (447)
T ss_dssp             HHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEE
T ss_pred             HHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEE
Confidence            99999999999 8888889999999999999999998754110               11367888888437766653

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=1.6e-40  Score=305.18  Aligned_cols=226  Identities=20%  Similarity=0.243  Sum_probs=193.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCC-CeEEEEeeeeecChhhhhhhhc--CCCCCCC---CcccccceeEEEEEeCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKM--KDFPAVF---PRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~-~eVlIkv~~~~i~~~D~~~~~g--~~~~~~~---p~i~G~e~~G~V~~vG~~v~   90 (280)
                      |||+++.+++++++++++|.|+|++ +||||||+++|||++|++++.|  .++...+   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            7899999988779999999999999 9999999999999999999998  5443346   99999999999999  77 8


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCC--CCC-CCCCccccccCCceeecccccceeeeeEEeecccE
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP--WMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~--g~~-~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  167 (280)
                      +|++||||++.+..+|+.|.+|+.|++++|++...   +  |.. .+|                   +|+||++++.+++
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~G-------------------~~aey~~v~~~~~  135 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF---GEAGIHKMDG-------------------FMREWWYDDPKYL  135 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCC---EEETTBEECC-------------------SCBSEEEECGGGE
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCc---ccCCccCCCC-------------------ceeEEEEechHHe
Confidence            89999999999999999999999999999998653   2  332 344                   9999999999999


Q ss_pred             EEcCCCCChhhhcccchhhHHHHHHHH--H--HcCCC--C-------CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          168 VKVDPTVPPNRACLLSCGVSTGVGAAW--R--TANVE--V-------GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       168 ~~iP~~ls~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      +++|++++ ++|+ +..++.|||+++.  +  ..+++  +       |++|||+|+|++|++++|+++.+|+ +|+++++
T Consensus       136 ~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~  212 (366)
T 2cdc_A          136 VKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANR  212 (366)
T ss_dssp             EEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             EECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            99999999 7765 5679999999876  4  77888  8       9999999999999999999999999 9999999


Q ss_pred             Ch---hHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          235 IS---EKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       235 ~~---~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++   +|+++++++|++++ | ++    ++.+.+++ +++++|.++
T Consensus       213 ~~~~~~~~~~~~~~ga~~v-~-~~----~~~~~~~~-~~~~~d~vi  251 (366)
T 2cdc_A          213 REPTEVEQTVIEETKTNYY-N-SS----NGYDKLKD-SVGKFDVII  251 (366)
T ss_dssp             SCCCHHHHHHHHHHTCEEE-E-CT----TCSHHHHH-HHCCEEEEE
T ss_pred             CccchHHHHHHHHhCCcee-c-hH----HHHHHHHH-hCCCCCEEE
Confidence            98   99999999999988 7 42    45566666 555665544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.4e-39  Score=296.47  Aligned_cols=214  Identities=21%  Similarity=0.215  Sum_probs=192.5

Q ss_pred             CCCCcceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeC
Q 023561           10 TAGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVG   86 (280)
Q Consensus        10 ~~~~~~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG   86 (280)
                      +..++.+|||+++.+++.+  ++++++|.|+|+++||||||+++|||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus        15 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG   94 (342)
T 4eye_A           15 QTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAP   94 (342)
T ss_dssp             ---CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECC
T ss_pred             cccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEEC
Confidence            3456789999999998876  999999999999999999999999999999999998753 4679999999999999999


Q ss_pred             CCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeeccc
Q 023561           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (280)
Q Consensus        87 ~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  166 (280)
                      ++++ |++||||+...                              .+|                   +|+||++++.+.
T Consensus        95 ~~v~-~~vGDrV~~~~------------------------------~~G-------------------~~aey~~v~~~~  124 (342)
T 4eye_A           95 EGSG-IKPGDRVMAFN------------------------------FIG-------------------GYAERVAVAPSN  124 (342)
T ss_dssp             TTSS-CCTTCEEEEEC------------------------------SSC-------------------CSBSEEEECGGG
T ss_pred             CCCC-CCCCCEEEEec------------------------------CCC-------------------cceEEEEEcHHH
Confidence            9999 99999997431                              123                   899999999999


Q ss_pred             EEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       167 ~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      ++++|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++
T Consensus       125 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~  203 (342)
T 4eye_A          125 ILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV  203 (342)
T ss_dssp             EEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH
T ss_pred             eEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc
Confidence            99999999999999999999999998878899999999999998 9999999999999999 899999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          246 GVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       246 Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      |++++++++    +++.+.+++++++ |+|.++.
T Consensus       204 ga~~v~~~~----~~~~~~v~~~~~~~g~Dvvid  233 (342)
T 4eye_A          204 GADIVLPLE----EGWAKAVREATGGAGVDMVVD  233 (342)
T ss_dssp             TCSEEEESS----TTHHHHHHHHTTTSCEEEEEE
T ss_pred             CCcEEecCc----hhHHHHHHHHhCCCCceEEEE
Confidence            999999876    5788999999988 7765543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=3.8e-39  Score=295.97  Aligned_cols=216  Identities=19%  Similarity=0.163  Sum_probs=188.1

Q ss_pred             CCCcceeeeeeecCC---CC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEe
Q 023561           11 AGKPIQCRAAIATAP---GE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESV   85 (280)
Q Consensus        11 ~~~~~~~~a~~~~~~---g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~v   85 (280)
                      ...|++|||++++++   +.  .++++++|.|+|+++||||||.+++||++|++++.|..+...+|.++|||++|+|+++
T Consensus        17 ~~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~v   96 (363)
T 4dvj_A           17 NLYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAV   96 (363)
T ss_dssp             --CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEE
T ss_pred             hhhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEe
Confidence            345678999999876   32  3999999999999999999999999999999999998776678999999999999999


Q ss_pred             CCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        86 G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                      |+++++|++||||+...                           +...+|                   +|+||++++.+
T Consensus        97 G~~v~~~~vGdrV~~~~---------------------------~~~~~G-------------------~~aey~~v~~~  130 (363)
T 4dvj_A           97 GPDVTLFRPGDEVFYAG---------------------------SIIRPG-------------------TNAEFHLVDER  130 (363)
T ss_dssp             CTTCCSCCTTCEEEECC---------------------------CTTSCC-------------------SCBSEEEEEGG
T ss_pred             CCCCCCCCCCCEEEEcc---------------------------CCCCCc-------------------cceEEEEeCHH
Confidence            99999999999997431                           122234                   99999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCC-----CCCEEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhH
Q 023561          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-----VGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEK  238 (280)
Q Consensus       166 ~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~-----~g~~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~  238 (280)
                      .++++|+++++++||++++++.|||+++.+..+++     +|++|||+|+ |++|++++|+|+.+ |+ +|++++++++|
T Consensus       131 ~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~  209 (363)
T 4dvj_A          131 IVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPET  209 (363)
T ss_dssp             GCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHH
T ss_pred             HeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHH
Confidence            99999999999999999999999999888888888     8999999995 99999999999985 77 99999999999


Q ss_pred             HHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          239 FEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       239 ~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++++|+++++|+++    ++.+.++++.++|+|.++
T Consensus       210 ~~~~~~lGad~vi~~~~----~~~~~v~~~~~~g~Dvvi  244 (363)
T 4dvj_A          210 QEWVKSLGAHHVIDHSK----PLAAEVAALGLGAPAFVF  244 (363)
T ss_dssp             HHHHHHTTCSEEECTTS----CHHHHHHTTCSCCEEEEE
T ss_pred             HHHHHHcCCCEEEeCCC----CHHHHHHHhcCCCceEEE
Confidence            99999999999999863    688889888444776554

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=5.8e-39  Score=292.49  Aligned_cols=212  Identities=20%  Similarity=0.219  Sum_probs=188.8

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC--CCCCcccccceeEEEEEeCCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      |.+|||+++.+++++++++++|.|+|+++||||||.+++||++|++++.|..+.  ..+|.++|||++|+|+++|+++++
T Consensus         5 ~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~   84 (343)
T 3gaz_A            5 TPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDS   84 (343)
T ss_dssp             -CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             chhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCC
Confidence            478999999999988999999999999999999999999999999999886532  467999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      |++||+|+....                          |. ..+|                   +|+||++++.+.++++
T Consensus        85 ~~vGdrV~~~~~--------------------------g~~~~~G-------------------~~aey~~v~~~~~~~~  119 (343)
T 3gaz_A           85 FRVGDAVFGLTG--------------------------GVGGLQG-------------------THAQFAAVDARLLASK  119 (343)
T ss_dssp             CCTTCEEEEECC--------------------------SSTTCCC-------------------SSBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEEeC--------------------------CCCCCCc-------------------ceeeEEEecHHHeeeC
Confidence            999999975311                          11 1233                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      |+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+..|+ +|+++ .+++|+++++++|++.
T Consensus       120 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~  197 (343)
T 3gaz_A          120 PAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP  197 (343)
T ss_dssp             CTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE
T ss_pred             CCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE
Confidence            9999999999999999999998778899999999999996 9999999999999999 89999 7899999999999998


Q ss_pred             EEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                       ++ ++   +++.+.+++.+++ |+|.++
T Consensus       198 -i~-~~---~~~~~~~~~~~~~~g~D~vi  221 (343)
T 3gaz_A          198 -ID-AS---REPEDYAAEHTAGQGFDLVY  221 (343)
T ss_dssp             -EE-TT---SCHHHHHHHHHTTSCEEEEE
T ss_pred             -ec-cC---CCHHHHHHHHhcCCCceEEE
Confidence             77 55   7889999999988 775554

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.8e-38  Score=289.56  Aligned_cols=210  Identities=24%  Similarity=0.267  Sum_probs=185.9

Q ss_pred             ceeeeeeecCCC-----CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           15 IQCRAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        15 ~~~~a~~~~~~g-----~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      |+|||++++++|     +.++++++|.|+|+++||||||.+++||++|++++.|..  ..+|.++|||++|+|+++|+++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~--~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDV--SKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCC--SSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCC--CCCCcCcCCccEEEEEEeCCCC
Confidence            469999999887     349999999999999999999999999999999998873  3679999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      ++|++||+|+...                           +...+|                   +|+||+++|.+.+++
T Consensus        79 ~~~~~GdrV~~~~---------------------------~~~~~G-------------------~~aey~~v~~~~~~~  112 (346)
T 3fbg_A           79 TMFNQGDIVYYSG---------------------------SPDQNG-------------------SNAEYQLINERLVAK  112 (346)
T ss_dssp             CSCCTTCEEEECC---------------------------CTTSCC-------------------SSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEcC---------------------------CCCCCc-------------------ceeEEEEEChHHeEE
Confidence            9999999997431                           112233                   999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCC------CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVE------VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~------~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +|+++++++||++++++.|||+++.+..+++      +|++|||+|+ |++|++++|+|+.+|+ +|++++++++|++++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT  191 (346)
T ss_dssp             CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred             CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999888888988      9999999965 9999999999999999 999999999999999


Q ss_pred             HHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          243 KRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       243 ~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++|+++++++++    ++.+.+++..++++|.++
T Consensus       192 ~~lGa~~vi~~~~----~~~~~~~~~~~~g~Dvv~  222 (346)
T 3fbg_A          192 KKMGADIVLNHKE----SLLNQFKTQGIELVDYVF  222 (346)
T ss_dssp             HHHTCSEEECTTS----CHHHHHHHHTCCCEEEEE
T ss_pred             HhcCCcEEEECCc----cHHHHHHHhCCCCccEEE
Confidence            9999999999864    588888888333775554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=7.3e-39  Score=288.34  Aligned_cols=190  Identities=21%  Similarity=0.241  Sum_probs=174.2

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |.||||+++++..+.++++++|.|+|+++||||||++++||++|++++.|.++...+|.++|||++|+|+++|+++++|+
T Consensus         2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   81 (315)
T 3goh_A            2 MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM   81 (315)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred             CcceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence            56899999995333499999999999999999999999999999999999887667899999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||||+..+                           +...+|                   +|+||+++|.++++++|++
T Consensus        82 vGdrV~~~~---------------------------~~~~~G-------------------~~aey~~v~~~~~~~iP~~  115 (315)
T 3goh_A           82 LGRRVAYHT---------------------------SLKRHG-------------------SFAEFTVLNTDRVMTLPDN  115 (315)
T ss_dssp             TTCEEEEEC---------------------------CTTSCC-------------------SSBSEEEEETTSEEECCTT
T ss_pred             CCCEEEEeC---------------------------CCCCCc-------------------ccccEEEEcHHHhccCcCC
Confidence            999998642                           222334                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++ +++|+++++++|++++++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~  191 (315)
T 3goh_A          116 LSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR  191 (315)
T ss_dssp             SCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES
T ss_pred             CCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc
Confidence            99999999999999999987 88999999999999999999999999999999 999999 999999999999999984

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=2.1e-38  Score=286.10  Aligned_cols=195  Identities=19%  Similarity=0.203  Sum_probs=173.2

Q ss_pred             CcceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC-----CCCCCCcccccceeEEEEEe
Q 023561           13 KPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-----FPAVFPRILGHEAIGVVESV   85 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~-----~~~~~p~i~G~e~~G~V~~v   85 (280)
                      .|++|||+++.++|++  ++++++|.|+|+++||||||+++|||++|++++.|..     ....+|.++|||++|+|+++
T Consensus         3 ~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~v   82 (321)
T 3tqh_A            3 AMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIEL   82 (321)
T ss_dssp             --CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEE
T ss_pred             ccccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEe
Confidence            4678999999998887  9999999999999999999999999999999998832     12467999999999999999


Q ss_pred             CCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        86 G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                      |+++++|++||||+..+..+                          ..+|                   +|+||++++.+
T Consensus        83 G~~v~~~~~GdrV~~~~~~~--------------------------~~~G-------------------~~aey~~v~~~  117 (321)
T 3tqh_A           83 GSDVNNVNIGDKVMGIAGFP--------------------------DHPC-------------------CYAEYVCASPD  117 (321)
T ss_dssp             CTTCCSCCTTCEEEEECSTT--------------------------TCCC-------------------CSBSEEEECGG
T ss_pred             CCCCCCCCCCCEEEEccCCC--------------------------CCCC-------------------cceEEEEecHH
Confidence            99999999999998653211                          1123                   89999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       166 ~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++++|+++++++||++++++.|||+++ +..++++|++|||+|+ |++|++++|+|+.+|+ +|++++ ++++++++++
T Consensus       118 ~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~  194 (321)
T 3tqh_A          118 TIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA  194 (321)
T ss_dssp             GEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH
T ss_pred             HhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH
Confidence            9999999999999999999999999987 8899999999999985 9999999999999999 888887 5677999999


Q ss_pred             cCCcEEEcCCC
Q 023561          245 FGVTEFVNSKN  255 (280)
Q Consensus       245 ~Ga~~vi~~~~  255 (280)
                      +|+++++|+++
T Consensus       195 lGa~~~i~~~~  205 (321)
T 3tqh_A          195 LGAEQCINYHE  205 (321)
T ss_dssp             HTCSEEEETTT
T ss_pred             cCCCEEEeCCC
Confidence            99999999887

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=3.2e-38  Score=288.78  Aligned_cols=213  Identities=20%  Similarity=0.222  Sum_probs=189.4

Q ss_pred             CCcceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCC
Q 023561           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      ..|.+|||+++.++|.+  +++++++.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|++
T Consensus        18 ~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~   97 (354)
T 2j8z_A           18 LYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPG   97 (354)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSC
T ss_pred             cchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCC
Confidence            35678999999998863  899999999999999999999999999999999987653 246899999999999999999


Q ss_pred             C-CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccE
Q 023561           89 V-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (280)
Q Consensus        89 v-~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  167 (280)
                      + ++|++||+|+...                              .+|                   +|+||++++.+++
T Consensus        98 v~~~~~vGdrV~~~~------------------------------~~G-------------------~~aey~~v~~~~~  128 (354)
T 2j8z_A           98 CQGHWKIGDTAMALL------------------------------PGG-------------------GQAQYVTVPEGLL  128 (354)
T ss_dssp             C--CCCTTCEEEEEC------------------------------SSC-------------------CSBSEEEEEGGGE
T ss_pred             cCCCCCCCCEEEEec------------------------------CCC-------------------cceeEEEeCHHHc
Confidence            9 9999999996431                              123                   8999999999999


Q ss_pred             EEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       168 ~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      +++|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.++++|
T Consensus       129 ~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g  207 (354)
T 2j8z_A          129 MPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLG  207 (354)
T ss_dssp             EECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcC
Confidence            9999999999999999999999998778889999999999996 9999999999999999 8999999999999999999


Q ss_pred             CcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          247 VTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       247 a~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++.++|+++   +++.+.+.+.+++ ++|.++
T Consensus       208 ~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi  236 (354)
T 2j8z_A          208 AAAGFNYKK---EDFSEATLKFTKGAGVNLIL  236 (354)
T ss_dssp             CSEEEETTT---SCHHHHHHHHTTTSCEEEEE
T ss_pred             CcEEEecCC---hHHHHHHHHHhcCCCceEEE
Confidence            999999887   7889999998887 765554

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=288.55  Aligned_cols=209  Identities=21%  Similarity=0.262  Sum_probs=187.3

Q ss_pred             ceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 023561           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        15 ~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      ++|||+++++++.+  +++++++.|+|+++||||||++++||++|++++.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            67999999999863  999999999999999999999999999999999998653 468999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      |++||+|+...                              .+                   |+|+||++++.++++++|
T Consensus        82 ~~~GdrV~~~~------------------------------~~-------------------G~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           82 YEIGDRVMAFV------------------------------NY-------------------NAWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             CCTTCEEEEEC------------------------------SS-------------------CCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEec------------------------------CC-------------------CcceEEEEecHHHeEECC
Confidence            99999996431                              12                   389999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      +++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|..+|++++ +++|++.++ +|++++
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~  190 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHL  190 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEE
Confidence            999999999999999999998888899999999999998 99999999999999755888887 668888888 999999


Q ss_pred             EcCCCCCCccHHHHHHHhcCCCceEEEe
Q 023561          251 VNSKNCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       251 i~~~~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      +| ++   +++.+.+++++++|+|.++.
T Consensus       191 ~~-~~---~~~~~~~~~~~~~g~Dvv~d  214 (349)
T 4a27_A          191 FD-RN---ADYVQEVKRISAEGVDIVLD  214 (349)
T ss_dssp             EE-TT---SCHHHHHHHHCTTCEEEEEE
T ss_pred             Ec-CC---ccHHHHHHHhcCCCceEEEE
Confidence            99 65   78999999998668765553

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.4e-37  Score=284.23  Aligned_cols=213  Identities=22%  Similarity=0.287  Sum_probs=190.4

Q ss_pred             cceeeeeeecCCCCC--cEE-EEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCC
Q 023561           14 PIQCRAAIATAPGEP--LVI-DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~--l~~-~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      +.+|||+++.+++.+  +++ +++|.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|+++
T Consensus        27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v  106 (351)
T 1yb5_A           27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA  106 (351)
T ss_dssp             -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence            356999999988764  888 899999999999999999999999999999987642 4579999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      ++|++||||+..+.                             .+|                   +|+||++++.+.+++
T Consensus       107 ~~~~vGdrV~~~~~-----------------------------~~G-------------------~~aey~~v~~~~~~~  138 (351)
T 1yb5_A          107 SAFKKGDRVFTSST-----------------------------ISG-------------------GYAEYALAADHTVYK  138 (351)
T ss_dssp             TTCCTTCEEEESCC-----------------------------SSC-------------------SSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEEeCC-----------------------------CCC-------------------cceeEEEECHHHeEE
Confidence            99999999975321                             123                   899999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|++++++++++++++++|++
T Consensus       139 ~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~  217 (351)
T 1yb5_A          139 LPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAH  217 (351)
T ss_dssp             CCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCS
T ss_pred             CCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCC
Confidence            99999999999999999999998877889999999999998 9999999999999999 899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      .++|+++   +++.+.+++.+++ ++|.++.
T Consensus       218 ~~~d~~~---~~~~~~~~~~~~~~~~D~vi~  245 (351)
T 1yb5_A          218 EVFNHRE---VNYIDKIKKYVGEKGIDIIIE  245 (351)
T ss_dssp             EEEETTS---TTHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEeCCC---chHHHHHHHHcCCCCcEEEEE
Confidence            9999887   7888999998887 7765543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=8e-39  Score=292.08  Aligned_cols=214  Identities=18%  Similarity=0.184  Sum_probs=186.0

Q ss_pred             Ccceeeeeeec--CC---CCCcEEEEe---------ecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccc
Q 023561           13 KPIQCRAAIAT--AP---GEPLVIDEV---------IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHE   77 (280)
Q Consensus        13 ~~~~~~a~~~~--~~---g~~l~~~~~---------~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e   77 (280)
                      ++.+|||++++  ++   .+.++++++         |.|+|+++||||||+++|||++|++++.|.++. ..+|.++|||
T Consensus         7 ~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E   86 (349)
T 3pi7_A            7 IPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFE   86 (349)
T ss_dssp             CCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCSE
T ss_pred             CchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccce
Confidence            56789999999  33   233888888         999999999999999999999999999997653 3679999999


Q ss_pred             eeEEEEEeCCCC-CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeeccccccee
Q 023561           78 AIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (280)
Q Consensus        78 ~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~  156 (280)
                      ++|+|+++|+++ ++|++||+|+..                           .|...+|                   +|
T Consensus        87 ~~G~V~~vG~~v~~~~~vGdrV~~~---------------------------~g~~~~G-------------------~~  120 (349)
T 3pi7_A           87 GVGTIVAGGDEPYAKSLVGKRVAFA---------------------------TGLSNWG-------------------SW  120 (349)
T ss_dssp             EEEEEEEECSSHHHHHHTTCEEEEE---------------------------CTTSSCC-------------------SS
T ss_pred             EEEEEEEECCCccCCCCCCCEEEEe---------------------------ccCCCCc-------------------cc
Confidence            999999999999 899999999754                           2223344                   99


Q ss_pred             eeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCC-CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       157 ~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      +||+++|.+.++++|+++++++||++++...|||. +++..+ ++| ++|+|+|+ |++|++++|+|+.+|+ +|+++++
T Consensus       121 aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~  197 (349)
T 3pi7_A          121 AEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVR  197 (349)
T ss_dssp             BSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             eeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            99999999999999999999999999999999996 566666 666 78898865 9999999999999999 9999999


Q ss_pred             ChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          235 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       235 ~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +++|+++++++|+++++|+++   +++.+.+++++++ |+|.++.
T Consensus       198 ~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~~~g~D~vid  239 (349)
T 3pi7_A          198 RDEQIALLKDIGAAHVLNEKA---PDFEATLREVMKAEQPRIFLD  239 (349)
T ss_dssp             CGGGHHHHHHHTCSEEEETTS---TTHHHHHHHHHHHHCCCEEEE
T ss_pred             CHHHHHHHHHcCCCEEEECCc---HHHHHHHHHHhcCCCCcEEEE
Confidence            999999999999999999987   8899999999988 8766653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-37  Score=279.76  Aligned_cols=209  Identities=19%  Similarity=0.193  Sum_probs=187.7

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   94 (280)
                      |||+++.++|.+  +++++++.|+|+++||||||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~   81 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKA   81 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999988764  889999999999999999999999999999999987654457999999999999999999999999


Q ss_pred             CCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        95 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      ||||...                            | ..+|                   +|+||+++|.+.++++|+++
T Consensus        82 GdrV~~~----------------------------g-~~~G-------------------~~aey~~v~~~~~~~iP~~l  113 (327)
T 1qor_A           82 GDRVVYA----------------------------Q-SALG-------------------AYSSVHNIIADKAAILPAAI  113 (327)
T ss_dssp             TCEEEES----------------------------C-CSSC-------------------CSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEC----------------------------C-CCCc-------------------eeeeEEEecHHHcEECCCCC
Confidence            9999421                            0 0123                   89999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      ++++||++++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.++++|++.++|+
T Consensus       114 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~  192 (327)
T 1qor_A          114 SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINY  192 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence            999999999999999998777889999999999996 9999999999999999 89999999999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      .+   +++.+.+.+.+++ ++|.++
T Consensus       193 ~~---~~~~~~~~~~~~~~~~D~vi  214 (327)
T 1qor_A          193 RE---EDLVERLKEITGGKKVRVVY  214 (327)
T ss_dssp             TT---SCHHHHHHHHTTTCCEEEEE
T ss_pred             CC---ccHHHHHHHHhCCCCceEEE
Confidence            87   7888999998877 765554

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=6.2e-38  Score=287.12  Aligned_cols=214  Identities=20%  Similarity=0.263  Sum_probs=180.0

Q ss_pred             CCCCcceeeeeeecCCCCC---cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEe
Q 023561           10 TAGKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESV   85 (280)
Q Consensus        10 ~~~~~~~~~a~~~~~~g~~---l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~v   85 (280)
                      ..+++.+|||+++.++|.+   ++++++|.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++
T Consensus        20 ~~~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~v   99 (357)
T 1zsy_A           20 FQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAV   99 (357)
T ss_dssp             CCCCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEE
T ss_pred             hhhCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEe
Confidence            3446678999999999985   889999999999999999999999999999999987654 257999999999999999


Q ss_pred             CCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        86 G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                      |+++++|++||||+..+.                             .+                   |+|+||++++.+
T Consensus       100 G~~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~  131 (357)
T 1zsy_A          100 GSNVTGLKPGDWVIPANA-----------------------------GL-------------------GTWRTEAVFSEE  131 (357)
T ss_dssp             CTTCCSCCTTCEEEESSS-----------------------------CS-------------------CCSBSEEEEEGG
T ss_pred             CCCCCCCCCCCEEEEcCC-----------------------------CC-------------------ccceeEEecCHH
Confidence            999999999999975321                             02                   389999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CCh---hHHH
Q 023561          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VIS---EKFE  240 (280)
Q Consensus       166 ~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~---~~~~  240 (280)
                      .++++|+++++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+||.+|+ ++|++. .++   ++++
T Consensus       132 ~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~  210 (357)
T 1zsy_A          132 ALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSD  210 (357)
T ss_dssp             GEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHH
T ss_pred             HcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHH
Confidence            999999999999999999889999998877789999999999998 9999999999999999 555554 332   3678


Q ss_pred             HHHHcCCcEEEcCCCCCCccHHHHHHHhcCC--CceEE
Q 023561          241 IGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL--PLLTI  276 (280)
Q Consensus       241 ~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g--g~~~v  276 (280)
                      +++++|+++++|+++   . ..+.+.+++.+  ++|.+
T Consensus       211 ~~~~lGa~~vi~~~~---~-~~~~~~~~~~~~~~~Dvv  244 (357)
T 1zsy_A          211 RLKSLGAEHVITEEE---L-RRPEMKNFFKDMPQPRLA  244 (357)
T ss_dssp             HHHHTTCSEEEEHHH---H-HSGGGGGTTSSSCCCSEE
T ss_pred             HHHhcCCcEEEecCc---c-hHHHHHHHHhCCCCceEE
Confidence            899999999998653   1 12345566655  35443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=6.8e-38  Score=287.25  Aligned_cols=215  Identities=18%  Similarity=0.163  Sum_probs=183.9

Q ss_pred             cceeeeeeecCCCCC---cEEEEeecCCCC--CCeEEEEeeeeecChhhhhhhhcCCCC-CCCC---------cccccce
Q 023561           14 PIQCRAAIATAPGEP---LVIDEVIVDPPN--SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFP---------RILGHEA   78 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~---l~~~~~~~p~~~--~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p---------~i~G~e~   78 (280)
                      |++|||++++++|++   ++++++|.|+|.  ++||||||+++|||++|++++.|.++. ..+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            578999999999975   899999999887  999999999999999999999987653 2456         8999999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeee
Q 023561           79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (280)
Q Consensus        79 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~  158 (280)
                      +|+|+++|+++++|++||+|+..+.                             .+                   |+|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-------------------GTWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-------------------CCSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC-----------------------------CC-------------------Ccchh
Confidence            9999999999999999999975321                             12                   38999


Q ss_pred             eEEeecccEEEcCC-----------CCChhhhcccchhhHHHHHHHHHHcCCCCC-CEEEEECc-cHHHHHHHHHHHHcC
Q 023561          159 YTVLDIAHVVKVDP-----------TVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFGL-GSIGLAVAEGARLCG  225 (280)
Q Consensus       159 ~~~~~~~~~~~iP~-----------~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~VlI~G~-g~~G~~a~~la~~~g  225 (280)
                      |++++.+.++++|+           ++++++||++++++.|||+++.+..++++| ++|||+|+ |++|++++|+|+.+|
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G  192 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN  192 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence            99999999999998           899999999999999999987666789999 99999998 999999999999999


Q ss_pred             CCeEEEEcCChhH----HHHHHHcCCcEEEcCCCCCCccHHHHHHHhc--CC-CceEEE
Q 023561          226 ATRIIGVDVISEK----FEIGKRFGVTEFVNSKNCGDKSVSQVLLSIY--DL-PLLTIS  277 (280)
Q Consensus       226 ~~~vi~~~~~~~~----~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~--~g-g~~~v~  277 (280)
                      + ++|++.++.++    +++++++|+++++|+++...+++.+.+++++  ++ |+|.++
T Consensus       193 a-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvi  250 (364)
T 1gu7_A          193 F-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLAL  250 (364)
T ss_dssp             C-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEE
T ss_pred             C-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEE
Confidence            9 77777655543    6788899999999876311146788899988  55 765554

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=2.9e-37  Score=279.95  Aligned_cols=209  Identities=24%  Similarity=0.276  Sum_probs=184.0

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC--CC-CCCCcccccceeEEEEEeCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD--FP-AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~--~~-~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      |||+++.++|.+  ++++++|.|+|+++||||||.++|||++|++++.|.+  +. ..+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            799999988864  8899999999999999999999999999999998865  21 357999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      |++||||+..+.                             .+|                   +|+||+++|.+.++++|
T Consensus        82 ~~~GdrV~~~~~-----------------------------~~G-------------------~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP-----------------------------PLG-------------------AYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS-----------------------------SCC-------------------CSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC-----------------------------CCC-------------------cceeEEEecHHHcEeCC
Confidence            999999964311                             123                   89999999999999999


Q ss_pred             CCCChhh--hcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          172 PTVPPNR--ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       172 ~~ls~~~--aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +++++++  ||++++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.++++|++
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~  192 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCH  192 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999  89999999999998777889999999999997 9999999999999999 899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          249 EFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       249 ~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      .++|+++   +++.+.+.+.+++ ++|.++
T Consensus       193 ~~~d~~~---~~~~~~i~~~~~~~~~d~vi  219 (333)
T 1wly_A          193 HTINYST---QDFAEVVREITGGKGVDVVY  219 (333)
T ss_dssp             EEEETTT---SCHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCC---HHHHHHHHHHhCCCCCeEEE
Confidence            9999887   7888999998877 775554

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.4e-36  Score=279.92  Aligned_cols=213  Identities=22%  Similarity=0.244  Sum_probs=183.2

Q ss_pred             CCcceeeeeeecCCCCC--cEE-EEeecCCC-CCCeEEEEeeeeecChhhhhhhhcCCC-------------C--CCCCc
Q 023561           12 GKPIQCRAAIATAPGEP--LVI-DEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF-------------P--AVFPR   72 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~--l~~-~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g~~~-------------~--~~~p~   72 (280)
                      +++.+|||+++.++|.+  +++ +++|.|+| +++||||||.++|||++|++++.|..+             .  ..+|.
T Consensus        17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~   96 (375)
T 2vn8_A           17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL   96 (375)
T ss_dssp             -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred             ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence            35678999999998854  888 99999985 999999999999999999999987531             1  23799


Q ss_pred             ccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccc
Q 023561           73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS  152 (280)
Q Consensus        73 i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~  152 (280)
                      ++|||++|+|+++|+++++|++||+|+..+.                           ...+|                 
T Consensus        97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~---------------------------~~~~G-----------------  132 (375)
T 2vn8_A           97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVP---------------------------PWKQG-----------------  132 (375)
T ss_dssp             CCCCEEEEEEEEECTTCCSCCTTCEEEEECC---------------------------TTSCC-----------------
T ss_pred             ccceeeeEEEEEeCCCCCCCCCCCEEEEecC---------------------------CCCCc-----------------
Confidence            9999999999999999999999999976421                           11123                 


Q ss_pred             cceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcC----CCCCCEEEEECc-cHHHHHHHHHHHHcCCC
Q 023561          153 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN----VEVGSTVVIFGL-GSIGLAVAEGARLCGAT  227 (280)
Q Consensus       153 ~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~----~~~g~~VlI~G~-g~~G~~a~~la~~~g~~  227 (280)
                        +|+||++++.++++++|+++++++||++++++.|||+++.+..+    +++|++|||+|+ |++|++++|+|+.+|+ 
T Consensus       133 --~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-  209 (375)
T 2vn8_A          133 --TLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-  209 (375)
T ss_dssp             --SSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-
T ss_pred             --cceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-
Confidence              89999999999999999999999999999999999998767778    899999999996 9999999999999999 


Q ss_pred             eEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          228 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       228 ~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +|++++ +++|+++++++|+++++|+++   +++.+.+++.  +|+|.++
T Consensus       210 ~Vi~~~-~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~~--~g~D~vi  253 (375)
T 2vn8_A          210 HVTAVC-SQDASELVRKLGADDVIDYKS---GSVEEQLKSL--KPFDFIL  253 (375)
T ss_dssp             EEEEEE-CGGGHHHHHHTTCSEEEETTS---SCHHHHHHTS--CCBSEEE
T ss_pred             EEEEEe-ChHHHHHHHHcCCCEEEECCc---hHHHHHHhhc--CCCCEEE
Confidence            889888 678999999999999999887   7777777653  3565544

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.2e-37  Score=279.50  Aligned_cols=209  Identities=14%  Similarity=0.082  Sum_probs=179.5

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||++++++|++  ++++++|.|+|+++||||||++++||++|++++.|..+. ..+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            799999999976  889999999999999999999999999999999998764 4689999999999999998  57899


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||||++.+   |                     ..|...+|                   +|+||+++|.++++++|++
T Consensus        79 vGdrV~~~~---~---------------------~~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTG---W---------------------GVGENHWG-------------------GLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEEC---T---------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEcc---c---------------------ccCCCCCC-------------------ceeeEEecCHHHcEECCCC
Confidence            999998653   1                     13333445                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHH--HHcCCCCCC-EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          174 VPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +++++||++++.+.|||.++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|+++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  194 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANR  194 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999999999998765  445666643 4999998 9999999999999999 8999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++|+++   .+.   +++++++++|.++
T Consensus       195 vi~~~~---~~~---~~~~~~~~~d~v~  216 (324)
T 3nx4_A          195 ILSRDE---FAE---SRPLEKQLWAGAI  216 (324)
T ss_dssp             EEEGGG---SSC---CCSSCCCCEEEEE
T ss_pred             EEecCC---HHH---HHhhcCCCccEEE
Confidence            999876   332   5556666765443

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.7e-36  Score=278.15  Aligned_cols=210  Identities=20%  Similarity=0.194  Sum_probs=185.5

Q ss_pred             CcceeeeeeecCCCC----CcEE-EEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeC
Q 023561           13 KPIQCRAAIATAPGE----PLVI-DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVG   86 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~----~l~~-~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG   86 (280)
                      .+.+|||++++++|.    .+++ +++|.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            456799999999875    3889 999999999999999999999999999999987643 4679999999999999999


Q ss_pred             CCCC-CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           87 ENVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        87 ~~v~-~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                      ++++ +|++||||+...                               +                   |+|+||+++|.+
T Consensus       100 ~~V~~~~~vGdrV~~~~-------------------------------~-------------------G~~aey~~v~~~  129 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA-------------------------------P-------------------GSFAEYTVVPAS  129 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC-------------------------------S-------------------CCSBSEEEEEGG
T ss_pred             CCccCCCCCCCEEEEcc-------------------------------C-------------------CcceeEEEEcHH
Confidence            9999 999999997431                               1                   389999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       166 ~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++++|+. + .++|++.+++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|++++++
T Consensus       130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          130 IATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             GCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            99999986 4 4567777899999998888889999999999996 9999999999999999 89999999999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEEe
Q 023561          245 FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       245 ~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      +|++.++|+++   +++.+.+++.+++|+|.++.
T Consensus       207 ~Ga~~~~~~~~---~~~~~~~~~~~~~g~D~vid  237 (362)
T 2c0c_A          207 LGCDRPINYKT---EPVGTVLKQEYPEGVDVVYE  237 (362)
T ss_dssp             TTCSEEEETTT---SCHHHHHHHHCTTCEEEEEE
T ss_pred             cCCcEEEecCC---hhHHHHHHHhcCCCCCEEEE
Confidence            99999999887   78888888887557765543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=2.6e-37  Score=285.25  Aligned_cols=209  Identities=17%  Similarity=0.173  Sum_probs=184.6

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC---------------------------
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---------------------------   66 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~---------------------------   66 (280)
                      ..+|||++.......+++++++.|+|+++||||||++++||++|++++.|..+                           
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            46799998865444599999999999999999999999999999999988521                           


Q ss_pred             --CCCCCcccccceeEEEEEeCCCC-CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccC
Q 023561           67 --PAVFPRILGHEAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR  143 (280)
Q Consensus        67 --~~~~p~i~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~  143 (280)
                        ...+|.++|||++|+|+++|+++ ++|++||+|+..+                               +         
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-------------------------------~---------  124 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-------------------------------G---------  124 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-------------------------------S---------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-------------------------------C---------
Confidence              13468999999999999999999 8899999997531                               1         


Q ss_pred             CceeecccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEEC--ccHHHHHHHHHH
Q 023561          144 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG--LGSIGLAVAEGA  221 (280)
Q Consensus       144 ~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G--~g~~G~~a~~la  221 (280)
                                |+|+||+++|.++++++|+++++++||++++...|||.+ ++... ++|++|||+|  +|++|++++|+|
T Consensus       125 ----------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-~~~~~-~~g~~vlV~gag~G~vG~~a~q~a  192 (379)
T 3iup_A          125 ----------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGM-VETMR-LEGHSALVHTAAASNLGQMLNQIC  192 (379)
T ss_dssp             ----------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHH-HHHHH-HTTCSCEEESSTTSHHHHHHHHHH
T ss_pred             ----------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHH-HHHhc-cCCCEEEEECCCCCHHHHHHHHHH
Confidence                      389999999999999999999999999999999999975 45555 8999999994  499999999999


Q ss_pred             HHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       222 ~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +.+|+ +|++++++++|+++++++|+++++|+++   +++.+.+++++++ |+|.++.
T Consensus       193 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~v~~~t~~~g~d~v~d  246 (379)
T 3iup_A          193 LKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS---PTFMQDLTEALVSTGATIAFD  246 (379)
T ss_dssp             HHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS---TTHHHHHHHHHHHHCCCEEEE
T ss_pred             HHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC---hHHHHHHHHHhcCCCceEEEE
Confidence            99999 7999999999999999999999999987   8899999999988 8766553

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.5e-36  Score=273.16  Aligned_cols=214  Identities=15%  Similarity=0.111  Sum_probs=175.4

Q ss_pred             cceeeeeeecCCCC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCC
Q 023561           14 PIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        14 ~~~~~a~~~~~~g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      |.+|||+++++++.  .++++++|.|+|+++||||||.++|||++|++++.|..+. ..+|.++|||++|+|+++  +++
T Consensus         1 m~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~   78 (328)
T 1xa0_A            1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHP   78 (328)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSS
T ss_pred             CCcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCC
Confidence            45799999998874  3889999999999999999999999999999999886542 357999999999999995  568


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      +|++||||++.+.                        ..|...+|                   +|+||+++|.+.++++
T Consensus        79 ~~~vGdrV~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~~~~~  115 (328)
T 1xa0_A           79 RFREGDEVIATGY------------------------EIGVTHFG-------------------GYSEYARLHGEWLVPL  115 (328)
T ss_dssp             SCCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSEEEECGGGCEEC
T ss_pred             CCCCCCEEEEccc------------------------cCCCCCCc-------------------cceeEEEechHHeEEC
Confidence            8999999976421                        02222334                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHH--HHcCCCCCC-EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      |+++++++||++++++.|+|.++.  +..++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|
T Consensus       116 P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lG  194 (328)
T 1xa0_A          116 PKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLG  194 (328)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTT
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcC
Confidence            999999999999999999998654  456788986 9999998 9999999999999999 7999999999999999999


Q ss_pred             CcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          247 VTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       247 a~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++|+++   .+ .+.+++++++++|.++
T Consensus       195 a~~~i~~~~---~~-~~~~~~~~~~~~d~vi  221 (328)
T 1xa0_A          195 AKEVLARED---VM-AERIRPLDKQRWAAAV  221 (328)
T ss_dssp             CSEEEECC-------------CCSCCEEEEE
T ss_pred             CcEEEecCC---cH-HHHHHHhcCCcccEEE
Confidence            999999875   33 3445666555765544

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=1.3e-36  Score=275.21  Aligned_cols=197  Identities=18%  Similarity=0.201  Sum_probs=170.6

Q ss_pred             CcceeeeeeecCCCC--CcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCC
Q 023561           13 KPIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~--~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      ||.+|||+++++++.  .++++++|.|+|+++||||||+++|||++|++++.|..+. ..+|.++|||++|+|+++  ++
T Consensus         1 m~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v   78 (330)
T 1tt7_A            1 MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--ND   78 (330)
T ss_dssp             -CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SS
T ss_pred             CCCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CC
Confidence            457899999998873  4899999999999999999999999999999999886543 357999999999999996  46


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      ++|++||||++.+.                        .+|...+|                   +|+||+++|.+.+++
T Consensus        79 ~~~~vGdrV~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~~~~  115 (330)
T 1tt7_A           79 PRFAEGDEVIATSY------------------------ELGVSRDG-------------------GLSEYASVPGDWLVP  115 (330)
T ss_dssp             TTCCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSSEEECGGGEEE
T ss_pred             CCCCCCCEEEEccc------------------------ccCCCCCc-------------------cceeEEEecHHHeEE
Confidence            78999999986421                        02323344                   999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHH--HHcCCCCCC-EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~--~~~~~~~g~-~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      +|+++++++||++++++.|+|.++.  +..++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++
T Consensus       116 iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l  194 (330)
T 1tt7_A          116 LPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL  194 (330)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH
T ss_pred             CCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc
Confidence            9999999999999999999998654  446788986 9999998 9999999999999999 799999999999999999


Q ss_pred             CCcEEEcCCC
Q 023561          246 GVTEFVNSKN  255 (280)
Q Consensus       246 Ga~~vi~~~~  255 (280)
                      |+++++|+++
T Consensus       195 Ga~~v~~~~~  204 (330)
T 1tt7_A          195 GASEVISRED  204 (330)
T ss_dssp             TCSEEEEHHH
T ss_pred             CCcEEEECCC
Confidence            9999998654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=9.1e-35  Score=263.69  Aligned_cols=205  Identities=21%  Similarity=0.202  Sum_probs=180.3

Q ss_pred             ceeeeeeecC--CC----CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccc----eeEEEEE
Q 023561           15 IQCRAAIATA--PG----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE----AIGVVES   84 (280)
Q Consensus        15 ~~~~a~~~~~--~g----~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e----~~G~V~~   84 (280)
                      ++|||+++++  +|    +.++++++|.|+|+++||||||++++||++|+..+.+... ...|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~-~~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS-YIPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC-SSCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc-cCCCCCCCcccCCceEEEEEe
Confidence            5799999985  12    3499999999999999999999999999999988876433 2457788888    7999999


Q ss_pred             eCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec
Q 023561           85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (280)
Q Consensus        85 vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  164 (280)
                      .  ++++|++||||+..                                                    |+|+||+++|.
T Consensus        85 ~--~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v~~  110 (336)
T 4b7c_A           85 S--KHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIGEP  110 (336)
T ss_dssp             E--CSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEECC
T ss_pred             c--CCCCCCCCCEEecc----------------------------------------------------CCceEEEEech
Confidence            4  58899999999732                                                    38999999999


Q ss_pred             ccEEEcCCCCChhhh--cccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          165 AHVVKVDPTVPPNRA--CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       165 ~~~~~iP~~ls~~~a--a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +.++++|+++++.++  |++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|+ +|++++++++|++.
T Consensus       111 ~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~  189 (336)
T 4b7c_A          111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF  189 (336)
T ss_dssp             TTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred             HHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            999999999987776  7788999999998888999999999999998 9999999999999999 99999999999999


Q ss_pred             H-HHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEEe
Q 023561          242 G-KRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       242 ~-~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      + +++|+++++|+.+   +++.+.+++.+++|+|.++.
T Consensus       190 ~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~d~vi~  224 (336)
T 4b7c_A          190 LVEELGFDGAIDYKN---EDLAAGLKRECPKGIDVFFD  224 (336)
T ss_dssp             HHHTTCCSEEEETTT---SCHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHcCCCEEEECCC---HHHHHHHHHhcCCCceEEEE
Confidence            9 8899999999987   88999999999667766553

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=3.7e-34  Score=261.86  Aligned_cols=208  Identities=19%  Similarity=0.256  Sum_probs=180.8

Q ss_pred             Ccceeeeeee-cCC---CC----CcEEEEeecCCC-CCCeEEEEeeeeecChhhhhhhhc----CCC-CCCCCcccccce
Q 023561           13 KPIQCRAAIA-TAP---GE----PLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKM----KDF-PAVFPRILGHEA   78 (280)
Q Consensus        13 ~~~~~~a~~~-~~~---g~----~l~~~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g----~~~-~~~~p~i~G~e~   78 (280)
                      +|++|||+++ ..+   |.    .++++++|.|+| +++||||||.++|||++|++.+.+    .+. ...+|.++|||+
T Consensus         5 ~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~   84 (357)
T 2zb4_A            5 AAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGG   84 (357)
T ss_dssp             -CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEE
T ss_pred             ccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccE
Confidence            5678999999 565   43    399999999999 999999999999999999987765    222 235789999999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeee
Q 023561           79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (280)
Q Consensus        79 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~  158 (280)
                      +|+|++  +++++|++||||+..                                                   .|+|+|
T Consensus        85 ~G~V~~--~~v~~~~vGdrV~~~---------------------------------------------------~G~~ae  111 (357)
T 2zb4_A           85 IGIIEE--SKHTNLTKGDFVTSF---------------------------------------------------YWPWQT  111 (357)
T ss_dssp             EEEEEE--ECSTTCCTTCEEEEE---------------------------------------------------EEESBS
T ss_pred             EEEEEe--cCCCCCCCCCEEEec---------------------------------------------------CCCcEE
Confidence            999999  889999999999742                                                   138999


Q ss_pred             eEEeecccEEEcCCCC-----ChhhhcccchhhHHHHHHHHHHcCCCCC--CEEEEECc-cHHHHHHHHHHHHcCCCeEE
Q 023561          159 YTVLDIAHVVKVDPTV-----PPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRII  230 (280)
Q Consensus       159 ~~~~~~~~~~~iP~~l-----s~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~G~-g~~G~~a~~la~~~g~~~vi  230 (280)
                      |++++.++++++|+++     +++ +|++++++.|||+++.+..++++|  ++|||+|+ |++|++++++++..|+++|+
T Consensus       112 y~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi  190 (357)
T 2zb4_A          112 KVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVV  190 (357)
T ss_dssp             EEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEE
Confidence            9999999999999999     555 677888999999988788999999  99999998 99999999999999997899


Q ss_pred             EEcCChhHHHHHHH-cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          231 GVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       231 ~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++++++++++.+++ +|++.++|+++   +++.+.+++.+++++|.++
T Consensus       191 ~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~~~~~~~~~~d~vi  235 (357)
T 2zb4_A          191 GICGTHEKCILLTSELGFDAAINYKK---DNVAEQLRESCPAGVDVYF  235 (357)
T ss_dssp             EEESCHHHHHHHHHTSCCSEEEETTT---SCHHHHHHHHCTTCEEEEE
T ss_pred             EEeCCHHHHHHHHHHcCCceEEecCc---hHHHHHHHHhcCCCCCEEE
Confidence            99999999999987 99999999887   7888999998877765554

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=6.3e-33  Score=248.16  Aligned_cols=176  Identities=21%  Similarity=0.259  Sum_probs=160.1

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||+++.+++++..++++|.|+|+++||||||+++|||++|++++.|.++. ..+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            689999999987667899999999999999999999999999999987653 3579999999999998           9


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |||+..+                              .+                   |+|+||++++.+.++++|++++
T Consensus        70 drV~~~~------------------------------~~-------------------G~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALV------------------------------PQ-------------------GGLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEEC------------------------------SS-------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEec------------------------------CC-------------------cceeeEEEEcHHHcEeCCCCCC
Confidence            9997532                              12                   3899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      +++||++++++.|||+++.+.. +++|++|||+|+ |++|++++|+++.+|+ +|++++++++|+++++++|+++++|++
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~  178 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYA  178 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGG
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECC
Confidence            9999999999999999887677 999999999998 9999999999999999 899999999999999999999998865

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=1.5e-31  Score=242.32  Aligned_cols=206  Identities=16%  Similarity=0.125  Sum_probs=172.8

Q ss_pred             CCcceeeeeeecCC--C----CCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEe
Q 023561           12 GKPIQCRAAIATAP--G----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESV   85 (280)
Q Consensus        12 ~~~~~~~a~~~~~~--g----~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~v   85 (280)
                      ..+++|||+++.++  |    +.++++++|.|+|+++||||||+++|||+.|... ..   ...+|.++|||++|+|++.
T Consensus         3 ~~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~---~~~~p~~~g~e~~G~Vv~~   78 (333)
T 1v3u_A            3 EFMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SK---RLKEGAVMMGQQVARVVES   78 (333)
T ss_dssp             -CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TT---TCCTTSBCCCCEEEEEEEE
T ss_pred             cccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cC---cCCCCcccccceEEEEEec
Confidence            34678999999875  4    2389999999999999999999999999988732 11   2246789999999999995


Q ss_pred             CCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        86 G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                        ++++|++||||+..                                                    |+|+||++++.+
T Consensus        79 --~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~  104 (333)
T 1v3u_A           79 --KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGK  104 (333)
T ss_dssp             --SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESST
T ss_pred             --CCCCCCCCCEEEec----------------------------------------------------CceEEEEEechH
Confidence              57889999999632                                                    289999999999


Q ss_pred             cEEEcCCC----CChhh-hcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          166 HVVKVDPT----VPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       166 ~~~~iP~~----ls~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      +++++|++    +++.+ +|++.+++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|++++++++++
T Consensus       105 ~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~  183 (333)
T 1v3u_A          105 GLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKI  183 (333)
T ss_dssp             TEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHH
T ss_pred             HeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            99999997    88887 47888999999998878889999999999998 9999999999999999 899999999999


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEEe
Q 023561          240 EIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       240 ~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      +.++++|++.++|+.+  .+++.+.+.+.+++++|.++.
T Consensus       184 ~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~d~vi~  220 (333)
T 1v3u_A          184 AYLKQIGFDAAFNYKT--VNSLEEALKKASPDGYDCYFD  220 (333)
T ss_dssp             HHHHHTTCSEEEETTS--CSCHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHhcCCcEEEecCC--HHHHHHHHHHHhCCCCeEEEE
Confidence            9999999999988754  256788888887767655543

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=1.2e-32  Score=275.12  Aligned_cols=202  Identities=21%  Similarity=0.220  Sum_probs=177.3

Q ss_pred             eeeeecCCCCC--cEEEEeec--CCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           18 RAAIATAPGEP--LVIDEVIV--DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        18 ~a~~~~~~g~~--l~~~~~~~--p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      ..+.+..+|.+  |++++.+.  |+|+++||+|||+++|||++|++++.|.++   .|.++|||++|+|+++|+++++|+
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCC
Confidence            34556666654  88887764  578999999999999999999999998765   356799999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||||+...                               +                   |+|+||++++...++++|++
T Consensus       288 vGDrV~~~~-------------------------------~-------------------G~~ae~~~v~~~~~~~iP~~  317 (795)
T 3slk_A          288 PGDRVMGMI-------------------------------P-------------------KAFGPLAVADHRMVTRIPAG  317 (795)
T ss_dssp             TTCEEEECC-------------------------------S-------------------SCSSSEEEEETTSEEECCTT
T ss_pred             CCCEEEEEe-------------------------------c-------------------CCCcCEEEeehHHEEECCCC
Confidence            999996421                               1                   38999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +++++||++++++.|+|+++.+..++++|++|||+|+ |++|++++|+||.+|+ +|+++++++ |.+.++ +|+++++|
T Consensus       318 ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~  394 (795)
T 3slk_A          318 WSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLAS  394 (795)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEEC
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheee
Confidence            9999999999999999998888899999999999997 9999999999999999 799998655 666665 99999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +++   .++.+.+++.|+| |+|.|+.
T Consensus       395 ~~~---~~~~~~i~~~t~g~GvDvVld  418 (795)
T 3slk_A          395 SRT---CDFEQQFLGATGGRGVDVVLN  418 (795)
T ss_dssp             SSS---STHHHHHHHHSCSSCCSEEEE
T ss_pred             cCC---hhHHHHHHHHcCCCCeEEEEE
Confidence            988   8999999999999 8876664

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.97  E-value=2.1e-30  Score=235.66  Aligned_cols=206  Identities=18%  Similarity=0.197  Sum_probs=167.8

Q ss_pred             ceeeeeee-----cCCCC-CcEEE--EeecCC-CCCCeEEEEeeeeecChhhhhhhhcCCCC----CCCCcccccceeEE
Q 023561           15 IQCRAAIA-----TAPGE-PLVID--EVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIGV   81 (280)
Q Consensus        15 ~~~~a~~~-----~~~g~-~l~~~--~~~~p~-~~~~eVlIkv~~~~i~~~D~~~~~g~~~~----~~~p~i~G~e~~G~   81 (280)
                      .+||+++.     .+++. .++++  +++.|. |+++||||||.++|+|+.|. .+.|....    ..+|.++|||++|+
T Consensus         3 ~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~   81 (345)
T 2j3h_A            3 ATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGY   81 (345)
T ss_dssp             EEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEE
T ss_pred             ccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecc
Confidence            34555544     44553 38888  889887 89999999999999888874 45554322    13689999999999


Q ss_pred             EEE--eCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeee
Q 023561           82 VES--VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY  159 (280)
Q Consensus        82 V~~--vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~  159 (280)
                      +++  +|+++++|++||||+..                                                    |+|+||
T Consensus        82 ~~~GvV~~~v~~~~vGdrV~~~----------------------------------------------------g~~aey  109 (345)
T 2j3h_A           82 GVSRIIESGHPDYKKGDLLWGI----------------------------------------------------VAWEEY  109 (345)
T ss_dssp             EEEEEEEECSTTCCTTCEEEEE----------------------------------------------------EESBSE
T ss_pred             eEEEEEecCCCCCCCCCEEEee----------------------------------------------------cCceeE
Confidence            999  99999999999999632                                                    389999


Q ss_pred             EEeeccc--EEEcCC---CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc
Q 023561          160 TVLDIAH--VVKVDP---TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       160 ~~~~~~~--~~~iP~---~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      ++++...  ++++|+   +++++ +|++++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|++++
T Consensus       110 ~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~  187 (345)
T 2j3h_A          110 SVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSA  187 (345)
T ss_dssp             EEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             EEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            9998876  999996   35555 67788899999998878889999999999998 9999999999999999 899999


Q ss_pred             CChhHHHHHH-HcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          234 VISEKFEIGK-RFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       234 ~~~~~~~~~~-~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +++++++.++ ++|++.++|+.+  .+++.+.+++.+++++|.++
T Consensus       188 ~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~d~vi  230 (345)
T 2j3h_A          188 GSKEKVDLLKTKFGFDDAFNYKE--ESDLTAALKRCFPNGIDIYF  230 (345)
T ss_dssp             SSHHHHHHHHHTSCCSEEEETTS--CSCSHHHHHHHCTTCEEEEE
T ss_pred             CCHHHHHHHHHHcCCceEEecCC--HHHHHHHHHHHhCCCCcEEE
Confidence            9999999998 699999998765  24677788888765775554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.90  E-value=2.1e-23  Score=228.09  Aligned_cols=187  Identities=19%  Similarity=0.088  Sum_probs=159.7

Q ss_pred             cEEEEeecCC-CC--CCeEEEEeeeeecChhhhhhhhcCCCCC-------CCCcccccceeEEEEEeCCCCCCCCCCCEE
Q 023561           29 LVIDEVIVDP-PN--SHEVRVRIICTSLCHSDVTFWKMKDFPA-------VFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (280)
Q Consensus        29 l~~~~~~~p~-~~--~~eVlIkv~~~~i~~~D~~~~~g~~~~~-------~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V   98 (280)
                      +.+++.+... +.  ++||+|||.++|+|+.|+.+..|..+..       ..|.++|+|++|+|.          +||+|
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEE
Confidence            5565554333 22  7899999999999999999999876431       245789999999873          69999


Q ss_pred             EecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCChhh
Q 023561           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR  178 (280)
Q Consensus        99 ~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls~~~  178 (280)
                      +..                              ..+|                   +|+||+++|...++++|+++++++
T Consensus      1614 ~g~------------------------------~~~G-------------------~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGM------------------------------VPAE-------------------GLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEE------------------------------CSSC-------------------CSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEe------------------------------ecCC-------------------ceeeEEEcccceEEEeCCCCCHHH
Confidence            632                              1223                   899999999999999999999999


Q ss_pred             hcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH----cCCcEEEcC
Q 023561          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNS  253 (280)
Q Consensus       179 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~----~Ga~~vi~~  253 (280)
                      ||++++++.|+|+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++.+++|++++++    +|+++++++
T Consensus      1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~ 1723 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANS 1723 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEES
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecC
Confidence            99999999999998888889999999999987 9999999999999999 89999999999999986    789999999


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      ++   .++.+.+++.++| |+|.|..
T Consensus      1724 ~~---~~~~~~i~~~t~g~GvDvVld 1746 (2512)
T 2vz8_A         1724 RD---TSFEQHVLRHTAGKGVDLVLN 1746 (2512)
T ss_dssp             SS---SHHHHHHHHTTTSCCEEEEEE
T ss_pred             CC---HHHHHHHHHhcCCCCceEEEE
Confidence            87   8899999999998 7766553

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.60  E-value=4.3e-15  Score=124.07  Aligned_cols=110  Identities=23%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             ccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       165 ~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++++++|+++++++||++++++.|||+++.+..++++|++|+|+|+ |++|++++++++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999999999999999999999998777789999999999996 9999999999999999 8999999999999999


Q ss_pred             HcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          244 RFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       244 ~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      ++|++.++|..+   .++.+.+.+.+.+ ++|.++.
T Consensus        81 ~~g~~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~  113 (198)
T 1pqw_A           81 RLGVEYVGDSRS---VDFADEILELTDGYGVDVVLN  113 (198)
T ss_dssp             TTCCSEEEETTC---STHHHHHHHHTTTCCEEEEEE
T ss_pred             HcCCCEEeeCCc---HHHHHHHHHHhCCCCCeEEEE
Confidence            999999888876   7788888888876 6765543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.50  E-value=1.9e-07  Score=79.53  Aligned_cols=116  Identities=12%  Similarity=0.068  Sum_probs=77.4

Q ss_pred             CCCCCEEEecC-------CCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec
Q 023561           92 VVEGDVVIPHF-------LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (280)
Q Consensus        92 ~~~Gd~V~~~~-------~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  164 (280)
                      +++||+|++.+       ...|+.|.+|+.|..+.|+....      . .|                   +..      .
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~------~-~G-------------------~~~------~   51 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK------P-EG-------------------VKI------N   51 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC------C-TT-------------------EEE------T
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC------C-CC-------------------CEE------E
Confidence            89999999988       67788888888888777765321      0 11                   222      2


Q ss_pred             ccEEEcCCCCChhhhcc-----cchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          165 AHVVKVDPTVPPNRACL-----LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       165 ~~~~~iP~~ls~~~aa~-----l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      ..+++.|+.....+.+.     +..+...+ . +.....++++++||.+|+| .|..+..+++. +. ++++++.+++.+
T Consensus        52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~  126 (248)
T 2yvl_A           52 GFEVYRPTLEEIILLGFERKTQIIYPKDSF-Y-IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFY  126 (248)
T ss_dssp             TEEEECCCHHHHHHHTSCCSSCCCCHHHHH-H-HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHH
T ss_pred             EEEEeCCCHHHHHHhcCcCCCCcccchhHH-H-HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHH
Confidence            33344443222221111     11122222 2 5677788999999999988 58888899988 65 999999999888


Q ss_pred             HHHHH
Q 023561          240 EIGKR  244 (280)
Q Consensus       240 ~~~~~  244 (280)
                      +.+++
T Consensus       127 ~~a~~  131 (248)
T 2yvl_A          127 KTAQK  131 (248)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.32  E-value=2e-09  Score=99.67  Aligned_cols=138  Identities=16%  Similarity=0.172  Sum_probs=103.0

Q ss_pred             CCcccccceeEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeec
Q 023561           70 FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHH  149 (280)
Q Consensus        70 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~  149 (280)
                      .-...|++.++.|..+|.+++++.+|+.+++.+-..                             +           +..
T Consensus        73 ~~~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~-----------------------------~-----------~~~  112 (404)
T 1gpj_A           73 AWVKRGSEAVRHLFRVASGLESMMVGEQEILRQVKK-----------------------------A-----------YDR  112 (404)
T ss_dssp             CEEEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH-----------------------------H-----------HHH
T ss_pred             eeeecCchHhhhheeeccCCCCCcCCcchhHHHHHH-----------------------------H-----------HHH
Confidence            345679999999999999999999999874321000                             0           000


Q ss_pred             ccccceeeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHc---CCCCCCEEEEECccHHHHHHHHHHHHcCC
Q 023561          150 FVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGA  226 (280)
Q Consensus       150 ~~~~g~~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~---~~~~g~~VlI~G~g~~G~~a~~la~~~g~  226 (280)
                      ....|++++|+..+...++.+|+.++...++.. .+.+++|.++....   ...+|++|+|+|+|.+|.++++.++..|+
T Consensus       113 ~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~  191 (404)
T 1gpj_A          113 AARLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGV  191 (404)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCC
T ss_pred             HHHcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCC
Confidence            111246788888888889999998887776653 36677777543322   23589999999999999999999999999


Q ss_pred             CeEEEEcCChhHH-HHHHHcCCc
Q 023561          227 TRIIGVDVISEKF-EIGKRFGVT  248 (280)
Q Consensus       227 ~~vi~~~~~~~~~-~~~~~~Ga~  248 (280)
                      ++|++++++.+|. ++++++|++
T Consensus       192 ~~V~v~~r~~~ra~~la~~~g~~  214 (404)
T 1gpj_A          192 RAVLVANRTYERAVELARDLGGE  214 (404)
T ss_dssp             SEEEEECSSHHHHHHHHHHHTCE
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCc
Confidence            8899999999886 677777764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.39  E-value=0.00027  Score=64.02  Aligned_cols=46  Identities=26%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +++|+|+|+|++|+++++.++.+|+ +|++++++++|++.++++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~  212 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS  212 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc
Confidence            4899999999999999999999999 999999999999888776543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.20  E-value=0.00064  Score=62.53  Aligned_cols=49  Identities=27%  Similarity=0.297  Sum_probs=45.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      ++++|+|+|+|.+|+.++++++.+|+ +|++++++.++++.++++|++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~  219 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFL  219 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEE
Confidence            57899999999999999999999999 89999999999999999998644

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.16  E-value=0.00064  Score=62.07  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=45.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      ++++|+|+|+|.+|+.++++++.+|+ +|+++++++++++.++++|++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~  219 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFI  219 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE
Confidence            68999999999999999999999999 79999999999999999998754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.14  E-value=0.0015  Score=61.52  Aligned_cols=62  Identities=21%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHc-CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          186 VSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       186 ~~ta~~~l~~~~-~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ..+.|.++.+.. ...+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++++.++++|++
T Consensus       257 ~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~  319 (494)
T 3ce6_A          257 RHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD  319 (494)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             hhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE
Confidence            345555433322 26789999999999999999999999999 999999999998888888874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.04  E-value=0.0011  Score=60.37  Aligned_cols=48  Identities=27%  Similarity=0.378  Sum_probs=44.7

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++++.++++|++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~  230 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQW  230 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE
Confidence            67899999999999999999999999 8999999999999999998853

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.95  E-value=0.0015  Score=59.85  Aligned_cols=47  Identities=26%  Similarity=0.340  Sum_probs=44.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++++++.++++.++++|++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~  235 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAK  235 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCc
Confidence            57899999999999999999999999 899999999999999999986

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.93  E-value=0.0025  Score=57.95  Aligned_cols=47  Identities=26%  Similarity=0.283  Sum_probs=42.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCc
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      +|++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~  214 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGR  214 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCe
Confidence            57999999999999999999999999 89999999999888876 6764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.93  E-value=0.005  Score=49.65  Aligned_cols=49  Identities=22%  Similarity=0.379  Sum_probs=43.6

Q ss_pred             CCEEEEECccHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      +++|+|+|.|.+|...++.++.. |. .|+++++++++.+.+++.|+..+.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~   88 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVIS   88 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEE
Confidence            67899999999999999999998 99 899999999999999888886544

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.86  E-value=0.0019  Score=50.79  Aligned_cols=54  Identities=24%  Similarity=0.300  Sum_probs=43.7

Q ss_pred             HcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCcEE
Q 023561          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF  250 (280)
Q Consensus       196 ~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~~v  250 (280)
                      .....++++|+|+|+|.+|...++.++..|. .|+++++++++.+.++ +.|+..+
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~   67 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTV   67 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEE
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEE
Confidence            3445678999999999999999999999998 8999999999888777 6776533

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.75  E-value=0.0051  Score=55.72  Aligned_cols=48  Identities=29%  Similarity=0.367  Sum_probs=42.7

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcE
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~  249 (280)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++++.+++ +|++.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~  213 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRV  213 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceE
Confidence            46899999999999999999999999 89999999999888766 77653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.73  E-value=0.0059  Score=44.91  Aligned_cols=49  Identities=18%  Similarity=0.260  Sum_probs=41.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      .+.+|+|+|+|.+|...++.+...|..+|+++++++++.+.++..+...
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~   52 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVAT   52 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcE
Confidence            3568999999999999999999999338999999999988888777654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.59  E-value=0.013  Score=45.24  Aligned_cols=50  Identities=12%  Similarity=0.274  Sum_probs=44.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      ..++|+|+|.|.+|...++.++..|. .|+++++++++.+.+++.|...+.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~   55 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVL   55 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEE
Confidence            35789999999999999999999999 899999999999999888876443

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.58  E-value=0.0017  Score=56.08  Aligned_cols=51  Identities=22%  Similarity=0.283  Sum_probs=41.9

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....+.++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+++
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  155 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  155 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            55677889999999999876 888888998854 3489999999988877765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.48  E-value=0.016  Score=44.42  Aligned_cols=48  Identities=19%  Similarity=0.342  Sum_probs=42.2

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      .++++|+|+|.+|...++.+...|. .|+++++++++.+.+++.|...+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~   53 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAV   53 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEE
Confidence            4689999999999999999999999 89999999999999888886533

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.47  E-value=0.017  Score=50.11  Aligned_cols=47  Identities=28%  Similarity=0.190  Sum_probs=39.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      -.|++++|+|+ |++|...+..+...|+ +|+++++++++.+.+.+ ++.
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~   62 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAG   62 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC
Confidence            46789999998 9999999988888999 89999999888776654 544

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.40  E-value=0.01  Score=51.58  Aligned_cols=48  Identities=25%  Similarity=0.236  Sum_probs=41.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCc
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~  248 (280)
                      -+|+++||.|+ +++|.+.+..+...|+ +|+++++++++++.+. ++|..
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~   76 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGG   76 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTT
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCC
Confidence            46899999998 9999999999999999 8999999998877654 46653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.35  E-value=0.015  Score=48.91  Aligned_cols=49  Identities=24%  Similarity=0.187  Sum_probs=40.3

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      ...++++|||+|+ |++|...+..+...|+ +|+++++++++++.+.+ +..
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   60 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKD   60 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCS
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhcc
Confidence            3467899999998 9999999988888999 89999999888776643 443

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.16  E-value=0.027  Score=48.42  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=38.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.+ ++.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~   76 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGN   76 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            5789999998 9999999988888999 89999999888766543 555

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.16  E-value=0.002  Score=50.06  Aligned_cols=61  Identities=10%  Similarity=0.069  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHHcCCc
Q 023561          186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVT  248 (280)
Q Consensus       186 ~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~Ga~  248 (280)
                      +++++.++ +......+++|+|+|+|.+|...++.++..|++ |+++++++++.+. ++++|.+
T Consensus         6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~~   67 (144)
T 3oj0_A            6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEYE   67 (144)
T ss_dssp             CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTCE
T ss_pred             ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCCc
Confidence            34455543 333334489999999999999999988889994 9999999888765 5567753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.15  E-value=0.01  Score=45.14  Aligned_cols=47  Identities=19%  Similarity=0.379  Sum_probs=39.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ++++|+|+|+|.+|...++.++..|. .|+++++++++.+.+++.|..
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~   51 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATH   51 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCE
Confidence            35679999999999999999999998 788999988887777666654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.14  E-value=0.004  Score=53.19  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=39.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHHcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .++.+||.+|.|. |..+..+++.. +. .|+++|.+++.++.+++.+.
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~  130 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYP  130 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCC
Confidence            6788999999887 88888999886 56 89999999999999887553

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.12  E-value=0.014  Score=51.07  Aligned_cols=48  Identities=25%  Similarity=0.355  Sum_probs=42.2

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      -.|++|+|+|.|.+|..+++.++.+|+ +|++++++.++.+.++++|+.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  200 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME  200 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            468999999999999999999999999 899999998887766667754

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.10  E-value=0.019  Score=49.13  Aligned_cols=46  Identities=13%  Similarity=0.085  Sum_probs=39.8

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      .++|||+|+ +++|.+.+..+...|+ +|+++++++++.+.+.+.+..
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~   48 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPN   48 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTT
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCC
Confidence            378999998 9999999999999999 899999999988877765543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.02  E-value=0.015  Score=51.50  Aligned_cols=51  Identities=24%  Similarity=0.367  Sum_probs=41.1

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....+.++++||-+|.|. |..++.+++..|. .+|++++.+++..+.+++
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            44566889999999999866 7788888888764 489999999988777765

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.01  E-value=0.031  Score=50.37  Aligned_cols=49  Identities=31%  Similarity=0.396  Sum_probs=42.8

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      -+|++|.|.|.|.+|..+++.++.+|+ +|++.|.+.++.++.+++|++.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~  221 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA  221 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEE
Confidence            578999999999999999999999999 8889998887766777788743

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.97  E-value=0.026  Score=48.46  Aligned_cols=47  Identities=19%  Similarity=0.388  Sum_probs=39.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~Ga~  248 (280)
                      +|+++||.|+ +++|.+.+..+...|+ +|+.+++++++++.+    ++.|..
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~   57 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKE   57 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence            5899999998 9999999988889999 899999998876554    345654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.93  E-value=0.03  Score=51.60  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=44.4

Q ss_pred             HHHHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          191 GAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       191 ~~l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      .++.+..+ .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|
T Consensus       208 ~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G  263 (435)
T 3gvp_A          208 DGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDG  263 (435)
T ss_dssp             HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT
T ss_pred             HHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcC
Confidence            33444433 4589999999999999999999999999 8999999887766665555

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=95.87  E-value=0.033  Score=47.09  Aligned_cols=47  Identities=28%  Similarity=0.358  Sum_probs=39.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~  248 (280)
                      .|+++||+|+ +++|...++.+...|+ +|+++++++++.+.+. +++..
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   53 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKK   53 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCc
Confidence            5789999998 9999999999999999 8999999988766654 35654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=95.87  E-value=0.026  Score=47.97  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=39.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      -.|+++||+|+ +++|...++.+...|+ +|+++++++++.+.+.+ ++.
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   54 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGP   54 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            46789999998 9999999998888999 89999999888766654 554

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.86  E-value=0.031  Score=52.32  Aligned_cols=54  Identities=24%  Similarity=0.332  Sum_probs=44.9

Q ss_pred             HHHHcCC-CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          193 AWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       193 l~~~~~~-~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +.+.... -.|++++|+|+|++|...++.++..|+ +|+++++++.+...+...|+
T Consensus       255 i~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~  309 (488)
T 3ond_A          255 LMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGL  309 (488)
T ss_dssp             HHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCC
Confidence            4444443 579999999999999999999999999 89999999888777766664

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.85  E-value=0.047  Score=46.84  Aligned_cols=48  Identities=31%  Similarity=0.445  Sum_probs=39.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HHcCCcE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~Ga~~  249 (280)
                      +|++++|.|+ +++|.+.++.+...|+ +|+++++++++++..    ++.|.+.
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~   60 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDA   60 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcE
Confidence            6899999998 9999999999999999 899999998775543    3456543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.84  E-value=0.03  Score=46.59  Aligned_cols=46  Identities=15%  Similarity=0.141  Sum_probs=40.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+++|||+|+ |.+|...+..+...|. +|+++++++++.+.+.+.++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~   66 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGA   66 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCC
Confidence            4789999998 9999999998888999 89999999998888776666

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=95.83  E-value=0.011  Score=50.37  Aligned_cols=42  Identities=21%  Similarity=0.334  Sum_probs=37.0

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +-+|+++||+|+ +++|.+.+..+...|+ +|+++++++++++.
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~   50 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHA   50 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhh
Confidence            357999999998 9999999999999999 89999998877654

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.74  E-value=0.046  Score=47.13  Aligned_cols=46  Identities=24%  Similarity=0.284  Sum_probs=38.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      .++++||+|+ +++|...+..+...|+ +|+++++++++++.+.+ ++.
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~   51 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGG   51 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCC
Confidence            4789999998 9999999998889999 89999999888766654 554

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.73  E-value=0.025  Score=49.48  Aligned_cols=48  Identities=25%  Similarity=0.323  Sum_probs=41.9

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      -.|++|+|+|.|.+|..+++.++.+|+ +|++.+++.++.+.++++|+.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~  202 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV  202 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            468999999999999999999999999 899999998887766666653

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=95.71  E-value=0.043  Score=46.59  Aligned_cols=41  Identities=27%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAA   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999988888999 899999988766544

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.70  E-value=0.038  Score=46.80  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=36.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ..++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   48 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVH   48 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            35789999998 9999999888888899 8999999988766554

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=95.69  E-value=0.066  Score=45.42  Aligned_cols=47  Identities=28%  Similarity=0.263  Sum_probs=38.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      -.++++||+|+ |++|...++.+...|+ +|++++++.++.+.+. +++.
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   54 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGP   54 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            35789999998 9999999988888999 8999999888766554 3554

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.69  E-value=0.035  Score=46.79  Aligned_cols=46  Identities=26%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+.+ +|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   51 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGA   51 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC
Confidence            4689999998 9999999988888999 89999999887765543 564

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=95.66  E-value=0.12  Score=43.10  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   48 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLV   48 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999998 9999999998888999 8999999887776544

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.65  E-value=0.041  Score=46.10  Aligned_cols=42  Identities=12%  Similarity=0.172  Sum_probs=36.3

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++++||+|+ |++|...+..+...|+ +|+++++++++++.+.+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            578999998 9999999988888999 89999999888766543

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.65  E-value=0.03  Score=47.46  Aligned_cols=49  Identities=29%  Similarity=0.351  Sum_probs=38.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+..++++. .++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~   54 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFF   54 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEE
Confidence            4789999998 9999999988888999 89999988777444444543 444

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=95.59  E-value=0.052  Score=46.02  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=35.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   45 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVV   45 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999998 9999999988888999 899999988776544

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=95.55  E-value=0.069  Score=44.98  Aligned_cols=46  Identities=30%  Similarity=0.321  Sum_probs=37.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh-hHHH-HHHHcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE-IGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~-~~~~-~~~~~Ga  247 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++ ++.+ .+++.|.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   54 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGR   54 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCC
Confidence            5789999998 9999999988888999 899998887 6554 3445564

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=95.51  E-value=0.022  Score=48.72  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=39.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHHHcCCcE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~--~~~~~~~~~Ga~~  249 (280)
                      +|+++||.|+ +++|.+.+..+...|+ +|+++++++  +..+.+++.|...
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~   58 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNA   58 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcE
Confidence            5899999998 9999999999999999 888888864  4566677777643

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=95.48  E-value=0.044  Score=45.53  Aligned_cols=41  Identities=20%  Similarity=0.135  Sum_probs=35.1

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +++||.|+ |++|...+..+...|+ +|+++++++++++.+.+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~   43 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTN   43 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            46899998 9999999998889999 79999999988777654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=95.45  E-value=0.045  Score=47.17  Aligned_cols=48  Identities=23%  Similarity=0.149  Sum_probs=39.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCc
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++.+.+.+ ++..
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   74 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSK   74 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCc
Confidence            35789999998 9999999988888999 89999999887665543 5543

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.41  E-value=0.048  Score=46.71  Aligned_cols=43  Identities=23%  Similarity=0.230  Sum_probs=36.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +++++||+|+ |++|...+..+...|+ +|+++++++++.+.+.+
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~   51 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQ   51 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            5789999998 9999999998888999 89999999887765543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=95.40  E-value=0.073  Score=45.11  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=35.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDC   49 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999988888999 899999988765543

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=95.40  E-value=0.068  Score=45.17  Aligned_cols=46  Identities=20%  Similarity=0.174  Sum_probs=37.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+. +++.
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   52 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGE   52 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC
Confidence            4789999998 9999999988888999 8999999988766553 3554

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=95.40  E-value=0.063  Score=45.40  Aligned_cols=46  Identities=24%  Similarity=0.225  Sum_probs=38.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++++.+.+ ++.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   55 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGD   55 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCC
Confidence            5789999998 9999999988888999 89999999888776543 554

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=95.40  E-value=0.076  Score=45.43  Aligned_cols=41  Identities=24%  Similarity=0.309  Sum_probs=35.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDEC   61 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999998888999 899999988766543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=95.38  E-value=0.052  Score=45.97  Aligned_cols=41  Identities=22%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++++.+
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   47 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPL   47 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999998888999 899999988775544

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.38  E-value=0.037  Score=47.38  Aligned_cols=48  Identities=23%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCc
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~  248 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++++.+. ++|..
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~   74 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKD   74 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCc
Confidence            35789999998 9999999999989999 8999999888766554 46654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.37  E-value=0.062  Score=46.77  Aligned_cols=44  Identities=23%  Similarity=0.202  Sum_probs=38.2

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .-.+++++|+|+|++|.+++..+...|+++|+++.++.+|.+.+
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            35688999999999999999988899998899999998876644

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.29  E-value=0.087  Score=44.99  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=35.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   61 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEA   61 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            45789999998 9999999988888999 899999988766543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.28  E-value=0.13  Score=38.58  Aligned_cols=46  Identities=20%  Similarity=0.366  Sum_probs=38.1

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCc
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      +.+|+|+|+|.+|...++.+...|. .|+++++++++.+.+++ +|..
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~   50 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL   50 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcE
Confidence            3579999999999999998888898 89999999888877664 5664

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.27  E-value=0.057  Score=45.41  Aligned_cols=44  Identities=23%  Similarity=0.352  Sum_probs=36.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+.++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~   49 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKY   49 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhc
Confidence            4789999998 9999999988888999 899999988776554433

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.25  E-value=0.074  Score=45.34  Aligned_cols=41  Identities=24%  Similarity=0.254  Sum_probs=35.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+..
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   50 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNET   50 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999988888999 899999988765443

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=95.24  E-value=0.068  Score=44.69  Aligned_cols=43  Identities=23%  Similarity=0.272  Sum_probs=35.3

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      ++++||+|+ |++|...+..+...|+ +|+++++++++  ..+++|+
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~   45 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGA   45 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCc
Confidence            578999998 9999999998888999 89999988776  3344564

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.24  E-value=0.12  Score=43.88  Aligned_cols=43  Identities=23%  Similarity=0.243  Sum_probs=36.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.++++||+|+ +++|...+..+...|+ +|+++++++++.+.+.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   52 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVA   52 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHH
Confidence            46799999998 9999999988888999 8999999987765543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=95.23  E-value=0.044  Score=46.92  Aligned_cols=47  Identities=23%  Similarity=0.319  Sum_probs=38.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++++.+. ++|.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   57 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGR   57 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCC
Confidence            35789999998 9999999988889999 8999999887766554 3554

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=95.22  E-value=0.16  Score=42.23  Aligned_cols=43  Identities=16%  Similarity=0.281  Sum_probs=36.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~   49 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAK   49 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            5789999998 9999999998888999 89999998877665543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=95.18  E-value=0.039  Score=46.83  Aligned_cols=42  Identities=29%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   47 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAK   47 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999998 9999999998888999 8999999988776654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.16  E-value=0.089  Score=48.55  Aligned_cols=48  Identities=25%  Similarity=0.307  Sum_probs=41.3

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~  255 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGY  255 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCC
Confidence            3478999999999999999999999999 89999998877766655554

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.11  E-value=0.067  Score=45.63  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG  246 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G  246 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+.+ ++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   51 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE   51 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence            5789999998 9999999988888999 89999999887766543 44

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.11  E-value=0.059  Score=46.54  Aligned_cols=43  Identities=19%  Similarity=0.145  Sum_probs=36.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .+++++||+|+ +++|...+..+...|+ +|++++++.++.+.+.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVA   69 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            35789999998 9999999988888999 8999999987766554

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.11  E-value=0.059  Score=45.34  Aligned_cols=42  Identities=29%  Similarity=0.304  Sum_probs=36.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   50 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVA   50 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            5789999998 9999999998888999 8999999987765543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.10  E-value=0.066  Score=45.56  Aligned_cols=41  Identities=34%  Similarity=0.334  Sum_probs=35.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   53 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEAS   53 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999988888999 899999988776544

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=95.10  E-value=0.081  Score=44.75  Aligned_cols=46  Identities=33%  Similarity=0.424  Sum_probs=38.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+. ++|.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   51 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGD   51 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            4789999998 9999999998888999 8999999988766554 3553

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.06  E-value=0.09  Score=47.47  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=41.6

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH-HHHcCCc
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVT  248 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~Ga~  248 (280)
                      --.|++|+|.|.|.+|..+++.+...|+ +|++++++.++++. ++++|++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            3578999999999999999999999999 78899999888764 4456763

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.04  E-value=0.037  Score=48.23  Aligned_cols=42  Identities=17%  Similarity=0.124  Sum_probs=35.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   81 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSV   81 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            35789999998 9999999998889999 899999988765544

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.04  E-value=0.056  Score=46.54  Aligned_cols=42  Identities=24%  Similarity=0.245  Sum_probs=35.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVV   72 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999988888999 899999988765544

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.03  E-value=0.15  Score=43.56  Aligned_cols=41  Identities=22%  Similarity=0.205  Sum_probs=35.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEET   71 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHH
Confidence            5789999998 9999999988888999 899999988766543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.02  E-value=0.044  Score=46.69  Aligned_cols=42  Identities=21%  Similarity=0.215  Sum_probs=36.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   50 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDAC   50 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999998889999 899999998776544

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.01  E-value=0.11  Score=48.06  Aligned_cols=49  Identities=22%  Similarity=0.218  Sum_probs=41.1

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      ..-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~  291 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGF  291 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTC
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCc
Confidence            35689999999999999999999999999 89999988876555544453

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=95.01  E-value=0.065  Score=44.44  Aligned_cols=43  Identities=21%  Similarity=0.139  Sum_probs=36.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+.+
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~   47 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAA   47 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            4678999998 9999999988888999 89999998887765543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.99  E-value=0.077  Score=44.69  Aligned_cols=41  Identities=27%  Similarity=0.223  Sum_probs=35.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   47 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRAL   47 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4789999998 9999999988888999 899999988776544

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.99  E-value=0.045  Score=47.21  Aligned_cols=47  Identities=23%  Similarity=0.400  Sum_probs=38.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++.+.+. +++.
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~   75 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGC   75 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC
Confidence            35789999998 9999999988888999 8999999988766654 3554

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=94.98  E-value=0.044  Score=46.29  Aligned_cols=44  Identities=25%  Similarity=0.266  Sum_probs=37.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      -.++++||+|+ +++|...++.+...|+ +|+++++++++.+.+.+
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~   51 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISD   51 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            35789999998 9999999998889999 89999999887766543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.96  E-value=0.055  Score=46.35  Aligned_cols=41  Identities=24%  Similarity=0.307  Sum_probs=35.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...++.+...|+ +|++++++.++.+.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   72 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   72 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHH
Confidence            4689999998 9999999988888999 899999987766544

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=94.95  E-value=0.14  Score=43.92  Aligned_cols=42  Identities=29%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.|+++||.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQT   66 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999988889999 899999988775544

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=94.94  E-value=0.068  Score=45.59  Aligned_cols=41  Identities=22%  Similarity=0.304  Sum_probs=35.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||.|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999998889999 899999988776544

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=94.93  E-value=0.044  Score=46.42  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      -.++++||+|+ +++|...+..+...|+ +|+++++++++.+... +++.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   53 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGA   53 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC-----------
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            35789999998 9999999998888999 8999998877665443 3443

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.92  E-value=0.043  Score=46.64  Aligned_cols=43  Identities=28%  Similarity=0.294  Sum_probs=36.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.++++||+|+ |++|...+..+...|+ +|++++++.++++.+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   70 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVE   70 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            45789999998 9999999988888899 8999999988765543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=94.91  E-value=0.15  Score=43.98  Aligned_cols=41  Identities=15%  Similarity=0.121  Sum_probs=35.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~   66 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKAT   66 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999998 9999999988888999 899999988766543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=94.90  E-value=0.078  Score=45.52  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=34.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.|+++||.|+ +++|...++.+...|+ +|+++++++...+..+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   72 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVAD   72 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHH
Confidence            35789999998 9999999988888999 8888887655444443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=94.89  E-value=0.066  Score=46.19  Aligned_cols=43  Identities=19%  Similarity=0.119  Sum_probs=36.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.++++||+|+ +++|...+..+...|+ +|+++++++++++.+.
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   49 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELT   49 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            35789999998 9999999988888999 8999999988766554

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=94.88  E-value=0.047  Score=46.81  Aligned_cols=42  Identities=24%  Similarity=0.337  Sum_probs=35.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+.
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   45 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIA   45 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            4689999998 9999999988888999 8999999987765543

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=94.87  E-value=0.054  Score=46.54  Aligned_cols=46  Identities=15%  Similarity=0.138  Sum_probs=37.2

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG  246 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  246 (280)
                      ..++++||+|+ |++|...+..+...|+ +|+++++++++++.+. +++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~   73 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIG   73 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC
Confidence            45789999998 9999999988888999 8999999988766654 354

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=94.87  E-value=0.092  Score=44.42  Aligned_cols=41  Identities=24%  Similarity=0.144  Sum_probs=34.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   54 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNEC   54 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5689999998 9999999988888999 899999987765543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.86  E-value=0.16  Score=42.71  Aligned_cols=40  Identities=23%  Similarity=0.136  Sum_probs=34.0

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      ...++++||+|+ |++|...+..+...|+ +|++++++++..
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~   56 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL   56 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHH
Confidence            456899999998 9999999988888999 899999887443

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.83  E-value=0.083  Score=45.42  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=34.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ..++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   64 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAA   64 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999988888999 899999998776554

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=94.83  E-value=0.072  Score=45.70  Aligned_cols=40  Identities=15%  Similarity=0.003  Sum_probs=33.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+++++++++.+.
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~   46 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAF   46 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHH
Confidence            5899999998 9999999988888999 88999887765443

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.83  E-value=0.062  Score=45.43  Aligned_cols=42  Identities=21%  Similarity=0.169  Sum_probs=36.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQV   52 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999988888999 899999998776554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.82  E-value=0.1  Score=47.92  Aligned_cols=50  Identities=24%  Similarity=0.420  Sum_probs=43.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      .+.+|+|+|.|.+|...++.++..|. .|++++.++++.+.+++.|...++
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~   52 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFY   52 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEE
Confidence            34679999999999999999999999 899999999999999998876443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.82  E-value=0.087  Score=45.22  Aligned_cols=41  Identities=20%  Similarity=0.217  Sum_probs=35.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   62 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTT   62 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4789999998 9999999988888999 899999988765543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=94.81  E-value=0.093  Score=46.88  Aligned_cols=38  Identities=34%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      -.|+++||+|+ +++|...+..+...|+ +|+++++++++
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~   81 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQP   81 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSC
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhh
Confidence            35799999998 9999999988888999 89999887653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.80  E-value=0.11  Score=44.60  Aligned_cols=46  Identities=15%  Similarity=0.110  Sum_probs=38.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG  246 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G  246 (280)
                      -++++++|+|+|++|.+++..+...|. +|++++++.+|.+.+ ++++
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~  163 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFA  163 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTG
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhh
Confidence            367899999999999999999999996 899999998886544 4444

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.80  E-value=0.054  Score=46.13  Aligned_cols=42  Identities=24%  Similarity=0.203  Sum_probs=35.7

Q ss_pred             CCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+++++++++++.+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~   49 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELE   49 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6899999997 5  899999998889999 8999999887665554

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.80  E-value=0.12  Score=43.74  Aligned_cols=41  Identities=37%  Similarity=0.465  Sum_probs=35.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEA   47 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4789999998 9999999988888999 899999988776543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.77  E-value=0.062  Score=45.56  Aligned_cols=42  Identities=26%  Similarity=0.275  Sum_probs=35.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   52 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAV   52 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999888888899 899999988766544

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.76  E-value=0.052  Score=46.84  Aligned_cols=42  Identities=12%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .|+++||+|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   74 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAA   74 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5789999998 9999999988888999 8999999987765543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.75  E-value=0.041  Score=48.31  Aligned_cols=49  Identities=18%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ..++++++++||.+|.|+.+..++.+++..|+ +|++++.+++.++.+++
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~  164 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRK  164 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHH
Confidence            35688999999999998767777888888888 89999999998888775

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=94.75  E-value=0.07  Score=44.34  Aligned_cols=41  Identities=22%  Similarity=0.097  Sum_probs=35.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++||+|+ |++|...++.+...|+ +|++++++.++.+.+
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   42 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKI   42 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3678999998 9999999999999999 899999998776554

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=94.75  E-value=0.19  Score=42.35  Aligned_cols=40  Identities=18%  Similarity=0.073  Sum_probs=34.3

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   42 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAV   42 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 9999999998888999 899999988765543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.74  E-value=0.095  Score=43.87  Aligned_cols=42  Identities=21%  Similarity=0.258  Sum_probs=35.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .+++++|+|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~   46 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFE   46 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4789999998 9999999888888999 8999999887665543

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=94.66  E-value=0.053  Score=46.39  Aligned_cols=42  Identities=24%  Similarity=0.221  Sum_probs=35.2

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ..++++||+|+ |++|...+..+...|+ +|++++++.++++.+
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   56 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKAL   56 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHh
Confidence            34689999998 9999999998888999 899999987776544

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.63  E-value=0.11  Score=43.70  Aligned_cols=46  Identities=33%  Similarity=0.315  Sum_probs=37.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~Ga  247 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+ ++++.
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   58 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   58 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCC
Confidence            5789999998 9999999998888999 899999887765544 34554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.63  E-value=0.073  Score=44.78  Aligned_cols=51  Identities=20%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++++||-+|+|. |..+..+++..+ ..++++++.+++..+.+++
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  136 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWE  136 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH
Confidence            55677889999999999876 888888888853 4489999999988877765

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=94.62  E-value=0.12  Score=43.78  Aligned_cols=43  Identities=21%  Similarity=0.197  Sum_probs=36.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~   54 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVA   54 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            5789999998 9999999988888999 89999999887765543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.62  E-value=0.068  Score=45.96  Aligned_cols=42  Identities=31%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.|+++||+|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAV   73 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            35789999998 9999999988888999 899999887654443

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=94.62  E-value=0.044  Score=46.75  Aligned_cols=47  Identities=19%  Similarity=0.171  Sum_probs=36.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~-~~~~~~~Ga~  248 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++ .+.+++.++.
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   74 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAV   74 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCe
Confidence            4689999998 9999999988888999 78888887765 3444556653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=94.62  E-value=0.12  Score=42.46  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=33.7

Q ss_pred             CEEEEECc-cHHHHHHHHHHH-HcCCCeEEEEcCChh-HHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVISE-KFEIGK  243 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~-~~g~~~vi~~~~~~~-~~~~~~  243 (280)
                      ++|||+|+ |.+|...++.+. ..|+ +|++++++++ +.+.+.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~   48 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEI   48 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhc
Confidence            57999998 999999888777 8999 8999999988 766553

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=94.61  E-value=0.11  Score=43.85  Aligned_cols=42  Identities=19%  Similarity=0.145  Sum_probs=35.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   48 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETV   48 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHH
Confidence            4689999998 9999999988888999 8999999887766543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=94.59  E-value=0.084  Score=45.37  Aligned_cols=41  Identities=24%  Similarity=0.266  Sum_probs=35.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADT   69 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4789999998 9999999988888999 899999988776544

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=94.58  E-value=0.03  Score=47.91  Aligned_cols=51  Identities=22%  Similarity=0.277  Sum_probs=41.3

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            4566788999999999987 5788888888753 3489999999988877765

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.58  E-value=0.12  Score=45.62  Aligned_cols=43  Identities=23%  Similarity=0.217  Sum_probs=36.6

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC---hhHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~---~~~~~~~  242 (280)
                      -.+++++|+|+|++|.+++..+...|+++|+++.|+   .+|.+.+
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~l  197 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT  197 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHH
Confidence            468999999999999999999999999889999998   6665543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=94.50  E-value=0.082  Score=44.30  Aligned_cols=46  Identities=24%  Similarity=0.422  Sum_probs=37.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga  247 (280)
                      .+++++|+|+ |++|...+..+...|+ +|+++++++++.+.+. +++.
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   57 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGA   57 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcc
Confidence            5789999998 9999999988888999 8999999887765543 3443

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=94.49  E-value=0.14  Score=43.77  Aligned_cols=35  Identities=29%  Similarity=0.198  Sum_probs=31.2

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -.++++||+|+ +++|...++.+...|+ +|++++++
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            45789999998 9999999999999999 89999886

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.48  E-value=0.063  Score=44.93  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=36.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.+++++|+|+ |++|...+..+...|+ +|+++++++++++.+.
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   55 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVS   55 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHH
Confidence            35789999998 9999999988888999 8999999987765543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.47  E-value=0.083  Score=44.97  Aligned_cols=41  Identities=24%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   48 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAA   48 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999988888999 899999998776554

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.46  E-value=0.08  Score=46.11  Aligned_cols=43  Identities=33%  Similarity=0.305  Sum_probs=36.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++++.+.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   72 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAV   72 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            46789999998 9999999988888999 8999999988766543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.45  E-value=0.094  Score=45.54  Aligned_cols=52  Identities=21%  Similarity=0.175  Sum_probs=38.3

Q ss_pred             CCCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----HcCCcEEEc
Q 023561          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVN  252 (280)
Q Consensus       200 ~~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~----~~Ga~~vi~  252 (280)
                      -.++++||+|+ |  ++|...+..+...|+ +|++++++++..+.++    +.|...++.
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~   86 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVP   86 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEE
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEE
Confidence            35789999998 5  999998888888999 8999998875444333    345444443

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=94.44  E-value=0.11  Score=43.62  Aligned_cols=71  Identities=11%  Similarity=-0.023  Sum_probs=46.2

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-c--CChhHHHHHHH-c-CCcEEEcCCCCCCccHHHHHHHhcCCCceE
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-D--VISEKFEIGKR-F-GVTEFVNSKNCGDKSVSQVLLSIYDLPLLT  275 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~--~~~~~~~~~~~-~-Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~  275 (280)
                      ++++||+|+ |++|...++.+...|+ +|+++ +  +++++.+.+.+ + |. .+.+.++  ...+.+.+.+.. |++|.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~--v~~~~~~~~~~~-g~iD~   75 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGT-IALAEQK--PERLVDATLQHG-EAIDT   75 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTE-EECCCCC--GGGHHHHHGGGS-SCEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCC-cccCHHH--HHHHHHHHHHHc-CCCCE
Confidence            468999998 9999999998888999 89998 6  88877765543 4 43 3333332  234444444432 35555


Q ss_pred             EE
Q 023561          276 IS  277 (280)
Q Consensus       276 v~  277 (280)
                      ++
T Consensus        76 lv   77 (244)
T 1zmo_A           76 IV   77 (244)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=94.43  E-value=0.13  Score=44.28  Aligned_cols=41  Identities=29%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI  241 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~  241 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++ ++++.+.
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~   65 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRT   65 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            35789999998 9999999998889999 8999988 5454443

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=94.42  E-value=0.14  Score=43.22  Aligned_cols=43  Identities=19%  Similarity=0.285  Sum_probs=35.3

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG  246 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G  246 (280)
                      ++++|.|+ |++|...+..+...|+ +|+++++++++++.+.+ ++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   45 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELG   45 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence            46899998 9999999988888999 89999999887765543 44

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=94.42  E-value=0.11  Score=44.33  Aligned_cols=46  Identities=22%  Similarity=0.274  Sum_probs=37.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      .++++||+|+ |++|...++.+...|+ +|++++++.++.+.+.+ ++.
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   51 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPD   51 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTT
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccC
Confidence            4689999998 9999999998888999 89999998877665543 543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.39  E-value=0.15  Score=45.06  Aligned_cols=43  Identities=26%  Similarity=0.220  Sum_probs=36.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC---hhHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~---~~~~~~~  242 (280)
                      -.+++++|+|+|++|.+++..+...|+++|+++.|+   .+|.+.+
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~l  191 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAF  191 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHH
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHH
Confidence            467899999999999999999999999889999999   5555443

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=94.38  E-value=0.15  Score=46.85  Aligned_cols=41  Identities=24%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             HcCC-CCCCEEEEECc-cHHHHHHHHHHHH-cCCCeEEEEcCChh
Q 023561          196 TANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISE  237 (280)
Q Consensus       196 ~~~~-~~g~~VlI~G~-g~~G~~a~~la~~-~g~~~vi~~~~~~~  237 (280)
                      ...+ +.++++||+|+ +++|++.+..+.. .|+ +|++++++.+
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~   97 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKP   97 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCC
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCch
Confidence            3445 45789999998 8999998777777 999 8888877643

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=94.38  E-value=0.17  Score=42.86  Aligned_cols=41  Identities=32%  Similarity=0.374  Sum_probs=35.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKA   47 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999999889999 899999988776544

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.36  E-value=0.18  Score=44.03  Aligned_cols=48  Identities=19%  Similarity=0.059  Sum_probs=39.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~Ga  247 (280)
                      -.+++++|+|+|++|.+++..+...|+++|+++.++.+|.+.+ ++++.
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~  187 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDE  187 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            4678999999999999999999999988899999998886444 44544

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.35  E-value=0.25  Score=42.27  Aligned_cols=36  Identities=28%  Similarity=0.265  Sum_probs=31.3

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      ..-.++++||+|+ +++|...++.+...|+ +|+++++
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r   47 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDI   47 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEec
Confidence            3456899999998 9999999998889999 8998887

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.34  E-value=0.065  Score=46.25  Aligned_cols=42  Identities=14%  Similarity=0.046  Sum_probs=34.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ..++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~   52 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEA   52 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            45789999998 9999999888888999 899999998775443

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.34  E-value=0.068  Score=46.00  Aligned_cols=41  Identities=22%  Similarity=0.257  Sum_probs=35.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4689999998 9999999988888999 899999998776654

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.33  E-value=0.098  Score=45.24  Aligned_cols=42  Identities=12%  Similarity=0.016  Sum_probs=37.0

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+|++|.+++..+...|+.+|+++.++.+|.+.+
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~l  160 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALAL  160 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            678999999999999999888889987999999998886654

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=94.32  E-value=0.13  Score=43.48  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=33.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .++++||+|+ +++|...+..+...|+ +|+++++..++  ..++++.
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~--~~~~~~~   52 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGED--VVADLGD   52 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHH--HHHHTCT
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHH--HHHhcCC
Confidence            4689999998 9999999988888899 88888875443  3344554

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=94.31  E-value=0.16  Score=44.06  Aligned_cols=35  Identities=31%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -.++++||+|+ +++|...+..+...|+ +|++++++
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            35789999998 9999999988889999 88988876

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.31  E-value=0.082  Score=46.52  Aligned_cols=42  Identities=14%  Similarity=0.263  Sum_probs=36.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~   48 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKA   48 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            35789999998 9999999988888999 899999998876554

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.30  E-value=0.14  Score=44.38  Aligned_cols=43  Identities=19%  Similarity=0.092  Sum_probs=37.1

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.+++++|+|+|++|.+.+..+...|+.+|+++.++.+|.+.+
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  166 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQL  166 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHH
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHH
Confidence            3688999999999999999888889987899999998876554

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=94.29  E-value=0.13  Score=44.42  Aligned_cols=36  Identities=33%  Similarity=0.258  Sum_probs=31.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|+++||+|+ |++|...+..+...|+ +|++++++++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   82 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEE   82 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            5789999998 9999999998888999 8888888764

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=94.29  E-value=0.09  Score=43.97  Aligned_cols=42  Identities=29%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++++||+|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   47 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAA   47 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999998 9999999988888999 8999999887765543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.27  E-value=0.095  Score=44.97  Aligned_cols=41  Identities=27%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   51 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGA   51 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999988888999 899999988765543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.27  E-value=0.11  Score=45.10  Aligned_cols=55  Identities=22%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-c-----------CCcEEEcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-----------GVTEFVNSK  254 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~-----------Ga~~vi~~~  254 (280)
                      -.+++++|+|+|++|.+++..+...|+++|+++.|+.+|.+.+.+ +           .++-+||..
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~l~~DivInaT  186 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNLKGDVIINCT  186 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTTCCCSEEEECS
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHhccCCEEEECC
Confidence            468899999999999999999999999889999999888755432 2           567788764

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.26  E-value=0.11  Score=43.26  Aligned_cols=44  Identities=25%  Similarity=0.173  Sum_probs=37.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcC--CCeEEEEcCChhHHHHHHHc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g--~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .++++||+|+ |++|...++.+...|  + +|++++++.++.+.++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~   48 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSI   48 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhc
Confidence            3578999998 999999998888889  7 899999998887776665

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=94.26  E-value=0.14  Score=42.64  Aligned_cols=41  Identities=24%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAV   47 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4789999998 9999999988888999 899999988766544

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=94.23  E-value=0.16  Score=42.95  Aligned_cols=41  Identities=27%  Similarity=0.282  Sum_probs=34.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~-~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++ .+.+
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   45 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKV   45 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHH
Confidence            4689999998 9999999988888999 89999988776 4443

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=94.21  E-value=0.1  Score=44.32  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=35.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   48 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMA   48 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999998 9999999988888999 8999999887766543

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=94.20  E-value=0.14  Score=43.70  Aligned_cols=41  Identities=20%  Similarity=0.052  Sum_probs=34.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++ ++++.+.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   52 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRL   52 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHH
Confidence            4689999998 9999999988888999 8999998 77765544

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=94.15  E-value=0.17  Score=43.23  Aligned_cols=35  Identities=34%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -.|+++||+|+ +++|...+..+...|+ +|++++++
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   46 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLC   46 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecc
Confidence            35789999998 9999999988888999 89999876

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=94.15  E-value=0.22  Score=42.76  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=34.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   84 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSV   84 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence            4689999998 9999999988888898 788888887765543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.13  E-value=0.11  Score=43.68  Aligned_cols=40  Identities=25%  Similarity=0.254  Sum_probs=34.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   52 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATK   52 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            5789999998 9999999988888999 89999998776543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.13  E-value=0.18  Score=43.02  Aligned_cols=35  Identities=26%  Similarity=0.164  Sum_probs=31.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -.++++||+|+ +++|...+..+...|+ +|++++++
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~   43 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDIC   43 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccc
Confidence            35789999998 9999999998889999 89998876

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=94.13  E-value=0.15  Score=42.93  Aligned_cols=40  Identities=13%  Similarity=0.037  Sum_probs=33.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHH-cCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~  241 (280)
                      .++++||+|+ |++|...+..+.. .|+ +|++++++.++.+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~   44 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQA   44 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHH
Confidence            5789999998 9999998887777 899 89999998766544

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.04  E-value=0.2  Score=42.41  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=33.1

Q ss_pred             CCCEEEEECc-cH--HHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~--~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |.  +|...+..+...|+ +|++++++++..+.+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSV   49 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHH
Confidence            5789999997 66  99998888888899 899998876544443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.04  E-value=0.24  Score=42.76  Aligned_cols=42  Identities=19%  Similarity=0.198  Sum_probs=35.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++++|+|+ |++|.+.+..+...|+ +|++++++.++.+.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  159 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA  159 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHH
Confidence            46899999995 9999999999999999 699999987776544

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=94.02  E-value=0.12  Score=43.08  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=34.4

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++++|+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   42 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEET   42 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999998 9999999988888998 899999988776554

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=93.99  E-value=0.093  Score=44.37  Aligned_cols=43  Identities=12%  Similarity=0.074  Sum_probs=34.2

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcC---CCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCG---ATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g---~~~vi~~~~~~~~~~~~~  243 (280)
                      .+++++||+|+ |++|...+..+...|   + +|++++++.++.+.++
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~   65 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELE   65 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHH
Confidence            45689999998 999999998888888   7 8999998876544333

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=93.97  E-value=0.33  Score=45.73  Aligned_cols=38  Identities=29%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +++++++||+|+ |++|...+..+...|+++|+.+.++.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~  294 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRG  294 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            567899999998 99999988888888997788888875

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=93.96  E-value=0.15  Score=43.24  Aligned_cols=41  Identities=15%  Similarity=0.007  Sum_probs=33.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++ ++++++.+.+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~   45 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALET   45 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            5789999998 9999999998889999 77775 8887665544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.95  E-value=0.19  Score=43.39  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=38.0

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      +++++|+|+|++|.+++..+...| .+|+++.|+.+|.+.+.++|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~~la~~~  161 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLDFFQRLG  161 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHCC
Confidence            899999999999999999999999 59999999988876654544

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=93.93  E-value=0.16  Score=42.93  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ++++||+|+ |++|...+..+...|+ +|+++++++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   38 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQE   38 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcch
Confidence            678999998 9999999888888899 89999988766

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=93.92  E-value=0.14  Score=42.96  Aligned_cols=40  Identities=23%  Similarity=0.214  Sum_probs=33.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~  241 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+++++ ++++.+.
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   44 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANE   44 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            4689999998 9999999988888999 8888887 7666543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=93.92  E-value=0.2  Score=43.25  Aligned_cols=43  Identities=30%  Similarity=0.186  Sum_probs=33.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCC--eEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGAT--RIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~--~vi~~~~~~~~~~~~~  243 (280)
                      .++++||+|+ +++|...+..+...|+.  +|+.+++++++++.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~   77 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELK   77 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHH
Confidence            4789999998 99999887766655542  7899999988766554

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.92  E-value=0.17  Score=43.69  Aligned_cols=49  Identities=14%  Similarity=0.188  Sum_probs=39.4

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcC
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG  246 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G  246 (280)
                      ....+++++|+|+|+++.+++..+...|+++|+++.|+.+|.+.+ ++++
T Consensus       115 ~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~  164 (271)
T 1npy_A          115 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG  164 (271)
T ss_dssp             TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            444678999999999999999888999988899999998775444 3444

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=93.90  E-value=0.18  Score=42.33  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~--~~~~~~~~  244 (280)
                      .+++++|+|+ |++|...+..+...|+++|+++++++  +..+.+++
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~   50 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA   50 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHH
Confidence            4789999998 99999999888889995588888775  34444443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.89  E-value=0.13  Score=43.70  Aligned_cols=40  Identities=33%  Similarity=0.266  Sum_probs=34.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   46 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQ   46 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            5789999998 9999999998888999 89999998876554

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.89  E-value=0.097  Score=44.26  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=35.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   53 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDR   53 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            35789999998 9999999988888999 89999998876544

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.89  E-value=0.11  Score=44.49  Aligned_cols=42  Identities=17%  Similarity=0.076  Sum_probs=35.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ +++|...++.+...|+ +|++++++.++.+..
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   67 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTA   67 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999998888999 899999987765443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.89  E-value=0.088  Score=45.09  Aligned_cols=42  Identities=24%  Similarity=0.163  Sum_probs=35.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.++++||+|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999998 9999999988888999 899999988766544

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.88  E-value=0.26  Score=41.74  Aligned_cols=39  Identities=26%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~  240 (280)
                      .++++||+|+ +++|...+..+...|+ +|+++ ++++++.+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~   47 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAA   47 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            5789999998 9999999988888999 77777 55555443

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.88  E-value=0.2  Score=43.90  Aligned_cols=36  Identities=36%  Similarity=0.411  Sum_probs=31.3

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .-.++++||+|+ +++|...+..+...|+ +|++++++
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            346789999998 9999999988888999 89999876

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.85  E-value=0.11  Score=43.96  Aligned_cols=43  Identities=26%  Similarity=0.319  Sum_probs=35.7

Q ss_pred             CCCCEEEEECc-c-HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g-~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.++++||+|+ | ++|...+..+...|+ +|+++++++++.+.+.
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   64 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETR   64 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHH
Confidence            35789999998 7 799999988888899 8999999987765543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=93.85  E-value=0.14  Score=43.81  Aligned_cols=36  Identities=33%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .++++||+|+ +++|...+..+...|+ +|++++++.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   41 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAV   41 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccch
Confidence            5789999998 9999999988888999 8999988764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.83  E-value=0.14  Score=44.37  Aligned_cols=41  Identities=22%  Similarity=0.231  Sum_probs=33.4

Q ss_pred             CCCCCEEEEECc-cH--HHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          199 VEVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~--~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      .-.++++||+|+ |.  +|...+..+...|+ +|++++++++..+
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~   71 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKK   71 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence            356899999997 66  99999988888999 8999988865433

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.81  E-value=0.18  Score=43.27  Aligned_cols=35  Identities=29%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -.++++||+|+ +++|...+..+...|+ +|++++++
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            45799999998 9999999998889999 89988776

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.77  E-value=0.27  Score=42.24  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=33.2

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFE  240 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~  240 (280)
                      ...++++||+|+ |++|...+..+...|+ +|+++++ ++++.+
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~   68 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVA   68 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHH
Confidence            346789999998 9999999998889999 7888874 555544

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.75  E-value=0.14  Score=44.32  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+++++|+|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   58 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999998 9999999988888999 899999988766543

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.74  E-value=0.099  Score=44.85  Aligned_cols=41  Identities=29%  Similarity=0.216  Sum_probs=35.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   46 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEET   46 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999988888999 899999998776554

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=93.73  E-value=0.2  Score=42.90  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .++++||+|+ |++|...+..+...|+ +|++++++.++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   65 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTE   65 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            4789999998 9999999998888999 88888877543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=93.72  E-value=0.064  Score=43.80  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            38999999999999999999999 899998653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=93.69  E-value=0.28  Score=42.40  Aligned_cols=34  Identities=21%  Similarity=0.080  Sum_probs=30.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .++++||+|+ +++|...+..+...|+ +|++++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789999998 9999999998889999 88888876

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=93.68  E-value=0.18  Score=44.13  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=31.1

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .-.++++||+|+ +++|...+..+...|+ +|++++++
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            346789999998 9999999998889999 88888765

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.68  E-value=0.1  Score=44.55  Aligned_cols=41  Identities=24%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   46 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEET   46 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999998 9999999988888999 899999988776654

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=93.68  E-value=0.21  Score=41.99  Aligned_cols=36  Identities=28%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .++++||+|+ |++|...+..+...|+ +|++++++++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~   39 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP   39 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            4689999998 9999999988888999 8999988765

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=93.61  E-value=0.18  Score=43.41  Aligned_cols=36  Identities=36%  Similarity=0.381  Sum_probs=31.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .++++||+|+ +++|...+..+...|+ +|++++++++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChh
Confidence            5789999998 9999999988888999 8999988765

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.61  E-value=0.13  Score=41.99  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|||+|+ |.+|...+..+...|. +|+++++++++.+.+...++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~   45 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATV   45 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTS
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCc
Confidence            5899998 9999999999988998 89999999888776544444

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=93.60  E-value=0.22  Score=41.99  Aligned_cols=42  Identities=17%  Similarity=0.073  Sum_probs=34.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHH---cCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARL---CGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~---~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .++++||+|+ |++|...+..+..   .|+ +|+++++++++.+.+.
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~   50 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHH
Confidence            4678999998 9999998877776   899 8999999887765543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=93.57  E-value=0.3  Score=41.36  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             CCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .++++||+|+   |++|...+..+...|+ +|+++++++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~   45 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   45 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH
Confidence            5789999986   6999999988888999 899998876

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=93.57  E-value=0.1  Score=43.71  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=34.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   50 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH   50 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH
Confidence            4689999998 9999999988888899 89999998876543

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=93.55  E-value=0.48  Score=44.27  Aligned_cols=40  Identities=23%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+.+++++||+|+ |++|...+..+...|+++|+.++++..
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            3567899999998 999999888887889967888888753

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=93.54  E-value=0.11  Score=44.48  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      ....++++||+|+ +++|...+..+...|+ +|+++++++++.
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~   51 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSD   51 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--C
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhc
Confidence            4567899999998 9999999988888999 899998876544

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=93.52  E-value=0.15  Score=43.51  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=32.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI  241 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~  241 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++ ++++.+.
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~   68 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADE   68 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            35789999998 9999999998888999 7877776 5544433

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=93.52  E-value=0.24  Score=42.71  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=34.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|++++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            5789999998 9999999998888999 899998 887765544

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.51  E-value=0.17  Score=43.12  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=32.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFE  240 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~  240 (280)
                      -.++++||+|+ |++|...+..+...|+ +|+++++ ++++.+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~   68 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVAD   68 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            35789999998 9999999888888999 8888888 444433

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=93.49  E-value=0.24  Score=42.20  Aligned_cols=41  Identities=20%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEI  241 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~~  241 (280)
                      ..++++||+|+ +++|...+..+...|+ +|+++ .+++++.+.
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~   67 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEE   67 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            45799999998 9999999888888899 67666 555554443

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.49  E-value=0.11  Score=45.06  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=35.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEET   66 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999998 9999999988888999 899999988776544

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=93.48  E-value=0.21  Score=42.12  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcC--CCeEEEEcCChhHHHHHHH-cCC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g--~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      ++++||+|+ +++|...+..+...|  . .|+.+++++++++.+.+ +|.
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~   50 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGD   50 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCC
Confidence            678999998 999998876666654  5 88889999887766654 454

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.46  E-value=0.23  Score=42.19  Aligned_cols=36  Identities=17%  Similarity=0.081  Sum_probs=30.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -.++++||+|+ +++|...+..+...|+ +|+++++..
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~   45 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQA   45 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCG
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCc
Confidence            35789999998 9999999988888999 788876543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=93.45  E-value=0.08  Score=44.75  Aligned_cols=39  Identities=15%  Similarity=0.030  Sum_probs=33.1

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +++||+|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   41 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDEL   41 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHH
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            47899998 9999999998888999 899999887765544

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.45  E-value=0.23  Score=41.92  Aligned_cols=40  Identities=23%  Similarity=0.154  Sum_probs=33.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~  241 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++ ++++.+.
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~   61 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEE   61 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHH
Confidence            5789999998 9999999988888999 8888887 6665443

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=93.40  E-value=0.34  Score=45.77  Aligned_cols=38  Identities=16%  Similarity=0.064  Sum_probs=31.7

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCC
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVI  235 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~  235 (280)
                      .+++++++||+|+ |++|...+..+...|++.++.+ +++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3567899999998 9999998888888899667777 776

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.40  E-value=0.24  Score=42.34  Aligned_cols=34  Identities=35%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      -.++++||+|+ +++|...+..+...|+ +|+++++
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r   43 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDI   43 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEec
Confidence            45789999998 9999999998889999 8998887

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=93.39  E-value=0.17  Score=44.50  Aligned_cols=45  Identities=33%  Similarity=0.406  Sum_probs=38.0

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.+++.|+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  185 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNG  185 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCc
Confidence            46899999999999999999999999 89999988766 44555554

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.35  E-value=0.18  Score=42.76  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=34.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   56 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKV   56 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHH
Confidence            5789999998 9999999988888999 899999887765443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.29  E-value=0.21  Score=42.93  Aligned_cols=43  Identities=16%  Similarity=0.048  Sum_probs=36.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.+++++|+|+|++|.+.+..+...|. +|+++.++.+|.+.+.
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~~~a~~l~  159 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELA  159 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            367899999999999999988888996 9999999988765543

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=93.27  E-value=0.61  Score=43.78  Aligned_cols=47  Identities=26%  Similarity=0.236  Sum_probs=35.8

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh-------hHHHHHHHcCCcE
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-------EKFEIGKRFGVTE  249 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~-------~~~~~~~~~Ga~~  249 (280)
                      +++||+|+ |++|...+..+...|+++++.+.++.       +..+.+++.|...
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v  294 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRV  294 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEE
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeE
Confidence            89999998 99999988888888997888888753       2233445577643

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.26  E-value=0.29  Score=41.77  Aligned_cols=40  Identities=30%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFE  240 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~  240 (280)
                      -.++++||+|+ +++|...+..+...|+ +|+++++ ++++.+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~   70 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQ   70 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            46789999998 9999999988888999 7777744 444433

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=93.24  E-value=0.23  Score=41.80  Aligned_cols=39  Identities=15%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      ..++++||+|+ |++|...+..+...|+ +|+++++++++.
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~   59 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPN   59 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccc
Confidence            44789999998 9999999998889999 899999887653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=93.15  E-value=0.27  Score=42.10  Aligned_cols=52  Identities=21%  Similarity=0.255  Sum_probs=38.1

Q ss_pred             CCCCCEEEEECc-cH--HHHHHHHHHHHcCCCeEEEEcCCh--hHHHHHHH-cCCcEEE
Q 023561          199 VEVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVIS--EKFEIGKR-FGVTEFV  251 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~--~G~~a~~la~~~g~~~vi~~~~~~--~~~~~~~~-~Ga~~vi  251 (280)
                      .-.++++||+|+ |.  +|...+..+...|+ +|++++++.  ++.+.+.+ .+-..++
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~   80 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVL   80 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEE
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEE
Confidence            346789999996 55  99998888888999 899998876  55555544 4433444

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.12  E-value=0.35  Score=40.87  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             CCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .++++||+|+   |++|...++.+...|+ +|++++++++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   45 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAER   45 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence            4789999986   6999998888888899 8999988865

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=93.10  E-value=0.21  Score=40.35  Aligned_cols=82  Identities=17%  Similarity=0.283  Sum_probs=51.8

Q ss_pred             eeeeeEE-eecccEEEcCCCCChhhhcccchhhHHHHHHHHHHc--CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEE
Q 023561          155 SFSEYTV-LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  231 (280)
Q Consensus       155 ~~~~~~~-~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~--~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~  231 (280)
                      .|.+|.. .+....+.+++++++..+..   .....   +....  .++++++||-+|+|. |..+..+++ .+...|++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~---~~~~l~~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~   88 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH---QTTQL---AMLGIERAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLA   88 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH---HHHHH---HHHHHHHHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC---ccHHH---HHHHHHHhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEE
Confidence            4677766 67778888888877666422   11111   11222  257889999999865 666777666 46569999


Q ss_pred             EcCChhHHHHHHH
Q 023561          232 VDVISEKFEIGKR  244 (280)
Q Consensus       232 ~~~~~~~~~~~~~  244 (280)
                      +|.+++.++.+++
T Consensus        89 vD~s~~~~~~a~~  101 (205)
T 3grz_A           89 TDISDESMTAAEE  101 (205)
T ss_dssp             EESCHHHHHHHHH
T ss_pred             EECCHHHHHHHHH
Confidence            9999988777765

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=93.10  E-value=0.2  Score=41.83  Aligned_cols=43  Identities=12%  Similarity=0.200  Sum_probs=33.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .++++||+|+ |++|...++.+.. |. .|+++++++++.+.+.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~   47 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEI   47 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhh
Confidence            4689999998 9999987776654 77 899999998888777663

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=93.08  E-value=0.15  Score=43.72  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=34.7

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++||+|+ |++|...+..+...|+ +|+++++++++++.+.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~   62 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALA   62 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            78999998 9999999988888999 8999999988766554

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.94  E-value=0.18  Score=40.92  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +|||+|+ |.+|...+..+...|. +|+++++++++.+.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~   40 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQT   40 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhc
Confidence            6899998 9999999999999998 899999998877654

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.88  E-value=0.14  Score=42.84  Aligned_cols=40  Identities=28%  Similarity=0.240  Sum_probs=33.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC-hhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~-~~~~~~  241 (280)
                      .++++||+|+ |++|...+..+...|+ +|++++++ +++.+.
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   47 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDE   47 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHH
Confidence            4689999998 9999999988888999 89999887 655443

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=92.87  E-value=0.17  Score=42.58  Aligned_cols=40  Identities=20%  Similarity=0.147  Sum_probs=33.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~  241 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++ ++++.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   47 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANS   47 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHH
Confidence            4689999998 9999999888888899 8999988 6665443

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=92.86  E-value=0.14  Score=42.27  Aligned_cols=35  Identities=14%  Similarity=0.082  Sum_probs=29.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .++++||+|+ +++|...++.+...|+ +|+++++++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~   40 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQT   40 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCc
Confidence            4688999998 9999999988888899 888887653

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.83  E-value=0.14  Score=44.00  Aligned_cols=40  Identities=25%  Similarity=0.163  Sum_probs=33.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh-hHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~-~~~~~  241 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++ ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            4789999998 9999999988888999 899998887 65543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.83  E-value=0.21  Score=42.46  Aligned_cols=44  Identities=25%  Similarity=0.340  Sum_probs=37.7

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|||+|+|.+|...+..+...|. +|+++++++++.+.++..++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~   49 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGA   49 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTE
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCC
Confidence            689999999999999998888898 89999999988877665443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.83  E-value=0.29  Score=41.67  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKF  239 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~  239 (280)
                      -.++++||+|+ +++|...+..+...|+ +|+++++ ++++.
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~   56 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDA   56 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHH
Confidence            45789999998 9999999998889999 7777654 44443

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=92.81  E-value=0.32  Score=40.81  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .++++||+|+ |++|...+..+...|+ +|++++++.++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~   50 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAAD   50 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchh
Confidence            4678999998 9999999988888999 89999885443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.80  E-value=0.22  Score=43.28  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=36.2

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ..++++|||+|+ |.+|...+..+...|. +|++++++.++.+.+.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~   52 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHH
Confidence            346789999998 9999999988888898 8999998877655443

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=92.78  E-value=0.44  Score=43.53  Aligned_cols=41  Identities=27%  Similarity=0.401  Sum_probs=31.6

Q ss_pred             HHcCC-CCCCEEEEECc-cHHHHHHHHHHHH-cCCCeEEEEcCCh
Q 023561          195 RTANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVIS  236 (280)
Q Consensus       195 ~~~~~-~~g~~VlI~G~-g~~G~~a~~la~~-~g~~~vi~~~~~~  236 (280)
                      ....+ ..++++||+|+ +++|++.+..+.. .|+ +|++++++.
T Consensus        39 ~~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~   82 (405)
T 3zu3_A           39 TEGPIANGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFER   82 (405)
T ss_dssp             HHCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCC
T ss_pred             hcCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCc
Confidence            34455 55788899998 8999988777777 899 888887653

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=92.77  E-value=0.21  Score=42.52  Aligned_cols=42  Identities=24%  Similarity=0.084  Sum_probs=33.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~~~  242 (280)
                      ..++++||+|+ |++|...+..+...|+ +|+++ .+++++.+.+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~   67 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAV   67 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHH
Confidence            45789999998 9999999999989999 66665 7776655543

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=92.74  E-value=0.21  Score=43.99  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++.++
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~   38 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGH-RVYASMRD   38 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCc
Confidence            3678999998 9999999999999999 88887654

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=92.73  E-value=0.099  Score=44.86  Aligned_cols=36  Identities=17%  Similarity=0.087  Sum_probs=32.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +|+++||.|+ +++|.+.++.+...|+ +|++++++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~   46 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARP   46 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCch
Confidence            6899999998 9999999999999999 8999988643

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=92.70  E-value=0.12  Score=43.86  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~   58 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPP   58 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhh
Confidence            4689999998 9999999998888999 888888876543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=92.64  E-value=0.18  Score=44.53  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=35.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~~~~~~~  242 (280)
                      .++++||+|+ |++|...+..+...|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            5789999998 9999999999889999 899988 887766544

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=92.59  E-value=0.37  Score=42.36  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~   41 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDL   41 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            5789999998 9999999988888999 8888653

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=92.50  E-value=0.23  Score=42.16  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   44 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG   44 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc
Confidence            4689999998 9999999998888999 89988887654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=92.49  E-value=0.4  Score=41.76  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+.+|||+|+ |.+|...++.+...|. +|++++++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   40 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVN   40 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCc
Confidence            4579999998 9999999998888999 8999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.48  E-value=0.27  Score=37.98  Aligned_cols=41  Identities=5%  Similarity=0.124  Sum_probs=33.3

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC-hhHHHHHH
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~-~~~~~~~~  243 (280)
                      .++++|+|+|.+|...++.+...|. .|++++++ +++.+.++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~   44 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLE   44 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHH
Confidence            4678999999999999999999998 78999986 45554443

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.46  E-value=0.34  Score=40.86  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          198 NVEVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       198 ~~~~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      ...+++++||+|+   +++|...+..+...|+ +|+++++++...+.
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~   55 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDR   55 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHH
Confidence            4567899999984   6999999888888999 89999887544333

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=92.45  E-value=0.18  Score=42.43  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .++++||+|+ |++|...+..+...|+ +|++++++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~   42 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFT   42 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchh
Confidence            4789999998 9999999998888999 8999888765

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=92.37  E-value=0.37  Score=41.05  Aligned_cols=36  Identities=22%  Similarity=0.223  Sum_probs=30.9

Q ss_pred             CCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .++++||+|+   |++|...+..+...|+ +|++++++++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~   43 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES   43 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            4789999986   6999999988888899 8999988764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.26  E-value=0.25  Score=42.07  Aligned_cols=40  Identities=30%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++.+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~   73 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEK   73 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4789999998 9999998888888899 89999887665443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=92.26  E-value=0.27  Score=43.47  Aligned_cols=44  Identities=23%  Similarity=0.074  Sum_probs=36.2

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.+++|||+|+ |.+|...++.+... |..+|+++++++.+.+.++
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~   64 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA   64 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHH
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHH
Confidence            45789999998 99999988887777 8768999999887766554

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=92.22  E-value=0.37  Score=38.74  Aligned_cols=39  Identities=21%  Similarity=0.165  Sum_probs=30.0

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +++||+|+ |++|...+..+...   +|+++++++++.+.+.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~   40 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAR   40 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHH
Confidence            46899998 99998877665544   89999998887765543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.22  E-value=0.14  Score=44.40  Aligned_cols=40  Identities=13%  Similarity=0.156  Sum_probs=35.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      -.+++++|+|+|++|.+++..+...|+++|+++.|+.+|.
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a  154 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRF  154 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGG
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence            4678999999999999999999999998899999987764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.22  E-value=0.29  Score=42.17  Aligned_cols=40  Identities=20%  Similarity=0.433  Sum_probs=35.1

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++|.|+|+|.+|...++.+...|. +|++.++++++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~   44 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAK   44 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence            589999999999999999999999 8999999988766554

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=92.21  E-value=0.18  Score=45.26  Aligned_cols=47  Identities=23%  Similarity=0.305  Sum_probs=39.2

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      -.|++|.|+|.|.+|...++.++.+|+ +|++.+++..+.+.+++.|+
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~  208 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGA  208 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCC
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCC
Confidence            357899999999999999999999999 89999987655555555554

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=92.21  E-value=0.23  Score=41.31  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~  240 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++ .+++++.+
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~   44 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLD   44 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHH
Confidence            4689999998 9999999988888999 78888 55655443

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=92.15  E-value=0.41  Score=41.59  Aligned_cols=36  Identities=28%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +++|||+|+ |.+|...+..+...|. +|+++++++++
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~   39 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGE   39 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCST
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence            578999998 9999999988888898 89999887654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.13  E-value=0.2  Score=42.83  Aligned_cols=41  Identities=24%  Similarity=0.173  Sum_probs=35.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .+ +++|+|+|++|.+++..+...|+++|+++.++.+|.+.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            46 999999999999999999999998899999998876543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.12  E-value=0.28  Score=41.66  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=32.1

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +.+|+|+|+|++|..++..+...|..+++++|.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            47899999999999999999999998999999886

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=92.12  E-value=0.22  Score=41.34  Aligned_cols=40  Identities=25%  Similarity=0.057  Sum_probs=32.7

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~~~  242 (280)
                      +++++|+|+ |++|...++.+...|+ +|+++ ++++++.+.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~   42 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEV   42 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            368999998 9999999988888999 78887 8887765543

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=92.11  E-value=0.28  Score=45.83  Aligned_cols=47  Identities=26%  Similarity=0.261  Sum_probs=39.4

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      --.|++|.|+|.|.+|..+++.++.+|+ +|++++++..+...+...|
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g  300 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEG  300 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTT
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcC
Confidence            4578999999999999999999999999 9999999887753333444

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=92.10  E-value=0.31  Score=42.93  Aligned_cols=46  Identities=24%  Similarity=0.411  Sum_probs=38.2

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      -.|++|.|+|.|.+|...++.++.+|+ +|++.+++.++. .+++.|+
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~  185 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINA  185 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCc
Confidence            357899999999999999999999999 899999887664 3445554

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=92.07  E-value=0.49  Score=37.91  Aligned_cols=31  Identities=29%  Similarity=0.430  Sum_probs=26.7

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ++||+|+ |++|...++.+. .|+ +|+++++++
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~   36 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHS   36 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSS
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCc
Confidence            7999998 999999888887 898 888888763

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=92.04  E-value=0.25  Score=40.94  Aligned_cols=40  Identities=23%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEE-EcCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~-~~~~~~~~~~~  242 (280)
                      |+++||+|+ |++|...++.+...|+ +|++ .++++++.+.+
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~   42 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEV   42 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            578999998 9999999998888999 7777 57877665443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=92.03  E-value=0.42  Score=38.49  Aligned_cols=51  Identities=14%  Similarity=0.134  Sum_probs=41.7

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++++||-+|+|. |..++.+++..+..+|+++|.+++.++.+++
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            45667889999999999875 7888888888644599999999988877764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=91.98  E-value=0.31  Score=39.73  Aligned_cols=49  Identities=20%  Similarity=0.218  Sum_probs=40.4

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....+.++++||-+|+|. |..++.+++. +. +|+++|.+++.++.+++
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Confidence            44566788999999999876 7888888887 66 89999999988877764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.94  E-value=0.68  Score=37.94  Aligned_cols=44  Identities=16%  Similarity=0.072  Sum_probs=37.5

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCc
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT  248 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~  248 (280)
                      +|+|+|+|.+|...++.+...|. .|+++++++++.+.+. +.|..
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~   46 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKAT   46 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCe
Confidence            48899999999999999999999 8999999999888764 46654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=91.92  E-value=0.28  Score=40.68  Aligned_cols=42  Identities=17%  Similarity=0.105  Sum_probs=33.9

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCC------eEEEEcCChhHHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~------~vi~~~~~~~~~~~~~  243 (280)
                      ++++||+|+ |++|...+..+...|+.      +|+++++++++.+.+.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~   50 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKIS   50 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHH
Confidence            578999998 99999988887778875      7888998887765543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=91.91  E-value=0.31  Score=43.40  Aligned_cols=45  Identities=42%  Similarity=0.632  Sum_probs=37.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.+++.|+
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence            57899999999999999999999999 89999987655 34445554

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=91.86  E-value=0.87  Score=45.28  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=37.9

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHH-HcCCCeEEEEcCCh---h----HHHHHHHcCCcE
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVIS---E----KFEIGKRFGVTE  249 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~-~~g~~~vi~~~~~~---~----~~~~~~~~Ga~~  249 (280)
                      +.+++++||.|+ |++|...++.+. ..|+++++.++++.   +    ..+.+++.|...
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v  586 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEV  586 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEE
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcE
Confidence            357899999998 999999887776 78997788888872   2    233445567743

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=91.84  E-value=0.29  Score=41.21  Aligned_cols=42  Identities=17%  Similarity=0.032  Sum_probs=32.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC-hhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~-~~~~~~~~  243 (280)
                      .+++++|+|+ |++|...++.+...|+ +|+++++. ++..+.++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~   49 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMK   49 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHH
Confidence            4589999998 9999999988888999 77777554 44444443

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=91.82  E-value=0.31  Score=40.29  Aligned_cols=40  Identities=20%  Similarity=0.078  Sum_probs=33.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHc--CCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~--g~~~vi~~~~~~~~~~~  241 (280)
                      .+++|||+|+ |.+|...++.+...  |. +|+++++++++.+.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~   45 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEK   45 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhh
Confidence            4678999998 99999999888888  77 89999988766543

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=91.79  E-value=0.49  Score=43.05  Aligned_cols=80  Identities=25%  Similarity=0.248  Sum_probs=47.0

Q ss_pred             CCCCCEEEEECc-cHHHHHH-HHHHHHcCCCeEEEEcCChh----------------HHHHHHHcCCc-EEEcCCCCCCc
Q 023561          199 VEVGSTVVIFGL-GSIGLAV-AEGARLCGATRIIGVDVISE----------------KFEIGKRFGVT-EFVNSKNCGDK  259 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a-~~la~~~g~~~vi~~~~~~~----------------~~~~~~~~Ga~-~vi~~~~~~~~  259 (280)
                      ...++++||+|+ +++|++. +.+|...|+ .++++....+                -.+.+++.|.. ..++.+-.+++
T Consensus        47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA-~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e  125 (401)
T 4ggo_A           47 AKAPKNVLVLGCSNGYGLASRITAAFGYGA-ATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDE  125 (401)
T ss_dssp             SCCCCEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHH
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHHhhCCC-CEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHH
Confidence            456799999998 9999974 556656788 6777655332                12455666764 34555542333


Q ss_pred             cHHHHHHHhc--CCCceEEEec
Q 023561          260 SVSQVLLSIY--DLPLLTISVS  279 (280)
Q Consensus       260 ~~~~~v~~~~--~gg~~~v~~~  279 (280)
                      ...+.+.+.-  -|++|.++.+
T Consensus       126 ~i~~vi~~i~~~~G~IDiLVhS  147 (401)
T 4ggo_A          126 IKAQVIEEAKKKGIKFDLIVYS  147 (401)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEe
Confidence            3333333322  2367666653

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=91.77  E-value=0.2  Score=41.84  Aligned_cols=38  Identities=18%  Similarity=0.380  Sum_probs=32.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ..++++||+|+ |++|...+..+...|+ +|+++++++++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   43 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENE   43 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhh
Confidence            45789999998 9999999998888999 89999887654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=91.76  E-value=1.3  Score=38.61  Aligned_cols=35  Identities=31%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++|||+|+ |.+|...+..+...|. +|+++++..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   59 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFS   59 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            3689999998 9999999998888998 899998853

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=91.76  E-value=0.32  Score=41.16  Aligned_cols=39  Identities=21%  Similarity=0.150  Sum_probs=30.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEE-EcCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~-~~~~~~~~~  240 (280)
                      .++++||+|+ |++|...+..+...|+ +|++ ..++.++.+
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~   65 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQ   65 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHH
Confidence            4689999998 9999999998888999 5644 556655443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=91.74  E-value=0.35  Score=40.74  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=40.2

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHH
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  244 (280)
                      ....+++|++||=+|+|. |..+..+|+..|. .+|++++.+++.++.+++
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~  120 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLT  120 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHH
T ss_pred             hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            456789999999999855 7788889998875 389999999988777764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.72  E-value=0.31  Score=43.29  Aligned_cols=45  Identities=31%  Similarity=0.479  Sum_probs=37.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++.++ +..+++|+
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCc
Confidence            56899999999999999999999999 89999988766 44444443

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.68  E-value=0.54  Score=40.57  Aligned_cols=41  Identities=29%  Similarity=0.203  Sum_probs=34.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.+++++|+|+|++|.+.+..+...|  +|++++++.++.+.+
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL  166 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCHHHHHHH
Confidence            35789999999999999998888888  888899988765544

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.63  E-value=0.65  Score=42.09  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -+..+|+|.|+|..|..+++++..+|.++|++++++
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            356799999999999999999999999999999987

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.62  E-value=0.16  Score=42.17  Aligned_cols=37  Identities=22%  Similarity=0.468  Sum_probs=31.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .++++||+|+ |++|...++.+...|+ +|+++++++++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~   39 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAND   39 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCccc
Confidence            3578999998 9999999998888999 89999887654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=91.59  E-value=0.35  Score=45.39  Aligned_cols=47  Identities=21%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      .-.|++|.|+|.|.+|..+++.++.+|+ +|++++++..+.......|
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G  320 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEG  320 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTT
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcC
Confidence            3578999999999999999999999999 8999999887653333334

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=91.52  E-value=0.63  Score=42.72  Aligned_cols=39  Identities=26%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             HcCCCCCCEEEEECc-cHHHHH--HHHHHHHcCCCeEEEEcCC
Q 023561          196 TANVEVGSTVVIFGL-GSIGLA--VAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       196 ~~~~~~g~~VlI~G~-g~~G~~--a~~la~~~g~~~vi~~~~~  235 (280)
                      ......|+++||+|+ +++|++  .+..+...|+ +|++++++
T Consensus        54 ~~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~   95 (418)
T 4eue_A           54 AIGFRGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYE   95 (418)
T ss_dssp             SCCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECC
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecC
Confidence            344678899999998 899998  4444444599 88888774

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=91.49  E-value=0.32  Score=40.73  Aligned_cols=39  Identities=21%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CChh
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISE  237 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~~  237 (280)
                      ...+++++||+|+ |++|...+..+...|+ +|++++ ++.+
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~   49 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSP   49 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHH
Confidence            3456789999998 9999999888888999 777766 4433

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=91.45  E-value=0.65  Score=38.75  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC-ChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~  240 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++ ++++.+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~   43 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAE   43 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHH
Confidence            4689999998 9999999998889999 7777665 444443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=91.34  E-value=0.29  Score=43.73  Aligned_cols=47  Identities=28%  Similarity=0.349  Sum_probs=38.8

Q ss_pred             CCCCEEEEECccHHHHHHHHHHH-HcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~-~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      -.|++|.|+|.|.+|...++.++ ..|. +|++.+++.++.+...++|+
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~  208 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGA  208 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTC
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCc
Confidence            45789999999999999999999 9999 89999988766555555554

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.33  E-value=0.48  Score=41.61  Aligned_cols=45  Identities=29%  Similarity=0.503  Sum_probs=40.1

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|.|.+|...+..++..|.. +|+++++++++.+.+++.|+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            6899999999999999888888874 79999999999998888876

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=91.32  E-value=0.39  Score=40.77  Aligned_cols=46  Identities=20%  Similarity=0.273  Sum_probs=35.5

Q ss_pred             CCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHH-HHcCC
Q 023561          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEK-FEIG-KRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~~~-~~~~-~~~Ga  247 (280)
                      .++++||+|+   |++|...+..+...|+ +|+++++++++ .+.+ ++++.
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   56 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPA   56 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCC
Confidence            5789999984   8999999988888999 89999988765 2433 33543

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=91.32  E-value=0.42  Score=40.89  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             CCCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       200 ~~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      -.++++||+|+   |++|...+..+...|+ +|++++++++
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   58 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK   58 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence            35789999986   5999999988888899 8999988764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.22  E-value=0.53  Score=40.18  Aligned_cols=46  Identities=28%  Similarity=0.488  Sum_probs=38.9

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHHcCCc
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      .+|.|+|.|.+|...+..++..|.. +|+++++++++.+.+++.|+.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~   48 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII   48 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc
Confidence            3689999999999998888888753 689999999998888887763

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.20  E-value=0.37  Score=43.00  Aligned_cols=45  Identities=20%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      .+|.|+|.|.+|...+..++..|. .|++.++++++.+.++++|+.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~   53 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFD   53 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe
Confidence            579999999999999999999998 899999999999988888874

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=91.18  E-value=0.18  Score=44.77  Aligned_cols=46  Identities=28%  Similarity=0.413  Sum_probs=37.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++..+.+..+++|+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCc
Confidence            47899999999999999999999999 89999987645544444553

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=91.18  E-value=0.35  Score=42.72  Aligned_cols=45  Identities=27%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC-ChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~-~~~~~~~~~~~Ga  247 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++ +.++. .++++|+
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~  190 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSS-DEASYQA  190 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHH-HHHHHTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcChh-hhhhcCc
Confidence            56899999999999999999999999 8999998 76553 3444554

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=91.17  E-value=0.28  Score=44.71  Aligned_cols=46  Identities=20%  Similarity=0.122  Sum_probs=38.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++..+.+..+++|+
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~  235 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNL  235 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCc
Confidence            57899999999999999999999999 89999987655555555554

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.16  E-value=0.48  Score=43.75  Aligned_cols=51  Identities=20%  Similarity=0.109  Sum_probs=41.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh----hHHHHHHHcCCcEEEc
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGKRFGVTEFVN  252 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~----~~~~~~~~~Ga~~vi~  252 (280)
                      .+++|+|+|.|..|+.++.+++..|+ .|.+.|..+    ...+.+++.|+...+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~~~~~~~~~~L~~~gi~~~~g   62 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKPFDENPTAQSLLEEGIKVVCG   62 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSCGGGCHHHHHHHHTTCEEEES
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCcccCChHHHHHHhCCCEEEEC
Confidence            57899999999999999999999999 999999854    3455677778754443

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=91.15  E-value=0.12  Score=45.65  Aligned_cols=33  Identities=24%  Similarity=0.210  Sum_probs=26.6

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ++++||+|+ |++|...+..+...|+ +|+.+.++
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~   35 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYAT   35 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEee
Confidence            578999998 9999999998888998 55555443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=91.15  E-value=0.63  Score=40.33  Aligned_cols=46  Identities=26%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      .+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+..
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~   53 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACG   53 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCcc
Confidence            579999999999998888888998 8999999999999988888765

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=91.13  E-value=0.37  Score=43.16  Aligned_cols=45  Identities=31%  Similarity=0.355  Sum_probs=37.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+.+.|+
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~  203 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGF  203 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCc
Confidence            47899999999999999999999999 899999775 3344555665

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=91.07  E-value=0.24  Score=44.60  Aligned_cols=47  Identities=21%  Similarity=0.291  Sum_probs=38.7

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|++|.|+|.|.+|...++.++.+|+++|++.+++..+.+..+++|+
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~  209 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGA  209 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCc
Confidence            57899999999999999999999999339999987755555555654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=91.01  E-value=0.11  Score=43.12  Aligned_cols=38  Identities=18%  Similarity=0.097  Sum_probs=32.2

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcC-CCeEEEEcCChhHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFE  240 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~  240 (280)
                      -++|||+|+ |.+|...++.+...| + +|+++++++++.+
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~   62 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIH   62 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhc
Confidence            368999998 999999999998899 7 8999988876543

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=90.98  E-value=0.38  Score=46.34  Aligned_cols=55  Identities=16%  Similarity=0.147  Sum_probs=37.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC---------ChhHHH----HHHHcCCcEEEcCCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV---------ISEKFE----IGKRFGVTEFVNSKN  255 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~---------~~~~~~----~~~~~Ga~~vi~~~~  255 (280)
                      -.|+++||+|+ +++|...+..+...|+ +|+++++         +.++.+    .+++.|...+.|..+
T Consensus        17 l~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d   85 (613)
T 3oml_A           17 YDGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS   85 (613)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC
Confidence            35789999998 9999999988888999 8888876         433332    334456666666554

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=90.97  E-value=0.61  Score=44.83  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++++|.|+ +++|.+.+..+...|+ +|++++++.
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~   42 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGG   42 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCc
Confidence            5788999998 9999999999999999 888887653

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=90.93  E-value=0.29  Score=43.35  Aligned_cols=46  Identities=30%  Similarity=0.307  Sum_probs=37.1

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++.++.+.+.+.|+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCc
Confidence            46899999999999999999999999 79999987665554444443

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=90.85  E-value=1.1  Score=38.60  Aligned_cols=38  Identities=18%  Similarity=0.118  Sum_probs=30.6

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      ..+|||+|+ |.+|...+..+...|. +|+++++++.+.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~   40 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA   40 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC---
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc
Confidence            368999998 9999999999999998 8999988754443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=90.81  E-value=0.26  Score=43.88  Aligned_cols=32  Identities=31%  Similarity=0.346  Sum_probs=28.5

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +|+|+|+|+.|++++..++..|. +|+++++.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~~   34 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGI-KVTIYERNS   34 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            69999999999999999999999 899997643

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.77  E-value=0.55  Score=39.97  Aligned_cols=43  Identities=28%  Similarity=0.363  Sum_probs=37.9

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|.|+|+|.+|...+..+...|. +|+++++++++.+.+++.|.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   44 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL   44 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCC
Confidence            58899999999998888888898 89999999998888877775

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=90.76  E-value=0.45  Score=42.07  Aligned_cols=40  Identities=20%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIG  242 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~  242 (280)
                      +.+|||+|+ |.+|...+..+... |. +|++++++.++.+.+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~   65 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDL   65 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhh
Confidence            578999998 99999988888777 88 899999887665444

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=90.70  E-value=0.36  Score=37.68  Aligned_cols=51  Identities=22%  Similarity=0.080  Sum_probs=41.3

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.......++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++
T Consensus        17 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           17 AISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            44566788999999999875 8888888888744489999999988877764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=90.67  E-value=0.46  Score=37.89  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      .+|+|+|+ |.+|...++.+...|. +|+++++++++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~   40 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRL   40 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhc
Confidence            68999998 9999999988888898 899999887654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=90.64  E-value=0.54  Score=41.32  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +.+|||+|+ |.+|...++.+...|. +|++++++.++
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   45 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPT   45 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcc
Confidence            578999998 9999999988888898 89999887654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=90.62  E-value=0.6  Score=40.07  Aligned_cols=42  Identities=19%  Similarity=0.124  Sum_probs=36.5

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -.+.+++|+|+|.+|.+.+..+...|+ +|++++++.++.+.+
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l  168 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKL  168 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCHHHHHHH
Confidence            357899999999999999998888999 999999998876654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=90.60  E-value=0.19  Score=41.67  Aligned_cols=47  Identities=13%  Similarity=0.272  Sum_probs=37.6

Q ss_pred             cCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       197 ~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ....++++||-+|+| .|..+..+++..+..+|++++.+++.++.+++
T Consensus        50 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~   96 (233)
T 2gpy_A           50 LKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHK   96 (233)
T ss_dssp             HHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH
T ss_pred             HhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            344678899999987 57888888888743499999999988887765

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.56  E-value=0.36  Score=42.84  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=36.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++.++ +..+++|
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g  188 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELK  188 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHT
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcC
Confidence            56899999999999999999999999 89999988765 4444444

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=90.53  E-value=1.2  Score=38.56  Aligned_cols=71  Identities=14%  Similarity=0.146  Sum_probs=48.5

Q ss_pred             ccchhhHHHHHHHHHHcCC-CCCCEEEEECcc-HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~~-~~g~~VlI~G~g-~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      .++|....++. +.+...+ -.|++++|+|.| .+|..++.++...|+ +|+++.+....++.. -..+|-+|+.-
T Consensus       140 ~~PcTp~gv~~-lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L~~~-~~~ADIVI~Av  212 (285)
T 3l07_A          140 LESCTPKGIMT-MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTTDLKSH-TTKADILIVAV  212 (285)
T ss_dssp             CCCHHHHHHHH-HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSHHHH-HTTCSEEEECC
T ss_pred             CCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchhHHHh-cccCCEEEECC
Confidence            45555555555 3344443 588999999985 589999999999999 788887654444332 14567777653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=90.45  E-value=1.5  Score=36.22  Aligned_cols=81  Identities=15%  Similarity=-0.004  Sum_probs=49.3

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH----cCCc-EEEcCCCCCCccHHHHHHHh
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQVLLSI  268 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~----~Ga~-~vi~~~~~~~~~~~~~v~~~  268 (280)
                      ...+.+++.+||=+|.|. |..++.+++.++ -.+|++++.+++..+.+++    .|.. .-+....   .+..+.+.++
T Consensus        50 ~~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~---gda~~~l~~~  125 (221)
T 3dr5_A           50 ATTNGNGSTGAIAITPAA-GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL---SRPLDVMSRL  125 (221)
T ss_dssp             HHSCCTTCCEEEEESTTH-HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC---SCHHHHGGGS
T ss_pred             HhhCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE---cCHHHHHHHh
Confidence            444455566999888754 888888998763 2389999999988777754    4543 1111111   3344444333


Q ss_pred             cCCCceEEEec
Q 023561          269 YDLPLLTISVS  279 (280)
Q Consensus       269 ~~gg~~~v~~~  279 (280)
                      .++.+|.|++|
T Consensus       126 ~~~~fD~V~~d  136 (221)
T 3dr5_A          126 ANDSYQLVFGQ  136 (221)
T ss_dssp             CTTCEEEEEEC
T ss_pred             cCCCcCeEEEc
Confidence            34467666654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=90.41  E-value=0.34  Score=42.28  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..+.+|||+|+ |.+|...+..+...|. +|++++++.
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~   54 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFA   54 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            34679999998 9999999988888898 899888754

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=90.37  E-value=0.24  Score=41.55  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      .++++||+|+ |++|...+..+...|+ +|+++++++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   51 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGA   51 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHH
Confidence            5789999998 9999999988888999 88888876543

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=90.36  E-value=0.2  Score=42.57  Aligned_cols=36  Identities=14%  Similarity=0.150  Sum_probs=30.4

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +++|||+|+ |.+|...+..+...|. +|+++++++.+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~   39 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLD   39 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcc
Confidence            468999998 9999999888888898 88888887643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=90.27  E-value=0.62  Score=39.98  Aligned_cols=44  Identities=25%  Similarity=0.263  Sum_probs=38.5

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   45 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGA   45 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            478999999999998888888998 89999999998888777664

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=90.24  E-value=0.36  Score=39.43  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      .+|||+|+ |.+|...++.+...|. +|+++++++++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~   41 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKI   41 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccc
Confidence            58999998 9999999999999998 899999987654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.23  E-value=0.55  Score=40.46  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=37.4

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|+|.+|...+..+...|. .|+++++++++.+.+++.|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g~   47 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNGL   47 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHCE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCCE
Confidence            379999999999998888888888 89999999988888776553

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=90.22  E-value=0.25  Score=42.11  Aligned_cols=38  Identities=32%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      -.++++||+|+ |++|...+..+...|+ +|++++++.++
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~   64 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAG   64 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            45789999998 9999999988888999 89998876543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=90.18  E-value=0.73  Score=37.29  Aligned_cols=51  Identities=24%  Similarity=0.371  Sum_probs=41.3

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  244 (280)
                      +.......++++||-+|+|. |..+..+++..+. .+|++++.+++.++.+++
T Consensus        69 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            45666788999999999874 8888888888762 389999999988777765

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=90.14  E-value=0.27  Score=41.72  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=31.8

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      ..++++||+|+ |++|...+..+...|+ +|++++++.+
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   63 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIK   63 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChh
Confidence            35789999998 9999999988888999 8999887654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=90.06  E-value=0.52  Score=39.03  Aligned_cols=50  Identities=26%  Similarity=0.363  Sum_probs=41.3

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++++||-+|+| .|..+..+++..+ .+|++++.+++..+.+++
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHH
Confidence            4556678899999999987 5888889998877 489999999988777765

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=90.04  E-value=1.7  Score=37.99  Aligned_cols=73  Identities=14%  Similarity=0.053  Sum_probs=48.4

Q ss_pred             ccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCcEEEcCC
Q 023561          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSK  254 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~~vi~~~  254 (280)
                      .++|....++..+.+..-.-.|++++|+|. +.+|..++.++...|+ .|+++.+....+++.+ -..+|.+|+.-
T Consensus       144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~l~~~~~~ADIVI~Av  218 (300)
T 4a26_A          144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTEDMIDYLRTADIVIAAM  218 (300)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHHHHHHHHTCSEEEECS
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCchhhhhhccCCEEEECC
Confidence            355555555553333333458999999998 4589999999999999 8888887444444111 13456666543

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=89.95  E-value=0.37  Score=39.75  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      ++++||+|+ |++|...+..+...|+ +|++++++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~   37 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE   37 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCcc
Confidence            578999998 9999998888888899 8888877643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.94  E-value=0.49  Score=42.49  Aligned_cols=38  Identities=26%  Similarity=0.497  Sum_probs=33.5

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      ..++++|+|+|+|.+|...++.++.+|. ++++++.++.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~-~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGY-KVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            4678999999999999999999999999 8888886543

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=89.93  E-value=0.35  Score=42.06  Aligned_cols=40  Identities=18%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             cCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       197 ~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      ..-+++.+|||+|+ |.+|...+..+...|. +|++++++.+
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   49 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRS   49 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCc
Confidence            34567899999998 9999999988888898 8998887654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=89.91  E-value=0.36  Score=40.37  Aligned_cols=34  Identities=32%  Similarity=0.504  Sum_probs=29.3

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +++||+|+ |++|...+..+...|+ +|++++++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~   36 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            47899998 9999999988888999 8998888653

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=89.80  E-value=0.87  Score=42.12  Aligned_cols=47  Identities=28%  Similarity=0.379  Sum_probs=35.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH---HHHHHHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK---FEIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~---~~~~~~~Ga~  248 (280)
                      +++++||+|+ |++|...+..+...|+ +|+.+++++..   .+..++.+..
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~~~~l~~~~~~~~~~  262 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLKRVADKVGGT  262 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHHHTCE
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCe
Confidence            5789999998 9999998888888899 88888876432   2233446654

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=89.79  E-value=0.35  Score=39.41  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      +|||+|+ |.+|...++.+...|. +|+++++++++.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~   37 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQV   37 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccch
Confidence            6899998 9999999999988998 899999987654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=89.75  E-value=0.69  Score=40.02  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=32.7

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++|.|+|+|.+|...+..+...|. .|+++++++++++.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            689999999999977776667798 899999998876653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=89.73  E-value=0.27  Score=41.86  Aligned_cols=38  Identities=16%  Similarity=0.058  Sum_probs=30.6

Q ss_pred             EEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIG  242 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~  242 (280)
                      +|||+|+ |.+|...++.+... |. +|+++.++.++.+.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~   41 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDD   41 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGG
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHh
Confidence            5899998 99999988887777 77 788888887665433

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=89.73  E-value=0.49  Score=40.10  Aligned_cols=39  Identities=13%  Similarity=0.212  Sum_probs=30.8

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc-CChhHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKF  239 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~-~~~~~~  239 (280)
                      ..+++++|+|+ |++|...+..+...|+ +|++++ ++.++.
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~   63 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHV   63 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHH
Confidence            35688999998 9999999988888999 788887 444443

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=89.71  E-value=0.42  Score=42.48  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      ++|+|+|+|..|..++..||.+|. ++++++.+++
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~-~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGM-KVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            689999999999999999999999 8888886653

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=89.69  E-value=0.49  Score=39.46  Aligned_cols=39  Identities=26%  Similarity=0.219  Sum_probs=31.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~  240 (280)
                      .++++||+|+ +++|...+..+...|+ +|+++ .++.++.+
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~   46 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAE   46 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHH
Confidence            5789999998 9999999988888999 67664 55555443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=89.68  E-value=0.98  Score=38.27  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=34.4

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      .| +++|+|+|.+|...+..+...|+ +|++.+++.++.+.+
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l  155 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALAL  155 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            56 99999999999999999999999 899999998775543

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=89.64  E-value=1.4  Score=38.44  Aligned_cols=34  Identities=24%  Similarity=0.121  Sum_probs=29.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..+|||+|+ |.+|...+..+...|. +|+++.+++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            358999998 9999999988888897 788888865

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=89.62  E-value=0.35  Score=45.70  Aligned_cols=45  Identities=31%  Similarity=0.386  Sum_probs=34.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG  246 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  246 (280)
                      .+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+. +++
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~~~~a~~la~~~~  408 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERALELAEAIG  408 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC
Confidence            46789999999999999999999999 7888999988766554 354

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=89.61  E-value=0.7  Score=40.27  Aligned_cols=44  Identities=20%  Similarity=0.190  Sum_probs=39.3

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   65 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGA   65 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCC
Confidence            689999999999999888888998 89999999999888877775

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=89.55  E-value=0.57  Score=42.86  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+.++++|+|+|+|.+|...++.++.+|. ++++++.++.
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~-~v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGY-RVAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            46789999999999999999999999999 7888886543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=89.51  E-value=0.68  Score=40.14  Aligned_cols=50  Identities=14%  Similarity=0.268  Sum_probs=41.6

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++++||-+|.|. |..+..+++..|+ +|++++.+++.++.+++
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  131 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQ  131 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            45566788999999999866 7788888888788 99999999988877765

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=89.51  E-value=0.41  Score=39.70  Aligned_cols=33  Identities=33%  Similarity=0.427  Sum_probs=28.5

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ++|||+|+ |++|...+..+...|+ +|+++++++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~   35 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQ   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCh
Confidence            47999998 9999999888888898 899988764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=89.49  E-value=0.63  Score=40.59  Aligned_cols=43  Identities=23%  Similarity=0.134  Sum_probs=35.8

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|+|+|+|.+|.+.+..+. .|. .|..+++++++.+.+++.|.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~~~~~~l~~~G~   45 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQEQAAAIQSEGI   45 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHCE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCHHHHHHHHhCCc
Confidence            47999999999988777777 787 89999999888887776664

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.46  E-value=0.79  Score=40.15  Aligned_cols=45  Identities=18%  Similarity=0.242  Sum_probs=39.4

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      ..+|.|+|.|.+|...++.+...|. .|++.++++++.+.+.+.|+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~   75 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGA   75 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            4689999999999998888888898 89999999999888876665

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=89.45  E-value=0.56  Score=39.89  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=39.5

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh------hHH-HHHHHcCCcEEEcCCC
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS------EKF-EIGKRFGVTEFVNSKN  255 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~------~~~-~~~~~~Ga~~vi~~~~  255 (280)
                      ...+.++|||+|+ |.+|...+..+...|. +|++++++.      +.. +.+++.+++.+++.-.
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~   72 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAA   72 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCc
Confidence            3456789999998 9999999988888898 889887642      222 2233347888887543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=89.45  E-value=0.96  Score=36.40  Aligned_cols=49  Identities=24%  Similarity=0.177  Sum_probs=40.1

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +......+++++||-+|+|. |..+..+++. +. +|++++.+++..+.+++
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence            45667889999999999864 7778888887 55 89999999988877765

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=89.42  E-value=0.41  Score=43.05  Aligned_cols=38  Identities=29%  Similarity=0.348  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+.++++|+|+|+|.+|...++.++.+|. ++++++.++
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~-~vi~~d~~~   47 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAAKEMGY-KIAVLDPTK   47 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            35688999999999999999999999999 888888654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=89.32  E-value=0.35  Score=42.66  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=27.8

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      |+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus         7 ViIVGaGpaGl~~A~~La~~G~-~V~v~Er~~   37 (397)
T 3oz2_A            7 VLVVGGGPGGSTAARYAAKYGL-KTLMIEKRP   37 (397)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8899999999999999999999 899998754

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=89.31  E-value=0.53  Score=40.95  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|||+|+ |.+|...+..+...|. +|++++++.++.+.+...++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~   58 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEP   58 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCe
Confidence            47999998 9999999988888898 89999887665443333344

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=89.29  E-value=1.7  Score=37.83  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=28.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +++|||+|+ |.+|...+..+...|. +|+++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   35 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNF   35 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            468999998 9999999888888898 78888763

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=89.22  E-value=0.9  Score=39.05  Aligned_cols=50  Identities=22%  Similarity=0.348  Sum_probs=42.1

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++++||-+|.|. |..+..+++..|. +|++++.+++.++.+++
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            55677889999999999875 7888899998887 89999999988777764

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=89.20  E-value=1.8  Score=37.55  Aligned_cols=71  Identities=14%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             ccchhhHHHHHHHHHHcC-CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~-~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      .++|....++. +++... .-.|++++|+|. +.+|..++.++...|+ +|+++.+....++..- ..||-+|+.-
T Consensus       139 ~~PcTp~gv~~-lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~~L~~~~-~~ADIVI~Av  211 (285)
T 3p2o_A          139 FLPCTPLGVMK-LLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTKDLSLYT-RQADLIIVAA  211 (285)
T ss_dssp             CCCHHHHHHHH-HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHHHHH-TTCSEEEECS
T ss_pred             CCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCchhHHHHh-hcCCEEEECC
Confidence            35555555555 334443 358999999998 5589999999999999 7888876655544322 4567776643

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=89.19  E-value=0.46  Score=41.01  Aligned_cols=38  Identities=18%  Similarity=0.213  Sum_probs=29.8

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .++.++|||+|+ |.+|...++.+...|. +|++++++.+
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   47 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNE   47 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            356689999998 9999999988888898 8888887654

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=89.02  E-value=0.36  Score=40.24  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=28.4

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHH-cCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~-~g~~~vi~~~~~~~  237 (280)
                      +++++||+|+ +++|...+..+.. .|. +|+.++++++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~-~v~~~~~~~~   40 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH-TVINIDIQQS   40 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE-EEEEEESSCC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc-EEEEeccccc
Confidence            4678999998 9999988766655 677 8888887654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=88.93  E-value=0.78  Score=40.49  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=33.5

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      -.+|.|+|+|.+|...++.+...|+ .|+..|.+++.++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~   44 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITG   44 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence            4689999999999999999999999 89999998875543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.87  E-value=0.45  Score=39.47  Aligned_cols=46  Identities=15%  Similarity=0.111  Sum_probs=35.9

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      ...++++|+|.|.+|...++.+...|.  |+++++++++.+.++ .|..
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~~~   52 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SGAN   52 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TTCE
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cCCe
Confidence            445789999999999988888887776  889999988887776 6643

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=88.87  E-value=1.4  Score=36.92  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             CCCCEEEEECc---cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~---g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -.++++||+|+   +++|...+..+...|+ +|++++++.
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~   56 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASR   56 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSS
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCc
Confidence            35789999986   4999998888888899 888887764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=88.73  E-value=0.97  Score=37.56  Aligned_cols=52  Identities=19%  Similarity=0.135  Sum_probs=42.4

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHHc
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~~  245 (280)
                      +.....++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            45667889999999999875 888888998854 34999999999888887753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=88.66  E-value=1.2  Score=39.17  Aligned_cols=48  Identities=19%  Similarity=0.259  Sum_probs=38.0

Q ss_pred             CCEEEEECccHHHHH-HHHHHHHcCCCeEEEEcCCh--hHHHHHHHcCCcEE
Q 023561          202 GSTVVIFGLGSIGLA-VAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTEF  250 (280)
Q Consensus       202 g~~VlI~G~g~~G~~-a~~la~~~g~~~vi~~~~~~--~~~~~~~~~Ga~~v  250 (280)
                      .++|.++|.|++|+. ++.+++.+|+ .|.+.|..+  ...+.+++.|+...
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~~~~~~~~L~~~gi~v~   54 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKMYPPMSTQLEALGIDVY   54 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHTTCEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCCCcHHHHHHHhCCCEEE
Confidence            468999999999996 7889999999 899999864  34566777776543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=88.60  E-value=2.2  Score=37.51  Aligned_cols=45  Identities=16%  Similarity=0.042  Sum_probs=35.7

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .....+++|+|+|.+|...+..+.. .+.+.|.+.+++.+|.+.+.
T Consensus       122 ~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la  167 (322)
T 1omo_A          122 RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFV  167 (322)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHH
Confidence            3567899999999999887766655 57779999999988766554

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=88.59  E-value=1.1  Score=38.97  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=30.4

Q ss_pred             EEEEECc-cHHHHHHHHHHHHc-CCCeEEEEcCChhHHH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFE  240 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~  240 (280)
                      +|||+|+ |.+|...+..+... |. +|++++++.++.+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~   39 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAIS   39 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGG
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcchHH
Confidence            6999998 99999999888887 78 8999988776643

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=88.58  E-value=0.35  Score=42.36  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=28.6

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -..+++|||+|+ |.+|...+..+...|. +|+++++++
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~   53 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRP   53 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            345689999998 9999999999999998 788887764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=88.58  E-value=0.39  Score=39.35  Aligned_cols=47  Identities=17%  Similarity=0.162  Sum_probs=36.8

Q ss_pred             cCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH
Q 023561          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       197 ~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  244 (280)
                      ....++++||-+|+| .|..++.+++..+ ..+|++++.+++..+.+++
T Consensus        65 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  112 (229)
T 2avd_A           65 ARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRP  112 (229)
T ss_dssp             HHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH
T ss_pred             HHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            344678899999986 5788888888764 3489999999988777764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=88.56  E-value=2  Score=37.53  Aligned_cols=48  Identities=13%  Similarity=-0.055  Sum_probs=37.4

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHH-cC
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FG  246 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~-~G  246 (280)
                      .....+|.|+|.|.+|...+..+... |.++|.+.++++++.+.+.+ ++
T Consensus       132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~  181 (312)
T 2i99_A          132 PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQ  181 (312)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSS
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhh
Confidence            34567999999999998877766554 87789999999888766544 55

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=88.50  E-value=0.54  Score=40.94  Aligned_cols=36  Identities=19%  Similarity=0.072  Sum_probs=29.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+++|||+|+ |.+|...+..+...|. +|+++.++.+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~   40 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPT   40 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            4688999998 9999999888888898 8888777665

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=88.46  E-value=0.97  Score=39.34  Aligned_cols=44  Identities=18%  Similarity=0.263  Sum_probs=36.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      ...++|.|+|+|.+|...++.+. .|. .|++.++++++++.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHH
Confidence            44689999999999988777777 899 899999999988877664

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=88.42  E-value=1.3  Score=38.93  Aligned_cols=68  Identities=18%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             CEEEEECccHHHHHHHHHHH--HcCCCeEEEEcCChhH--HHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          203 STVVIFGLGSIGLAVAEGAR--LCGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~--~~g~~~vi~~~~~~~~--~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      -+|.|+|.|.+|...+..+.  ..+.+.+.+.++++++  +++++++|....        .+..+.+.+.+++ ++|.|+
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~--------~~~~e~ll~~~~~~~iDvV~   76 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--------YAGVEGLIKLPEFADIDFVF   76 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--------SSHHHHHHHSGGGGGEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc--------cCCHHHHHhccCCCCCcEEE
Confidence            47899999999988887774  3466556667777665  667778887522        1233445454444 566655


Q ss_pred             e
Q 023561          278 V  278 (280)
Q Consensus       278 ~  278 (280)
                      +
T Consensus        77 ~   77 (312)
T 1nvm_B           77 D   77 (312)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=88.27  E-value=1.4  Score=36.52  Aligned_cols=50  Identities=28%  Similarity=0.282  Sum_probs=40.8

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++.+||=+|.|. |..+..+++..+. +|++++.+++.++.+++
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHH
Confidence            45667789999999999865 7788888888887 89999999887777654

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=88.22  E-value=0.7  Score=39.76  Aligned_cols=32  Identities=16%  Similarity=0.071  Sum_probs=28.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      |++|||+|+ |.+|...+..+...|. .|+++.+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGY-SVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCC-EEEEEEe
Confidence            578999998 9999999988888998 8888776

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=88.19  E-value=0.47  Score=39.42  Aligned_cols=47  Identities=15%  Similarity=0.154  Sum_probs=37.2

Q ss_pred             cCCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH
Q 023561          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       197 ~~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  244 (280)
                      ....++++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++
T Consensus        56 ~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  103 (239)
T 2hnk_A           56 TKISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARK  103 (239)
T ss_dssp             HHHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            344678899999986 4888889999874 3389999999988877765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=88.19  E-value=0.86  Score=39.63  Aligned_cols=45  Identities=22%  Similarity=0.184  Sum_probs=39.1

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      ..+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   53 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGA   53 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            4679999999999998888888998 89999999998888777665

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=88.16  E-value=1.9  Score=37.65  Aligned_cols=70  Identities=10%  Similarity=0.111  Sum_probs=47.2

Q ss_pred             ccchhhHHHHHHHHHHcC-CCCCCEEEEECcc-HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~-~~~g~~VlI~G~g-~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      .++|+....+. +++... --.|++++|+|.| .+|..++.++...|+ +|+++.+..+.++..- ..||-+|..
T Consensus       144 ~~PcTp~gi~~-ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L~~~~-~~ADIVI~A  215 (301)
T 1a4i_A          144 FIPCTPKGCLE-LIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHLDEEV-NKGDILVVA  215 (301)
T ss_dssp             CCCHHHHHHHH-HHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSHHHHH-TTCSEEEEC
T ss_pred             ccCchHHHHHH-HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCcccHHHHh-ccCCEEEEC
Confidence            45655544444 334444 3578999999997 689999999999999 7888876554443321 345666654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=88.15  E-value=0.55  Score=40.17  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=29.1

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +++|+|+|+ |.+|...+..+...|. .|+++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCC
Confidence            467999998 9999999988888898 788888876

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.14  E-value=0.64  Score=38.24  Aligned_cols=44  Identities=14%  Similarity=0.046  Sum_probs=35.1

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      ..+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g   71 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRNPKRTARLFPSA   71 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHSBTT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC
Confidence            4579999999999998888888888 7889999988776654333

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=88.13  E-value=0.73  Score=41.49  Aligned_cols=45  Identities=29%  Similarity=0.271  Sum_probs=36.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++.. +.+.+++.|+
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~  219 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGV  219 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTC
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCe
Confidence            37899999999999999999999999 899999874 3334444553

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=88.05  E-value=1.2  Score=38.16  Aligned_cols=44  Identities=18%  Similarity=0.370  Sum_probs=38.0

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|+ |.+|...+..+...|. .|+++++++++.+.+.+.|+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g~   56 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGMGI   56 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhcCC
Confidence            47999999 9999998888888898 89999999988887776663

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=88.03  E-value=0.61  Score=41.66  Aligned_cols=36  Identities=36%  Similarity=0.445  Sum_probs=32.4

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++..+
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  202 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS  202 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            57899999999999999999999999 8999987654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=87.94  E-value=2.6  Score=36.48  Aligned_cols=70  Identities=14%  Similarity=0.115  Sum_probs=47.1

Q ss_pred             ccchhhHHHHHHHHHHcCC-CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~~-~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      .++|....++. +++...+ -.|++++|+|. +.+|..++.++...|+ +|+++.+....++..- ..+|-+|+.
T Consensus       140 ~~PcTp~gv~~-lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T~~L~~~~-~~ADIVI~A  211 (286)
T 4a5o_A          140 LRPCTPKGIMT-LLASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFTRDLADHV-SRADLVVVA  211 (286)
T ss_dssp             SCCHHHHHHHH-HHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTCSCHHHHH-HTCSEEEEC
T ss_pred             CCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCCcCHHHHh-ccCCEEEEC
Confidence            45555555555 3444443 57999999998 5699999999999999 7888876444433221 345666654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=87.91  E-value=0.89  Score=40.25  Aligned_cols=45  Identities=24%  Similarity=0.249  Sum_probs=36.8

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH-HHHHHHcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGV  247 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~-~~~~~~~Ga  247 (280)
                      +.+|.|+|.|.+|...+..++..|. .|++.++++++ .+.+++.|+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~   61 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGL   61 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCC
Confidence            3579999999999999999999998 78888887655 666666665

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=87.76  E-value=1.8  Score=39.99  Aligned_cols=41  Identities=12%  Similarity=0.064  Sum_probs=34.2

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++|+|+|+|.+|...+..+...|. +|++++++.++.+.+.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la   43 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLS   43 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHH
Confidence            5789999999999998888888898 7999999887766543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=87.72  E-value=0.97  Score=38.78  Aligned_cols=44  Identities=20%  Similarity=0.212  Sum_probs=37.4

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|.|.+|...+..+...|. +|+++++++++.+.+++.|+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   49 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGA   49 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            379999999999998888888898 89999999988887776664

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=87.71  E-value=0.63  Score=40.04  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=27.7

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +++|||+|+ |.+|...++.+...|. +|++++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCC
Confidence            578999998 9999999988888898 899888654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=87.54  E-value=1.2  Score=37.93  Aligned_cols=46  Identities=26%  Similarity=0.175  Sum_probs=35.0

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcC-CCeEEEEcCChhHH--HHHHHcCCc
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKF--EIGKRFGVT  248 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g-~~~vi~~~~~~~~~--~~~~~~Ga~  248 (280)
                      .++|||+|+ |.+|...+..+...| . +|+++++++++.  +.+...|+.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~   54 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAE   54 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCE
Confidence            478999998 999999988888778 7 899998886653  233345554

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=87.46  E-value=1.2  Score=40.40  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +.-+|+|.|+|..|..+++++..+|+++|+++|++
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            34689999999999999999999999999999875

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=87.37  E-value=5.1  Score=35.37  Aligned_cols=59  Identities=19%  Similarity=0.293  Sum_probs=46.2

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcC
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +...+++|++|+..++|-.|.+++..++..|.+-++++..  +..|++.++.+|++-++..
T Consensus        71 ~~g~~~~g~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~  131 (343)
T 2pqm_A           71 KDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE  131 (343)
T ss_dssp             HHTSSCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred             HcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence            4455677788887778999999999999999976666653  4679999999999766543

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=87.26  E-value=5.6  Score=34.37  Aligned_cols=59  Identities=17%  Similarity=0.209  Sum_probs=45.4

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcC
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +...++++++|+..++|-.|.+++..++..|.+-++++..  +..|++.++.+|++-++..
T Consensus        54 ~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~  114 (303)
T 2v03_A           54 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVT  114 (303)
T ss_dssp             HTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred             HcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEEC
Confidence            3444567788887778999999999999999965555543  4679999999999765543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=87.17  E-value=1.4  Score=39.47  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=39.1

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      ..+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~   66 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGI   66 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            4689999999999999888888998 89999999998888776654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=87.14  E-value=2.3  Score=33.51  Aligned_cols=73  Identities=19%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCC---------CeEEEEcCChhHHHHHHHcCCcEEE-cCCCCCCccHHHHHHH
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGA---------TRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQVLLS  267 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~---------~~vi~~~~~~~~~~~~~~~Ga~~vi-~~~~~~~~~~~~~v~~  267 (280)
                      .++++++||-+|+|. |..+..+++..+.         .+|+++|.++.+.     ...-.++ ..+- ......+.+.+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~-~~~~~~~~~~~   91 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADV-TDPRTSQRILE   91 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCT-TSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccC-CCHHHHHHHHH
Confidence            468899999999887 8889999998874         4899999887431     1112344 2221 22334455555


Q ss_pred             hcCC-CceEEE
Q 023561          268 IYDL-PLLTIS  277 (280)
Q Consensus       268 ~~~g-g~~~v~  277 (280)
                      ..++ .+|.|.
T Consensus        92 ~~~~~~fD~V~  102 (196)
T 2nyu_A           92 VLPGRRADVIL  102 (196)
T ss_dssp             HSGGGCEEEEE
T ss_pred             hcCCCCCcEEE
Confidence            5555 666655

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.10  E-value=1.2  Score=36.09  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=32.3

Q ss_pred             EEEEEC-ccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          204 TVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       204 ~VlI~G-~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|+|+| +|.+|...+..+...|. +|+++++++++.+.+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~~~~~~~~   41 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA   41 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            588999 69999998888888888 8999999887765544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=86.98  E-value=0.73  Score=40.85  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=33.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.++.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh
Confidence            46899999999999999999999999 899999876543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=86.87  E-value=0.65  Score=39.86  Aligned_cols=43  Identities=21%  Similarity=0.166  Sum_probs=36.9

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~   45 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGA   45 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTC
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            68899999999988888888898 89999999998888776664

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=86.85  E-value=1.9  Score=40.03  Aligned_cols=43  Identities=12%  Similarity=0.135  Sum_probs=34.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHc-CCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++++|+|+|+|.+|..++..+... +. +|++++++.++.+.+.+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~   65 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAK   65 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHG
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHH
Confidence            356899999999999988888777 66 79999999888766543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=86.84  E-value=1.3  Score=39.00  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=36.0

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .+|.|+|+|.+|...+..+...|. .|+++++++++.+.+++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~   46 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDR   46 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhc
Confidence            479999999999988888888888 899999998888877664

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=86.83  E-value=1.5  Score=36.70  Aligned_cols=44  Identities=34%  Similarity=0.339  Sum_probs=36.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH-cCCc
Q 023561          204 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      +|.|+|+|.+|...+..+...| . .|+++++++++.+.+.+ +|+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~~~~~~~~~~~~g~~   47 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEKELGVE   47 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC-eEEEECCCHHHHHHHHHhcCCE
Confidence            5889999999998887777778 6 89999999988877765 5754

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=86.83  E-value=0.73  Score=40.08  Aligned_cols=36  Identities=36%  Similarity=0.469  Sum_probs=32.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  156 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSV  156 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCC
T ss_pred             ecchheeeccCchhHHHHHHHHhhCc-EEEEEecccc
Confidence            47899999999999999999999999 8999988653

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=86.82  E-value=0.61  Score=41.29  Aligned_cols=36  Identities=39%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  180 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEI  180 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            46899999999999999999999999 8999987654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=86.80  E-value=0.68  Score=39.32  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=30.7

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +.+|||+|+|.+|...+..+...|. .|++++++.++
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            4679999999999999999988998 78888887554

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=86.74  E-value=0.82  Score=39.18  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+.+|||+|+ |.+|...+..+...|. +|++++++..
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            3579999998 9999999998888898 7899987654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=86.68  E-value=1  Score=39.10  Aligned_cols=44  Identities=18%  Similarity=0.262  Sum_probs=37.2

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   74 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGA   74 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            579999999999998888888898 79999999888777766664

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=86.60  E-value=0.58  Score=39.30  Aligned_cols=46  Identities=9%  Similarity=0.142  Sum_probs=36.3

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHHHHHHH
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  244 (280)
                      ...++++||=+|+|. |..+..+++..+ ..+|++++.+++.++.+++
T Consensus        60 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  106 (248)
T 3tfw_A           60 RLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARE  106 (248)
T ss_dssp             HHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH
T ss_pred             hhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence            445788999999764 778888888864 4489999999988877765

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=86.57  E-value=0.86  Score=39.60  Aligned_cols=35  Identities=11%  Similarity=-0.003  Sum_probs=29.7

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +++|||+|+ |.+|...+..+...|. +|+++.++.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-~V~~~~r~~~   44 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY-AVNTTVRDPD   44 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCcc
Confidence            689999998 9999999988888998 7887766644

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=86.53  E-value=0.81  Score=40.47  Aligned_cols=35  Identities=34%  Similarity=0.666  Sum_probs=31.9

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~  170 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTG  170 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCc
Confidence            47899999999999999999999999 899998764

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=86.41  E-value=0.67  Score=41.09  Aligned_cols=36  Identities=28%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  179 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM  179 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            46899999999999999999999999 8999987654

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=86.31  E-value=1.2  Score=41.15  Aligned_cols=40  Identities=18%  Similarity=0.071  Sum_probs=32.0

Q ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHc---CCCeEEEEcCChhHH
Q 023561          199 VEVGSTVVIFGL-GSIGLAVAEGARLC---GATRIIGVDVISEKF  239 (280)
Q Consensus       199 ~~~g~~VlI~G~-g~~G~~a~~la~~~---g~~~vi~~~~~~~~~  239 (280)
                      ...+++|||+|+ |.+|...+..+...   |. +|+++++++++.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG-RLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC-EEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC-EEEEEECCCCcH
Confidence            356789999998 99999888766666   77 899999876543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=86.30  E-value=1.4  Score=34.44  Aligned_cols=49  Identities=20%  Similarity=0.136  Sum_probs=38.9

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.......++++||-+|+|. |..+..+++.. . ++++++.+++..+.+++
T Consensus        25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHH
Confidence            44556788999999999866 77777777766 4 89999999988777765

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=86.27  E-value=0.88  Score=37.44  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=30.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCC-eEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~-~vi~~~~~~~~  238 (280)
                      .++++||+|+ |.+|...+..+...|.. +|+++++++++
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~   56 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   56 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence            3679999998 99999998888888863 68888876644

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.25  E-value=1.5  Score=38.34  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=35.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      ...+|+|+|+|.+|.+.+..+...|. .|..+ +++++.+.+++.|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g   61 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATG   61 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCC
Confidence            34689999999999998888888888 88888 7888888777655

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=86.21  E-value=0.93  Score=39.94  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHH--cCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARL--CGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~--~g~~~vi~~~~~~  236 (280)
                      .+.+|||+|+ |.+|...+..+..  .|. +|+++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~   46 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFR   46 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCC
Confidence            5689999998 9999998888877  899 899988754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=86.19  E-value=1.9  Score=36.08  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ..+.+|.|+|.|.+|...+..+...|. .|++.++++++
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~   54 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA   54 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            346899999999999999988888898 89999999887

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=86.17  E-value=1.2  Score=38.72  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=32.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ...+|+|+|+|++|..++..+...|..++..+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            357999999999999999999999999999999765

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=86.17  E-value=0.93  Score=40.56  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=28.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCC-eEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~~~~  236 (280)
                      +|++|+|+|+|+-|+.++..++..+.+ +|++++.++
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            489999999999999888777766532 788888654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=86.14  E-value=1.2  Score=39.94  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=28.5

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -.|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            368999999999999988888999 899998754

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=86.11  E-value=0.91  Score=39.80  Aligned_cols=36  Identities=33%  Similarity=0.444  Sum_probs=32.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  178 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPK  178 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            56899999999999999999999999 8999988654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=86.11  E-value=1.3  Score=36.79  Aligned_cols=52  Identities=19%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      +.....++++.+||-+|+| .|..+..+++..+. +|++++.+++.++.+++..
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~   98 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERV   98 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh
Confidence            4556678899999999986 47788888887777 9999999999999998754

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=86.08  E-value=0.47  Score=40.23  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=34.3

Q ss_pred             EEEEECc-cHHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHHcCCc
Q 023561          204 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~--g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +|||+|+ |.+|...+..+...  |. +|+++++++++.+.+...++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~   48 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVE   48 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCE
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCe
Confidence            6899998 99999988888777  87 788888887766555544543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=86.07  E-value=0.89  Score=39.58  Aligned_cols=35  Identities=31%  Similarity=0.474  Sum_probs=29.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+.+|||+|+ |.+|...+..+...|. +|++++++.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~   55 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFA   55 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            3578999998 9999999988888898 889888764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=86.05  E-value=1.3  Score=35.81  Aligned_cols=48  Identities=19%  Similarity=0.250  Sum_probs=37.5

Q ss_pred             HHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +....+.++.+||-+|.|. |..+..+++. |+ .|+++|.+++-++.+++
T Consensus        15 ~~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~   62 (203)
T 1pjz_A           15 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFT   62 (203)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHH
T ss_pred             HHhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHH
Confidence            3455678899999998754 5667777775 88 89999999988877765

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=86.05  E-value=1.3  Score=38.49  Aligned_cols=43  Identities=19%  Similarity=0.069  Sum_probs=36.1

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga  247 (280)
                      +|.|+|+|.+|...+..+...|. .|+++++  ++++.+.+++.|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~   46 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGRE   46 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEccCCHHHHHHHHHhCc
Confidence            58899999999988877777888 8999999  8888888776653

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=86.00  E-value=2.2  Score=36.77  Aligned_cols=69  Identities=9%  Similarity=-0.068  Sum_probs=47.1

Q ss_pred             ccchhhHHHHHHHHHHcCCCCCCEEEEECcc-HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      .++|+....+.. .+... -.|++++|+|.| .+|..++.++...|+ +|+++.+....++..- ..+|-+|+.
T Consensus       131 ~~PcTp~gv~~l-L~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t~~L~~~~-~~ADIVI~A  200 (276)
T 3ngx_A          131 LVPATPRAVIDI-MDYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKTKDIGSMT-RSSKIVVVA  200 (276)
T ss_dssp             SCCHHHHHHHHH-HHHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHHHHH-HHSSEEEEC
T ss_pred             CCCCcHHHHHHH-HHHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCcccHHHhh-ccCCEEEEC
Confidence            455555555553 34445 789999999985 689999999999999 7888876554443321 234555543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=85.99  E-value=0.58  Score=39.51  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             EEEEECc-cHHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHHcCCc
Q 023561          204 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~--g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +|||+|+ |.+|...+..+...  |. +|+++++++++.+.+...++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~   47 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGIT   47 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCe
Confidence            4899998 99999988888777  88 788888887766555444543

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=85.95  E-value=4  Score=35.93  Aligned_cols=60  Identities=18%  Similarity=0.251  Sum_probs=44.9

Q ss_pred             HHHcCCCCCCEEEEE-CccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcC
Q 023561          194 WRTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~-G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~  253 (280)
                      .+...+++|++|+|. ++|..|.+++..++.+|.+-++++..  +..|++.++.+|++-++..
T Consensus        63 ~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~  125 (334)
T 3tbh_A           63 EKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTP  125 (334)
T ss_dssp             HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred             HHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence            344456888887454 56999999999999999965555544  3578899999999766543

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=85.94  E-value=1.6  Score=37.35  Aligned_cols=44  Identities=30%  Similarity=0.428  Sum_probs=36.8

Q ss_pred             CEEEEECccHHHHHHHHHHHHc--CCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~--g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      .+|.|+|.|.+|...+..+...  +. .|++.++++++.+.+++.|.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~-~V~~~d~~~~~~~~~~~~g~   52 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHY-KIVGYNRSDRSRDIALERGI   52 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSHHHHHHHHHTTS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHHcCC
Confidence            4799999999999887777766  45 89999999998888877776

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=85.94  E-value=4.8  Score=34.92  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=44.0

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEc
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~  252 (280)
                      +...++++++|+..++|..|.+++..++.+|.+-++++..  +..|++.++.+|++-++.
T Consensus        55 ~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~  114 (316)
T 1y7l_A           55 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLT  114 (316)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEe
Confidence            3344566677766566999999999999999976666653  467899999999976553

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=85.93  E-value=6.6  Score=34.32  Aligned_cols=61  Identities=20%  Similarity=0.213  Sum_probs=46.0

Q ss_pred             HHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcCC
Q 023561          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      .+...++++++|+...+|..|.+++..++.+|.+-++++..  +..|.+.++.+|++-++...
T Consensus        65 ~~~g~l~~~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~  127 (325)
T 3dwg_A           65 EADGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA  127 (325)
T ss_dssp             HHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred             HHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence            34445677888877677999999999999999965555543  45788999999997665443

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=85.86  E-value=3  Score=36.00  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ++|||+|+ |.+|...+..+...|. +|+++++.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   34 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeCC
Confidence            47999998 9999999988888898 89988763

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=85.77  E-value=2.4  Score=34.48  Aligned_cols=46  Identities=20%  Similarity=0.269  Sum_probs=37.6

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcC-----CCeEEEEcCChhHHHHHHH
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCG-----ATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g-----~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++++++||-+|+|. |..+..+++..+     ..+|++++.+++..+.+++
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~  127 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE  127 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHH
Confidence            578899999999866 788888888875     2389999999988777765

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=85.75  E-value=1.6  Score=38.26  Aligned_cols=46  Identities=17%  Similarity=0.132  Sum_probs=37.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      ....+|.|+|+|.+|.+.+..+...|. .|.++++++++.+.+++.|
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~~~~~~~l~~~g   57 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHENGE-EVILWARRKEIVDLINVSH   57 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHS
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhC
Confidence            345789999999999998887777888 8999999988888777655

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=85.68  E-value=1.8  Score=38.21  Aligned_cols=55  Identities=20%  Similarity=0.163  Sum_probs=39.9

Q ss_pred             cccchhhHHHHHHHHHH--------cC-CCCCCEEEEECcc-HHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          180 CLLSCGVSTGVGAAWRT--------AN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       180 a~l~~~~~ta~~~l~~~--------~~-~~~g~~VlI~G~g-~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..++|....++..+.+.        .. --.|++++|+|+| .+|..+++++...|+ +|++++++
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~  210 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN  210 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence            35566666665533331        23 3478999999997 569999999999998 78888665

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=85.68  E-value=1  Score=38.56  Aligned_cols=43  Identities=26%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|.|+|.|.+|...+..+...|. .|+++++++++.+.+.+.|+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   44 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGE   44 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            58899999999998888888898 79999999988887776664

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=85.67  E-value=1.6  Score=36.98  Aligned_cols=50  Identities=14%  Similarity=0.249  Sum_probs=40.7

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++.+||-+|.|. |..+..+++..|. +|++++.+++..+.+++
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHH
Confidence            45566788999999999765 7778888877788 99999999988777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	3e-42
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	1e-37
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-37
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-33
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	1e-32
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	2e-22
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-19
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	2e-19
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	3e-19
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-18
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	2e-18
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	7e-18
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	2e-17
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	2e-16
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	2e-15
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	7e-15
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	8e-15
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	4e-14
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	3e-13
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	4e-13
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-12
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	1e-12
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	5e-12
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	5e-12
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	2e-06
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	6e-06
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	9e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	4e-04
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	4e-04
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	8e-04
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	0.002

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  141 bits (357), Expect = 3e-42
 Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 1/199 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+V  +        + + 
Sbjct: 122 DVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESV 180

Query: 190 VGAAWRTANVEVGSTVVIF 208
             A     + +   TV+  
Sbjct: 181 NDAIDLMKHGKCIRTVLSL 199

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  130 bits (326), Expect = 1e-37
 Identities = 74/208 (35%), Positives = 108/208 (51%), Gaps = 12/208 (5%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +    +  P+ 
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVL-KEIIPSK 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C         
Sbjct: 61  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP +  N            
Sbjct: 121 GLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFL---------- 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAV 217
           V        +     ++  G G   + +
Sbjct: 170 VSTKLTLDQINKAFELLSSGQGVRSIMI 197

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  128 bits (322), Expect = 3e-37
 Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 1/197 (0%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP +  +     +       
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEIN 179

Query: 191 GAAWRTANVEVGSTVVI 207
            A     + +   TVV 
Sbjct: 180 KAFELMHSGKSIRTVVK 196

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  119 bits (298), Expect = 2e-33
 Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+         A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINAT-DPKKKAL 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC---SAFPFK 126
           FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC     F + 
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                  +  +     +G +I+HF+ VSSFS+YTV+  A++ +VD     +     +   
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180

Query: 187 STGVGAAWRTANVEVGSTVVI 207
            +   A      ++ G ++  
Sbjct: 181 ESINDAI---DLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  116 bits (292), Expect = 1e-32
 Identities = 73/200 (36%), Positives = 100/200 (50%), Gaps = 5/200 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSG-TLVTP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D          L   V   
Sbjct: 121 GTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFA---LDPLITHVLPF 176

Query: 190 VGAAWRTANVEVGSTVVIFG 209
                    +  G ++    
Sbjct: 177 EKINEGFDLLRSGESIRTIL 196

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 90.0 bits (222), Expect = 2e-22
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 3/191 (1%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
            AA+    G    +  + +  P   EV V+++ T +CH+D+     K      P +LGHE
Sbjct: 5   IAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHE 63

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G++E++G NV  +  GD V+  +   C +C  C +     CS F  +       +   
Sbjct: 64  GSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNH 122

Query: 138 RF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                 +G    HF + SSF+ Y +    + VKV    P ++             A    
Sbjct: 123 ALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAIDSR 182

Query: 197 ANVEVGSTVVI 207
             + +   + I
Sbjct: 183 KGITLKPIIKI 193

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 81.5 bits (200), Expect = 1e-19
 Identities = 49/196 (25%), Positives = 71/196 (36%), Gaps = 26/196 (13%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPR 72
           P   +AA+  A G PL I+EV V  P   +V V+I  + +CH+D+   +         P 
Sbjct: 3   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPF 62

Query: 73  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           I GHE +G V +VG  V  V EGD V IP     C  C  C +    LC +         
Sbjct: 63  IPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVN 122

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                     EY + D  +V  +   V           ++  + 
Sbjct: 123 GGYA----------------------EYVLADPNYVGILPKNVKATIHPGKLDDINQILD 160

Query: 192 AAWRTANVEVGSTVVI 207
              R   +E G  V+ 
Sbjct: 161 QM-RAGQIE-GRIVLE 174

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (201), Expect = 2e-19
 Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 20/200 (10%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPP--NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           P +       +  +     +   DP     H++ ++I    +C SD+            P
Sbjct: 4   PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMP 63

Query: 72  RILGHEAIGVVESVG-ENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            ++GHE +G V  +G ++  G+  G  V +   +  C EC  C++     C+ F    S 
Sbjct: 64  LVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQ 123

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                               +VS   ++ Y  +    VV +   +      +   GV   
Sbjct: 124 PYE---------------DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEA 168

Query: 190 VGAAWRTANVEVGSTVVIFG 209
                   +V    T+V + 
Sbjct: 169 F-ERMEKGDVRYRFTLVGYD 187

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 80.8 bits (198), Expect = 3e-19
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    V+P + GHE
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G V +VG+ V+    GD V +   +  C  C  C     N C       +   P +  
Sbjct: 62  IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPG 121

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP-NRACLLSCGVSTGVGAAWR 195
                              +S+  V+   +V+++        RA  ++      +    +
Sbjct: 122 HTLG--------------GYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVK 167

Query: 196 TANVEVGSTVV 206
              V    T+ 
Sbjct: 168 YRFVIDNRTLT 178

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 1e-18
 Identities = 40/85 (47%), Positives = 55/85 (64%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
            PP + CL+ CG STG GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGD 258
           +  +KFE     G TE ++ K+   
Sbjct: 62  LNKDKFEKAMAVGATECISPKDSTK 86

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.3 bits (192), Expect = 2e-18
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 28/202 (13%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P I
Sbjct: 2   GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 61

Query: 74  LGHEAIGVVESVGENVDGVVEGD-----VVIPHFLADCTECVGCRS-KKGNLCSAFPFKI 127
           LGHE  G V  V      +         +++ +    C EC  C+  K+  LC       
Sbjct: 62  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV-- 119

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGV 186
             +      S +  LRG           +S + VLD    V+KV   +       L    
Sbjct: 120 --YGINRGCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN 165

Query: 187 STGVGAAWRTANVEVGSTVVIF 208
                 A           V+++
Sbjct: 166 -----KALELMESREALKVILY 182

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 76.8 bits (188), Expect = 7e-18
 Identities = 36/83 (43%), Positives = 47/83 (56%)

Query: 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235
           P  +CL+ CG +TG GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV   
Sbjct: 2   PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 236 SEKFEIGKRFGVTEFVNSKNCGD 258
            +KF      G TE +N K+   
Sbjct: 62  KDKFPKAIELGATECLNPKDYDK 84

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 2e-17
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 29/201 (14%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK---DF 66
            A KP    + +   PG+ L ++   +  P  +EV +R+    +C SDV +W+     +F
Sbjct: 2   AAAKP-NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNF 59

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
               P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  F 
Sbjct: 60  IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC 119

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
            +P                         +   +   + A   K+   V P          
Sbjct: 120 ATPPDDG---------------------NLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEK 158

Query: 187 STGVGAAWRTANVEVGSTVVI 207
           +     A+ T    +G  +++
Sbjct: 159 AL---EAFETFKKGLGLKIML 176

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 36/84 (42%), Positives = 49/84 (58%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
              R CL+ CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGD 258
             EKF   K  G T+ +N +    
Sbjct: 62  NGEKFPKAKALGATDCLNPRELDK 85

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 70.8 bits (172), Expect = 2e-15
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P  + CL+ CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGD 258
             +KF   K  G TE VN ++   
Sbjct: 62  NKDKFAKAKEVGATECVNPQDYKK 85

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 68.9 bits (167), Expect = 7e-15
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 26/194 (13%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILG 75
           +A+     + L +++  +  P   EV +++    +C SDV +++   + DF    P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HEA G V  VG+NV  + +GD V       C  C  C+  K NLC    F  +P      
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD--- 119

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                              + + Y V       K+       +    S  +   V  A+ 
Sbjct: 120 ------------------GNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFE 160

Query: 196 TANVEVGSTVVIFG 209
            A  +  +T+ +  
Sbjct: 161 AARKKADNTIKVMI 174

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 68.8 bits (167), Expect = 8e-15
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 31/198 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSP------ 115

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                    +++EY ++     +     V P     +    +  
Sbjct: 116 ----------------RWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 190 VGAAWRTANVEVGSTVVI 207
                      +G  V+I
Sbjct: 160 AIDNLENFKA-IGRQVLI 176

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 66.8 bits (162), Expect = 4e-14
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           VP      L CG+ TG GA      V   S+ V +G G++GL+    A++CGA+ II VD
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 234 VISEKFEIGKRFGVTEFVNSKN 255
           ++  + E+ K+ G T  +NSK 
Sbjct: 61  IVESRLELAKQLGATHVINSKT 82

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 35/203 (17%), Positives = 58/203 (28%), Gaps = 33/203 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +        + L   E       S++  VR +  S C SD+              ILGHE
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
           A+G V  VG  V     GD VI          +  ++      +           +D   
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV- 119

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                             F EY  ++ A  ++      +P +    LS  V+        
Sbjct: 120 ------------------FGEYFHVNDADMNLAI----LPKDVD--LSKLVTHVYHGFDH 155

Query: 196 TANVEVGSTVVIFGLGSIGLAVA 218
                +   +++       L  A
Sbjct: 156 -----IEEALLLMKDKPKDLIKA 173

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 64.5 bits (156), Expect = 4e-13
 Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 26/217 (11%)

Query: 18  RAAIATAPGEPLVID------EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           R  +    G+  V        +        H V ++++ T++C SD    +     A   
Sbjct: 3   RGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQVG 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C           
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVC-------LTVN 114

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTG 189
           P      +  +              +EY ++  A  +++K+           ++  V   
Sbjct: 115 PARAGGAYGYVDMGDWTG-----GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQ 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA 226
           V +    A    G     F  G     V +  +   A
Sbjct: 170 VISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 42/84 (50%), Positives = 56/84 (66%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P ++ CLL CG+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGD 258
             +KF   K FG TE +N ++   
Sbjct: 62  NKDKFARAKEFGATECINPQDFSK 85

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 45/84 (53%), Positives = 54/84 (64%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P +  CLL CGVSTG GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGD 258
             +KFE  K FG T+FVN  +  +
Sbjct: 62  NPDKFEKAKVFGATDFVNPNDHSE 85

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 60.8 bits (146), Expect = 5e-12
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 28/194 (14%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           +AA      +PL I++V         +V VRI    +CH+D+   +      + P++   
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 77  EAIGVVESV---GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
                V  +    E V+G+ +GD VI H       C+ CR+ +   C    F        
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDG- 119

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
                                 F+E+       V+K+   V           ++  +   
Sbjct: 120 ---------------------GFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 194 WRTANVEVGSTVVI 207
            +   V +G  V+I
Sbjct: 159 EK-GEV-LGRAVLI 170

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 60.8 bits (146), Expect = 5e-12
 Identities = 46/194 (23%), Positives = 64/194 (32%), Gaps = 28/194 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRILGH 76
           +AA+     EPL I EV     +  EV VRI    +CH+D+             P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 77  EAIGVVESVGENVDGV-VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           E +G+VE VG  V  + V   V IP   + C  C  C S +  LC               
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---------- 111

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                         +     ++EY      +VVK+          L        V     
Sbjct: 112 ------------AGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINE---VFDRML 156

Query: 196 TANVEVGSTVVIFG 209
              +  G  V+   
Sbjct: 157 KGQIN-GRVVLTLE 169

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           +P   A +++  ++TG   A   A++E+GS+VV+ G+G++GL    GA+L GA RIIGV 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 234 VISEKFEIGKRFGVTEFVN 252
                 E  K +G T+ +N
Sbjct: 60  SRPICVEAAKFYGATDILN 78

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
              LS  + TG   A   A V  GSTV + G G +GLA A  ARL GA  +I  D+   +
Sbjct: 4   LTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 62

Query: 239 FEIGKRFGVTEFVNSKN 255
               K  G      S +
Sbjct: 63  LAHAKAQGFEIADLSLD 79

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 42.1 bits (98), Expect = 9e-06
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
          +A +    G PL + ++        EV +R+    L  +D           + P  +  
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG 214
             +  C  +T   A         G TVVI G G +G
Sbjct: 6   LAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLG 41

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           LS G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +   
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 242 GKRFGVTEFVNSKNC 256
            K  G    +     
Sbjct: 67  AKEIGADLVLQISKE 81

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 20/206 (9%), Positives = 41/206 (19%), Gaps = 44/206 (21%)

Query: 15  IQCRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           I  +A + T  GEP         E+  D    +EV V+ + + +  SD+   +       
Sbjct: 2   ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
                                    G         +       +             + P
Sbjct: 62  AKTTGF-------------------GTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIP 102

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                           L         P    ++A     G++  
Sbjct: 103 SHVNFG--------------------TWRTHALGNDDDFIKLPNPAQSKANGKPNGLTDA 142

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGL 215
                     +    +   G+ +   
Sbjct: 143 KSIETLYDGTKPLHELYQDGVANSKD 168

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           +P + A  L CG  T V +         G  V I GLG IG      ++         + 
Sbjct: 1   IPSHLAAPLLCGGLT-VYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVIS 58

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGD 258
             S K E   + G   ++ +   GD
Sbjct: 59  RSSRKREDAMKMGADHYIATLEEGD 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.98
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.95
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.91
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.91
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.79
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.77
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.75
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.75
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.75
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.75
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.71
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.71
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.7
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.69
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.69
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.69
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.66
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.66
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.64
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.64
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.64
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.63
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.63
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.62
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.61
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.58
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.58
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.56
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.55
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.55
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.53
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.44
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.43
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.28
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.14
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.99
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.97
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.81
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.72
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.64
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.64
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.62
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.61
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.58
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.55
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.53
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.53
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.5
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.48
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.41
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.38
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.35
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.32
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.31
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.29
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.24
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.23
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.23
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.2
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.16
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.09
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.06
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.01
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.95
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.93
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.93
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.9
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.88
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.85
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.85
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.83
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.78
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.75
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.71
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.71
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.7
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	95.68
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.66
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.66
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.56
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.56
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.49
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.49
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.47
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.43
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.43
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.41
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.37
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.22
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.17
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.02
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.02
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.99
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.84
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.82
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.73
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.63
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.62
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.55
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.52
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.49
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.41
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.4
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.37
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.28
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	94.28
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	94.27
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.94
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.89
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	93.89
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	93.86
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.69
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.66
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.64
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.6
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	93.56
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.56
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.5
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.46
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.39
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.19
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.18
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.95
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.92
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.7
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	92.69
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.59
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	92.44
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.4
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.18
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.17
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.05
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	92.02
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	91.97
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.74
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.61
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.59
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	91.4
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.33
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.3
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	91.27
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.24
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	91.14
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	91.1
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	91.02
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.0
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.99
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	90.9
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	90.75
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	90.7
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.67
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	90.64
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.58
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	90.47
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.41
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.33
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	90.08
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	90.0
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	89.92
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.82
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	89.8
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.77
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	89.69
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.68
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	89.64
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.6
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	89.6
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.56
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	89.52
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	89.48
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	89.46
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.38
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.29
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.27
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	89.2
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.14
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	88.92
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	88.88
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	88.82
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.79
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	88.78
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.73
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	88.65
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.64
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	88.58
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.53
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	88.41
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.38
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	88.34
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.3
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	88.22
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	88.2
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.19
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.18
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	88.09
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.05
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	88.03
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	88.0
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	87.91
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	87.34
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	87.3
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.25
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	87.15
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.13
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	87.01
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	86.94
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	86.92
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	86.85
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.81
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	86.56
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.53
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.5
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.45
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.44
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.39
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.3
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	86.3
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	86.2
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	86.14
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	86.13
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	86.1
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	86.01
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	85.89
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	85.88
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	85.74
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	85.57
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	85.51
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	85.41
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.33
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	85.17
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	84.9
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.89
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	84.82
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	84.67
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	84.66
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	84.55
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.48
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	84.16
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.11
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.1
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.07
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	84.0
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	83.98
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	83.83
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	83.67
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	83.62
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.4
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	83.37
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	83.32
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	83.3
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	83.13
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	83.12
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	82.97
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	82.9
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	82.75
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	82.64
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	82.61
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	82.55
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	82.34
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	82.24
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	82.19
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	81.94
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	81.9
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	81.88
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	81.62
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.36
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	81.22
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	81.12
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	81.12
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	81.0
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	80.64
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	80.56
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	80.37
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	80.2
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	80.14
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	80.02

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=2.9e-39  Score=271.16  Aligned_cols=196  Identities=35%  Similarity=0.562  Sum_probs=178.7

Q ss_pred             CCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC
Q 023561           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      ++++|+||+++.++++||+++|++.|+|+++|||||+.++|||++|++++.+......+|.++|||++|+|+++|+++.+
T Consensus         4 ~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v~~   83 (199)
T d1cdoa1           4 GKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTE   83 (199)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCCce
Confidence            46789999999999999999999999999999999999999999999999998777778999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      |++||||++.+..+|++|.+|+.+++++|++.......+...+|..++ ..+|..+.++++.|+|+||++++..+++++|
T Consensus        84 ~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP  162 (199)
T d1cdoa1          84 FQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAVAKID  162 (199)
T ss_dssp             CCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCE-EETTEEEEEGGGTCCSBSEEEEEGGGEEECC
T ss_pred             ecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccce-eeccceeecccccCCceEEEEEchHHEEECC
Confidence            999999999999999999999999999999988776666666664333 2466677777778999999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (280)
                      ++++++++|++.+++.|++.++......+.|++|||+
T Consensus       163 ~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         163 PSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             TTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            9999999999999999999998888899999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=264.81  Aligned_cols=196  Identities=38%  Similarity=0.595  Sum_probs=172.7

Q ss_pred             CCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCC
Q 023561           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        12 ~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      +.++||||++++++|++|+++++|+|+|+++||||||+++|||++|++++.|.++...+|.++|||++|+|+++|+++++
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence            56789999999999999999999999999999999999999999999999998777788999999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      +++||+|++.+..+|+.|..|+.|+++.|++.......+...+....+. ..|..+.++.+.|+|+||++++..+++++|
T Consensus        82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEccccccccccccccCccccCccccccccccccCCccceec-cCCcceecccccccceeEEEechHHEEECC
Confidence            9999999999999999999999999999998765544455544433321 346667777778999999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (280)
                      ++++++++|.+.+++.|++.++.....-+.+++|+|+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999976555556788999884

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=4.5e-37  Score=256.66  Aligned_cols=192  Identities=24%  Similarity=0.425  Sum_probs=161.0

Q ss_pred             cceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCC
Q 023561           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |++|+|+++.+.+++|++++++.|+|+++|||||+.++|||++|++++.|.++. ++|.++|||++|+|+++|+++++|+
T Consensus         1 ~k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~i~GHE~~G~V~~vG~~v~~~~   79 (194)
T d1f8fa1           1 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHEGSGIIEAIGPNVTELQ   79 (194)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             CceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc-cCCcccccceEEEeeecCccceeEc
Confidence            578999999999999999999999999999999999999999999999998764 6899999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccc-cccCCceeecccccceeeeeEEeecccEEEcCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~  172 (280)
                      +||||+.. ..+|+.|.+|+.|++++|++....+..|...+|...+ ....+....++.+.|+|+||.+++..+++++|+
T Consensus        80 vGDrVv~~-~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~  158 (194)
T d1f8fa1          80 VGDHVVLS-YGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  158 (194)
T ss_dssp             TTCEEEEC-CCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             cCceeeee-cccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCC
Confidence            99999655 5589999999999999999864443455555553332 223445566677778999999999999999999


Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEE
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  232 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~  232 (280)
                      +++++++                         +++.|+|++|++++|+++.+|++.|+++
T Consensus       159 ~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         159 DFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             TCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            9887654                         3456779999999999999999777765

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=2.5e-36  Score=253.77  Aligned_cols=195  Identities=37%  Similarity=0.585  Sum_probs=165.9

Q ss_pred             CCCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        10 ~~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      |.++++||||+++.++++||+++|+|+|+|+++||||||.++|||++|++++.|..+. .+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~v~GHE~~G~V~~vG~~V   80 (202)
T d1e3ia1           2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-LFPVVLGHECAGIVESVGPGV   80 (202)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC-CSSBCCCCEEEEEEEEECTTC
T ss_pred             CCCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc-ccccccccccceEEeeecCCc
Confidence            4567899999999999999999999999999999999999999999999999998763 679999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcC---C-CCCCCCCccccccCCceeecccccceeeeeEEeecc
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS---P-WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~---~-g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  165 (280)
                      +++++||||++.+...|+.|.+|+.|.+++|++......   . +...++..++ ..+|..+.++.+.|+|+||+++++.
T Consensus        81 ~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~v~~~~~~G~faey~~v~~~  159 (202)
T d1e3ia1          81 TNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRF-TCKGRSIYHFMGVSSFSQYTVVSEA  159 (202)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSE-EETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             eeccCCCEEEEEeeccccccccccCCcccccccccccccCccceeccccccccc-ccCceeeecccccCCceEEEEEehh
Confidence            999999999999999999999999999999998765211   0 1111122222 2467777788888999999999999


Q ss_pred             cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEEC
Q 023561          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (280)
Q Consensus       166 ~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G  209 (280)
                      +++++|++++++.++++.+++.+.+.++. .  +++|++|.|+.
T Consensus       160 ~l~~lP~~~~~~~~~~~~~~~~~~~~a~~-~--~k~G~~V~vi~  200 (202)
T d1e3ia1         160 NLARVDDEFDLDLLVTHALPFESINDAID-L--MKEGKSIRTIL  200 (202)
T ss_dssp             GEEECCTTSCGGGGEEEEEEGGGHHHHHH-H--HHTTCCSEEEE
T ss_pred             hEEECCCCCCHHHHHHHHHHHHHHHHHHH-h--CCCCCEEEEEE
Confidence            99999999999998888888888877543 2  46899988763

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=1.1e-36  Score=250.97  Aligned_cols=171  Identities=24%  Similarity=0.381  Sum_probs=153.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC---CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      +.|++++++++ |+++|++.|+|+++|||||++++|||++|++++.+....   ...|.++|||++|+|+++|+++++|+
T Consensus         2 ~maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~   80 (178)
T d1e3ja1           2 NLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK   80 (178)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCC
T ss_pred             ceEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCC
Confidence            45666788877 999999999999999999999999999999998875422   45789999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||||++.+..+|+.|..|..|..++|++..+.  .+...+|                   +|+||+++|+++++++|++
T Consensus        81 ~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (178)
T d1e3ja1          81 KGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDDG-------------------NLARYYVHAADFCHKLPDN  139 (178)
T ss_dssp             TTCEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBCC-------------------SCBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECcccccCCccccccCCccccccccce--ecccccc-------------------ccceeeeecccceeeCCCC
Confidence            999999999999999999999999999988763  2333455                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~  210 (280)
                      ++++++|++.+++.|+|++ ++.+++++|++|+|+|+
T Consensus       140 ~~~~~aa~~~~~~~ta~~a-~~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         140 CNVKQLVTHSFKLEQTVDA-FEAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCCGGGEEEEEEGGGHHHH-HHHHHHCCTTCSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHH-HHHhCCCCCCEEEEEcc
Confidence            9999999999999999996 57889999999999985

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.1e-35  Score=244.37  Aligned_cols=172  Identities=27%  Similarity=0.344  Sum_probs=154.6

Q ss_pred             CcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 023561           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      ++.||||++++++|++|++++++.|.|+++|||||+.+++||++|+++++|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~   81 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR   81 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence            6789999999999999999999999999999999999999999999999998754 568999999999999999999999


Q ss_pred             CCCCCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           92 VVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        92 ~~~Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      |++||||++.+. ..|+.|..|+.|.+++|++...   .|...+|                   +|+||+++++++++++
T Consensus        82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~~~g-------------------g~aey~~v~~~~~~~i  139 (175)
T d1llua1          82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYSVNG-------------------GYAEYVLADPNYVGIL  139 (175)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEEC
T ss_pred             cccCCEEEeccccccCCccccccCCcccccccccc---ccccccc-------------------ccceEEEechHHEEEC
Confidence            999999987665 5799999999999999999876   6766677                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (280)
                      |+++++..++++.+++.|++.++ +.. ..+|++|||+
T Consensus       140 Pd~l~~~~a~~~~~~~~t~~~~~-~~g-~~~G~~VLVl  175 (175)
T d1llua1         140 PKNVKATIHPGKLDDINQILDQM-RAG-QIEGRIVLEM  175 (175)
T ss_dssp             CTTCCCCEEEECGGGHHHHHHHH-HTT-CCSSEEEEEC
T ss_pred             CCCCChhHHHHHHhHHHHHHHHH-HhC-CCCCCEEEeC
Confidence            99999998888888888888753 444 4579999984

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=1.4e-35  Score=248.32  Aligned_cols=194  Identities=38%  Similarity=0.625  Sum_probs=162.1

Q ss_pred             CCCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        10 ~~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      ++.+.+||||++++++++||+++|+++|+|+++||||||.++|||++|++++.|..+. .+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~-~~P~i~GHE~~G~Vv~~G~~v   80 (198)
T d1p0fa1           2 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS-KFPVILGHEAVGVVESIGAGV   80 (198)
T ss_dssp             CTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc-ccccccceeeeeeeeecCccc
Confidence            4567789999999999999999999999999999999999999999999999998764 689999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      .++++||||++.+..+|+.|.+|+.+.+++|++.......|...++..++. ..+..+.++...|+|+||+.++...+++
T Consensus        81 ~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~faey~~v~~~~~~k  159 (198)
T d1p0fa1          81 TCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAK  159 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEE
T ss_pred             ccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEe-eCCeeccccCCCccceeeEEecHHHEEE
Confidence            999999999999999999999999999999999877654555555433332 3344555555568999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHH
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL  215 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~  215 (280)
                      +|++++...++...+.+.+..          ++++|+|.|+|++|+
T Consensus       160 ip~~~~~~~~~~~~~~~~~v~----------~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         160 IDPKINVNFLVSTKLTLDQIN----------KAFELLSSGQGVRSI  195 (198)
T ss_dssp             ECTTSCGGGGEEEEECGGGHH----------HHHHHTTTSSCSEEE
T ss_pred             CCCCCCHHHHHHhhcchhhcC----------CCCEEEEECCCcceE
Confidence            999999888776555544432          233477778777664

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=2.5e-35  Score=241.35  Aligned_cols=166  Identities=27%  Similarity=0.418  Sum_probs=152.7

Q ss_pred             eeeeecCCCCCcEEEEeecCCC-CCCeEEEEeeeeecChhhhhhhhcCCCC---CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           18 RAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        18 ~a~~~~~~g~~l~~~~~~~p~~-~~~eVlIkv~~~~i~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      ||++++++|+||++++++.|++ .++|||||+.+++||++|++++.|..+.   ..+|.++|||++|+|+++|+++++|+
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 6899999999999999999999887642   46799999999999999999999999


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||||++.+...|+.|..|+.|.+++|++..+   .|+..+|                   +|+||++++.++++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceeeccc-------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999998876   5666677                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEE
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI  207 (280)
                      ++++.++++.+++.|+|+++ +..++ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99988888888999999975 66777 8999998

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=1.6e-34  Score=241.91  Aligned_cols=194  Identities=36%  Similarity=0.582  Sum_probs=163.9

Q ss_pred             CCCCcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        10 ~~~~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      |.++.+||||+++.++++||+++|++.|+|+++||||||.++|||++|++++.|.++. .+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~-~~P~i~GHE~~G~Vv~vG~~v   80 (198)
T d2jhfa1           2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGV   80 (198)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc-ccceecccceeEEEEecCccc
Confidence            4567899999999999999999999999999999999999999999999999998764 689999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  169 (280)
                      +++++||||++.+..+|+.|..|+.+..+.|++.......|...++... ...++..+.++.+.|+|+||++++..++++
T Consensus        81 ~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~  159 (198)
T d2jhfa1          81 TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSR-FTCRGKPIHHFLGTSTFSQYTVVDEISVAK  159 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCS-EEETTEEEBCSTTTCCSBSEEEEEGGGEEE
T ss_pred             cCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCcccc-ccccCceeccCCCCCcccCeEEeCHHHeEE
Confidence            9999999999999999999999999999999998876555544444222 235666777777789999999999999999


Q ss_pred             cCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE
Q 023561          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (280)
Q Consensus       170 iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (280)
                      +|+.++++.++...+++.+...+   ...+++|++|+|+
T Consensus       160 ~p~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi  195 (198)
T d2jhfa1         160 IDAAFALDPLITHVLPFEKINEG---FDLLRSGESIRTI  195 (198)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEE
Confidence            99999887776655454443321   2235788998886

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-34  Score=239.39  Aligned_cols=176  Identities=23%  Similarity=0.331  Sum_probs=147.6

Q ss_pred             CcceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCC--
Q 023561           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD--   90 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~--   90 (280)
                      |.+++||+++.+++++|+++++++|+|+++||||||.++|||++|++++.|.++...+|.++|||++|+|+++|++++  
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~   80 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDL   80 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccc
Confidence            457899999999999999999999999999999999999999999999999887778999999999999999999986  


Q ss_pred             ---CCCCCCEEEecCCCCCCCChhhcCCCC-CCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEee-cc
Q 023561           91 ---GVVEGDVVIPHFLADCTECVGCRSKKG-NLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IA  165 (280)
Q Consensus        91 ---~~~~Gd~V~~~~~~~c~~c~~c~~g~~-~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~  165 (280)
                         .+++||+|++.+..+|+.|.+|+.|.+ +.|++...   +|+...- ..+          ...+|+|+||++++ ..
T Consensus        81 ~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~~~-~~~----------~~~~Gg~ae~~~v~~~~  146 (184)
T d1vj0a1          81 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC-SEY----------PHLRGCYSSHIVLDPET  146 (184)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS-SST----------TCCCSSSBSEEEECTTC
T ss_pred             ccccccceeeeEeccccccccChhHhCccccccCCCcee---eccCCCC-CCC----------CCcceeCcCcEEechhH
Confidence               468999999999999999999999985 56887664   4442210 000          11135999999995 67


Q ss_pred             cEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEEC
Q 023561          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (280)
Q Consensus       166 ~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G  209 (280)
                      +++++|+++++++      ++++|+.+ .+++++++|++|||+-
T Consensus       147 ~v~~ip~~l~~~~------pl~~A~~a-~~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         147 DVLKVSEKITHRL------PLKEANKA-LELMESREALKVILYP  183 (184)
T ss_dssp             CEEEECTTCCEEE------EGGGHHHH-HHHHHHTSCSCEEEEC
T ss_pred             cEEECCCCCCHHH------HHHHHHHH-HHHhCCCcCCEEEEee
Confidence            9999999999753      34567775 4778999999999973

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=236.80  Aligned_cols=171  Identities=24%  Similarity=0.369  Sum_probs=148.6

Q ss_pred             ceeeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC---CCCCCcccccceeEEEEEeCCCCCC
Q 023561           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        15 ~~~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      .+++|++++++++ |+++|++.|+|+++||||||.++|||++|++++.+...   ...+|.++|||++|+|+++|+++++
T Consensus         6 p~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~   84 (185)
T d1pl8a1           6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (185)
T ss_dssp             CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             CCCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceee
Confidence            3678999999987 99999999999999999999999999999999986432   2467899999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCC-CCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      |++||||++.+..+|+.|.+|+.|++++|++..+   .|. ..+|                   +|+||++++.++++++
T Consensus        85 ~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~G-------------------~~aey~~~~~~~~~~l  142 (185)
T d1pl8a1          85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG-------------------NLCRFYKHNAAFCYKL  142 (185)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC-------------------SCBSEEEEEGGGEEEC
T ss_pred             ecccccceecceeccccchhhccchhchhcccee---eecccccc-------------------cceEEEEEchHHEEEC
Confidence            9999999999999999999999999999998776   333 2345                   8999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccH
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS  212 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~  212 (280)
                      |+++++++|++++  +++++.+ ++..+.++|++||| |+|+
T Consensus       143 P~~~~~~~aa~~p--l~~a~~a-~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         143 PDNVKPLVTHRFP--LEKALEA-FETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             CTTCGGGEEEEEE--GGGHHHH-HHHHHTTCCSEEEE-ECCT
T ss_pred             CCCCCHHHHHHHH--HHHHHHH-HHHhCCCCCCEEEE-EeCC
Confidence            9999999987654  5566664 56778899999998 5443

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=234.74  Aligned_cols=180  Identities=19%  Similarity=0.265  Sum_probs=151.3

Q ss_pred             CcceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC-
Q 023561           13 KPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV-   89 (280)
Q Consensus        13 ~~~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v-   89 (280)
                      .|.+|||+++.++++.  +++++++.++++++|||||+.++|||++|++++.|.++...+|+++|||++|+|+++|+++ 
T Consensus         3 ~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v~   82 (192)
T d1piwa1           3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (192)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhcccccc
Confidence            4678999999887753  7788888777899999999999999999999999988777889999999999999999987 


Q ss_pred             CCCCCCCEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEE
Q 023561           90 DGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  168 (280)
                      +.+++||||.+.+. ..|+.|.+|+.|++++|++..... .+...+|              ...+|+|+||+++++.+++
T Consensus        83 ~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~-~~~~~~G--------------~~~~Ggfaey~~v~~~~~~  147 (192)
T d1piwa1          83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTY-SQPYEDG--------------YVSQGGYANYVRVHEHFVV  147 (192)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESS-SCBCTTS--------------CBCCCSSBSEEEEEGGGEE
T ss_pred             cccCCCCeeeEeeeccCCCCchhhhcCCccccccccccc-ccccccc--------------cccccceeeEEEeehHHeE
Confidence            56999999977665 579999999999999999876531 1111222              2223499999999999999


Q ss_pred             EcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE
Q 023561          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (280)
Q Consensus       169 ~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (280)
                      ++|+++++++|+.+.+.+.|||+++ +..++++|++|+|.
T Consensus       148 ~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         148 PIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             ECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            9999999988777665677999865 78999999999985

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=9e-35  Score=239.08  Aligned_cols=170  Identities=18%  Similarity=0.087  Sum_probs=142.3

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||+++.++++ ++++|+|.|+|+++|||||++++|||++|++++.+..+...+|.++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            89999999998 99999999999999999999999999999988876665567899999999999999999999999999


Q ss_pred             EEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec--ccEEEcCCCC
Q 023561           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI--AHVVKVDPTV  174 (280)
Q Consensus        97 ~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~iP~~l  174 (280)
                      ||++.+..+|++|.+|+.+..++|.+......+|...+|                   +|+||+++|.  .+++++|+++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G-------------------~~aEy~~vp~a~~~l~~iP~~~  140 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG-------------------VFGEYFHVNDADMNLAILPKDV  140 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC-------------------SSBSSEEESSHHHHCEECCTTS
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCCCCh-------------------hcCeeEEEEhhhCeEEECCCCc
Confidence            999999999999999999999999887643334444556                   9999999985  4799999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHH
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAV  217 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a  217 (280)
                      ++++++.......++   +        ++.++++|+|++|+.+
T Consensus       141 ~~~~~~~~~~~~~~~---~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         141 DLSKLVTHVYHGFDH---I--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             CGGGGEEEEEESGGG---H--------HHHHHHHHHCCTTCSE
T ss_pred             chHHHHHHHHHHHHH---h--------cCceEEECCCHHHhhe
Confidence            998877644332222   1        2336666777666543

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.4e-33  Score=229.01  Aligned_cols=167  Identities=25%  Similarity=0.399  Sum_probs=143.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCC--------CCCCCcccccceeEEEEEeCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------PAVFPRILGHEAIGVVESVGEN   88 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~--------~~~~p~i~G~e~~G~V~~vG~~   88 (280)
                      |||++++++|+||+++|++.|+|+++|||||+.++|||++|+++++|.++        ...+|+++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            89999999999999999999999999999999999999999999998653        2368999999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeeccc-E
Q 023561           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-V  167 (280)
Q Consensus        89 v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~  167 (280)
                      +.+|++||+|++.+...|+.|.+|+.+++++|++...   +|+..+|                   +|+||++++... +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeecccc-------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999998875   5666777                   999999997654 5


Q ss_pred             EEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEE
Q 023561          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (280)
Q Consensus       168 ~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI  207 (280)
                      +++|+..+.+.|+....++.+++.+ .+..+. .|++|||
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~a~~~-~~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRRVKPMITKTMKLEEANEAIDN-LENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSSSCCCCEEEEEGGGHHHHHHH-HHTTCC-CSEEEEE
T ss_pred             EECCCCChHHHHHHHHHHHHHHHHH-HHhhcc-cCCceEC
Confidence            6666554444444445688888885 456665 5899987

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=7.5e-33  Score=226.30  Aligned_cols=168  Identities=27%  Similarity=0.345  Sum_probs=145.1

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCC-CCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~-~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||++++++|++|++++++.|+|+++|||||++++|||++|++++++.. ....+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            8999999999999999999999999999999999999999999988654 335789999999999999999999999999


Q ss_pred             CEEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCC
Q 023561           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (280)
Q Consensus        96 d~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~l  174 (280)
                      |||++.+. ..|+.|..|+.+..+.|.+...   .|...+|                   +|+||+++++++++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---cceeccC-------------------ccccceEecHHHEEECCCCC
Confidence            99987665 4578999999999999999875   5666666                   99999999999999999999


Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~  210 (280)
                      +++.|+ +. .+.+++.++ ....+ +|++|||+|.
T Consensus       139 ~~e~A~-l~-~~~~~~~~~-~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         139 IIEVQP-LE-KINEVFDRM-LKGQI-NGRVVLTLED  170 (171)
T ss_dssp             CEEEEE-GG-GHHHHHHHH-HTTCC-SSEEEEECCC
T ss_pred             CHHHHH-HH-HHHHHHHHH-HhcCC-CCCEEEEeCC
Confidence            986655 44 456676654 34455 5999999984

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.2e-35  Score=249.11  Aligned_cols=191  Identities=18%  Similarity=0.228  Sum_probs=152.9

Q ss_pred             eeeeeecCCCCCcEEEEeecCCC-------CCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPP-------NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~-------~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v   89 (280)
                      +||++++++++ ++++|++.|++       .++|||||+.+++||++|++++.|..+. .+|.++|||++|+|+++|+++
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~-~~P~v~GHE~~G~Vv~vG~~V   79 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA-QVGLVLGHEITGEVIEKGRDV   79 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC-CTTCBCCCCEEEEEEEECTTC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc-ccceeccceeeeeeecccccc
Confidence            69999999998 99999999865       4699999999999999999999998764 689999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeec--ccE
Q 023561           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI--AHV  167 (280)
Q Consensus        90 ~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~  167 (280)
                      ++|++||||++.+..+|++|..|+.|+++.|.........+.....  ..          ....|+|+||+++|.  .++
T Consensus        80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~--~~----------~~~~Gg~aeyv~vp~~~~~l  147 (201)
T d1kola1          80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYV--DM----------GDWTGGQAEYVLVPYADFNL  147 (201)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCT--TS----------CCBCCCSBSEEEESSHHHHC
T ss_pred             ccccccceeEEeeeeeccCChhhhCCCccccccccccccccccccc--CC----------CccccccccEEEeehHHCeE
Confidence            9999999999999999999999999999999776433222211100  00          011359999999974  479


Q ss_pred             EEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC
Q 023561          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  226 (280)
Q Consensus       168 ~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~  226 (280)
                      +++|++.++.+++.+.+++.++++++ ...+.+.+    ++|+|++|++++|+||++|+
T Consensus       148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            99999877777777777777777643 33333333    24889999999999998875

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=3.2e-32  Score=224.16  Aligned_cols=160  Identities=21%  Similarity=0.325  Sum_probs=132.2

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   96 (280)
                      |||++.+.+++||+++|++.|+|+++|||||+.++|||++|++++.|..+...+|.++|||++|+|+++|++++++++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            79999999999999999999999999999999999999999999999887778899999999999999999999999999


Q ss_pred             EEEecCC-CCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           97 VVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        97 ~V~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      +|.+.+. .+|++|.+|+.|++++|++..... .+.....             .....|+|+||+++++++++++|+...
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~-------------~~~~~GgfaEy~~v~~~~~~~ip~~~~  146 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTY-NSPTPDE-------------PGHTLGGYSQQIVVHERYVLRIRVADI  146 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBCSST-------------TSBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred             EEEEcccccccCccccccCcccccCCCccccc-cccCCCC-------------CcccccccceEEEechHHEEECCCCCc
Confidence            9977665 589999999999999999865421 1111100             011235999999999999999996654


Q ss_pred             hhhhcccchhhHHHHHHH
Q 023561          176 PNRACLLSCGVSTGVGAA  193 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l  193 (280)
                      ....+   .++.++++++
T Consensus       147 ~~~~a---~~l~~a~~a~  161 (179)
T d1uufa1         147 EMIRA---DQINEAYERM  161 (179)
T ss_dssp             EEECG---GGHHHHHHHH
T ss_pred             ChhHh---chhHHHHHHH
Confidence            33222   3566777754

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.4e-29  Score=200.33  Aligned_cols=145  Identities=18%  Similarity=0.272  Sum_probs=130.1

Q ss_pred             eeeeeeecCCCCC--cEEE-EeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 023561           16 QCRAAIATAPGEP--LVID-EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        16 ~~~a~~~~~~g~~--l~~~-~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      .|||++++++|+|  |+++ +++.|+|+++||||||++++||++|.+.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA   81 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence            5899999999876  7775 68999999999999999999999999999987755 467899999999999999999999


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      |++||||+..+                             ..+|                   +|+||++++.++++++|
T Consensus        82 ~~vGdrV~~~~-----------------------------~~~G-------------------~~ae~~~v~~~~~~~iP  113 (150)
T d1yb5a1          82 FKKGDRVFTSS-----------------------------TISG-------------------GYAEYALAADHTVYKLP  113 (150)
T ss_dssp             CCTTCEEEESC-----------------------------CSSC-------------------SSBSEEEEEGGGEEECC
T ss_pred             cccCccccccc-----------------------------cccc-------------------ccccccccccccccccc
Confidence            99999997432                             1223                   89999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (280)
                      +++++++||++++...|+|.+++.......|+++||+
T Consensus       114 ~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         114 EKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999999999999999999899999999999874

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.6e-27  Score=189.89  Aligned_cols=141  Identities=19%  Similarity=0.202  Sum_probs=121.8

Q ss_pred             eeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        18 ~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      +.+.++++|.|  |++++++.|+|+++|||||+++++||++|+++++|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            45788899987  9999999999999999999999999999999999998777889999999999999999999999999


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |||+..                             ....                   |+|+||++++.+.++++|++++
T Consensus        82 drV~~~-----------------------------~~~~-------------------G~~ae~~~v~~~~~~~~P~~~~  113 (147)
T d1qora1          82 DRVVYA-----------------------------QSAL-------------------GAYSSVHNIIADKAAILPAAIK  113 (147)
T ss_dssp             CEEEES-----------------------------CCSS-------------------CCSBSEEEEEGGGEEECCTTSC
T ss_pred             ceeeee-----------------------------cccc-------------------ccceeEEEEehHHeEEcCcccc
Confidence            999621                             1112                   3899999999999999999998


Q ss_pred             hhhh--cccchhhHHHHHHHHHHcCCCCCCEEEE
Q 023561          176 PNRA--CLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (280)
Q Consensus       176 ~~~a--a~l~~~~~ta~~~l~~~~~~~~g~~VlI  207 (280)
                      +.++  +++++...++++++++ .++++|++|||
T Consensus       114 ~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1         114 VDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            8754  4456666777776654 67899999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=2.9e-28  Score=195.24  Aligned_cols=149  Identities=19%  Similarity=0.125  Sum_probs=126.5

Q ss_pred             cceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCC
Q 023561           14 PIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~   90 (280)
                      |.+|||+++.+++++  +++++++.|+|++|||||||+++|||++|++++.|..+. ...|.++|||++|+|++  ..+.
T Consensus         1 m~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~   78 (152)
T d1xa0a1           1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHP   78 (152)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSS
T ss_pred             CCceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCC
Confidence            568999999999886  558899999999999999999999999999999887654 46899999999999999  5567


Q ss_pred             CCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEc
Q 023561           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (280)
Q Consensus        91 ~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i  170 (280)
                      .|++||+|+....                        ..+...+|                   +|+||+++|.++++++
T Consensus        79 ~~~~g~~v~~~~~------------------------~~~~~~~G-------------------~~aEy~~v~~~~~~~i  115 (152)
T d1xa0a1          79 RFREGDEVIATGY------------------------EIGVTHFG-------------------GYSEYARLHGEWLVPL  115 (152)
T ss_dssp             SCCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSEEEECGGGCEEC
T ss_pred             ccccCCEEEEecC------------------------ccccccCC-------------------CcceeeeehhhccccC
Confidence            8999999964321                        12223334                   9999999999999999


Q ss_pred             CCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEEC
Q 023561          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (280)
Q Consensus       171 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G  209 (280)
                      |++++ .+||+++++..|+|.++....+++ |++|||+|
T Consensus       116 P~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         116 PKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             CTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            99998 478888889899998888888876 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=9.7e-28  Score=187.33  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=116.0

Q ss_pred             eeeeeecCCCCCcEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCCCC
Q 023561           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (280)
Q Consensus        17 ~~a~~~~~~g~~l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   95 (280)
                      |||++++++|+++++++++.|+|+++|||||++++|||++|++++.|.++. ..+|.++|||++|+|+           |
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~Vv-----------G   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEeec-----------c
Confidence            799999999999999999999999999999999999999999999998755 4689999999999993           9


Q ss_pred             CEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCCCC
Q 023561           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (280)
Q Consensus        96 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~ls  175 (280)
                      |+|+..                              ..+|                   +|+||+.+++++++++|++++
T Consensus        70 d~V~~~------------------------------~~~G-------------------~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAAL------------------------------VPQG-------------------GLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEE------------------------------CSSC-------------------CSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEE------------------------------eccC-------------------ccceeeeeCHHHeEEccCCCC
Confidence            999633                              2233                   899999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~  208 (280)
                      +++||++.+++.|||+++.++.  +.|++||++
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999876655  458999863

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.5e-25  Score=175.88  Aligned_cols=130  Identities=14%  Similarity=0.029  Sum_probs=110.4

Q ss_pred             eeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCCCC
Q 023561           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (280)
Q Consensus        17 ~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   93 (280)
                      |||+++.+++++  +++++++.|+|+++||||||.++|||++|.....|.++. ..+|.++|+|++|+|+++|.+  .++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~~--~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDP--RFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECST--TCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeeccC--Ccc
Confidence            899999998876  788999999999999999999999999999999998754 467999999999999998764  799


Q ss_pred             CCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcCCC
Q 023561           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (280)
Q Consensus        94 ~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~  173 (280)
                      +||+|+....                        ..|...+|                   +|+||+++|.++++++|++
T Consensus        79 ~g~~v~~~~~------------------------~~g~~~~G-------------------~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGW------------------------GVGENHWG-------------------GLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECT------------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeecc------------------------cceecCCC-------------------cceeeeeeeeeeEEECCCC
Confidence            9999975421                        13334445                   9999999999999999999


Q ss_pred             CChhhhcccchhhHHHHH
Q 023561          174 VPPNRACLLSCGVSTGVG  191 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~  191 (280)
                      +|+++||+++++..||+.
T Consensus       116 ls~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             SCCEEECGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999988888754

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=9.3e-27  Score=188.29  Aligned_cols=150  Identities=17%  Similarity=0.143  Sum_probs=124.6

Q ss_pred             ceeeeeeecCCCCC--cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC-CCCCcccccceeEEEEEeCCCCCC
Q 023561           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (280)
Q Consensus        15 ~~~~a~~~~~~g~~--l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~   91 (280)
                      .+|||+++.+++++  |++++++.|+|++|||||||+++|||++|++.+.|.++. ...|.++|+|++|+|++  +.+.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            57999999987765  999999999999999999999999999999999988764 35678999999999998  55678


Q ss_pred             CCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccEEEcC
Q 023561           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (280)
Q Consensus        92 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP  171 (280)
                      +++||+|.....                        ..|...+|                   +|+||+++|+++++++|
T Consensus        80 ~~~g~~v~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSY------------------------ELGVSRDG-------------------GLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeec------------------------cceecccc-------------------ccceEEEecHHHEEECC
Confidence            999999975432                        13444455                   99999999999999999


Q ss_pred             CCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc
Q 023561          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (280)
Q Consensus       172 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~  210 (280)
                      +++|+++||.+++...|+|.++. ......+++|||.|+
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRI  154 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECC
Confidence            99999999999999999987432 223344577887776

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.91  E-value=6.7e-27  Score=190.92  Aligned_cols=156  Identities=19%  Similarity=0.119  Sum_probs=127.1

Q ss_pred             cceeeeeeecCCCCC---cE--EEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCC----------CCCCcccccce
Q 023561           14 PIQCRAAIATAPGEP---LV--IDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----------AVFPRILGHEA   78 (280)
Q Consensus        14 ~~~~~a~~~~~~g~~---l~--~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~----------~~~p~i~G~e~   78 (280)
                      |.|+||+++.++|+|   |+  ..++|.|+|+++||||||++++||++|+++++|..+.          ...|.++|+|+
T Consensus         1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            678999999999986   44  4567778889999999999999999999999987643          24678999999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeee
Q 023561           79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (280)
Q Consensus        79 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~  158 (280)
                      +|+|+++|.++..++.||+|....                             ...                   |+|+|
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~-----------------------------~~~-------------------g~~ae  112 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSH-----------------------------VNF-------------------GTWRT  112 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESS-----------------------------SCC-------------------CCSBS
T ss_pred             ccccccccccccccccccceeccc-----------------------------ccc-------------------ccccc
Confidence            999999999999999999996332                             112                   38999


Q ss_pred             eEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHH-HcCCCCCCEEEEEC-c-cHHHHHHHH
Q 023561          159 YTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFG-L-GSIGLAVAE  219 (280)
Q Consensus       159 ~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlI~G-~-g~~G~~a~~  219 (280)
                      |+++++.+++++|++++.+.++.  +...|+|+++.. ...+++|++|||.| + |++|.+++|
T Consensus       113 y~~v~~~~~~~iP~~~~~~~a~~--~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         113 HALGNDDDFIKLPNPAQSKANGK--PNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTC--SCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eeeehhhhccCCCccchhhhhcc--chHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            99999999999999876555543  466788876543 35789999999997 4 678887665

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2e-19  Score=146.45  Aligned_cols=101  Identities=16%  Similarity=0.158  Sum_probs=93.6

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+..|+ +|++++++++|+++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999999999999999888889999999999987 8899999999999999 8999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEEec
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTISVS  279 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~~~  279 (280)
                      +++   +++.+.++++|+| +++ +++|
T Consensus        80 ~~~---~d~~~~v~~~t~g~g~d-~v~d  103 (179)
T d1qora2          80 YRE---EDLVERLKEITGGKKVR-VVYD  103 (179)
T ss_dssp             TTT---SCHHHHHHHHTTTCCEE-EEEE
T ss_pred             CCC---CCHHHHHHHHhCCCCeE-EEEe
Confidence            988   9999999999999 664 4444

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=140.95  Aligned_cols=100  Identities=22%  Similarity=0.253  Sum_probs=92.9

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +||+++++++|+++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5899999999999999999888899999999999997 9999999999999999 8999988999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++   +++.+.+++.+++ ++|.+.
T Consensus        80 ~~~---~~~~~~i~~~t~~~g~d~v~  102 (174)
T d1yb5a2          80 HRE---VNYIDKIKKYVGEKGIDIII  102 (174)
T ss_dssp             TTS---TTHHHHHHHHHCTTCEEEEE
T ss_pred             ccc---ccHHHHhhhhhccCCceEEe
Confidence            988   8999999999999 665443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.75  E-value=4.5e-18  Score=138.19  Aligned_cols=103  Identities=38%  Similarity=0.613  Sum_probs=88.3

Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++.+||++.|.+.|+|+++++..++++|++|+|+|+|++|++++|+++++|+++|++++++++|+++++++|+++++|+.
T Consensus         1 ~P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~   80 (174)
T d1p0fa2           1 APLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPK   80 (174)
T ss_dssp             CCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCC
Confidence            35679999999999999988899999999999999999999999999999998999999999999999999999999987


Q ss_pred             CCCCccHHHHHHHhcCCCceEEEe
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      + .+....+..++.+++|+|.++.
T Consensus        81 ~-~d~~~~~~~~~~~~~G~d~vid  103 (174)
T d1p0fa2          81 D-YDKPIYEVICEKTNGGVDYAVE  103 (174)
T ss_dssp             G-CSSCHHHHHHHHTTSCBSEEEE
T ss_pred             C-chhHHHHHHHHhcCCCCcEEEE
Confidence            5 1223444455555558877654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.75  E-value=6.3e-18  Score=137.21  Aligned_cols=102  Identities=32%  Similarity=0.539  Sum_probs=94.6

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      ++++.|+.++|.+.|+|+++++..++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|+++++|+
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            35778999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCceEEEe
Q 023561          254 KNCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      ++   +++.+.+++++++|+|.++.
T Consensus        81 ~~---~~~~~~i~~~t~gg~D~vid  102 (174)
T d1f8fa2          81 KT---QDPVAAIKEITDGGVNFALE  102 (174)
T ss_dssp             TT---SCHHHHHHHHTTSCEEEEEE
T ss_pred             CC---cCHHHHHHHHcCCCCcEEEE
Confidence            87   89999999999988866653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.75  E-value=3.6e-18  Score=138.82  Aligned_cols=100  Identities=31%  Similarity=0.494  Sum_probs=92.7

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +|+++|+.++++++|+|++ .+..++++|++|+|+|+|++|++++|++|.+|+++|++++.+++|+++++++|+++++|+
T Consensus         1 ip~e~A~~l~~~~~ta~~a-~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHG-AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHH-HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHH-HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            5789999999999999997 577999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEE
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++   +++.+.++++++| |+|.+.
T Consensus        80 ~~---~~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          80 KN---GHIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             GG---SCHHHHHHHHTTTSCEEEEE
T ss_pred             cc---hhHHHHHHHHhhccCcceEE
Confidence            87   8899999999999 776554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.75  E-value=5.2e-18  Score=137.51  Aligned_cols=103  Identities=45%  Similarity=0.749  Sum_probs=89.4

Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++++||+++|++.|+|+++.+..++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            56889999999999999988889999999999999999999999999999998999999999999999999999999986


Q ss_pred             CCCCccHHHHHHHhcCCCceEEEe
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      + ..++..+.+++.+++|+|.++.
T Consensus        82 ~-~~~~~~~~~~~~~~~g~D~vid  104 (176)
T d2fzwa2          82 D-FSKPIQEVLIEMTDGGVDYSFE  104 (176)
T ss_dssp             G-CSSCHHHHHHHHTTSCBSEEEE
T ss_pred             c-hhhHHHHHHHHHcCCCCcEeee
Confidence            5 2245555666666668766553

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.74  E-value=3.7e-18  Score=138.96  Aligned_cols=103  Identities=41%  Similarity=0.670  Sum_probs=91.0

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      .++++||.++|.+.|+|+++.+..++++|++|+|+|+|++|++++|+++.+|+.+||+++.+++|+++++++|+++++|+
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~   81 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISP   81 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECG
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECc
Confidence            35889999999999999998899999999999999999999999999999998899999999999999999999999998


Q ss_pred             CCCCCccHHHHHHHhcCC-CceEEEe
Q 023561          254 KNCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      .+  .+...+.+.+.+.+ |+|.+..
T Consensus        82 ~~--~~~~~~~~~~~~~g~G~d~vi~  105 (176)
T d1d1ta2          82 KD--STKPISEVLSEMTGNNVGYTFE  105 (176)
T ss_dssp             GG--CSSCHHHHHHHHHTSCCCEEEE
T ss_pred             cc--cchHHHHHHHHhccccceEEEE
Confidence            75  23445667776766 8876654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.71  E-value=4.3e-17  Score=132.36  Aligned_cols=103  Identities=39%  Similarity=0.633  Sum_probs=87.3

Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++++||.+.|.+.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|+++++|+.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            46789999999999999988899999999999999999999999999999998999999999999999999999999876


Q ss_pred             CCCCccHHHHHHHhcCCCceEEEe
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      + .++...+..++..++|+|.++.
T Consensus        82 ~-~~~~~~~~~~~~~~~G~d~vie  104 (174)
T d1e3ia2          82 E-LDKPVQDVITELTAGGVDYSLD  104 (174)
T ss_dssp             G-CSSCHHHHHHHHHTSCBSEEEE
T ss_pred             c-chhhhhhhHhhhhcCCCcEEEE
Confidence            5 1233444444444458766553

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=2.2e-17  Score=134.55  Aligned_cols=97  Identities=23%  Similarity=0.277  Sum_probs=89.9

Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +|||++++++.|||+++++..++++|++|||+|+ |++|++++|+|+.+|+ +++++.++++|+++++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            4789999999999999999999999999999997 9999999999999999 8888888999999999999999999988


Q ss_pred             CCCccHHHHHHHhcCC-CceEEE
Q 023561          256 CGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       256 ~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                         +++.+.+++.+++ |+|.+.
T Consensus        80 ---~~~~~~v~~~t~~~g~d~v~   99 (183)
T d1pqwa_          80 ---VDFADEILELTDGYGVDVVL   99 (183)
T ss_dssp             ---STHHHHHHHHTTTCCEEEEE
T ss_pred             ---cCHHHHHHHHhCCCCEEEEE
Confidence               8999999999998 775554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=3.4e-17  Score=133.62  Aligned_cols=102  Identities=21%  Similarity=0.203  Sum_probs=88.8

Q ss_pred             hhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +..+|.+.|++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|+++++|+++
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~   82 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence            45678888999999998878889999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCccHHHHHHHhcCC-CceEEE
Q 023561          256 CGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       256 ~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      .+..++.+.+++++++ |+|.|.
T Consensus        83 ~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          83 TSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             SCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             cchHHHHHHHHHhhCCCCceEEe
Confidence            2223455668888988 776554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.69  E-value=1e-16  Score=129.98  Aligned_cols=103  Identities=41%  Similarity=0.673  Sum_probs=87.4

Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++++||+++|++.|+|+++.+..++++|++|+|+|+|++|++++++++.+|+.+|++++++++|+++++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            56789999999999999998999999999999999999999999999999988999999999999999999999999875


Q ss_pred             CCCCccHHHHHHHhcCCCceEEEe
Q 023561          255 NCGDKSVSQVLLSIYDLPLLTISV  278 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~gg~~~v~~  278 (280)
                      + .++...+.+.+..++|+|.++.
T Consensus        82 ~-~~~~~~~~~~~~~~~G~D~vid  104 (176)
T d2jhfa2          82 D-YKKPIQEVLTEMSNGGVDFSFE  104 (176)
T ss_dssp             G-CSSCHHHHHHHHTTSCBSEEEE
T ss_pred             C-chhHHHHHHHHHhcCCCCEEEe
Confidence            4 1233444444444458866554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.69  E-value=1.5e-16  Score=127.65  Aligned_cols=94  Identities=20%  Similarity=0.307  Sum_probs=86.7

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +|+++||+++|++.|+|+++ ++.++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57899999999999999975 56899999999999999999999999999998 89999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCC
Q 023561          254 KNCGDKSVSQVLLSIYDLP  272 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg  272 (280)
                      .+   +++.+.+++.+.++
T Consensus        79 ~~---~~~~~~~~~~~~g~   94 (166)
T d1llua2          79 RQ---EDPVEAIQRDIGGA   94 (166)
T ss_dssp             TT---SCHHHHHHHHHSSE
T ss_pred             cc---hhHHHHHHHhhcCC
Confidence            88   88888888877653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.69  E-value=7.7e-17  Score=130.46  Aligned_cols=101  Identities=47%  Similarity=0.698  Sum_probs=88.8

Q ss_pred             ChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       175 s~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      ++++||++.|++.|+|+++.+..++++|++|+|+|+|++|++++++++..+..+|++++++++|+++++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            57889999999999999988899999999999999999999999999999998999999999999999999999999987


Q ss_pred             CCCCccHHHHHHHhcCC-CceEEE
Q 023561          255 NCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +  +++..+.+++.+.+ |+|.+.
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vi  103 (175)
T d1cdoa2          82 D--HSEPISQVLSKMTNGGVDFSL  103 (175)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEE
T ss_pred             C--cchhHHHHHHhhccCCcceee
Confidence            5  23455666666655 776654

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.66  E-value=1.6e-15  Score=119.32  Aligned_cols=134  Identities=13%  Similarity=0.109  Sum_probs=101.0

Q ss_pred             cceeeeeeecCC--CCC----cEEEEeecCCCCCCeEEEEeeeeecChhhhhhhhcCCCCCCCCcccccceeEEEEEeCC
Q 023561           14 PIQCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGE   87 (280)
Q Consensus        14 ~~~~~a~~~~~~--g~~----l~~~~~~~p~~~~~eVlIkv~~~~i~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~   87 (280)
                      |++.|+|++.+.  |.|    |++++.++|+|++||||||+++.++++.....+...    ....++..+++|+|++  +
T Consensus         1 M~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~----~~g~~~~g~~vg~Vv~--S   74 (147)
T d1v3va1           1 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRL----KEGAVMMGQQVARVVE--S   74 (147)
T ss_dssp             CCEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGS----CTTSBCCCCEEEEEEE--E
T ss_pred             CcccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccccc----ccCCccccceEEEEEE--e
Confidence            567899999864  544    999999999999999999999999988765544322    2233456688999998  6


Q ss_pred             CCCCCCCCCEEEecCCCCCCCChhhcCCCCCCCCCCCCCcCCCCCCCCCccccccCCceeecccccceeeeeEEeecccE
Q 023561           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (280)
Q Consensus        88 ~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  167 (280)
                      +.++|++||+|...                                                    ++|+||.+.+...+
T Consensus        75 ~~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l  102 (147)
T d1v3va1          75 KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGL  102 (147)
T ss_dssp             SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSC
T ss_pred             CCCcccCCCEEEEc----------------------------------------------------cCCEeEEEecccee
Confidence            67889999999621                                                    27999999999999


Q ss_pred             EEcCCCCCh-----hhhcccchhhHHHHH-HHHHHcCCCCCCEEEE
Q 023561          168 VKVDPTVPP-----NRACLLSCGVSTGVG-AAWRTANVEVGSTVVI  207 (280)
Q Consensus       168 ~~iP~~ls~-----~~aa~l~~~~~ta~~-~l~~~~~~~~g~~VlI  207 (280)
                      .++|++++.     ...+++.....||++ .+  ....+.|++|++
T Consensus       103 ~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl--~~~~k~Getvv~  146 (147)
T d1v3va1         103 EKLLTEWPDKKIQYHEHVTKGFENMPAAFIEM--LNGANLGKAVVT  146 (147)
T ss_dssp             EECCTTCCTTSSCCCEEEEECGGGHHHHHHHH--HTTCCSSEEEEE
T ss_pred             eEccccccccccchhhhHhccccchHHHHHHh--hCCCCCCCEEEe
Confidence            999876543     234456667777544 33  344577999986

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=6.7e-16  Score=124.31  Aligned_cols=100  Identities=25%  Similarity=0.331  Sum_probs=91.3

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +|+.+||.++|++.|||+++ +..++++|++|+|+|+ |++|++++++++.+|...|++++.+++|+++++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            57899999999999999975 7789999999999996 999999999999999889999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +++   +++.+.+++.+.+ ++|.+.
T Consensus        80 ~~~---~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          80 ASM---QDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             TTT---SCHHHHHHHHTTTSCEEEEE
T ss_pred             cCC---cCHHHHHHHHhhcccchhhh
Confidence            887   8899999999988 665443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.64  E-value=6.9e-16  Score=125.77  Aligned_cols=95  Identities=20%  Similarity=0.154  Sum_probs=86.1

Q ss_pred             cccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCC
Q 023561          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (280)
Q Consensus       180 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~  258 (280)
                      +++.+++.|||.++.+..++++|++|||+|+ |++|++++|+++..|+ +||++.++++|.++++++|+++++++++   
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~---   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT---   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc---
Confidence            4677899999999999999999999999998 9999999999999999 8999999999999999999999999988   


Q ss_pred             ccHHHHHHHhcCC-CceEEEe
Q 023561          259 KSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       259 ~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +++.+.+++.+++ |+|.|..
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D  104 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFD  104 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEE
T ss_pred             ccHHHHHHHHhhcCCCceeEE
Confidence            8888888888877 7766553

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=3e-16  Score=126.80  Aligned_cols=94  Identities=21%  Similarity=0.258  Sum_probs=81.8

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +|+++||++++++.|||+++ +..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|++.++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            58999999999999999976 5689999999999997 9999999999999999 8999999999999999999999998


Q ss_pred             CCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          253 SKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      +.+        ...+.+.+ |+|.+.
T Consensus        79 ~~~--------~~~~~~~~~g~D~v~   96 (171)
T d1iz0a2          79 YAE--------VPERAKAWGGLDLVL   96 (171)
T ss_dssp             GGG--------HHHHHHHTTSEEEEE
T ss_pred             hhh--------hhhhhhccccccccc
Confidence            764        33445556 765543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.64  E-value=2.4e-16  Score=128.03  Aligned_cols=98  Identities=10%  Similarity=0.063  Sum_probs=79.2

Q ss_pred             CChhhhcccchhhHHHHHHH---HHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          174 VPPNRACLLSCGVSTGVGAA---WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l---~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|++|||++++++.|||+++   .+..+.++|++|||+|+ |++|.+++|+|+..|+ +|+++.++++|.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            68999999999999999654   45678889999999997 9999999999999999 8999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCC-CceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                      ++|+++    .+.+.++ .+++ |+|.|+
T Consensus        80 vi~~~~----~~~~~~~-~~~~~gvD~vi  103 (176)
T d1xa0a2          80 VLARED----VMAERIR-PLDKQRWAAAV  103 (176)
T ss_dssp             EEECC--------------CCSCCEEEEE
T ss_pred             eeecch----hHHHHHH-HhhccCcCEEE
Confidence            999865    3344444 4555 876554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.63  E-value=1.3e-15  Score=122.04  Aligned_cols=98  Identities=21%  Similarity=0.343  Sum_probs=89.4

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +|+++||+++|++.|+|+++ +..++++|++|+|+|+|++|++++++++..|+ +|++++++++|+++++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            58999999999999999975 67899999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhcCCCceEE
Q 023561          254 KNCGDKSVSQVLLSIYDLPLLTI  276 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~~~gg~~~v  276 (280)
                      .+   +++.+.+++.+.+..+++
T Consensus        79 ~~---~~~~~~~~~~~~~~~~~v   98 (168)
T d1rjwa2          79 LK---EDAAKFMKEKVGGVHAAV   98 (168)
T ss_dssp             TT---SCHHHHHHHHHSSEEEEE
T ss_pred             cc---chhhhhcccccCCCceEE
Confidence            88   889999999987754333

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.63  E-value=2.1e-15  Score=121.75  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=86.9

Q ss_pred             hhhhcccchhhHHHHHHHHHHc-CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCC
Q 023561          176 PNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       176 ~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      +.++|+++|++.|+|+++.+.. .+++|++|+|+|+|++|++++|+++.+|+..|++++++++|+++++++|++++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            5788999999999999987766 489999999999999999999999999998999999999999999999999999987


Q ss_pred             CCCCccHHHHHHHhcCC-CceEEEe
Q 023561          255 NCGDKSVSQVLLSIYDL-PLLTISV  278 (280)
Q Consensus       255 ~~~~~~~~~~v~~~~~g-g~~~v~~  278 (280)
                      +    +..+.+.+.+++ |+|.++.
T Consensus        86 ~----~~~~~~~~~~~~~g~d~vid  106 (172)
T d1h2ba2          86 R----DPVKQVMELTRGRGVNVAMD  106 (172)
T ss_dssp             S----CHHHHHHHHTTTCCEEEEEE
T ss_pred             c----cHHHHHHHhhCCCCceEEEE
Confidence            5    455667788888 7765553

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=2.2e-15  Score=124.23  Aligned_cols=97  Identities=29%  Similarity=0.276  Sum_probs=89.0

Q ss_pred             hhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCC
Q 023561          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (280)
Q Consensus       177 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~  256 (280)
                      ++.+.|+.+++|+|+++ +.+++++|++|||+|+|++|++++++++.+|+.+|++++.+++|+++++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            46778889999999975 6799999999999999999999999999999999999999999999999999999999988 


Q ss_pred             CCccHHHHHHHhcCC-CceEEE
Q 023561          257 GDKSVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       257 ~~~~~~~~v~~~~~g-g~~~v~  277 (280)
                        +++.+.++++|++ |+|.+.
T Consensus        80 --~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          80 --TPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             --SCHHHHHHHHHSSSCEEEEE
T ss_pred             --cCHHHHHHHHhCCCCcEEEE
Confidence              8999999999999 765544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.4e-15  Score=119.11  Aligned_cols=99  Identities=20%  Similarity=0.329  Sum_probs=82.8

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +|+++||++. +++++|++ .++.++++|++|+|+|+|++|++++++++.+|+++|++++++++|+++++++|+++++++
T Consensus         1 vS~e~Aal~e-pla~a~~a-~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHA-CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHH-HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            5788988764 89999996 577899999999999999999999999999999899999999999999999999999998


Q ss_pred             CCCCCccHHHHHHHh---cCCCceEEE
Q 023561          254 KNCGDKSVSQVLLSI---YDLPLLTIS  277 (280)
Q Consensus       254 ~~~~~~~~~~~v~~~---~~gg~~~v~  277 (280)
                      .+   ++..+..+.+   .+.++|.++
T Consensus        79 ~~---~~~~~~~~~~~~~~g~g~Dvvi  102 (171)
T d1pl8a2          79 SK---ESPQEIARKVEGQLGCKPEVTI  102 (171)
T ss_dssp             SS---CCHHHHHHHHHHHHTSCCSEEE
T ss_pred             cc---cccccccccccccCCCCceEEE
Confidence            87   5544443332   333665554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=8.4e-15  Score=117.65  Aligned_cols=81  Identities=26%  Similarity=0.316  Sum_probs=74.3

Q ss_pred             CCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEc
Q 023561          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       173 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~  252 (280)
                      +.+++++|.+.|+..|+|+++ +..++++|++|+|+|+|++|++++|+||.+|+ ++|+++.+++|+++++++|+++++|
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEE
Confidence            456788888999999999975 67999999999999999999999999999999 6778989999999999999999999


Q ss_pred             CCC
Q 023561          253 SKN  255 (280)
Q Consensus       253 ~~~  255 (280)
                      +.+
T Consensus        81 ~~~   83 (168)
T d1uufa2          81 SRN   83 (168)
T ss_dssp             TTC
T ss_pred             Cch
Confidence            886

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=8.1e-15  Score=117.80  Aligned_cols=80  Identities=25%  Similarity=0.302  Sum_probs=73.4

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      ++++.||.+.|+..|+|+++ ++.++++|++|+|+|+|++|++++|++|.+|+ +|++++++++|+++++++|+++++++
T Consensus         1 lp~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~   78 (168)
T d1piwa2           1 IPSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIAT   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeec
Confidence            35577889999999999975 56899999999999999999999999999999 89999999999999999999999988


Q ss_pred             CC
Q 023561          254 KN  255 (280)
Q Consensus       254 ~~  255 (280)
                      .+
T Consensus        79 ~~   80 (168)
T d1piwa2          79 LE   80 (168)
T ss_dssp             GG
T ss_pred             cc
Confidence            65

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.3e-14  Score=118.70  Aligned_cols=100  Identities=19%  Similarity=0.202  Sum_probs=84.3

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCC--CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH-HHHHHcCCcE
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVTE  249 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~-~~~~~~Ga~~  249 (280)
                      +|+.+.| ++++..|||.++.+..++++|  ++|||+|+ |++|++++|+||.+|+++|+++..++++. ++.+++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            5666654 567899999999999999988  89999997 99999999999999997788777666554 4556799999


Q ss_pred             EEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          250 FVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       250 vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      ++|+.+   +++.+.+++.++.|+|.+.
T Consensus        81 vi~~~~---~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          81 AVNYKT---GNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             EEETTS---SCHHHHHHHHCTTCEEEEE
T ss_pred             Eeeccc---hhHHHHHHHHhccCceEEE
Confidence            999998   9999999999876875554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.55  E-value=1.9e-14  Score=115.49  Aligned_cols=101  Identities=26%  Similarity=0.334  Sum_probs=81.3

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~  253 (280)
                      +|+++||++. +++++|++ +++.++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++|++..++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a-~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHA-CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHH-HHHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            5788988774 89999996 577899999999999999999999999999999 89999999999999999999887765


Q ss_pred             CCCC--CccHHHHHHHhcCCCceEEE
Q 023561          254 KNCG--DKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       254 ~~~~--~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +...  ..+..+.+.+..++|+|.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vi  103 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTI  103 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred             cccccccchhhhhhhcccccCCceee
Confidence            4411  12333445555555776554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.53  E-value=4.1e-15  Score=121.87  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=83.1

Q ss_pred             CChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEE-Cc-cHHHHHHHHHHHHcCCCeEEEEcCC----hhHHHHHHHcCC
Q 023561          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVI----SEKFEIGKRFGV  247 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-G~-g~~G~~a~~la~~~g~~~vi~~~~~----~~~~~~~~~~Ga  247 (280)
                      +|+++||++++++.|||+++.+..++++|++|+|+ |+ |++|++++|+||.+|+ +||++.++    +++.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            58999999999999999998888999999999887 55 9999999999999999 77776544    346677889999


Q ss_pred             cEEEcCCCCCCccHHHHHHHhc---CCCceEEEec
Q 023561          248 TEFVNSKNCGDKSVSQVLLSIY---DLPLLTISVS  279 (280)
Q Consensus       248 ~~vi~~~~~~~~~~~~~v~~~~---~gg~~~v~~~  279 (280)
                      ++++++++.+..++.+.+++.+   ++++ ++++|
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~v-dvv~D  113 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEA-KLALN  113 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCE-EEEEE
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCc-eEEEE
Confidence            9999886533456666777764   3356 44444

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=6.1e-15  Score=119.69  Aligned_cols=81  Identities=14%  Similarity=0.190  Sum_probs=71.5

Q ss_pred             CChhhhcccchhhHHHHHHHH---HHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          174 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|+.+||.++++..|||.+++   +....+++++|||+|+ |++|++++|+||.+|+ +||++.++++|.+.++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578999999999999997654   3334455679999998 9999999999999999 8999999999999999999999


Q ss_pred             EEcCCC
Q 023561          250 FVNSKN  255 (280)
Q Consensus       250 vi~~~~  255 (280)
                      ++|+++
T Consensus        80 vi~~~~   85 (177)
T d1o89a2          80 VLPRDE   85 (177)
T ss_dssp             EEEGGG
T ss_pred             cccccc
Confidence            999876

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1e-13  Score=96.48  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             CChhhhcccchhhHHHHHHHH---HHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          174 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       174 ls~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|+++|+.++++..|||.+++   +....+++++|||+|+ |++|.+++|+++.+|+ +|+++.++++|.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            588999999999999988754   3456789999999998 9999999999999999 89999999999999999985

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.28  E-value=7.1e-13  Score=106.28  Aligned_cols=88  Identities=14%  Similarity=0.085  Sum_probs=68.2

Q ss_pred             hhhHHHHHH---HHHHcCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCc
Q 023561          184 CGVSTGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (280)
Q Consensus       184 ~~~~ta~~~---l~~~~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~  259 (280)
                      ++..|||.+   +.+....+++++|||+|+ |++|++++|+||.+|+ +||++.++++|.++++++|+++++++++    
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~----   77 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED----   77 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH----
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc----
Confidence            345677654   445556777889999997 9999999999999999 8999999999999999999999998754    


Q ss_pred             cHHHHHHHhcCC-CceEEE
Q 023561          260 SVSQVLLSIYDL-PLLTIS  277 (280)
Q Consensus       260 ~~~~~v~~~~~g-g~~~v~  277 (280)
                       +.....+.+.+ ++|.++
T Consensus        78 -~~~~~~~~~~~~gvd~vi   95 (167)
T d1tt7a2          78 -VYDGTLKALSKQQWQGAV   95 (167)
T ss_dssp             -HCSSCCCSSCCCCEEEEE
T ss_pred             -hhchhhhcccCCCceEEE
Confidence             22223344555 765554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.14  E-value=0.00045  Score=54.41  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=44.7

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEE
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~v  250 (280)
                      +..+|+|+|+|-.|+.|+..|+.+|+ .|.++|.+.++++.+++++...+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i   76 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFI   76 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceE
Confidence            35689999999999999999999999 99999999999999999987543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0025  Score=52.34  Aligned_cols=75  Identities=21%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.+ ++..+.+..+- .+++..+.+.+.. |++|.++
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv-~d~~~v~~~~~~~-g~iDilV   81 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDL-GDWEATERALGSV-GPVDLLV   81 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCT-TCHHHHHHHHTTC-CCCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeC-CCHHHHHHHHHHh-CCceEEE
Confidence            37899999998 9999999999999999 89999999988776654 55433333322 2244444444433 3455444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.97  E-value=0.00087  Score=51.97  Aligned_cols=45  Identities=27%  Similarity=0.249  Sum_probs=41.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      +..+|+|+|+|-.|+.|++.|+.+|+ .|.++|.+.++++.+++..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~   75 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLF   75 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhh
Confidence            45799999999999999999999999 9999999999999998743

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.0041  Score=50.91  Aligned_cols=74  Identities=18%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.+ ++....+..+- .+++..+.+.+.. |++|.++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv-~~~~~v~~~~~~~-g~iDilV   79 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDL-GDWDATEKALGGI-GPVDLLV   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCT-TCHHHHHHHHTTC-CCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeC-CCHHHHHHHHHHc-CCCeEEE
Confidence            6899999998 9999999999999999 89999999888766654 54433333322 2244444444333 3555544

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0022  Score=52.91  Aligned_cols=47  Identities=21%  Similarity=0.172  Sum_probs=40.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      -+|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.+ ++.
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~   52 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPG   52 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCC
Confidence            36899999998 9999999999999999 89999999998887776 443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.0021  Score=52.90  Aligned_cols=49  Identities=27%  Similarity=0.254  Sum_probs=43.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+++.+...
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~   52 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAF   52 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeE
Confidence            46899999998 9999999999999999 8999999999999888888753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.0028  Score=48.89  Aligned_cols=55  Identities=13%  Similarity=0.142  Sum_probs=46.2

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      +++...+.++++|+|+|+|+.+.+++..++..|++++.++.|+.+|.+.+.+ ++.
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~   63 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGY   63 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhh
Confidence            4566677788999999999999999999999999899999999988776654 553

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.0031  Score=51.69  Aligned_cols=48  Identities=25%  Similarity=0.290  Sum_probs=41.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~  249 (280)
                      +|+++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.+ +++..
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~   53 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHP   53 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeE
Confidence            5899999998 9999999999999999 89999999988877765 66643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.61  E-value=0.0043  Score=51.26  Aligned_cols=48  Identities=23%  Similarity=0.311  Sum_probs=39.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HHcCCcE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~Ga~~  249 (280)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+    ++.+...
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~   57 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNV   57 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCc
Confidence            6899999998 9999999999999999 899999998775544    4455543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.58  E-value=0.0028  Score=52.28  Aligned_cols=51  Identities=18%  Similarity=0.150  Sum_probs=42.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCcEEE
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV  251 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~~vi  251 (280)
                      -+|+++||.|+ +++|.+.+..+...|+ +|+.+++++++++.+. +++...+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~   56 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMF   56 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEE
Confidence            36899999998 9999999999999999 8999999998877665 47764443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0032  Score=51.63  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=53.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhcCCCceEEE
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIYDLPLLTIS  277 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~~gg~~~v~  277 (280)
                      -+|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.+....+....+. ...+..+.+.+..+ ++|.++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~-~id~lV   79 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDV-TKKKQIDQFANEVE-RLDVLF   79 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCT-TCHHHHHHHHHHCS-CCSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeec-cccccccccccccc-cceeEE
Confidence            46899999998 9999999999999999 8999999999888877643333222221 23566666655443 444443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.53  E-value=0.0055  Score=48.11  Aligned_cols=47  Identities=17%  Similarity=0.171  Sum_probs=40.3

Q ss_pred             cCCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       197 ~~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ...-+|++++|+|+ |++|...+..+...|+ +|+.++++.++.+.+.+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~   65 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAAD   65 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHH
Confidence            34568999999998 9999999999999999 89999999988766643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.53  E-value=0.0079  Score=49.58  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~   49 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCL   49 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6899999998 9999999999999999 8999999988766543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.50  E-value=0.0028  Score=52.90  Aligned_cols=47  Identities=23%  Similarity=0.296  Sum_probs=40.5

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.+ +|..
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~   52 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDN   52 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCC
Confidence            5899999998 9999999999999999 89999999988766554 6653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.48  E-value=0.0036  Score=51.37  Aligned_cols=47  Identities=15%  Similarity=0.175  Sum_probs=40.3

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      -+|+++||.|+ +++|.+.++.+...|+ +|+.+++++++++.+.+ ++-
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~   52 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD   52 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC
Confidence            36899999998 9999999999999999 89999999988876654 554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.41  E-value=0.0044  Score=51.39  Aligned_cols=44  Identities=20%  Similarity=0.181  Sum_probs=38.5

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+.+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~   48 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCN   48 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            36899999998 9999999999999999 89999999988776653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.38  E-value=0.0034  Score=51.81  Aligned_cols=48  Identities=31%  Similarity=0.295  Sum_probs=40.6

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCcE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~~  249 (280)
                      +|++++|.|+ +++|++.+..+...|+ +|+++++++++++.+. ++|...
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~   53 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAA   53 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCce
Confidence            5899999998 9999999999999999 8999999988776554 477643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.35  E-value=0.0056  Score=46.64  Aligned_cols=43  Identities=12%  Similarity=0.057  Sum_probs=39.0

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++++|+|+|+|.+|...++.+...|. .|++++++.++.+.+.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~   43 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSA   43 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHh
Confidence            36899999999999999999988999 89999999999888876

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.32  E-value=0.005  Score=50.79  Aligned_cols=47  Identities=32%  Similarity=0.419  Sum_probs=39.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~  248 (280)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. ++|..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~   52 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDA   52 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGG
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCc
Confidence            6899999998 9999999998889999 8999999988876664 46643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.31  E-value=0.0065  Score=49.55  Aligned_cols=49  Identities=20%  Similarity=0.227  Sum_probs=41.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcE
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE  249 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~  249 (280)
                      -+|+++||+|+ +++|...++-+...|+ +|+.+++++++++...+ +|.+.
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~   53 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEA   53 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCce
Confidence            36899999998 9999999999999999 99999999988766654 77643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0029  Score=51.87  Aligned_cols=46  Identities=26%  Similarity=0.373  Sum_probs=39.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV  247 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga  247 (280)
                      +|++++|+|+ +++|.+.+..+...|+ +|+.+++++++++.+.+ ++.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~   50 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA   50 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            5899999998 9999999999999999 89999999988776654 554

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.24  E-value=0.017  Score=47.14  Aligned_cols=51  Identities=20%  Similarity=0.175  Sum_probs=38.6

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh-------HHHHHHHcCCc
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-------KFEIGKRFGVT  248 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~-------~~~~~~~~Ga~  248 (280)
                      .++|+.++||+|+ +++|...+..+...|+++|+.+.++..       ..+.+++.|..
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~   63 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGAR   63 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCE
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhcccc
Confidence            5788999999998 999999998888889866777766532       23344557764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.23  E-value=0.014  Score=44.45  Aligned_cols=54  Identities=20%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             HHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHH-HHHHcCC
Q 023561          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGV  247 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~-~~~~~Ga  247 (280)
                      .+...--.+++|||+|+|.+|.+.+..+...|++.+.++.|+.+|.+ +++++|.
T Consensus        16 ~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~   70 (159)
T d1gpja2          16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG   70 (159)
T ss_dssp             HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC
T ss_pred             HHHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc
Confidence            34445567899999999999999999999999988999999987754 5556764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.23  E-value=0.0075  Score=49.74  Aligned_cols=42  Identities=31%  Similarity=0.374  Sum_probs=37.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|+++||+|+ +++|++.+..+...|+ +|+++++++++++.+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~   46 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAE   46 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6899999998 9999999999999999 8999999988776554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.20  E-value=0.011  Score=48.81  Aligned_cols=42  Identities=24%  Similarity=0.124  Sum_probs=37.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~   49 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECL   49 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5899999998 9999999999999999 8999999988766553

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.011  Score=45.40  Aligned_cols=51  Identities=12%  Similarity=0.053  Sum_probs=41.3

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.+..-..+|++|+|+|+|+.+.+++..+..+|+ ++.++.|+.+|.+.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~   59 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAK   59 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHH
Confidence            4344334678999999999999999998899999 79999999888766543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.09  E-value=0.015  Score=48.40  Aligned_cols=41  Identities=15%  Similarity=0.098  Sum_probs=35.8

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      -+|+++||.|+ +++|.+.+..+...|+ +|+.+++++++++.
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~   64 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKA   64 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            35799999998 9999999999999999 89999999876543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0064  Score=50.06  Aligned_cols=47  Identities=21%  Similarity=0.297  Sum_probs=39.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~Ga~  248 (280)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+    ++.|..
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~   61 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQ   61 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCc
Confidence            6899999998 9999999999999999 899999998776554    345653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.011  Score=48.27  Aligned_cols=43  Identities=21%  Similarity=0.178  Sum_probs=37.4

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -.|++++|.|+ +++|...+..+...|+ +|+.+++++++++.+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~   48 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETA   48 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            36899999998 9999998888888999 8999999998876553

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.00  E-value=0.01  Score=48.66  Aligned_cols=47  Identities=19%  Similarity=0.379  Sum_probs=38.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-----HHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-----~~~Ga~  248 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+++++++++++..     ++.|..
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~   56 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVE   56 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCc
Confidence            5899999998 9999999999999999 899999998775433     345654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.95  E-value=0.0079  Score=49.52  Aligned_cols=40  Identities=23%  Similarity=0.268  Sum_probs=34.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+++++++++++.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~   48 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVE   48 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            5899999998 9999999999999999 89999998776543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.012  Score=47.78  Aligned_cols=47  Identities=30%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH-HcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~Ga~  248 (280)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Confidence            6899999998 9999999999999999 8999999887766554 46653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.93  E-value=0.0078  Score=49.38  Aligned_cols=44  Identities=27%  Similarity=0.202  Sum_probs=38.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      -+|+++||.|+ +++|.+.+..+...|+ +|+++++++++++.+.+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            36899999998 9999999999999999 89999999988776654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0057  Score=50.66  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=38.1

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            36899999998 9999999988888999 8999999999877664

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.88  E-value=0.0089  Score=49.65  Aligned_cols=42  Identities=26%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|++++|+|+ +++|.+.+..+...|+ +|+++++++++++.+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~   45 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETK   45 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5899999998 9999999999999999 8999999988776553

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.85  E-value=0.0089  Score=45.90  Aligned_cols=44  Identities=25%  Similarity=0.341  Sum_probs=39.8

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  246 (280)
                      .+++.|+|+|.+|++.+..+...|. .|.++++++++.+.+++.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~   44 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRG   44 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHT
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcC
Confidence            3789999999999999999999999 9999999999998887755

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.85  E-value=0.02  Score=46.18  Aligned_cols=45  Identities=27%  Similarity=0.216  Sum_probs=37.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~  249 (280)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.++++++++   ++.+...
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l---~~~~~~~   48 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRY   48 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH---HhcCCcE
Confidence            5799999998 9999999999999999 899999987654   4455543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.83  E-value=0.015  Score=47.44  Aligned_cols=53  Identities=17%  Similarity=0.268  Sum_probs=39.2

Q ss_pred             CCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----HcCCcEEEcCC
Q 023561          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSK  254 (280)
Q Consensus       201 ~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~----~~Ga~~vi~~~  254 (280)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+.++++++..+.++    ..+....+..+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D   66 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRAD   66 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccc
Confidence            6899999997 5  799999988888999 8888888876544443    34444555443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.016  Score=48.79  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=37.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~   52 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   52 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            47899999998 9999999999999999 899999998876554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0096  Score=48.83  Aligned_cols=42  Identities=33%  Similarity=0.263  Sum_probs=37.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~   44 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCK   44 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5899999998 9999999999999999 8999999988766554

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.71  E-value=0.0063  Score=44.61  Aligned_cols=48  Identities=19%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEE
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi  251 (280)
                      ++++|+|.|.+|...++.+...|. .|++++.++++.+.+++.|...++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~   48 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI   48 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCccee
Confidence            457889999999999999999999 899999999999999888865444

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.71  E-value=0.015  Score=47.75  Aligned_cols=49  Identities=22%  Similarity=0.206  Sum_probs=36.9

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHH----HHHHcCCcE
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFE----IGKRFGVTE  249 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~----~~~~~Ga~~  249 (280)
                      -.|+++||+|+ +++|.+.++.+...|+ +|+++ .+++++.+    .+++.|.+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~   58 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQG   58 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCc
Confidence            36899999998 9999999999999999 67665 55555433    344567643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.70  E-value=0.013  Score=48.01  Aligned_cols=42  Identities=12%  Similarity=0.122  Sum_probs=36.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~   51 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVV   51 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            4789999998 9999999998889999 8999999988766543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.68  E-value=0.009  Score=48.75  Aligned_cols=45  Identities=24%  Similarity=0.166  Sum_probs=37.6

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHHcC
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFG  246 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~~G  246 (280)
                      .++|||+|+ +++|+..++.+...|+. .|+.+.++.++++.+++..
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~   49 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK   49 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhh
Confidence            489999998 99999988877778863 7888999999988887743

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.017  Score=44.76  Aligned_cols=41  Identities=24%  Similarity=0.341  Sum_probs=35.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      -.+++|+|+|+|+.+.+++..+...|++.++++.++.++.+
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~   56 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFD   56 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHH
Confidence            46789999999999999999999999999999999876544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.66  E-value=0.019  Score=46.98  Aligned_cols=47  Identities=21%  Similarity=0.265  Sum_probs=38.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~Ga~  248 (280)
                      .|+.+||+|+ +++|++.+..+...|+ +|+++++++++++.+    ++.|..
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~   52 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVE   52 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence            3678899998 9999999999999999 899999998776654    345654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.013  Score=48.24  Aligned_cols=42  Identities=24%  Similarity=0.266  Sum_probs=37.0

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      -+|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~   50 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   50 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            46899999998 9999999988889999 899999998886664

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.56  E-value=0.013  Score=48.25  Aligned_cols=47  Identities=26%  Similarity=0.179  Sum_probs=36.8

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh-HH----HHHHHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KF----EIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~-~~----~~~~~~Ga~  248 (280)
                      +|++++|+|+ +++|.+.++.+...|+ +|++++++.+ +.    +.+++.|.+
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~   58 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGE   58 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCc
Confidence            6899999998 9999999988889999 8998888743 33    334456654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.49  E-value=0.016  Score=47.92  Aligned_cols=49  Identities=22%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC-hhHHH----HHHHcCCcEE
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFE----IGKRFGVTEF  250 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~-~~~~~----~~~~~Ga~~v  250 (280)
                      +|+++||.|+ +++|.+.++.+...|+ +|++++++ +++.+    .+++.|.+..
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~   71 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAA   71 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCcee
Confidence            4899999998 9999999999999999 78888765 34333    3445666443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.49  E-value=0.015  Score=47.76  Aligned_cols=38  Identities=21%  Similarity=0.182  Sum_probs=32.7

Q ss_pred             CCCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       200 ~~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      -+|+++||+|+ |  ++|.+.+..+...|+ +|+.++++++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~   43 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESL   43 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            35899999996 5  799999999999999 89999988643

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.47  E-value=0.025  Score=46.08  Aligned_cols=47  Identities=28%  Similarity=0.268  Sum_probs=38.0

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHHcCCc
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVT  248 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~--~~~~~~~~Ga~  248 (280)
                      +|+++||.|+ +++|.+.++.+...|+ +|++++++++  ..+.+++.|..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~   53 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRR   53 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCc
Confidence            5799999998 9999999999999999 8999988653  33445567764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.43  E-value=0.01  Score=49.16  Aligned_cols=42  Identities=29%  Similarity=0.232  Sum_probs=37.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++++.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~   46 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETR   46 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5899999998 9999999999999999 8999999998876654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.43  E-value=0.015  Score=47.84  Aligned_cols=41  Identities=34%  Similarity=0.334  Sum_probs=36.7

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +|+++||.|+ +++|.+.+..+...|+ +|+++++++++++..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~   44 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEAS   44 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5799999998 9999999999999999 899999998876654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0072  Score=41.69  Aligned_cols=35  Identities=31%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|++|+|+|.|..|+++++++...|+ +|++.|...
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            57899999999999999999999999 899998744

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.37  E-value=0.02  Score=45.42  Aligned_cols=48  Identities=31%  Similarity=0.404  Sum_probs=43.9

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      -.|++|+|.|-|.+|..+++++...|+ +|++.+.+.++.+....+|++
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~   72 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT   72 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccc
Confidence            478999999999999999999999999 899999999999888888864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.027  Score=45.66  Aligned_cols=52  Identities=15%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             CCCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----HcCCcEEEc
Q 023561          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVN  252 (280)
Q Consensus       200 ~~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~----~~Ga~~vi~  252 (280)
                      -+|+++||+|+ +  ++|.+.+..+...|+ +|+.++++++..+.++    ..|....+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~   61 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQ   61 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEE
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceee
Confidence            46899999997 6  688888888889999 7898998876555443    355544443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.22  E-value=0.035  Score=40.42  Aligned_cols=45  Identities=18%  Similarity=0.321  Sum_probs=39.2

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcE
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE  249 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~  249 (280)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+++ ++...
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~v   47 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALV   47 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhhh
Confidence            58999999999999999999999 89999999999888765 66543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.17  E-value=0.014  Score=48.06  Aligned_cols=42  Identities=24%  Similarity=0.208  Sum_probs=37.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+++++++++++.+.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~   46 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETR   46 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6889999998 9999999999999999 8999999988876553

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.02  E-value=0.028  Score=42.51  Aligned_cols=47  Identities=28%  Similarity=0.318  Sum_probs=40.3

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC-cEEE
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFV  251 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga-~~vi  251 (280)
                      +|.|+|.|.+|...+..++..|. .|++.++++++++.+++.|. +...
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~   49 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAG   49 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEE
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceee
Confidence            58899999999988888888999 89999999999999988885 4443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.02  E-value=0.038  Score=45.10  Aligned_cols=45  Identities=18%  Similarity=0.096  Sum_probs=36.1

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH----HHcCCc
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT  248 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~Ga~  248 (280)
                      +.+||+|+ +++|.+.+..+...|+ +|+.+++++++++.+    ++.|.+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~   51 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGH   51 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc
Confidence            35688998 9999999888888999 899999998876654    345653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.99  E-value=0.011  Score=45.58  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=31.1

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +++|+|+|+|+.|+.++..++..|++.|+++++.+
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            58899999999999999999999996688888764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.84  E-value=0.028  Score=47.64  Aligned_cols=45  Identities=22%  Similarity=0.227  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       198 ~~~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      -+++|++|||+|+ |.+|...+..+...|. .|+++.++.++.+.++
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            3578999999998 9999998888888898 8999888877665543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.82  E-value=0.082  Score=37.53  Aligned_cols=43  Identities=21%  Similarity=0.139  Sum_probs=36.9

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +.+.....++++|+|+|+|.+|+-.+..++..|. .|.++.+.+
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            4566777889999999999999999999999999 888888754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.73  E-value=0.016  Score=46.78  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +++|+|+|+|+.|+.++..++..|. +|++++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5889999999999999999999999 899998643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.63  E-value=0.042  Score=44.89  Aligned_cols=39  Identities=28%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh-hHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~-~~~~  240 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|+++++++ ++++
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~   43 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIE   43 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHH
Confidence            6899999998 9999999999999999 899999864 4443

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.62  E-value=0.046  Score=41.86  Aligned_cols=45  Identities=16%  Similarity=0.064  Sum_probs=36.6

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ..++++|+|+|+|+.+.+++..+...+ .+++++.|+.+|.+.+.+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~   59 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAE   59 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHH
Confidence            457889999999999999888777655 589999999888776643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.038  Score=43.21  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=34.4

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++|.|+|+|.+|...++++...|+ .|+..|++++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHH
Confidence            589999999999999999999999 999999998765544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.52  E-value=0.024  Score=45.54  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..++|+|+|+|+.|++++..++..|. +|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            45889999999999999999999999 899998753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.028  Score=40.07  Aligned_cols=38  Identities=26%  Similarity=0.484  Sum_probs=32.2

Q ss_pred             CCCC-CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          199 VEVG-STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       199 ~~~g-~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +.++ .+|.|+|+|.+|...++.|+.+|. ++++.+.+++
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            3444 569999999999999999999999 8899987654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.027  Score=43.72  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ...+++|+|+|+|+.|+.|+..+..+|. +|++++..+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            4557899999999999999999999999 899998764

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.40  E-value=0.057  Score=45.24  Aligned_cols=34  Identities=29%  Similarity=0.317  Sum_probs=30.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +|+++||+|+ +++|.+.+..+...|+ +|++.+++
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~   40 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLG   40 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            5899999998 9999999999999999 88888654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.13  Score=39.07  Aligned_cols=53  Identities=23%  Similarity=0.329  Sum_probs=42.7

Q ss_pred             HHHHHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       190 ~~~l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +.++.+..+ .-.|++++|+|-|-+|...++.++.+|+ +|++++.++-+.-.+.
T Consensus        11 ~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~   64 (163)
T d1li4a1          11 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAA   64 (163)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             HHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhh
Confidence            334555555 4589999999999999999999999999 9999999886644443

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.31  E-value=0.022  Score=46.62  Aligned_cols=39  Identities=15%  Similarity=0.109  Sum_probs=30.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~  240 (280)
                      +|++|||.|+ +++|...+..+...|+ +|+++.++.++.+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~   43 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPT   43 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHH
Confidence            5899999998 9999999998899999 6666655544433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.28  E-value=0.059  Score=40.69  Aligned_cols=49  Identities=29%  Similarity=0.443  Sum_probs=41.0

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHHcCC-cEEE
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGV-TEFV  251 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~Ga-~~vi  251 (280)
                      ++|+|+|.|.+|...+..++..|. .+|++++++++.++.+++.|. ++..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~   52 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT   52 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhh
Confidence            368999999999998888888885 379999999999999999876 4443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=94.28  E-value=0.032  Score=42.68  Aligned_cols=49  Identities=18%  Similarity=0.225  Sum_probs=40.9

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .+....+++|.+||.+|.|. |..+..||+ .|+ .|+++|.+++-++.+++
T Consensus        12 ~~~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          12 YWSSLNVVPGARVLVPLCGK-SQDMSWLSG-QGY-HVVGAELSEAAVERYFT   60 (201)
T ss_dssp             HHHHHCCCTTCEEEETTTCC-SHHHHHHHH-HCC-EEEEEEECHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCcC-CHHHHHHHH-cCC-ceEeecccHHHHHHHHH
Confidence            35667899999999999754 677888886 599 99999999998888876

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.27  E-value=0.034  Score=45.31  Aligned_cols=40  Identities=13%  Similarity=0.016  Sum_probs=34.7

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      |+||+|+ +++|+..+..+...|+ +|++.+++.++++.+++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~   42 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEA   42 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh
Confidence            7899998 8999999998889999 89999998887777665

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.024  Score=37.79  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=30.5

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      ++|.|+|+|.+|.+.++.++.+|. ++++++.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            589999999999999999999999 8899987654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.068  Score=43.84  Aligned_cols=42  Identities=21%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             CCCEE-EEECc-cHHHHHHHH-HHHHcCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTV-VIFGL-GSIGLAVAE-GARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~V-lI~G~-g~~G~~a~~-la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .|++| ||+|+ +++|+..+. |++.-|+ +|+.+++++++.+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~   45 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAV   45 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH
Confidence            36778 66788 999998765 5555688 8999999998876543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.89  E-value=0.053  Score=43.28  Aligned_cols=64  Identities=25%  Similarity=0.345  Sum_probs=46.4

Q ss_pred             ccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH----HcCCc
Q 023561          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT  248 (280)
Q Consensus       181 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~----~~Ga~  248 (280)
                      .++.+...|.  +.+.+.+++|++||.+|+|. |..++.+++..|. .|++++.+++-.+.++    ++|.+
T Consensus        60 ~is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~  127 (215)
T d1jg1a_          60 TVSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVK  127 (215)
T ss_dssp             EECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCc
Confidence            3444554443  56888999999999999754 7778888888785 7999999876544443    46754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.86  E-value=0.069  Score=43.11  Aligned_cols=40  Identities=13%  Similarity=0.122  Sum_probs=31.5

Q ss_pred             CEEEEECc-cHHHHHHHHHHH---HcCCCeEEEEcCChhHHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGAR---LCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~---~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ++|||+|+ +++|+..++.+.   ..|+ +|+++++++++++.++
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~   46 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELE   46 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH
Confidence            68999998 999998776543   3577 8999999988766554

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.69  E-value=0.069  Score=43.29  Aligned_cols=48  Identities=19%  Similarity=0.251  Sum_probs=36.9

Q ss_pred             CCCCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCChhHH-HHH-HHcCC
Q 023561          199 VEVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKF-EIG-KRFGV  247 (280)
Q Consensus       199 ~~~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~~~~-~~~-~~~Ga  247 (280)
                      .-+|+++||.|+ |  ++|.+.++.+...|+ +|+.++++++++ +.+ ++++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~   55 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPA   55 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCC
Confidence            346899999995 4  599999998999999 899998887765 333 34554

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.023  Score=44.50  Aligned_cols=46  Identities=20%  Similarity=0.184  Sum_probs=37.3

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      .++|+|+|+ |.+|...+..+...|. .|+++.++.+|++.....+++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~   49 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAH   49 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccccccc
Confidence            478999998 9999999988888998 899999998886554444443

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.64  E-value=0.1  Score=39.92  Aligned_cols=48  Identities=25%  Similarity=0.142  Sum_probs=36.4

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +.+....-++++|+|+|+|+++.+++..+..  ..+|.++.|+.+|.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~--~~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAK--DNNIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHCCCCSCEEEEECCSHHHHHHHHHHTS--SSEEEEECSSHHHHHHH
T ss_pred             HHHhCCCcCCCEEEEECCcHHHHHHHHHHcc--ccceeeehhhhhHHHHH
Confidence            4444445678999999999999987766643  44899999998887654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.60  E-value=0.046  Score=44.78  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .....++|+|+|+|..|+.++..+...|. +|++++..+
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34566899999999999999998888999 899998654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.56  E-value=0.1  Score=41.22  Aligned_cols=51  Identities=25%  Similarity=0.354  Sum_probs=42.0

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  244 (280)
                      +.+.+++++|++||-+|+|. |..++.+++..|. ..|++++.+++..+.+++
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            56788999999999999865 7888889998763 379999999887777654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.56  E-value=0.099  Score=37.50  Aligned_cols=43  Identities=23%  Similarity=0.358  Sum_probs=35.6

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +........+++|+|+|+|.+|+-+++.++.+|. +|.++++.+
T Consensus        21 i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHHHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            4455555678899999999999999999999999 788887653

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.50  E-value=0.04  Score=44.34  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=31.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +|++|||.|+ +++|.+.++.+...|+ +|+.+++.+.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            5899999998 9999999999999999 8988887654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.46  E-value=0.14  Score=37.81  Aligned_cols=63  Identities=17%  Similarity=0.083  Sum_probs=47.1

Q ss_pred             CEEEEEC-ccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHh
Q 023561          203 STVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSI  268 (280)
Q Consensus       203 ~~VlI~G-~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~  268 (280)
                      ++|.|+| .|.+|...+..++..|. .|.+.+++.+........+++.++....  .....+.+.+.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~v~~~~   73 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP--INLTLETIERL   73 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC--GGGHHHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc--hhhheeeeecc
Confidence            6899999 59999999999999999 8999999887766666677777765544  23333444443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.39  E-value=0.053  Score=42.08  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=33.8

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      ++|.|+|+|.+|...+.++...|+ .|+..|++++.++.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            579999999999998888888899 899999998766554

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.19  E-value=0.06  Score=42.93  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=32.6

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+.+++|+|+|+|+.|+.++..++..|. .|++++.++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            3567999999999999999999999999 899998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.18  E-value=0.043  Score=42.84  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=28.6

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|+|+|+|+.|+.++..++..|.++|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            589999999999999989889975799998754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.95  E-value=0.09  Score=39.64  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=33.5

Q ss_pred             EEEEEC-ccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          204 TVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       204 ~VlI~G-~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +|.|+| +|.+|...++.+...|. +|++.+|++++.+.+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~   41 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA   41 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            578885 59999999999999999 8999999998876664

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.92  E-value=0.1  Score=37.17  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=33.4

Q ss_pred             cCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       197 ~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..++..++|+|+|+|.+|+=.+..++.+|. +|.++.+.+
T Consensus        17 ~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          17 FNIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TTCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             hccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            345667899999999999999999999999 889898753

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.70  E-value=0.032  Score=45.10  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=33.9

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~   44 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAP   44 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchh
Confidence            6899999998 9999999999999999 899999887654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=92.69  E-value=0.089  Score=41.51  Aligned_cols=35  Identities=26%  Similarity=0.189  Sum_probs=30.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +.-++|+|+|+|..|+.++..+...|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            455689999999999999999999999 89999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.089  Score=42.63  Aligned_cols=35  Identities=26%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ++..+|+|+|+|..|+.|+..+...|. +|++++.+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            456789999999999999999999999 89998764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.18  Score=40.10  Aligned_cols=59  Identities=27%  Similarity=0.359  Sum_probs=42.3

Q ss_pred             cchhhHHHHHHHHHHc--CCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHH
Q 023561          182 LSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK  243 (280)
Q Consensus       182 l~~~~~ta~~~l~~~~--~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~  243 (280)
                      ++.+...|.  +.+.+  .+++|++||-+|.|. |..++.+|+..|. .+|++++.+++-.+.++
T Consensus        57 is~P~~~a~--~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          57 ISAPHMHAY--ALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             ECCHHHHHH--HHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             hhhhHHHHH--HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            333444443  44555  789999999999754 7788888888763 38999999987666553

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.40  E-value=0.11  Score=36.77  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +.+++++|+|+|.+|+-+++.+..+|. +|..+.+.+
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hcCCeEEEECCCccceeeeeeeccccc-EEEEEEecc
Confidence            345899999999999999999999999 788887654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.18  E-value=0.28  Score=36.22  Aligned_cols=45  Identities=33%  Similarity=0.338  Sum_probs=34.9

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCc
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      +|.++|+|.+|.+.++-+...|..+++++++++++++.+++ +|+.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~   47 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE   47 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc
Confidence            57889999999987764444554499999999998887765 6764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.17  E-value=0.08  Score=42.38  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=28.9

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|+|+|+|+.|+.++.+++..|...|.++++.+
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            689999999999999999999976888888754

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.05  E-value=0.083  Score=42.90  Aligned_cols=42  Identities=24%  Similarity=0.165  Sum_probs=33.0

Q ss_pred             CCCEEEEECc-cHHHHHHHH-HHHH--cCCCeEEEEcCChhHHHHHH
Q 023561          201 VGSTVVIFGL-GSIGLAVAE-GARL--CGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~-la~~--~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .|++++|.|+ +++|.+.++ ||+.  .|+ +|+.+++++++++.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence            4678888898 899988664 5553  688 8999999998877664

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=92.02  E-value=0.31  Score=39.01  Aligned_cols=48  Identities=23%  Similarity=0.295  Sum_probs=41.2

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~  248 (280)
                      -.|++|+|.|-|.+|..+++++...|+ ++++++.+..+.+.+.. .|+.
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc
Confidence            578999999999999999999999999 89999988888766654 6553

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.97  E-value=0.17  Score=40.50  Aligned_cols=68  Identities=13%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             EEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHH
Q 023561          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       168 ~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  244 (280)
                      ++..+-.-.+.||++...        .....+++|++||=+|+|. |..+..+++..|. .+|++++.+++.++.+++
T Consensus        48 ~R~w~p~rSKlaa~i~~~--------l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~  116 (227)
T d1g8aa_          48 YRIWNPNRSKLGAAIMNG--------LKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVP  116 (227)
T ss_dssp             EEECCTTTCHHHHHHHTT--------CCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             EEEECCCccHHHHHHHcc--------ccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence            444444444555543311        2456789999999998754 7788899998864 389999999988777754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.74  E-value=0.085  Score=41.86  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +++||+|+ +++|.+.++.+...|+ +|+++++++++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence            68899998 9999999999999999 89999987654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.61  E-value=0.3  Score=33.37  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=40.5

Q ss_pred             CCCCCEEEEECccHHHHHH-HHHHHHcCCCeEEEEcCCh-hHHHHHHHcCCcEEE
Q 023561          199 VEVGSTVVIFGLGSIGLAV-AEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFV  251 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a-~~la~~~g~~~vi~~~~~~-~~~~~~~~~Ga~~vi  251 (280)
                      .+..+++.++|.|++|..+ +++++..|+ .|...|... ...+.+++.|+....
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~   58 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYI   58 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEE
Confidence            4566889999988888776 799999999 999999863 455666778986444

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.59  E-value=0.17  Score=36.12  Aligned_cols=37  Identities=32%  Similarity=0.449  Sum_probs=32.3

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +.++++++|+|+|.+|.=.+..++.+|. .|..+++.+
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc
Confidence            4677999999999999999999999999 888887754

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.40  E-value=0.18  Score=40.51  Aligned_cols=45  Identities=22%  Similarity=0.264  Sum_probs=32.7

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEE-cCChhHHHHH----HHcCCc
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVT  248 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~-~~~~~~~~~~----~~~Ga~  248 (280)
                      +.+||.|+ +++|.+.+..+...|+ +|+.. .+++++++.+    ++.|..
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~   52 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQ   52 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCc
Confidence            46788898 9999999999999999 77765 4565555443    345653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.33  E-value=0.4  Score=39.96  Aligned_cols=37  Identities=16%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +-++|+|+|+ |.+|...+..+...|. .|+++.|+.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcch
Confidence            4589999998 9999999999888999 78888776543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.30  E-value=0.09  Score=42.81  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=29.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|+|+|+|+.|++++..++..|. +|+++++.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            48999999999999999999999 8999987653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.27  E-value=0.087  Score=42.09  Aligned_cols=35  Identities=23%  Similarity=0.499  Sum_probs=30.7

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +.+|||+|+ +++|.+.++.+...|+ +|+.++++++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCch
Confidence            457899998 9999999999999999 8999998764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.24  E-value=0.11  Score=43.52  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=32.2

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+++|||+|+ |.+|...+..+...|. .|+++++...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            5799999998 9999999999999999 8999988654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.14  E-value=0.21  Score=37.26  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=38.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      +|.|+|.|.+|...+.-+...|. .|++.++++++.+.+++.|+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~   45 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAE   45 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhh
Confidence            47889999999998887778899 899999999999998887753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.17  Score=35.70  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -.++++|+|+|.+|+-+++.++.+|. +|.++.+.+
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            34789999999999999999999999 888888764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.02  E-value=0.17  Score=41.94  Aligned_cols=50  Identities=14%  Similarity=0.249  Sum_probs=41.7

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.+.+++++|++||=+|.|- |..++.+|+..|+ .|+++..+++..+.+++
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHH
Confidence            66788999999999998743 5678889999999 99999999887777654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.00  E-value=0.19  Score=35.82  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=31.0

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ..++++|+|+|.+|+=.++++..+|. .|.++.+.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            45799999999999999999999999 888887754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.99  E-value=0.3  Score=35.34  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+.++++++|+|+|.+|+-++..++.+|. .|.++++.+
T Consensus        31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            45678999999999999999999999999 888888754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=90.90  E-value=0.18  Score=37.39  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCC-eEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~~~~  236 (280)
                      .|++|+|+|+|..|+-++..++..+.+ +|++++..+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            489999999999999998888887743 788887654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.75  E-value=0.21  Score=38.57  Aligned_cols=40  Identities=20%  Similarity=0.126  Sum_probs=32.3

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHH
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIG  242 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~-~vi~~~~~~~~~~~~  242 (280)
                      ++|||+|+ |.+|...+..+...|.+ .|+.+.+++++.+.+
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~   45 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI   45 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc
Confidence            68999998 99999999999888863 566777777766554

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=90.70  E-value=0.32  Score=38.70  Aligned_cols=58  Identities=14%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             cchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       182 l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +..+...|.  +.+.+.+++|++||-+|.|. |..++.+++. +. +|++++.+++..+.+++
T Consensus        53 ~~~p~~~a~--ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~-~V~aiE~~~~~~~~A~~  110 (224)
T d1vbfa_          53 TTALNLGIF--MLDELDLHKGQKVLEIGTGI-GYYTALIAEI-VD-KVVSVEINEKMYNYASK  110 (224)
T ss_dssp             ECCHHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             eehhhhHHH--HHHHhhhcccceEEEecCCC-CHHHHHHHHH-hc-ccccccccHHHHHHHHH
Confidence            333444443  56788999999999999753 6677777775 44 79999999988877765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.67  E-value=0.2  Score=35.24  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++++|+|+|.+|+-+++.++.+|. .|..+.+.+
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            34899999999999999999999999 888887754

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.64  E-value=0.42  Score=33.33  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=29.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .|++|||+|+|.+|..-++.+...|+ .|++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            57899999999999999999999999 67776543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.58  E-value=0.22  Score=35.34  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +.+++++|+|+|.+|+=.++.++.+|. .|.++.+.+
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            345889999999999999999999999 777776653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.47  E-value=0.15  Score=42.59  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .++|+|+|+|..|+.++..+...|. +|.+++.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            5789999999999999998888898 899998765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.41  E-value=0.14  Score=39.44  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=27.5

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      |+|+|+|..|+.++..+...|. +|.+++..+
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            7888999999999988888998 899999864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.33  E-value=0.15  Score=40.83  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=28.6

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +.|||+|+ +++|++.++.+...|+ +|+.+++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            46789998 9999999999999999 898888764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.08  E-value=0.33  Score=38.80  Aligned_cols=40  Identities=18%  Similarity=0.121  Sum_probs=32.1

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCC------eEEEEcCChhHHHHHH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGK  243 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~------~vi~~~~~~~~~~~~~  243 (280)
                      .|||+|+ +++|++.+..+...|++      .|+..++++++++.+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~   49 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKIS   49 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHH
Confidence            3688898 99999988888888884      3888999988776553

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=90.00  E-value=0.27  Score=39.88  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=39.2

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  244 (280)
                      +...+++++|++||=.|+|. |.++..+|+..+. ..|++++.+++..+.+++
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            45678999999999998755 6778888888754 389999999998888764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=89.92  E-value=0.12  Score=41.15  Aligned_cols=31  Identities=32%  Similarity=0.387  Sum_probs=27.9

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +|+|+|+|..|+.++..+...|. +|++++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            48999999999999999999999 79999865

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.82  E-value=0.23  Score=38.19  Aligned_cols=35  Identities=31%  Similarity=0.500  Sum_probs=32.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|++|.|+|.|.+|...+++++.+|+ +|++.++..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            47899999999999999999999999 899998754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.80  E-value=0.24  Score=38.61  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=32.2

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|++|.|+|-|.+|...+++++.+|+ +|++.++...
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccc
Confidence            37999999999999999999999999 8999986543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.77  E-value=0.16  Score=40.24  Aligned_cols=31  Identities=35%  Similarity=0.456  Sum_probs=27.2

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      |+|+|+|+.|+.++..+...|. +|++++..+
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            7889999999998888888899 899998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.29  Score=34.93  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=30.6

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .++++|+|+|.+|+=.+..++.+|. +|..+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            4799999999999999999999999 888888764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.68  E-value=0.18  Score=39.45  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|++|.|+|.|.+|...+++++.+|+ +|++.++..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCcc
Confidence            36899999999999999999999999 899998753

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=89.64  E-value=0.83  Score=34.30  Aligned_cols=49  Identities=24%  Similarity=0.295  Sum_probs=41.0

Q ss_pred             HHHHcC-CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH
Q 023561          193 AWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (280)
Q Consensus       193 l~~~~~-~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~  242 (280)
                      +.+..+ .-.|++++|.|=|-+|.-.++-+|.+|+ +|++++.++-+.-.+
T Consensus        13 i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA   62 (163)
T d1v8ba1          13 LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQA   62 (163)
T ss_dssp             HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHH
T ss_pred             HHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHH
Confidence            445444 4789999999999999999999999999 999999998664444

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.60  E-value=0.16  Score=40.60  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=28.5

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      -|+|+|+|+.|+.++..+...|. +|++++.+++
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            37888999999999988888998 8999997753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.60  E-value=0.26  Score=38.30  Aligned_cols=40  Identities=38%  Similarity=0.591  Sum_probs=34.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +|.|+|.|-+|+..+..+...|. .|+++|.++++.+.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            47899999999998888888898 89999999988877653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.56  E-value=0.2  Score=35.83  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=32.0

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +.+++++|+|+|.+|+=.++.++.+|. +|.++.+++
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcc
Confidence            446899999999999999999999999 899998765

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.52  E-value=0.65  Score=36.91  Aligned_cols=34  Identities=29%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      +.||+|+ +++|.+.+..+...|+ +|++++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence            5688898 9999999999999999 89999987654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=89.48  E-value=0.48  Score=38.76  Aligned_cols=30  Identities=30%  Similarity=0.279  Sum_probs=26.4

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      +|||+|+ |.+|...+..+...|. .|++++.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            6999998 9999999988888899 8888863

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.46  E-value=0.17  Score=37.40  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=29.5

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      -.|++|||+|+|.+|.--+..+...|+ .|+++..
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            358999999999999999999999999 7777743

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.38  E-value=0.29  Score=35.06  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=31.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      +.+++++|+|+|.+|+=.++..+.+|. +|.++.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            446899999999999999999999999 888887653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.29  E-value=0.42  Score=35.62  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=38.0

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCc
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~  248 (280)
                      .+|.++|.|.+|...+.-+...|. .|.+.+++.++.+.+.+.|+.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~   46 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGAS   46 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcc
Confidence            368899999999987777777898 899999999999988877753

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.27  E-value=0.23  Score=40.63  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             CCCEEEEECc-c--HHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~-g--~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +|+++||.|+ |  ++|.+.++.+...|+ +|+..++++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence            6899999997 5  899999999999999 8888877654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.20  E-value=0.44  Score=40.41  Aligned_cols=31  Identities=32%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEc
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      |++|||+|+ |.+|...+..+...|. .|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            689999998 9999999999989998 899987

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=89.14  E-value=1.6  Score=35.33  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=46.0

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcCC
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSK  254 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~~  254 (280)
                      +.+.....+..+|+...+|..|.+++..++.+|.+-+|.+..  ++.|.+.++.+|++-++...
T Consensus        51 a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~  114 (292)
T d2bhsa1          51 AEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK  114 (292)
T ss_dssp             HHHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECT
T ss_pred             HHHhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeec
Confidence            344555666777776677999999999999999865555543  56788999999997655433

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.88  E-value=0.39  Score=39.43  Aligned_cols=51  Identities=14%  Similarity=0.255  Sum_probs=41.0

Q ss_pred             HHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       192 ~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .+.+.+++++|++||=+|.|. |..+..+++..|+ .|++++.+++..+.+++
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~   93 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQ   93 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHH
Confidence            367788999999999999743 3456778888899 89999999988777654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.82  E-value=0.27  Score=35.04  Aligned_cols=34  Identities=12%  Similarity=0.039  Sum_probs=28.9

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..++++|+|+|.+|+=.++.++.+|. .|..+.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            45789999999999999999999999 66666654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.79  E-value=0.34  Score=38.68  Aligned_cols=51  Identities=16%  Similarity=0.173  Sum_probs=39.5

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh------h-HHHHHHHcCCcEEEcCCC
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS------E-KFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~------~-~~~~~~~~Ga~~vi~~~~  255 (280)
                      +|||+|+ |.+|...+..++..|. .|+++++.+      + -.+.++....+.+++...
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhccCCCHHHHHHHHHHcCCCEEEeecc
Confidence            5899998 9999999999999999 899998754      1 124445567788887654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.78  E-value=0.84  Score=30.58  Aligned_cols=48  Identities=23%  Similarity=0.443  Sum_probs=37.3

Q ss_pred             CEEEEECccHHHHHH-HHHHHHcCCCeEEEEcCCh-hHHHHHHHcCCcEEE
Q 023561          203 STVVIFGLGSIGLAV-AEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFV  251 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a-~~la~~~g~~~vi~~~~~~-~~~~~~~~~Ga~~vi  251 (280)
                      -+|-++|.|++|..+ +++++..|+ .|...|..+ +..+.++++|+....
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~   51 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFV   51 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEES
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEe
Confidence            357777888888765 688899999 999999876 566678889986443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.21  Score=37.48  Aligned_cols=29  Identities=31%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      |+|+|+|+.|+.++..+...|. +++++++
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            7899999999999999999999 6777874

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=88.65  E-value=0.44  Score=35.42  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=32.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      ++-.+|.|+|+|.+|...+.++...+..+++.+|.++++
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~   43 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGM   43 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecccc
Confidence            556789999999999888887787787689999988765

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.64  E-value=0.2  Score=38.74  Aligned_cols=30  Identities=30%  Similarity=0.292  Sum_probs=26.4

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |+|+|+|+.|+.++..+...|. +|++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            7788999999999999999999 78888754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.58  E-value=0.8  Score=32.58  Aligned_cols=63  Identities=19%  Similarity=0.182  Sum_probs=49.8

Q ss_pred             HHHHcCCCCCCEEEEE-CccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          193 AWRTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~-G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      .++..++..-+.+++. ..-..-+.+.++++.++..++++...+++..+.++++|++.++++..
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~~  120 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPEL  120 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHHH
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHHH
Confidence            4567777777766664 33445567888999999988999988889999999999999998653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.53  E-value=0.21  Score=41.47  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|+|+|+|..|++++..++..|. .+++++..+
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            58999999999999999999999 789998764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=88.41  E-value=0.68  Score=37.63  Aligned_cols=51  Identities=22%  Similarity=0.283  Sum_probs=42.3

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  244 (280)
                      +...+++++|++||=.|+|. |.+++.+|+..+. .+|++++.+++..+.+++
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            56789999999999998765 7788889998763 289999999988877754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.38  E-value=0.29  Score=37.96  Aligned_cols=35  Identities=37%  Similarity=0.455  Sum_probs=31.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.++..
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   82 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYL   82 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCcc
Confidence            57899999999999999999999999 899988753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=88.34  E-value=0.61  Score=37.42  Aligned_cols=35  Identities=34%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEc
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      .--+|++|+|.|-|.+|..+++++...|+ +|++++
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vs   61 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVS   61 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEee
Confidence            34578999999999999999999999999 777665

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.30  E-value=0.13  Score=39.25  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ++..|+|+|+|+.|+.++..+...|. +|+++++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEee
Confidence            45679999999999999999999999 67777653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=88.22  E-value=0.43  Score=36.07  Aligned_cols=44  Identities=11%  Similarity=0.097  Sum_probs=37.1

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      ..|.++|.|.+|...+.-+...|+ .|++.+++++|.+.+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~   46 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA   46 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence            458899999999988887778899 89999999999888766543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.20  E-value=0.76  Score=37.87  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=51.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC---------C-cEEEcCCCCCCccHHHHHHHhc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---------V-TEFVNSKNCGDKSVSQVLLSIY  269 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G---------a-~~vi~~~~~~~~~~~~~v~~~~  269 (280)
                      ...++|||+|+|. |..+-.+++..+.+++.+++.+++-.+.++++-         . -+++.      .+..+.+++..
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~------~Da~~~l~~~~  151 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNAA  151 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTSC
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE------ccHHHHHhhcc
Confidence            4568999998644 455667777777779999999999888888732         1 12221      34667777766


Q ss_pred             CCCceEEEec
Q 023561          270 DLPLLTISVS  279 (280)
Q Consensus       270 ~gg~~~v~~~  279 (280)
                      .+.+|.|.+|
T Consensus       152 ~~~yDvIi~D  161 (290)
T d1xj5a_         152 EGSYDAVIVD  161 (290)
T ss_dssp             TTCEEEEEEC
T ss_pred             ccCccEEEEc
Confidence            6688888876

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.19  E-value=0.4  Score=36.76  Aligned_cols=39  Identities=18%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +|.|+|.|-+|+..+.++ +.|. .|+++|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            588899999999876655 4688 89999999999888764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.18  E-value=0.28  Score=40.23  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChh--HHHHHHHcCC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGV  247 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~--~~~~~~~~Ga  247 (280)
                      ++|||+|+ |.+|...+..+...|. .|+++++...  +.+.++.++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhcc
Confidence            58999998 9999999988888899 8999987542  2344444443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.09  E-value=0.59  Score=37.10  Aligned_cols=80  Identities=9%  Similarity=0.081  Sum_probs=53.8

Q ss_pred             eeeeEEeecccEEEcCCCCChhhhcccchhhHHHHHHHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       156 ~~~~~~~~~~~~~~iP~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |.|........-++.-+---.+-||++...        ++...+++|++||=+|+|. |..+..+++...-..|+++|.+
T Consensus        37 y~e~~~~~~~~e~r~w~p~rsklaA~i~~g--------l~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS  107 (230)
T d1g8sa_          37 YDEKIIKIGDEEYRIWNPNKSKLAAAIIKG--------LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYA  107 (230)
T ss_dssp             SSCCEEEETTEEEEECCTTTCHHHHHHHTT--------CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESC
T ss_pred             cCceeeecCCceeeeECCCccHHHHHHHhh--------HHhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCc
Confidence            555554444445665555555555544322        2456789999999999854 6677788876544589999999


Q ss_pred             hhHHHHHHH
Q 023561          236 SEKFEIGKR  244 (280)
Q Consensus       236 ~~~~~~~~~  244 (280)
                      ++-++.+++
T Consensus       108 ~~~i~~a~~  116 (230)
T d1g8sa_         108 PRIMRELLD  116 (230)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            987777765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.05  E-value=0.32  Score=38.88  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=31.3

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..+|+|+|+|++|..++..+..+|.++++.+|.+
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4799999999999999999999999999999865

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=88.03  E-value=0.29  Score=36.08  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=29.6

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      +|+|+|+|.+|.+.+..+...|. .|..+++++++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~   36 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPY   36 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHh
Confidence            68999999999988888888898 899998877543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.32  Score=40.34  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=31.9

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      +.+.....++++||-+|+| .|+++..+|+ .|++.|++++.++.
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~   69 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEI   69 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTH
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHH
Confidence            4444566789999999976 4666666665 57779999998875

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=87.91  E-value=0.71  Score=36.44  Aligned_cols=51  Identities=27%  Similarity=0.281  Sum_probs=40.3

Q ss_pred             HHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       192 ~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      ++...+++++|++||=+|.|. |..+..+++..|+ +|++++.+++-.+.+++
T Consensus        24 ~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHH
Confidence            366788999999999888643 4567778888888 89999999877666554

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.34  E-value=0.26  Score=40.30  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=26.7

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |+|+|+|..|+.++..++..|. +|++++..
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            7889999999999999999999 89999754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.30  E-value=0.5  Score=35.07  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ..+++|+|+|+|.+|.-++..+...|++.|+++.+.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            346789999999999999999999999888888664

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.25  E-value=0.27  Score=38.06  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=26.8

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |+|+|+|+.|+.++..|..+|. +|.+++..
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7889999999999999999999 78888764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.15  E-value=0.49  Score=35.63  Aligned_cols=43  Identities=21%  Similarity=0.169  Sum_probs=36.7

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga  247 (280)
                      +|-|+|.|.+|...+.-+...|+ +|.+.+++++|.+.+.+.++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence            47889999999998888888899 89999999999988876554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.13  E-value=0.63  Score=35.60  Aligned_cols=36  Identities=36%  Similarity=0.507  Sum_probs=32.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .|+++.|+|.|.+|...+++++..|+ +|++.++...
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~   78 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVS   78 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSC
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCC
Confidence            47899999999999999999999999 8999987543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.01  E-value=0.76  Score=37.50  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCC
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGAT  227 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~  227 (280)
                      .|||+|+ +++|.+.+..+...|++
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~   28 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQ   28 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCC
Confidence            4567798 99999999888888884

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.94  E-value=0.43  Score=33.74  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+++++|+|+|.+|+-++..++..|. .|..+.+.+
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            45789999999999999999999999 888888754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=86.92  E-value=0.32  Score=38.85  Aligned_cols=32  Identities=22%  Similarity=0.113  Sum_probs=27.3

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -|+|+|+|.+|+.++..+...|. +|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            48899999999998888778898 899998753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=86.85  E-value=0.44  Score=36.67  Aligned_cols=42  Identities=19%  Similarity=0.193  Sum_probs=35.5

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .+|.|+|+|..|.+.+.++...|. .|...+++++..+.+.+.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~   49 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEK   49 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhc
Confidence            369999999999998888877777 899999999888877653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.81  E-value=0.35  Score=40.24  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCCh
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~  236 (280)
                      ++|+|+|+|+.|++++..++..|. ..|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999988866655443 3899998764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.56  E-value=0.27  Score=40.50  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .|+|+|+|..|+.++..+...|. +|.+++.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            47899999999999999888898 899998754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.53  E-value=0.35  Score=37.26  Aligned_cols=30  Identities=23%  Similarity=0.269  Sum_probs=26.3

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |+|+|+|+.|+.++..|...|. +|++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            6788999999999999999999 78888754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.50  E-value=0.35  Score=37.84  Aligned_cols=32  Identities=28%  Similarity=0.289  Sum_probs=27.5

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      -|+|+|+|+.|+.++..+..+|. +|++++..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            37888999999999999999999 788887543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.45  E-value=0.2  Score=40.16  Aligned_cols=33  Identities=27%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      ++|||+|+ |.+|...+..+...|. .|++++++.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~   37 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGH-PTFLLVRES   37 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCC
Confidence            67999998 9999999999988998 788888754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.44  E-value=0.61  Score=37.45  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=28.2

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+|||+|+ |.+|...+..+...|. .|+++.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence            56999998 9999999998888998 788887753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.39  E-value=0.34  Score=37.59  Aligned_cols=31  Identities=32%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -|+|+|+|+.|+.++..+..+|. +|++++..
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~~   37 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEKR   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            36889999999999888888999 78888754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.30  E-value=0.34  Score=37.61  Aligned_cols=31  Identities=29%  Similarity=0.254  Sum_probs=27.4

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -++|+|+|+.|+.++..++.+|. +|++++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            37888999999999999999999 88888754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=86.30  E-value=0.28  Score=40.49  Aligned_cols=32  Identities=28%  Similarity=0.306  Sum_probs=25.3

Q ss_pred             EEEEECccHHHHHHHHHH-----HHcCCCeEEEEcCCh
Q 023561          204 TVVIFGLGSIGLAVAEGA-----RLCGATRIIGVDVIS  236 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la-----~~~g~~~vi~~~~~~  236 (280)
                      -|+|+|+|+.|+.++.++     +..|. +|+++++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            378999999998877666     35788 799998754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=86.20  E-value=0.7  Score=36.16  Aligned_cols=48  Identities=25%  Similarity=0.305  Sum_probs=37.7

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +...+.+++|++||=+|.|. |..+..+++. +. +|+++|.++.-++.++
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~   55 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVAS   55 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhh
Confidence            66888999999999888754 6677777764 55 8999999987666554

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.14  E-value=2.4  Score=30.56  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=41.4

Q ss_pred             EEEEECc-cHHHHHHHHHHHH-cCCCeEEEEcCChhHHHHHHHcCCcEEEcCCCCCCccHHHHHHHhc
Q 023561          204 TVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQVLLSIY  269 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~v~~~~  269 (280)
                      +|.|.|+ |-+|...++.... .+++-+-++++. +........++|-+||...  ++...+.+..+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-~~~~~~~~~~~DvvIDFS~--p~~~~~~~~~~~   65 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-DPLSLLTDGNTEVVIDFTH--PDVVMGNLEFLI   65 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-CCTHHHHTTTCSEEEECCC--TTTHHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-CchhhhccccCCEEEEccc--HHHHHHHHHHHH
Confidence            5889997 9999998887665 566445555543 3444555567899998876  344444444443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=86.13  E-value=0.66  Score=35.73  Aligned_cols=34  Identities=35%  Similarity=0.395  Sum_probs=31.2

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      |+++.|+|.|.+|...+++++..|+ +++..++..
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   80 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHR   80 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSC
T ss_pred             ccceEEeecccchHHHHHHHHhhcc-ccccccccc
Confidence            7999999999999999999999999 899988754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=86.10  E-value=0.38  Score=39.15  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=26.2

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      .|+|+|+|.+|++++.-+...|.++|++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            58999999999987766667887579999865

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=86.01  E-value=0.62  Score=35.70  Aligned_cols=36  Identities=22%  Similarity=0.102  Sum_probs=32.3

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+.++.|+|.|.+|...++.++..|. +|+..++...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   78 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRL   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCC
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeeccc
Confidence            57899999999999999999999999 8999987543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=0.47  Score=37.31  Aligned_cols=48  Identities=15%  Similarity=0.016  Sum_probs=38.7

Q ss_pred             HHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .......++.+||..|.|. |..+..||+ .|+ .|+++|.+++-++.+++
T Consensus        38 ~~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          38 DTFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HHHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHH
Confidence            3456778999999998755 677777776 699 89999999998887765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.88  E-value=2  Score=33.61  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             cchhhHHHHHHHHHHc--CCCCCCEEEEECc--cHHHHHHHHHHHHcCC---CeEEEEcCChhHHHHH
Q 023561          182 LSCGVSTGVGAAWRTA--NVEVGSTVVIFGL--GSIGLAVAEGARLCGA---TRIIGVDVISEKFEIG  242 (280)
Q Consensus       182 l~~~~~ta~~~l~~~~--~~~~g~~VlI~G~--g~~G~~a~~la~~~g~---~~vi~~~~~~~~~~~~  242 (280)
                      ++.+...|.  +.+.+  .+++|++||.+|.  |-...+...++...|.   .+|+.++.+++-.+.+
T Consensus        61 is~P~~~a~--~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a  126 (223)
T d1r18a_          61 ISAPHMHAF--ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS  126 (223)
T ss_dssp             ECCHHHHHH--HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH
T ss_pred             eehhhhHHH--HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHH
Confidence            333444443  34544  7899999999986  3333334444444453   2799999988755554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.74  E-value=0.84  Score=33.71  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      |..+|.|+|+|.+|...+.++...+..+++.+|.++++
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~   39 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNM   39 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCc
Confidence            34689999999999888888888888899999987755

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.57  E-value=1.1  Score=36.31  Aligned_cols=51  Identities=22%  Similarity=0.301  Sum_probs=42.6

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~  244 (280)
                      +...+++++|++||=.|.|. |.++..+|+..|.+ +|+.++.+++..+.+++
T Consensus        88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~  139 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARR  139 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHH
Confidence            56788999999999888654 77888999988743 89999999998888864

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.51  E-value=0.94  Score=37.27  Aligned_cols=50  Identities=22%  Similarity=0.344  Sum_probs=40.0

Q ss_pred             HHHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       192 ~l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      .+.+.+++++|++||=+|.|- |.++..+|+..|+ +|++++.+++..+.++
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~  101 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDK  101 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHH
Confidence            367889999999999998643 4467788888999 8999999988755543

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=2.5  Score=35.39  Aligned_cols=60  Identities=25%  Similarity=0.292  Sum_probs=46.3

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEc
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~  252 (280)
                      +.+...++++++|+...+|..|.+.+..++.+|.+-++++..  +++|.+.++.+|++-+..
T Consensus        88 a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v  149 (355)
T d1jbqa_          88 AERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT  149 (355)
T ss_dssp             HHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEEC
T ss_pred             HHHcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEe
Confidence            345556677777777677999999999999999965666644  457999999999976553

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.33  E-value=0.41  Score=36.79  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.2

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |+|+|+|+.|+.|+..|...|. +|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            6788999999999999999999 78888753

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.17  E-value=1.1  Score=32.93  Aligned_cols=39  Identities=28%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhH
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEK  238 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~  238 (280)
                      +.+.+|.|+|+|.+|...+..+...+ +.+++.+|.++++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            45678999999999988877777766 4579999998876

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.90  E-value=0.41  Score=37.76  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  245 (280)
                      .+|++||=+|.|. |..+..+++..+. +|++++.+++-++.+++.
T Consensus        52 ~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~   95 (229)
T d1zx0a1          52 SKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDW   95 (229)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHH
T ss_pred             cCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHH
Confidence            6789999998754 6677888876555 899999999988888763

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.89  E-value=2.1  Score=36.48  Aligned_cols=58  Identities=22%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEcCCC
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      +.+++.+|+--.+|..|.+.+..++.+|.+-++++..  +++|.+.++.+|++-++....
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~  199 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA  199 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTC
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecCcc
Confidence            4677776554456999999999999999965555543  457888999999987765543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.82  E-value=0.53  Score=36.61  Aligned_cols=33  Identities=15%  Similarity=0.127  Sum_probs=26.5

Q ss_pred             CEEEEECccHHHHHHHHHHHHc--CCCeEEEEcCCh
Q 023561          203 STVVIFGLGSIGLAVAEGARLC--GATRIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~--g~~~vi~~~~~~  236 (280)
                      .+|+|+|+|+.|+.++..++..  |. .|++++..+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            4799999999999998766544  66 888888764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=84.67  E-value=0.41  Score=35.68  Aligned_cols=33  Identities=39%  Similarity=0.452  Sum_probs=26.8

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCC-eEEEEc
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVD  233 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~  233 (280)
                      ++++|+|+|+|.+|+-++..++.+|.+ .|+...
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            578999999999999999999999875 344443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.66  E-value=0.56  Score=38.56  Aligned_cols=32  Identities=22%  Similarity=0.148  Sum_probs=28.7

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +++||+|+ |.+|...+..+...|. .|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence            68999998 9999999999988999 89999874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.55  E-value=1.1  Score=37.49  Aligned_cols=51  Identities=24%  Similarity=0.374  Sum_probs=42.4

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCC-eEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~  244 (280)
                      +...+++++|++||=.|.|. |.+++.+|+..|.+ +|+.++.+++..+.+++
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHH
Confidence            56778999999999888755 78899999998753 89999999988887764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.48  E-value=2.5  Score=29.18  Aligned_cols=54  Identities=13%  Similarity=-0.028  Sum_probs=36.5

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCC--eEEEEcCChh------------HHHHHHHcCCcEEEcC
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVISE------------KFEIGKRFGVTEFVNS  253 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~--~vi~~~~~~~------------~~~~~~~~Ga~~vi~~  253 (280)
                      +.+++++|+|+|.+|.=.+..+..++.+  .|..+.+.+.            -.+.+++.|.+-..+.
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~   85 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKE   85 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCC
Confidence            3458999999999999888777776542  6777876431            1334456777655543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.16  E-value=1.1  Score=34.89  Aligned_cols=47  Identities=21%  Similarity=0.226  Sum_probs=37.7

Q ss_pred             HcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       196 ~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      ...++||++||=+|+|. |..+..+++..+..+|+++|.+++.++.++
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~   97 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLL   97 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHH
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHH
Confidence            46789999999999754 567777888777668999999998777664

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.11  E-value=0.51  Score=38.44  Aligned_cols=31  Identities=32%  Similarity=0.482  Sum_probs=27.0

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -|+|+|+|..|+.++..+...|. +|++++..
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~   48 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKE   48 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            47889999999999988888999 78998864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.10  E-value=0.51  Score=35.86  Aligned_cols=31  Identities=16%  Similarity=0.099  Sum_probs=26.3

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      ..|+|+|+|+.|+.++..+...|. ++++++.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~   36 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEG   36 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEe
Confidence            578999999999999888888999 6777763

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.07  E-value=0.52  Score=37.72  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=26.0

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |+|+|+|.+|+.++.-+...|. +|++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            7899999999998888888899 88999764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.00  E-value=0.91  Score=33.30  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=34.1

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHH-HHcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV  247 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~Ga  247 (280)
                      +|.++|.|.+|.+.+.-+...|. ++++.+++.++.+.+ +++|+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~   45 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLAL   45 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccce
Confidence            47889999999987776666677 899999998887766 45675

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=1.4  Score=36.62  Aligned_cols=50  Identities=16%  Similarity=0.126  Sum_probs=41.4

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +.+..+++++++|+=+|.|. |..+.++|+..++..+++++.+++..+.++
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~  192 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAE  192 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            66788999999999888654 778889999999888999999987665554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=83.83  E-value=1.5  Score=31.87  Aligned_cols=36  Identities=8%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhH
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~  238 (280)
                      -++++|.|.|.+|...++.+...|. .+++++.++++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~   38 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPED   38 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchh
Confidence            3578999999999999999999998 77888877654

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=83.67  E-value=3.3  Score=33.72  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=45.1

Q ss_pred             HHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcC--ChhHHHHHHHcCCcEEEc
Q 023561          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVN  252 (280)
Q Consensus       195 ~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~Ga~~vi~  252 (280)
                      +...+.++++|+...+|.-|.+++..++..|.+.+|++..  ...|.+.++.+|+..+..
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~  113 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLT  113 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEec
Confidence            4445677777776677999999999999999976666655  356888889999977654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=83.62  E-value=1.1  Score=36.23  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=29.5

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEc
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~  233 (280)
                      --+|++|+|.|-|-+|..+++++...|+ +|+++.
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            3478999999999999999999999999 666653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.40  E-value=0.59  Score=35.94  Aligned_cols=30  Identities=40%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |+|+|+|+.|+.++..+...|. +|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            6788999999999999999999 78888753

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.37  E-value=0.58  Score=38.67  Aligned_cols=32  Identities=28%  Similarity=0.249  Sum_probs=27.7

Q ss_pred             CEE-EEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          203 STV-VIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       203 ~~V-lI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ++| ||+|+ |.+|...+..+...|. .|+++++.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            357 99998 9999999988888999 89999874

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=0.66  Score=36.35  Aligned_cols=36  Identities=17%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             CCEEEEECc-cHHHHHHHHHHHHcCC-CeEEEEcCChh
Q 023561          202 GSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISE  237 (280)
Q Consensus       202 g~~VlI~G~-g~~G~~a~~la~~~g~-~~vi~~~~~~~  237 (280)
                      .++|||+|+ |.+|...++.+...|. .+|+++.|++.
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            478999999 9999998888877774 47888887653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.30  E-value=1.2  Score=38.55  Aligned_cols=50  Identities=20%  Similarity=0.484  Sum_probs=41.8

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +++..++++|++++=+|.| .|..+.++|+..|++++++++.++...+.++
T Consensus       208 Il~~l~Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak  257 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTI  257 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            6788899999998877865 4888999999999879999999987666654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.13  E-value=0.53  Score=36.65  Aligned_cols=29  Identities=34%  Similarity=0.489  Sum_probs=26.0

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      |+|+|+|+.|+.++..|...|. +|.+++.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~-kV~viE~   34 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDK-KVMVLDF   34 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCC-CEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            7889999999999999999999 7888874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=83.12  E-value=1.1  Score=36.00  Aligned_cols=50  Identities=16%  Similarity=0.064  Sum_probs=39.4

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +.....++++.+||=+|.|. |..+..+++..|+ +|++++.++..++.+++
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhc
Confidence            44567899999999998753 6677788887888 89999999877666653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=82.97  E-value=1.6  Score=36.21  Aligned_cols=72  Identities=21%  Similarity=0.239  Sum_probs=48.5

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-c-----CC-----cEEEcCCCCCCccHHHHHHHh
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-----GV-----TEFVNSKNCGDKSVSQVLLSI  268 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~-----Ga-----~~vi~~~~~~~~~~~~~v~~~  268 (280)
                      ...++|||+|+|. |..+-.+++.....+|.+++.+++-.+.+++ +     ++     -+++.      .+..+.+++ 
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~------~Da~~~l~~-  147 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI------DDARAYLER-  147 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE------SCHHHHHHH-
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE------chHHHHhhh-
Confidence            4568999998753 5566677777666699999999998888876 2     11     12221      345666654 


Q ss_pred             cCCCceEEEec
Q 023561          269 YDLPLLTISVS  279 (280)
Q Consensus       269 ~~gg~~~v~~~  279 (280)
                      ++..+|.|.+|
T Consensus       148 ~~~~yDvIi~D  158 (312)
T d1uira_         148 TEERYDVVIID  158 (312)
T ss_dssp             CCCCEEEEEEE
T ss_pred             cCCcccEEEEe
Confidence            44578888766

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.90  E-value=1.2  Score=36.65  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             CCCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       200 ~~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      ...+++||+|+ |.+|...+..+...|. .|+++++
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            34578999998 9999999999999999 8999875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=82.75  E-value=1.3  Score=32.44  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=30.7

Q ss_pred             CCEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhHH
Q 023561          202 GSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (280)
Q Consensus       202 g~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~~  239 (280)
                      ..+|.|+|+|.+|...+..+...+ +.+++.+|.++++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            468999999999988777777766 45899999988654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=82.64  E-value=1.2  Score=32.56  Aligned_cols=36  Identities=36%  Similarity=0.498  Sum_probs=29.4

Q ss_pred             CEEEEECccHHHHHHHHHHHHcC-CCeEEEEcCChhH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEK  238 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g-~~~vi~~~~~~~~  238 (280)
                      ++|.|+|+|.+|...+..+...| +.+++.+|.++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   38 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK   38 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch
Confidence            67889999999988877777666 4589999988876

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=82.61  E-value=1.5  Score=36.03  Aligned_cols=38  Identities=26%  Similarity=0.366  Sum_probs=29.3

Q ss_pred             EEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHH
Q 023561          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (280)
Q Consensus       204 ~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~  241 (280)
                      +|||+|+ |.+|...++.+...|.-.|++++....+...
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~   40 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR   40 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhh
Confidence            5899998 9999998887777774378988776554433

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=82.55  E-value=0.82  Score=38.24  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=27.9

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      +.|||+|+ |.+|...+..+...|. .|+++++.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            67899998 9999999888888898 89999874

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.34  E-value=0.8  Score=37.52  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             CEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcC
Q 023561          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (280)
Q Consensus       203 ~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~  234 (280)
                      ++|||+|+ |.+|...+..+...|. .|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            68999998 9999999988888898 8888875

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=82.24  E-value=3.9  Score=30.01  Aligned_cols=47  Identities=23%  Similarity=0.318  Sum_probs=31.8

Q ss_pred             CEEEEECccHHHH-HHHHHHHHcCCCeEEEE-cCCh--hHHHHHHHcCCcE
Q 023561          203 STVVIFGLGSIGL-AVAEGARLCGATRIIGV-DVIS--EKFEIGKRFGVTE  249 (280)
Q Consensus       203 ~~VlI~G~g~~G~-~a~~la~~~g~~~vi~~-~~~~--~~~~~~~~~Ga~~  249 (280)
                      -+|.|+|+|.+|. ..+++++....-.++++ +++.  ...++++++|...
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~   55 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTT   55 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcc
Confidence            3689999999986 46678776644356665 4443  3456777888653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.19  E-value=1.2  Score=33.54  Aligned_cols=49  Identities=20%  Similarity=0.114  Sum_probs=35.8

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      +....++++|++||=+|+|. |..++.+|+. +. +|+++|.+++.++.+++
T Consensus        25 il~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~   73 (186)
T d1l3ia_          25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEM   73 (186)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHH
Confidence            44567899999998888643 4455566654 44 89999999987777764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.94  E-value=0.48  Score=39.37  Aligned_cols=38  Identities=26%  Similarity=0.441  Sum_probs=28.9

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChh
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~  237 (280)
                      .+.+|++||-+|+|. |+++..+|+ .|++.|++++.++.
T Consensus        30 ~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~   67 (316)
T d1oria_          30 HLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI   67 (316)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT
T ss_pred             ccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH
Confidence            456899999999864 666666665 68778999998753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=81.90  E-value=1.2  Score=32.36  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~  239 (280)
                      .+|.|+|+|.+|...+.++...+...++.+|.++++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~   38 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVP   38 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccc
Confidence            4788899999998877777767766899999877653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.88  E-value=0.64  Score=38.27  Aligned_cols=31  Identities=35%  Similarity=0.539  Sum_probs=27.0

Q ss_pred             EEEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       204 ~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      -|+|+|+|..|+.++..|...|+ +|++++..
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            47889999999999988888999 78888754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=81.62  E-value=1.2  Score=31.55  Aligned_cols=62  Identities=6%  Similarity=-0.018  Sum_probs=45.5

Q ss_pred             HHHcCCCCCCEEEEE-Cc-cHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcCCcEEEcCCC
Q 023561          194 WRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (280)
Q Consensus       194 ~~~~~~~~g~~VlI~-G~-g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~  255 (280)
                      ++..++..-+.+++. +. -..-+++...++..+..++++-..+++..+.++++|+++++++..
T Consensus        57 l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~  120 (134)
T d2hmva1          57 LLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEK  120 (134)
T ss_dssp             HHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHH
T ss_pred             hhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChHH
Confidence            345566666766654 44 344455666777788778998888889999999999999998764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.36  E-value=0.52  Score=36.55  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=26.8

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCCC------eEEEEcCCh
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGAT------RIIGVDVIS  236 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~~------~vi~~~~~~  236 (280)
                      .+|+|+|+|+.|+.++..+...|.+      .|.+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            4799999999999999887776621      688887654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=81.22  E-value=3.6  Score=31.55  Aligned_cols=57  Identities=26%  Similarity=0.431  Sum_probs=38.1

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH-cCCcEEEc
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVN  252 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~Ga~~vi~  252 (280)
                      +....+ -.|++||=+|+|. |.+++. +...|++.|++++.+++..+.+++ ...-.+++
T Consensus        41 ~~~~~d-l~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~   98 (197)
T d1ne2a_          41 IYNDGN-IGGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV   98 (197)
T ss_dssp             HHHHTS-SBTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEE
T ss_pred             HHHcCC-CCCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEE
Confidence            334434 4699999888743 444443 444677789999999999888887 33234443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.12  E-value=2.4  Score=34.59  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=49.5

Q ss_pred             CCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHcC-----C-----cEEEcCCCCCCccHHHHHHH
Q 023561          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----V-----TEFVNSKNCGDKSVSQVLLS  267 (280)
Q Consensus       198 ~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G-----a-----~~vi~~~~~~~~~~~~~v~~  267 (280)
                      .....++|||+|+|. |..+-.+++..+..+|++++.+++-.+.++++-     .     .+++.      .+..+.+++
T Consensus        75 ~~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~------~Da~~~l~~  147 (285)
T d2o07a1          75 SHPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ  147 (285)
T ss_dssp             TSSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT
T ss_pred             hCcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE------ccHHHHHhc
Confidence            345668999998643 455667777777779999999999888887631     1     12221      345566654


Q ss_pred             hcCCCceEEEec
Q 023561          268 IYDLPLLTISVS  279 (280)
Q Consensus       268 ~~~gg~~~v~~~  279 (280)
                       +...+|.|.+|
T Consensus       148 -~~~~yDvIi~D  158 (285)
T d2o07a1         148 -NQDAFDVIITD  158 (285)
T ss_dssp             -CSSCEEEEEEE
T ss_pred             -CCCCCCEEEEc
Confidence             44478888776

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=81.12  E-value=1  Score=34.76  Aligned_cols=48  Identities=13%  Similarity=0.201  Sum_probs=37.4

Q ss_pred             HHHHcCCCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHH
Q 023561          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (280)
Q Consensus       193 l~~~~~~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~  243 (280)
                      +.+..+++++++||=+|+| .|..+..+++. |. +|+++|.+++-++.++
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~   54 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVAR   54 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhh
Confidence            5678899999999999975 36666666654 66 8999999987666654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.00  E-value=1.1  Score=34.27  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             CCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       201 ~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      .+.+|.|+|.|.+|...+++++.+|+ +|+..++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            57899999999999999999999999 899998643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=80.64  E-value=0.73  Score=37.83  Aligned_cols=30  Identities=47%  Similarity=0.607  Sum_probs=26.6

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      |+|+|+|..|+.++..|...|+ +|++++..
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~-~V~llEk~   55 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGA-KVILLEKE   55 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            8889999999999888888999 79999864

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=80.56  E-value=2.8  Score=33.48  Aligned_cols=43  Identities=23%  Similarity=0.439  Sum_probs=33.0

Q ss_pred             CCCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHH
Q 023561          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (280)
Q Consensus       199 ~~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  244 (280)
                      .++|++||=+|.|. |.+++.+++ .|+ +|+++|.+++-.+.+++
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~  160 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHH
T ss_pred             cCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHH
Confidence            57899999888754 666665554 687 79999999987777663

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.37  E-value=3.5  Score=34.03  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=50.1

Q ss_pred             CCCCEEEEECccHHHHHHHHHHHHcCCCeEEEEcCChhHHHHHHHc-CC---------cEEEcCCCCCCccHHHHHHHhc
Q 023561          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV---------TEFVNSKNCGDKSVSQVLLSIY  269 (280)
Q Consensus       200 ~~g~~VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~-Ga---------~~vi~~~~~~~~~~~~~v~~~~  269 (280)
                      ...++|||+|+|. |..+-.+++..+.++|.+++.+++-.+.++++ ..         .+++.      .+..+.+++ +
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i------~Da~~~l~~-~  176 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC------GDGFEFLKN-H  176 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC------SCHHHHHHH-C
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEE------chHHHHHHh-C
Confidence            4568999998754 44566777777777999999999999999873 21         01221      446667765 4


Q ss_pred             CCCceEEEec
Q 023561          270 DLPLLTISVS  279 (280)
Q Consensus       270 ~gg~~~v~~~  279 (280)
                      ...+|.|.+|
T Consensus       177 ~~~yDvII~D  186 (312)
T d2b2ca1         177 KNEFDVIITD  186 (312)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCCCEEEEc
Confidence            5578888876

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=80.20  E-value=0.76  Score=37.74  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=26.8

Q ss_pred             EEEECccHHHHHHHHHHHHcCCCeEEEEcCCh
Q 023561          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (280)
Q Consensus       205 VlI~G~g~~G~~a~~la~~~g~~~vi~~~~~~  236 (280)
                      |+|+|+|+.|+.|+.-|...|+ +|++++...
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            7888999999999988888999 788887543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=80.14  E-value=2  Score=31.19  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=30.3

Q ss_pred             CEEEEECccHHHHHHHHHHHHcCC-CeEEEEcCChhHHH
Q 023561          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFE  240 (280)
Q Consensus       203 ~~VlI~G~g~~G~~a~~la~~~g~-~~vi~~~~~~~~~~  240 (280)
                      .+|.|+|+|.+|..++..+...+. .+++.+|.++++.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~   40 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE   40 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence            468889999999998877777764 57999998886643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.02  E-value=1.2  Score=37.03  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=29.3

Q ss_pred             CCCEEEEECc-cHHHHHHHHHHHHcCCCeEEEEcCC
Q 023561          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (280)
Q Consensus       201 ~g~~VlI~G~-g~~G~~a~~la~~~g~~~vi~~~~~  235 (280)
                      ...+|||+|+ |.+|...+..+...|. .|+++++.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~   48 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   48 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            4678999998 9999999999999998 88888753