Citrus Sinensis ID: 023599
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 280 | 2.2.26 [Sep-21-2011] | |||||||
| P28734 | 405 | Aspartate aminotransferas | N/A | no | 0.939 | 0.649 | 0.712 | 1e-112 | |
| P46644 | 449 | Aspartate aminotransferas | yes | no | 0.946 | 0.590 | 0.691 | 1e-111 | |
| P37833 | 407 | Aspartate aminotransferas | yes | no | 0.939 | 0.646 | 0.696 | 1e-109 | |
| P28011 | 418 | Aspartate aminotransferas | N/A | no | 0.992 | 0.665 | 0.659 | 1e-109 | |
| P46645 | 405 | Aspartate aminotransferas | no | no | 0.942 | 0.651 | 0.683 | 1e-108 | |
| P46646 | 403 | Aspartate aminotransferas | no | no | 0.935 | 0.650 | 0.649 | 1e-102 | |
| P26563 | 454 | Aspartate aminotransferas | N/A | no | 0.935 | 0.577 | 0.537 | 1e-76 | |
| P46248 | 453 | Aspartate aminotransferas | no | no | 0.935 | 0.578 | 0.515 | 4e-74 | |
| P33097 | 413 | Aspartate aminotransferas | yes | no | 0.939 | 0.636 | 0.496 | 3e-73 | |
| P17174 | 413 | Aspartate aminotransferas | yes | no | 0.939 | 0.636 | 0.503 | 5e-73 |
| >sp|P28734|AATC_DAUCA Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/264 (71%), Positives = 220/264 (83%), Gaps = 1/264 (0%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F V RA + PI V A+ +D SP KLNLG G YRTEEGKPL+LN V++AEQ+LVND
Sbjct: 3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S KEYLPI GL +FNKLSAKLIFGADSPAI+ENRV+TVQCLSG+GSLR+G +FLA+HY
Sbjct: 63 QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
++HTVY+ QPT+GNHP F AGL++KTY YY+P+T GLDF+GML+DLG+AP GAIVLL
Sbjct: 123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
A HNPTG+DPT +QWEQIRQLMR K LLPFFD AYQGF ++DADA VR+FVADGGE
Sbjct: 183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
CL AQSY+K MGLYGERVGALS+V
Sbjct: 243 CLAAQSYAKNMGLYGERVGALSIV 266
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Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Daucus carota (taxid: 4039) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1 |
| >sp|P46644|AAT3_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/266 (69%), Positives = 219/266 (82%), Gaps = 1/266 (0%)
Query: 14 GDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLV 73
G S F + +A + PI V A+ +DPSP+KLNLG G YRTEEGKPL+LN VR+AEQ L+
Sbjct: 45 GGSVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLI 104
Query: 74 NDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK 133
ND + KEYLPI GL EFNKLSAKLI GADSPAI+ENR++TV+CLSG+GSLR+G +FLAK
Sbjct: 105 NDRTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAK 164
Query: 134 HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193
HY+Q T+Y++QPT+GNHP F AGL +KTY YYDP T GL+FQG+L+DLGAA G+IVL
Sbjct: 165 HYHQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVL 224
Query: 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADG 252
L A HNPTG+DPT QQWEQIR+LMR K L+PFFD AYQGF ++D DA P+RMFVADG
Sbjct: 225 LHACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADG 284
Query: 253 GECLVAQSYSKTMGLYGERVGALSVV 278
GECLVAQSY+K MGLYGERVGALS+V
Sbjct: 285 GECLVAQSYAKNMGLYGERVGALSIV 310
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Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P37833|AATC_ORYSJ Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/264 (69%), Positives = 220/264 (83%), Gaps = 1/264 (0%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +A+A + PI V A+ +DPSP+K+NLG G YRTEEGKPL+LN VR+AEQ+L+N+
Sbjct: 5 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S KEYLPITGL +FNKLSAKLIFGADSPAI+ENRV+TVQCLSG+GSLR+G +FLA+HY
Sbjct: 65 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
++ T+Y+ QPT+GNHP F AGL +++Y YYDP T GLDFQG+L+DLG+APSGAIVLL
Sbjct: 125 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 184
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
A HNPTG+DPT QWEQIRQLMR K LLPFFD AYQGF ++D DA VRMFVADGGE
Sbjct: 185 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 244
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
L+AQSY+K MGLYGERVGALS+V
Sbjct: 245 LLMAQSYAKNMGLYGERVGALSIV 268
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Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P28011|AAT1_MEDSA Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/279 (65%), Positives = 223/279 (79%), Gaps = 1/279 (0%)
Query: 1 MESKNSEKAKESDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPL 60
M S+N + + DS F + RA + PI V A+ +DPSP+KLNLG G YRTEEGKPL
Sbjct: 1 MASQNITPSPTASSDSVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPL 60
Query: 61 LLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120
+L+ VR+ E+ L+ND+S +KEY+PI GL +FNKLSAKLIFGADSPAI+ENRV+TVQ LSG
Sbjct: 61 VLDVVRRVERQLLNDMSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSG 120
Query: 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGML 180
+GSLR+G +FLAKHY+Q +YL PT+GNH F AGL +KTY YY P T GLDFQG+L
Sbjct: 121 TGSLRVGGEFLAKHYHQRIIYLPTPTWGNHTKVFNLAGLTVKTYRYYAPATRGLDFQGLL 180
Query: 181 QDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMD 239
+DLG+APSG++VLL A HNPTG+DPT +QWEQIRQL+R K LLPFFD AYQGF ++D
Sbjct: 181 EDLGSAPSGSVVLLHACAHNPTGVDPTLEQWEQIRQLIRSKSLLPFFDSAYQGFASGSLD 240
Query: 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278
ADA PVR+FVADGGE LVAQSY+K MGLYGERVGALS+V
Sbjct: 241 ADAQPVRLFVADGGELLVAQSYAKNMGLYGERVGALSIV 279
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Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P46645|AAT2_ARATH Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/265 (68%), Positives = 216/265 (81%), Gaps = 1/265 (0%)
Query: 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN 74
DS F VARA + PI V A+ DPSP+K+NLG G YRTEEGKPL+L+ VR+AEQ LVN
Sbjct: 2 DSVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVN 61
Query: 75 DLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH 134
D S KEY+PI G+ +FNKLSAKLI GADSPAI E+RV+TVQCLSG+GSLR+GA+FL H
Sbjct: 62 DPSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTH 121
Query: 135 YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194
Y+Q +Y+ +PT+GNHP F AGL+++ + YYDP T GLDF+G+L+DLGAAPSGAIVLL
Sbjct: 122 YHQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLL 181
Query: 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253
A HNPTG+DPT++QWEQIRQLMR K LLPFFD AYQGF ++D DA VR FVADGG
Sbjct: 182 HACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGG 241
Query: 254 ECLVAQSYSKTMGLYGERVGALSVV 278
ECL+AQSY+K MGLYGERVGALS+V
Sbjct: 242 ECLIAQSYAKNMGLYGERVGALSIV 266
|
Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P46646|AAT4_ARATH Aspartate aminotransferase, cytoplasmic isozyme 2 OS=Arabidopsis thaliana GN=ASP4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/265 (64%), Positives = 213/265 (80%), Gaps = 3/265 (1%)
Query: 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN 74
+S V A + P+ +V+ A R+DPSP+KLNL G YRTEEGKPL+L+ VR+AEQ L N
Sbjct: 2 NSILSSVLPAPEDPVLSVIFACRDDPSPVKLNLSAGTYRTEEGKPLVLDVVRRAEQQLAN 61
Query: 75 DLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH 134
DL DKEYLP+ GLPEFNKLS KLI G DSPA+KENRV T QCLSG+GSLR+GA+FLA H
Sbjct: 62 DL--DKEYLPLNGLPEFNKLSTKLILGDDSPALKENRVVTTQCLSGTGSLRVGAEFLATH 119
Query: 135 YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194
+ +++ PT+GNHP F AGL+++ + YYDPK+ GLDF+GML+DLGAAP GAIV+L
Sbjct: 120 NKESVIFVPNPTWGNHPRIFTLAGLSVQYFRYYDPKSRGLDFKGMLEDLGAAPPGAIVVL 179
Query: 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253
QA HNPTG+DPT +QWE+IR+L+R K LLPFFD AYQGF ++DADA VRMFVADGG
Sbjct: 180 QACAHNPTGVDPTFEQWEKIRRLVRSKSLLPFFDSAYQGFASGSLDADAQAVRMFVADGG 239
Query: 254 ECLVAQSYSKTMGLYGERVGALSVV 278
ECL+AQSY+K MGLYGER+G+L++V
Sbjct: 240 ECLIAQSYAKNMGLYGERIGSLTIV 264
|
Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P26563|AATM_LUPAN Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/264 (53%), Positives = 183/264 (69%), Gaps = 2/264 (0%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S FE + A PI V AFR D S KLNLG G YRTEE +P +L V +AE L++ +
Sbjct: 52 SRFEGIPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLML-E 110
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
+KEYL I GL FNK +A+L+ GAD+PAIK+ RV+TVQ LSG+GSLR+GA + +++
Sbjct: 111 RGQNKEYLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYF 170
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
V +S PT+GNH N F A + Y YYDPKT GLDF+GM++D+ AAP G VLL
Sbjct: 171 PGAKVLISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLH 230
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
HNPTGIDPT +QWE+I +++ K +PFFD AYQGF ++D DA VR+FVA G E
Sbjct: 231 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLE 290
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
LVAQSYSK +GLY ER+GA++V+
Sbjct: 291 VLVAQSYSKNLGLYAERIGAINVI 314
|
Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Lupinus angustifolius (taxid: 3871) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P46248|AAT5_ARATH Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 179/264 (67%), Gaps = 2/264 (0%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S FE + A PI V AF+ D + MKLNLG G YRTEE +P +LN V++AE L++ +
Sbjct: 51 SRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLML-E 109
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
+KEYLPI GL FNK +A+L+FGA P IKE RV+T+Q LSG+GSLR+ A + +++
Sbjct: 110 RGDNKEYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYF 169
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
V +S PT+GNH N F A + Y YYDPKT GLDF+GM+ D+ AP G+ +LL
Sbjct: 170 PGAKVVISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLH 229
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
HNPTGIDPT +QW +I +++ K +PFFD AYQGF ++D DA VR+F G E
Sbjct: 230 GCAHNPTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGME 289
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
VAQSYSK +GLY ER+GA++VV
Sbjct: 290 FFVAQSYSKNLGLYAERIGAINVV 313
|
Important for the metabolism of amino acids and Krebs-cycle related organic acids. In plants, it is involved in nitrogen metabolism and in aspects of carbon and energy metabolism. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P33097|AATC_BOVIN Aspartate aminotransferase, cytoplasmic OS=Bos taurus GN=GOT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/270 (49%), Positives = 178/270 (65%), Gaps = 7/270 (2%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +V +A + ++ + A FREDP P K+NLG G YRT++ +P +L VR+ EQ + ND
Sbjct: 5 SIFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQRIAND 64
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYLPI GL EF +++L G DSPA++E RV VQCL G+G+LRIGA+FLA+ Y
Sbjct: 65 SSINHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQCLGGTGALRIGAEFLARWY 124
Query: 136 -----YQHTVYLSQPTYGNHPNFFAAAGLA-MKTYHYYDPKTNGLDFQGMLQDLGAAPSG 189
VY+S PT+ NH F AAG +++YHY+D GLD QG L DL AP
Sbjct: 125 NGTNNKDTPVYVSSPTWENHNGVFIAAGFKDIRSYHYWDAAKRGLDLQGFLNDLEKAPEF 184
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMF 248
+I +L A HNPTG DPT +QW+QI +M+ + L PFFD AYQGF +++ DA +R F
Sbjct: 185 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGSLEKDAWAIRYF 244
Query: 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278
V++G E AQS+SK GLY ERVG L+VV
Sbjct: 245 VSEGFELFCAQSFSKNFGLYNERVGNLTVV 274
|
Bos taurus (taxid: 9913) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P17174|AATC_HUMAN Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/270 (50%), Positives = 179/270 (66%), Gaps = 7/270 (2%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +V +A + ++ + A FREDP P K+NLG G YRT++ P +L V++ EQ + ND
Sbjct: 5 SVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIAND 64
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYLPI GL EF +++L G DSPA+KE RV VQ L G+G+LRIGADFLA+ Y
Sbjct: 65 NSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWY 124
Query: 136 -----YQHTVYLSQPTYGNHPNFFAAAGLA-MKTYHYYDPKTNGLDFQGMLQDLGAAPSG 189
VY+S PT+ NH F+AAG +++Y Y+D + GLD QG L DL AP
Sbjct: 125 NGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEF 184
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMF 248
+IV+L A HNPTGIDPT +QW+QI +M+ + L PFFD AYQGF N++ DA +R F
Sbjct: 185 SIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYF 244
Query: 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278
V++G E AQS+SK GLY ERVG L+VV
Sbjct: 245 VSEGFEFFCAQSFSKNFGLYNERVGNLTVV 274
|
Plays a key role in amino acid metabolism. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 280 | ||||||
| 255551034 | 413 | aspartate aminotransferase, putative [Ri | 0.953 | 0.646 | 0.757 | 1e-119 | |
| 224089056 | 442 | predicted protein [Populus trichocarpa] | 0.992 | 0.628 | 0.682 | 1e-117 | |
| 366984548 | 452 | putative aspartate aminotransferase 2 [G | 0.946 | 0.586 | 0.721 | 1e-114 | |
| 224089058 | 449 | predicted protein [Populus trichocarpa] | 0.953 | 0.594 | 0.705 | 1e-112 | |
| 225445206 | 411 | PREDICTED: aspartate aminotransferase, c | 0.960 | 0.654 | 0.719 | 1e-112 | |
| 312282081 | 453 | unnamed protein product [Thellungiella h | 0.946 | 0.584 | 0.706 | 1e-112 | |
| 297811267 | 449 | hypothetical protein ARALYDRAFT_487989 [ | 0.946 | 0.590 | 0.699 | 1e-111 | |
| 147799142 | 411 | hypothetical protein VITISV_020521 [Viti | 0.960 | 0.654 | 0.715 | 1e-111 | |
| 112972 | 405 | RecName: Full=Aspartate aminotransferase | 0.939 | 0.649 | 0.712 | 1e-110 | |
| 2654095 | 419 | aspartate aminotransferase cytosolic iso | 0.992 | 0.663 | 0.678 | 1e-110 |
| >gi|255551034|ref|XP_002516565.1| aspartate aminotransferase, putative [Ricinus communis] gi|223544385|gb|EEF45906.1| aspartate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/268 (75%), Positives = 232/268 (86%), Gaps = 1/268 (0%)
Query: 12 SDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQL 71
S+ SAF+ V RAADIP+YAVM A+ ED SP+KLNLG GVYR E+GKP +LN VR+AEQL
Sbjct: 6 SNESSAFKNVPRAADIPVYAVMVAYSEDASPVKLNLGIGVYREEDGKPHVLNVVRRAEQL 65
Query: 72 LVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL 131
L++D A KEYLPITGL EF+KLSA+L+FGA SPAI ENRV+TVQCLSGSGSLRIGA+FL
Sbjct: 66 LLHDKYATKEYLPITGLTEFSKLSAELVFGAGSPAITENRVTTVQCLSGSGSLRIGAEFL 125
Query: 132 AKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAI 191
AKHY+ HTVYL QPTY NHPNFF + GLA+KTY YYDPKT+GLDFQG+L+DLG+APSGAI
Sbjct: 126 AKHYHHHTVYLPQPTYANHPNFFLSVGLALKTYRYYDPKTHGLDFQGLLEDLGSAPSGAI 185
Query: 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVA 250
VLLQA GHNPTG+DPT QWEQIRQLMR K +LPFFDCAYQGFV ++D DA +RMFV
Sbjct: 186 VLLQACGHNPTGVDPTLDQWEQIRQLMRFKGILPFFDCAYQGFVSGDLDMDAQSIRMFVM 245
Query: 251 DGGECLVAQSYSKTMGLYGERVGALSVV 278
DGGECLVAQSYSK MG+Y ERVGALS+V
Sbjct: 246 DGGECLVAQSYSKIMGIYSERVGALSIV 273
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089056|ref|XP_002308617.1| predicted protein [Populus trichocarpa] gi|222854593|gb|EEE92140.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/302 (68%), Positives = 238/302 (78%), Gaps = 24/302 (7%)
Query: 1 MESKNSEKA--KESDGDSAFEQVARAADIPIYA---------------------VMAAFR 37
MES ++++ K+ +GDS FE V RA D+P+YA VM A+
Sbjct: 1 MESLSTKETTTKDCNGDSVFENVVRAPDVPVYALNCTEKFKYRVEFSKNVNYSLVMVAYS 60
Query: 38 EDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAK 97
+DPSP+KLNLG GVYRTE+GKP +LN VR+ E+LL++D+SA KEYLPITG+ EFNKLSA+
Sbjct: 61 KDPSPVKLNLGIGVYRTEDGKPHVLNVVRRVEKLLLDDVSATKEYLPITGMAEFNKLSAQ 120
Query: 98 LIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA 157
L+FGADSPA+KENRV+TVQCL+G GSLR GADFLAKHY+QHTVYLSQPTYGNHPNFF AA
Sbjct: 121 LVFGADSPAMKENRVTTVQCLAGCGSLRTGADFLAKHYHQHTVYLSQPTYGNHPNFFLAA 180
Query: 158 GLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQL 217
GL +KTY YYDP T GLDFQGML DLG+APSGAIVL Q HNPTG+DPT QWEQIRQL
Sbjct: 181 GLTLKTYRYYDPITRGLDFQGMLDDLGSAPSGAIVLFQVCSHNPTGVDPTLHQWEQIRQL 240
Query: 218 MRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276
+R K LLPFFD AYQG V ++D DA VRMFV DGGECLVA SYSK MGLYGERVGALS
Sbjct: 241 VRSKGLLPFFDNAYQGIVSGSLDMDAQSVRMFVTDGGECLVAHSYSKIMGLYGERVGALS 300
Query: 277 VV 278
+V
Sbjct: 301 IV 302
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|366984548|gb|AEX09183.1| putative aspartate aminotransferase 2 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/266 (72%), Positives = 223/266 (83%), Gaps = 1/266 (0%)
Query: 14 GDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLV 73
GDS F V RA + PI V A+ +DPSP+KLNLG G YRTEEGKPL+LN VR+AEQ+L+
Sbjct: 48 GDSVFSHVVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQMLL 107
Query: 74 NDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK 133
ND S KEYLPI G+ EFNKLSAKLIFGADSPAI+ENRV+TVQCLSG+GSLR+GA+FLA+
Sbjct: 108 NDKSRVKEYLPIVGIAEFNKLSAKLIFGADSPAIRENRVTTVQCLSGTGSLRVGAEFLAR 167
Query: 134 HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193
HY+Q T+Y+ QPT+GNHP F AGL++KTY YYDP T G++FQG+L+DLG+APSG+IVL
Sbjct: 168 HYHQKTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGMNFQGLLEDLGSAPSGSIVL 227
Query: 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADG 252
L A HNPTG+DPT QQWEQIRQLMR K LLPFFD AYQGF N+D DA +RMFVADG
Sbjct: 228 LHACAHNPTGVDPTLQQWEQIRQLMRSKALLPFFDSAYQGFASGNLDEDAQSIRMFVADG 287
Query: 253 GECLVAQSYSKTMGLYGERVGALSVV 278
GEC VAQSY+K MGLYGERVGALSVV
Sbjct: 288 GECFVAQSYAKNMGLYGERVGALSVV 313
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089058|ref|XP_002308618.1| predicted protein [Populus trichocarpa] gi|222854594|gb|EEE92141.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/268 (70%), Positives = 225/268 (83%), Gaps = 1/268 (0%)
Query: 12 SDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQL 71
SD +S F V R + PI V A+ +DPSP+KLNLG G YRTEEGKPL+LN VR+AEQL
Sbjct: 43 SDSNSVFSHVVRGPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQL 102
Query: 72 LVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL 131
LVND S KEYLPITGL EFNKLSAKL+FGA+ PAI+ENRV+TVQCLSG+GSLR+GA+FL
Sbjct: 103 LVNDRSRVKEYLPITGLAEFNKLSAKLMFGANCPAIQENRVTTVQCLSGTGSLRVGAEFL 162
Query: 132 AKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAI 191
AKH++Q T+Y+ QPT+GNHP F AGL++KTY YYDP T GL+FQG+++DL +APSGAI
Sbjct: 163 AKHHHQRTIYIPQPTWGNHPKIFTLAGLSVKTYRYYDPATRGLNFQGLVEDLNSAPSGAI 222
Query: 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVA 250
VLL A HNPTG+DPT+QQWEQIR+LMR K L+PFFD AYQGF ++DADA PVRMFVA
Sbjct: 223 VLLHACAHNPTGVDPTSQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDADAQPVRMFVA 282
Query: 251 DGGECLVAQSYSKTMGLYGERVGALSVV 278
DGGE L+AQSY+K MGLYGER+GALS+V
Sbjct: 283 DGGELLLAQSYAKNMGLYGERIGALSIV 310
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445206|ref|XP_002284313.1| PREDICTED: aspartate aminotransferase, cytoplasmic [Vitis vinifera] gi|297738807|emb|CBI28052.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/271 (71%), Positives = 225/271 (83%), Gaps = 2/271 (0%)
Query: 9 AKESDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQA 68
++ DG S F + RA + PI V A+ +D SP+KLNLG G YRTEEGKPL+LN VR+A
Sbjct: 3 SQHPDG-SVFSNIVRAPEDPILGVTVAYNKDTSPIKLNLGVGAYRTEEGKPLVLNVVRRA 61
Query: 69 EQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGA 128
EQLLVND S KEYLPI GL EFNKLSAKLIFGADSPAI+ENRV+TVQ LSG+GSLRIGA
Sbjct: 62 EQLLVNDPSRVKEYLPIVGLAEFNKLSAKLIFGADSPAIQENRVATVQGLSGTGSLRIGA 121
Query: 129 DFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188
+FLA+HYYQHT+Y+ PT+GNHP F AGL++KTY YYDP+T GLDF+G+L+DLGAAP+
Sbjct: 122 EFLARHYYQHTIYIPVPTWGNHPKIFTIAGLSVKTYRYYDPETRGLDFKGLLEDLGAAPT 181
Query: 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRM 247
GAIVLL A HNPTG+DPT +QWEQIRQLMR K LLPFFD AYQGF ++DADA VRM
Sbjct: 182 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM 241
Query: 248 FVADGGECLVAQSYSKTMGLYGERVGALSVV 278
FVADGGECL AQSY+K MGLYGERVGALS+V
Sbjct: 242 FVADGGECLAAQSYAKNMGLYGERVGALSIV 272
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312282081|dbj|BAJ33906.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/266 (70%), Positives = 221/266 (83%), Gaps = 1/266 (0%)
Query: 14 GDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLV 73
G S F + +A + PI V A+ +DPSP+KLNLG G YRTEEGKPL+LN VR+AEQ L+
Sbjct: 49 GGSVFAHLVQAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLNVVRKAEQQLI 108
Query: 74 NDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK 133
ND S KEYLPI GL EFNKLSAKLI GADSPAI+ENRV+TV+CLSG+GSLR+G +FLAK
Sbjct: 109 NDRSRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRVTTVECLSGTGSLRVGGEFLAK 168
Query: 134 HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193
HY+Q T+Y++QPT+GNHP F AGL++KTY YYDP T GL+FQG+L+DLGAAP G+IVL
Sbjct: 169 HYHQKTIYITQPTWGNHPKIFTLAGLSVKTYRYYDPSTRGLNFQGLLEDLGAAPPGSIVL 228
Query: 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADG 252
L A HNPTG+DPT QQWEQIRQLMR K L+PFFD AYQGF ++D DA P+RMFVADG
Sbjct: 229 LHACAHNPTGVDPTIQQWEQIRQLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADG 288
Query: 253 GECLVAQSYSKTMGLYGERVGALSVV 278
GECLVAQSY+K MGLYGERVGALS+V
Sbjct: 289 GECLVAQSYAKNMGLYGERVGALSIV 314
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811267|ref|XP_002873517.1| hypothetical protein ARALYDRAFT_487989 [Arabidopsis lyrata subsp. lyrata] gi|297319354|gb|EFH49776.1| hypothetical protein ARALYDRAFT_487989 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/266 (69%), Positives = 221/266 (83%), Gaps = 1/266 (0%)
Query: 14 GDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLV 73
G S F + +A + PI V A+ +DPSP+KLNLG G YRTEEGKPL+LN VR+AEQ L+
Sbjct: 45 GGSVFAHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLI 104
Query: 74 NDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK 133
ND + KEYLPI GL EFNKLSAKLI GADSPAI+ENR++TV+CLSG+GSLR+G +FLAK
Sbjct: 105 NDRTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAK 164
Query: 134 HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193
HY+Q T+Y++QPT+GNHP F AGL +KTY YYDP T GL+FQG+L+DLGAAP+G+IVL
Sbjct: 165 HYHQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAPAGSIVL 224
Query: 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADG 252
L A HNPTG+DPT QQWEQIRQLMR K L+PFFD AYQGF ++D DA P+RMFVADG
Sbjct: 225 LHACAHNPTGVDPTIQQWEQIRQLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADG 284
Query: 253 GECLVAQSYSKTMGLYGERVGALSVV 278
GECLVAQSY+K MGLYGERVGALS+V
Sbjct: 285 GECLVAQSYAKNMGLYGERVGALSIV 310
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799142|emb|CAN70394.1| hypothetical protein VITISV_020521 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/271 (71%), Positives = 224/271 (82%), Gaps = 2/271 (0%)
Query: 9 AKESDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQA 68
++ DG S F + RA + PI V A+ +D SP+KLNLG G YRTEEGKPL+L VR+A
Sbjct: 3 SQHPDG-SVFSNIVRAPEDPILGVTVAYNKDTSPIKLNLGVGAYRTEEGKPLVLKVVRRA 61
Query: 69 EQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGA 128
EQLLVND S KEYLPI GL EFNKLSAKLIFGADSPAI+ENRV+TVQ LSG+GSLRIGA
Sbjct: 62 EQLLVNDPSRVKEYLPIVGLAEFNKLSAKLIFGADSPAIQENRVATVQGLSGTGSLRIGA 121
Query: 129 DFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188
+FLA+HYYQHT+Y+ PT+GNHP F AGL++KTY YYDP+T GLDF+G+L+DLGAAP+
Sbjct: 122 EFLARHYYQHTIYIPVPTWGNHPKIFTIAGLSVKTYRYYDPETRGLDFKGLLEDLGAAPT 181
Query: 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRM 247
GAIVLL A HNPTG+DPT +QWEQIRQLMR K LLPFFD AYQGF ++DADA VRM
Sbjct: 182 GAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRM 241
Query: 248 FVADGGECLVAQSYSKTMGLYGERVGALSVV 278
FVADGGECL AQSY+K MGLYGERVGALS+V
Sbjct: 242 FVADGGECLAAQSYAKNMGLYGERVGALSIV 272
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|112972|sp|P28734.1|AATC_DAUCA RecName: Full=Aspartate aminotransferase, cytoplasmic; AltName: Full=Transaminase A gi|167546|gb|AAA33134.1| aspartate aminotransferase [Daucus carota] gi|445587|prf||1909339A Asp aminotransferase | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/264 (71%), Positives = 220/264 (83%), Gaps = 1/264 (0%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F V RA + PI V A+ +D SP KLNLG G YRTEEGKPL+LN V++AEQ+LVND
Sbjct: 3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S KEYLPI GL +FNKLSAKLIFGADSPAI+ENRV+TVQCLSG+GSLR+G +FLA+HY
Sbjct: 63 QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
++HTVY+ QPT+GNHP F AGL++KTY YY+P+T GLDF+GML+DLG+AP GAIVLL
Sbjct: 123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
A HNPTG+DPT +QWEQIRQLMR K LLPFFD AYQGF ++DADA VR+FVADGGE
Sbjct: 183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
CL AQSY+K MGLYGERVGALS+V
Sbjct: 243 CLAAQSYAKNMGLYGERVGALSIV 266
|
Source: Daucus carota Species: Daucus carota Genus: Daucus Family: Apiaceae Order: Apiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2654095|gb|AAC50015.1| aspartate aminotransferase cytosolic isozyme AAT2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/280 (67%), Positives = 227/280 (81%), Gaps = 2/280 (0%)
Query: 1 MESKNSEKAK-ESDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKP 59
M S +S A S DS F + RA + PI V A+ +DPSP+KLNLG G YRTEEGKP
Sbjct: 1 MASHDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKP 60
Query: 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119
L+LN VR+ EQ L+ND+S +KEY+PI GL +FNKLSAKLIFGADSPAI++NRV+TVQCLS
Sbjct: 61 LVLNVVRRVEQQLINDVSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLS 120
Query: 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGM 179
G+GSLR+G +FLAKHY+Q T+YL PT+GNHP F AGL++KTY YY P T GLDFQG+
Sbjct: 121 GTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVKTYRYYAPATRGLDFQGL 180
Query: 180 LQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NM 238
L+DLG+APSG+IVLL A HNPTG+DPT +QWEQIRQL+R K LLPFFD AYQGF ++
Sbjct: 181 LEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSL 240
Query: 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278
DADA PVR+FVADGGE LVAQSY+K +GLYGERVGALS+V
Sbjct: 241 DADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIV 280
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 280 | ||||||
| UNIPROTKB|P28734 | 405 | P28734 "Aspartate aminotransfe | 0.939 | 0.649 | 0.712 | 3.8e-101 | |
| TAIR|locus:2144226 | 449 | ASP3 "aspartate aminotransfera | 0.946 | 0.590 | 0.691 | 2.1e-100 | |
| UNIPROTKB|P37833 | 407 | LOC_Os01g55540 "Aspartate amin | 0.939 | 0.646 | 0.696 | 2.4e-99 | |
| TAIR|locus:2180826 | 405 | ASP2 "aspartate aminotransfera | 0.942 | 0.651 | 0.683 | 2.5e-97 | |
| TAIR|locus:2026262 | 405 | ASP4 "aspartate aminotransfera | 0.942 | 0.651 | 0.652 | 1e-93 | |
| UNIPROTKB|P26563 | 454 | P26563 "Aspartate aminotransfe | 0.935 | 0.577 | 0.537 | 2.6e-70 | |
| TAIR|locus:2116682 | 462 | ASP5 "aspartate aminotransfera | 0.935 | 0.567 | 0.515 | 5.6e-68 | |
| UNIPROTKB|P33097 | 413 | GOT1 "Aspartate aminotransfera | 0.939 | 0.636 | 0.5 | 3.6e-66 | |
| UNIPROTKB|P17174 | 413 | GOT1 "Aspartate aminotransfera | 0.939 | 0.636 | 0.507 | 4.5e-66 | |
| UNIPROTKB|A5A6K8 | 413 | GOT1 "Aspartate aminotransfera | 0.939 | 0.636 | 0.507 | 4.5e-66 |
| UNIPROTKB|P28734 P28734 "Aspartate aminotransferase, cytoplasmic" [Daucus carota (taxid:4039)] | Back alignment and assigned GO terms |
|---|
Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
Identities = 188/264 (71%), Positives = 220/264 (83%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F V RA + PI V A+ +D SP KLNLG G YRTEEGKPL+LN V++AEQ+LVND
Sbjct: 3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVND 62
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S KEYLPI GL +FNKLSAKLIFGADSPAI+ENRV+TVQCLSG+GSLR+G +FLA+HY
Sbjct: 63 QSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 122
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
++HTVY+ QPT+GNHP F AGL++KTY YY+P+T GLDF+GML+DLG+AP GAIVLL
Sbjct: 123 HEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLH 182
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
A HNPTG+DPT +QWEQIRQLMR K LLPFFD AYQGF ++DADA VR+FVADGGE
Sbjct: 183 ACAHNPTGVDPTIEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDADAQSVRIFVADGGE 242
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
CL AQSY+K MGLYGERVGALS+V
Sbjct: 243 CLAAQSYAKNMGLYGERVGALSIV 266
|
|
| TAIR|locus:2144226 ASP3 "aspartate aminotransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
Identities = 184/266 (69%), Positives = 219/266 (82%)
Query: 14 GDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLV 73
G S F + +A + PI V A+ +DPSP+KLNLG G YRTEEGKPL+LN VR+AEQ L+
Sbjct: 45 GGSVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLI 104
Query: 74 NDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK 133
ND + KEYLPI GL EFNKLSAKLI GADSPAI+ENR++TV+CLSG+GSLR+G +FLAK
Sbjct: 105 NDRTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAK 164
Query: 134 HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193
HY+Q T+Y++QPT+GNHP F AGL +KTY YYDP T GL+FQG+L+DLGAA G+IVL
Sbjct: 165 HYHQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVL 224
Query: 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADG 252
L A HNPTG+DPT QQWEQIR+LMR K L+PFFD AYQGF ++D DA P+RMFVADG
Sbjct: 225 LHACAHNPTGVDPTIQQWEQIRKLMRSKGLMPFFDSAYQGFASGSLDTDAKPIRMFVADG 284
Query: 253 GECLVAQSYSKTMGLYGERVGALSVV 278
GECLVAQSY+K MGLYGERVGALS+V
Sbjct: 285 GECLVAQSYAKNMGLYGERVGALSIV 310
|
|
| UNIPROTKB|P37833 LOC_Os01g55540 "Aspartate aminotransferase, cytoplasmic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 184/264 (69%), Positives = 220/264 (83%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +A+A + PI V A+ +DPSP+K+NLG G YRTEEGKPL+LN VR+AEQ+L+N+
Sbjct: 5 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 64
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S KEYLPITGL +FNKLSAKLIFGADSPAI+ENRV+TVQCLSG+GSLR+G +FLA+HY
Sbjct: 65 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 124
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
++ T+Y+ QPT+GNHP F AGL +++Y YYDP T GLDFQG+L+DLG+APSGAIVLL
Sbjct: 125 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 184
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
A HNPTG+DPT QWEQIRQLMR K LLPFFD AYQGF ++D DA VRMFVADGGE
Sbjct: 185 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 244
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
L+AQSY+K MGLYGERVGALS+V
Sbjct: 245 LLMAQSYAKNMGLYGERVGALSIV 268
|
|
| TAIR|locus:2180826 ASP2 "aspartate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 181/265 (68%), Positives = 216/265 (81%)
Query: 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN 74
DS F VARA + PI V A+ DPSP+K+NLG G YRTEEGKPL+L+ VR+AEQ LVN
Sbjct: 2 DSVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVN 61
Query: 75 DLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH 134
D S KEY+PI G+ +FNKLSAKLI GADSPAI E+RV+TVQCLSG+GSLR+GA+FL H
Sbjct: 62 DPSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTH 121
Query: 135 YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194
Y+Q +Y+ +PT+GNHP F AGL+++ + YYDP T GLDF+G+L+DLGAAPSGAIVLL
Sbjct: 122 YHQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLL 181
Query: 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253
A HNPTG+DPT++QWEQIRQLMR K LLPFFD AYQGF ++D DA VR FVADGG
Sbjct: 182 HACAHNPTGVDPTSEQWEQIRQLMRSKSLLPFFDSAYQGFASGSLDTDAQSVRTFVADGG 241
Query: 254 ECLVAQSYSKTMGLYGERVGALSVV 278
ECL+AQSY+K MGLYGERVGALS+V
Sbjct: 242 ECLIAQSYAKNMGLYGERVGALSIV 266
|
|
| TAIR|locus:2026262 ASP4 "aspartate aminotransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 173/265 (65%), Positives = 214/265 (80%)
Query: 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN 74
+S V A + P+ +V+ A R+DPSP+KLNL G YRTEEGKPL+L+ VR+AEQ L N
Sbjct: 2 NSILSSVLPAPEDPVLSVIFACRDDPSPVKLNLSAGTYRTEEGKPLVLDVVRRAEQQLAN 61
Query: 75 DLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH 134
DLS DKEYLP+ GLPEFNKLS KLI G DSPA+KENRV T QCLSG+GSLR+GA+FLA H
Sbjct: 62 DLSRDKEYLPLNGLPEFNKLSTKLILGDDSPALKENRVVTTQCLSGTGSLRVGAEFLATH 121
Query: 135 YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194
+ +++ PT+GNHP F AGL+++ + YYDPK+ GLDF+GML+DLGAAP GAIV+L
Sbjct: 122 NKESVIFVPNPTWGNHPRIFTLAGLSVQYFRYYDPKSRGLDFKGMLEDLGAAPPGAIVVL 181
Query: 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253
QA HNPTG+DPT +QWE+IR+L+R K LLPFFD AYQGF ++DADA VRMFVADGG
Sbjct: 182 QACAHNPTGVDPTFEQWEKIRRLVRSKSLLPFFDSAYQGFASGSLDADAQAVRMFVADGG 241
Query: 254 ECLVAQSYSKTMGLYGERVGALSVV 278
ECL+AQSY+K MGLYGER+G+L++V
Sbjct: 242 ECLIAQSYAKNMGLYGERIGSLTIV 266
|
|
| UNIPROTKB|P26563 P26563 "Aspartate aminotransferase P2, mitochondrial" [Lupinus angustifolius (taxid:3871)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 142/264 (53%), Positives = 183/264 (69%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S FE + A PI V AFR D S KLNLG G YRTEE +P +L V +AE L++ +
Sbjct: 52 SRFEGIPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLML-E 110
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
+KEYL I GL FNK +A+L+ GAD+PAIK+ RV+TVQ LSG+GSLR+GA + +++
Sbjct: 111 RGQNKEYLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYF 170
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
V +S PT+GNH N F A + Y YYDPKT GLDF+GM++D+ AAP G VLL
Sbjct: 171 PGAKVLISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLH 230
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
HNPTGIDPT +QWE+I +++ K +PFFD AYQGF ++D DA VR+FVA G E
Sbjct: 231 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGLE 290
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
LVAQSYSK +GLY ER+GA++V+
Sbjct: 291 VLVAQSYSKNLGLYAERIGAINVI 314
|
|
| TAIR|locus:2116682 ASP5 "aspartate aminotransferase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 136/264 (51%), Positives = 179/264 (67%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S FE + A PI V AF+ D + MKLNLG G YRTEE +P +LN V++AE L++ +
Sbjct: 51 SRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLML-E 109
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
+KEYLPI GL FNK +A+L+FGA P IKE RV+T+Q LSG+GSLR+ A + +++
Sbjct: 110 RGDNKEYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYF 169
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
V +S PT+GNH N F A + Y YYDPKT GLDF+GM+ D+ AP G+ +LL
Sbjct: 170 PGAKVVISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLH 229
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGE 254
HNPTGIDPT +QW +I +++ K +PFFD AYQGF ++D DA VR+F G E
Sbjct: 230 GCAHNPTGIDPTPEQWVKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFAERGME 289
Query: 255 CLVAQSYSKTMGLYGERVGALSVV 278
VAQSYSK +GLY ER+GA++VV
Sbjct: 290 FFVAQSYSKNLGLYAERIGAINVV 313
|
|
| UNIPROTKB|P33097 GOT1 "Aspartate aminotransferase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 135/270 (50%), Positives = 180/270 (66%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +V +A + ++ + A FREDP P K+NLG G YRT++ +P +L VR+ EQ + ND
Sbjct: 5 SIFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQRIAND 64
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYLPI GL EF +++L G DSPA++E RV VQCL G+G+LRIGA+FLA+ Y
Sbjct: 65 SSINHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQCLGGTGALRIGAEFLARWY 124
Query: 136 Y----QHT-VYLSQPTYGNHPNFFAAAGLA-MKTYHYYDPKTNGLDFQGMLQDLGAAPSG 189
+ T VY+S PT+ NH F AAG +++YHY+D GLD QG L DL AP
Sbjct: 125 NGTNNKDTPVYVSSPTWENHNGVFIAAGFKDIRSYHYWDAAKRGLDLQGFLNDLEKAPEF 184
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMF 248
+I +L A HNPTG DPT +QW+QI +M+ + L PFFD AYQGF +++ DA +R F
Sbjct: 185 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGSLEKDAWAIRYF 244
Query: 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278
V++G E AQS+SK GLY ERVG L+VV
Sbjct: 245 VSEGFELFCAQSFSKNFGLYNERVGNLTVV 274
|
|
| UNIPROTKB|P17174 GOT1 "Aspartate aminotransferase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 137/270 (50%), Positives = 182/270 (67%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +V +A + ++ + A FREDP P K+NLG G YRT++ P +L V++ EQ + ND
Sbjct: 5 SVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIAND 64
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYLPI GL EF +++L G DSPA+KE RV VQ L G+G+LRIGADFLA+ Y
Sbjct: 65 NSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWY 124
Query: 136 Y----QHT-VYLSQPTYGNHPNFFAAAGLA-MKTYHYYDPKTNGLDFQGMLQDLGAAPSG 189
++T VY+S PT+ NH F+AAG +++Y Y+D + GLD QG L DL AP
Sbjct: 125 NGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEF 184
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMF 248
+IV+L A HNPTGIDPT +QW+QI +M+ + L PFFD AYQGF N++ DA +R F
Sbjct: 185 SIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYF 244
Query: 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278
V++G E AQS+SK GLY ERVG L+VV
Sbjct: 245 VSEGFEFFCAQSFSKNFGLYNERVGNLTVV 274
|
|
| UNIPROTKB|A5A6K8 GOT1 "Aspartate aminotransferase, cytoplasmic" [Pan troglodytes (taxid:9598)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 137/270 (50%), Positives = 182/270 (67%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +V +A + ++ + A FREDP P K+NLG G YRT++ P +L V++ EQ + ND
Sbjct: 5 SVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIAND 64
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYLPI GL EF +++L G DSPA+KE RV VQ L G+G+LRIGADFLA+ Y
Sbjct: 65 NSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWY 124
Query: 136 Y----QHT-VYLSQPTYGNHPNFFAAAGLA-MKTYHYYDPKTNGLDFQGMLQDLGAAPSG 189
++T VY+S PT+ NH F+AAG +++Y Y+D + GLD QG L DL AP
Sbjct: 125 NGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEF 184
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMF 248
+IV+L A HNPTGIDPT +QW+QI +M+ + L PFFD AYQGF N++ DA +R F
Sbjct: 185 SIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYF 244
Query: 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278
V++G E AQS+SK GLY ERVG L+VV
Sbjct: 245 VSEGFEFFCAQSFSKNFGLYNERVGNLTVV 274
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P28734 | AATC_DAUCA | 2, ., 6, ., 1, ., 1 | 0.7121 | 0.9392 | 0.6493 | N/A | no |
| P17174 | AATC_HUMAN | 2, ., 6, ., 1, ., 1 | 0.5037 | 0.9392 | 0.6368 | yes | no |
| P37833 | AATC_ORYSJ | 2, ., 6, ., 1, ., 1 | 0.6969 | 0.9392 | 0.6461 | yes | no |
| A5A6K8 | AATC_PANTR | 2, ., 6, ., 1, ., 1 | 0.5037 | 0.9392 | 0.6368 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.921 |
| 4th Layer | 2.6.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 280 | |||
| PLN02397 | 423 | PLN02397, PLN02397, aspartate transaminase | 1e-169 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 1e-131 | |
| PRK09257 | 396 | PRK09257, PRK09257, aromatic amino acid aminotrans | 1e-125 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 1e-116 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 3e-64 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 3e-27 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 8e-07 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 3e-06 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 3e-05 |
| >gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase | Back alignment and domain information |
|---|
Score = 473 bits (1219), Expect = e-169
Identities = 176/266 (66%), Positives = 204/266 (76%), Gaps = 2/266 (0%)
Query: 14 GDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLV 73
S FE V A PI V AF DPSP+KLNLG G YRTEEGKP++LN VR+AEQ L+
Sbjct: 20 ASSRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLL 79
Query: 74 NDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK 133
S +KEYLPI GL EFNKLSAKL +GADSPAIKENRV+TVQCLSG+GSLR+GA+FLA+
Sbjct: 80 -AGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLAR 138
Query: 134 HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193
Y T+Y+ PT+GNH N F AG+ ++TY YYDPKT GLDF G+L+DL AAP G+ VL
Sbjct: 139 FYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVL 198
Query: 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADG 252
L A HNPTG+DPT +QWEQI L++ K LPFFD AYQGF ++DADA VRMFV DG
Sbjct: 199 LHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDG 258
Query: 253 GECLVAQSYSKTMGLYGERVGALSVV 278
E LVAQSY+K MGLYGERVGALSVV
Sbjct: 259 HEILVAQSYAKNMGLYGERVGALSVV 284
|
Length = 423 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-131
Identities = 145/266 (54%), Positives = 189/266 (71%), Gaps = 3/266 (1%)
Query: 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN 74
DS F QV PI + AAF+ DPSP K+NLG G YR E GKP +L +VR+AE+++
Sbjct: 2 DSLFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIA- 60
Query: 75 DLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH 134
+ + DKEYLPI GL F + + KL+FG S A+ E R++TVQ LSG+G+LR+G +FL +
Sbjct: 61 EKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRF 120
Query: 135 YYQ-HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193
TVY+S PT+ NH N F +AGL +K Y YYDPKT GLDF GML+DL AP+G++VL
Sbjct: 121 LPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVL 180
Query: 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADG 252
L A HNPTG+DPT +QW++I +M+ K L+PFFD AYQGF ++D DA +R+F G
Sbjct: 181 LHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERG 240
Query: 253 GECLVAQSYSKTMGLYGERVGALSVV 278
E LVAQS+SK MGLYGER+GAL +V
Sbjct: 241 VEFLVAQSFSKNMGLYGERIGALHIV 266
|
Length = 404 |
| >gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 362 bits (931), Expect = e-125
Identities = 133/261 (50%), Positives = 174/261 (66%), Gaps = 1/261 (0%)
Query: 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS 77
FE + A PI +M AFR DP P K+NLG GVY+ E+G+ +L AV++AE L+ +
Sbjct: 2 FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET 61
Query: 78 ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ 137
K YLPI GL + + +L+FGADSPA+ RV+TVQ G+G+LR+GADFL + +
Sbjct: 62 T-KNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPD 120
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
V++S PT+ NH F AAGL +KTY YYD T GLDF ML DL AP+G +VLL
Sbjct: 121 AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGC 180
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
HNPTG D T +QW+++ +L++ + L+PF D AYQGF ++ DA +R F A G E LV
Sbjct: 181 CHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLV 240
Query: 258 AQSYSKTMGLYGERVGALSVV 278
A S+SK GLYGERVGALSVV
Sbjct: 241 ASSFSKNFGLYGERVGALSVV 261
|
Length = 396 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 338 bits (869), Expect = e-116
Identities = 141/261 (54%), Positives = 184/261 (70%), Gaps = 1/261 (0%)
Query: 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS 77
FE++ A PI + AF+ DP P K+NLG GVY+ E+GK +L AV++AE+ L+
Sbjct: 2 FEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQ-E 60
Query: 78 ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ 137
K YLPI GLPEF + KL+FGADSPA+ E+RV+TVQ L G+G+LR+ ADFLA+ +
Sbjct: 61 KTKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPD 120
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
TV++S PT+ NH F AAGL ++TY YYD +T GLDF GML DL AP G++VLL
Sbjct: 121 ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGC 180
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
HNPTGIDPT +QW+++ L++ + L+PFFD AYQGF ++ DA +R+F G E LV
Sbjct: 181 CHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLV 240
Query: 258 AQSYSKTMGLYGERVGALSVV 278
A S+SK GLYGERVGALSVV
Sbjct: 241 ASSFSKNFGLYGERVGALSVV 261
|
Length = 396 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 3e-64
Identities = 76/237 (32%), Positives = 106/237 (44%), Gaps = 7/237 (2%)
Query: 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFG 101
K+NLG Y + L AV +AE+ Y P GLPE + AK +
Sbjct: 1 TDKINLGSNEYLGDS---GTLPAVAKAEKDA-LAGGTRNLYGPTDGLPELREALAKFLG- 55
Query: 102 ADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAM 161
SP +K +R + V SG+G+ FL + + + PTY ++ F AG +
Sbjct: 56 -RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEV 114
Query: 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK 221
Y Y LDF + L A G V+L S HNPTG T ++ E++ L +
Sbjct: 115 VRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEH 174
Query: 222 RLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278
+L D AY GFV DA+ R +A+G LV S+SK GL G RVG +
Sbjct: 175 NILLLVDEAYAGFVFG-SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGN 230
|
Length = 357 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-27
Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 15/231 (6%)
Query: 45 LNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADS 104
++L G +L A + Y P GLPE + A+ +
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAA------LRAGLLGYYPDPGLPELREAIAEWLGRRGG 54
Query: 105 PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTY 164
+ + V +L + L V + PTY + AG +
Sbjct: 55 VDVPPEEI--VVTNGAQEALSLLLRALLNP--GDEVLVPDPTYPGYEAAARLAGAEVVPV 110
Query: 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLL 224
+ G L + P ++ L + +NPTG + ++ E++ +L + +L
Sbjct: 111 PLDEE--GGFLLDLELLEAAKTPKTKLLYL-NNPNNPTGAVLSEEELEELAELAKKHGIL 167
Query: 225 PFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGAL 275
D AY V D + P + +V +S+SKT GL G R+G L
Sbjct: 168 IISDEAYAELV--YDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYL 216
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 145 PTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSG---AIVLLQASGHNP 201
P Y ++ AG F+ L+DL AA + AI+L S +NP
Sbjct: 121 PGYPSYEAAVKLAGGKP---VPVPLDEEENGFKPDLEDLEAAITPKTKAIIL--NSPNNP 175
Query: 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF-VADGGECLVA-Q 259
TG + ++ + I +L R ++ D Y+ V + A + +A + +
Sbjct: 176 TGAVYSKEELKAIVELAREHDIIIISDEIYEELVYD---GAEHPSILELAGARDRTITIN 232
Query: 260 SYSKTMGLYGERVG 273
S+SKT G+ G R+G
Sbjct: 233 SFSKTYGMTGWRIG 246
|
Length = 393 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%)
Query: 137 QHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQA 196
TV + +PT+ + AG K LD +L + +
Sbjct: 99 GDTVLIPEPTFSMYEIAAQLAGA---EVVKVPLKEFRLDLDAILAAIRDKTKLVFL---C 152
Query: 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256
+ +NPTG ++ + + + L+ D AY F +L + +
Sbjct: 153 NPNNPTGTLLPREELRALLEALPEGGLV-VIDEAYIEFS---PESSLE---LLKYPPNLI 205
Query: 257 VAQSYSKTMGLYGERVG 273
V +++SK GL G RVG
Sbjct: 206 VLRTFSKAFGLAGLRVG 222
|
Length = 356 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 54 TEEGKPLLLNAVRQAEQLLVNDLSADK--EYLPITGLPEFNKLSAKLIFGADSPAIKENR 111
TE+G P+ L++++ L+NDL+ D+ Y P G+PE L + + ++P++ +
Sbjct: 14 TEKGGPMYLSSLQD----LLNDLTPDEIFPYAPPQGIPELRDLWQEKML-RENPSLSGKK 68
Query: 112 VSTVQCLSG-SGSLRIGAD-FLAKHYYQHTVYLSQPTYGNHPNFFAAAGLA-MKTYHYYD 168
+S + + L + AD F+ + TV L +GN+ F A + TY +D
Sbjct: 69 MSLPIVTNALTHGLSLVADLFVDQ---GDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFD 125
Query: 169 PKTNGLDFQGMLQDL-GAAPSGAIVLLQASGHNPTGIDPTAQQWEQI 214
+ G D + + L A G ++++ +NPTG PT ++ I
Sbjct: 126 -EDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAI 171
|
Length = 388 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 280 | |||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.98 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.98 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.98 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.97 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.97 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.97 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.97 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.96 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.96 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.95 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.93 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.9 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.9 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.89 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.89 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.89 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.89 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.89 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.88 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.88 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.87 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.86 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.86 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.85 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.84 | |
| PLN02721 | 353 | threonine aldolase | 99.84 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.84 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.83 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.83 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.83 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.83 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.83 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.83 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.83 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.83 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.82 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.82 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.81 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.81 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.81 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.81 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.81 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.81 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.81 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.8 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.8 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.8 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.8 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.8 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.8 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.8 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.8 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.79 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.79 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.79 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.79 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.78 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.78 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.78 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.78 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.78 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.78 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.78 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.78 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.78 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.78 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.77 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.77 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.77 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.77 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.77 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.77 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.77 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.77 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.77 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.76 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.76 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.76 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.76 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.75 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.75 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.75 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.73 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.73 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.72 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.72 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.72 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.72 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.71 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.71 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.71 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.71 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.71 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.71 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.7 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.7 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.7 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.7 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.7 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.69 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.68 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.68 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.67 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.66 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.66 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.66 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.65 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.65 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.64 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.64 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.63 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.63 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.63 | |
| PLN02651 | 364 | cysteine desulfurase | 99.63 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.62 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.62 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.6 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.6 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.58 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.58 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.56 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.56 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.54 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.53 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.53 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.52 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.51 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.5 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.5 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.48 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.47 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.47 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.46 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.46 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.44 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.44 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.43 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.42 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.42 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.41 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.41 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.4 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.4 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.39 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.38 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.38 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.37 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.35 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.34 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.33 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.31 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.3 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.29 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.26 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.26 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.25 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.25 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.22 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.21 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.21 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.17 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.15 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.14 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.12 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.12 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.11 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.11 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.1 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.1 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.04 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.04 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.03 | |
| PLN02263 | 470 | serine decarboxylase | 99.03 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.02 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 98.97 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 98.96 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 98.95 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.91 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 98.91 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 98.9 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 98.88 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 98.86 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.85 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 98.84 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 98.82 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.79 | |
| PLN02880 | 490 | tyrosine decarboxylase | 98.77 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 98.77 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 98.75 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 98.74 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 98.74 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 98.73 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 98.73 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 98.73 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.73 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.73 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 98.71 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.7 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.7 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.69 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.68 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.68 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.68 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.66 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.66 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 98.65 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.63 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.63 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 98.61 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 98.61 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.61 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 98.59 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 98.58 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.54 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.5 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 98.49 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 98.46 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.46 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.45 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.45 | |
| PRK07046 | 453 | aminotransferase; Validated | 98.44 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.44 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 98.43 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 98.42 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.41 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 98.4 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.39 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 98.39 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 98.37 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.36 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 98.36 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.36 | |
| PRK07678 | 451 | aminotransferase; Validated | 98.34 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.34 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.32 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.3 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.29 | |
| PRK06105 | 460 | aminotransferase; Provisional | 98.29 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.28 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.27 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 98.26 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 98.24 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.24 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 98.23 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 98.22 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 98.22 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.21 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 98.14 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 98.09 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 98.08 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 98.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 97.99 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 97.93 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 97.93 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 97.91 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 97.89 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 97.66 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 97.64 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 97.6 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 97.58 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 97.49 | |
| PLN02452 | 365 | phosphoserine transaminase | 97.45 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 97.4 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.36 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 97.35 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 97.29 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 97.24 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 97.18 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 97.09 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 97.04 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 96.77 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 96.66 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 96.6 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 96.49 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.26 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.22 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 95.75 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 95.58 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 95.57 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 91.71 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 91.32 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 90.63 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 89.84 | |
| cd06568 | 329 | GH20_SpHex_like A subgroup of the Glycosyl hydrola | 87.36 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 86.1 | |
| cd02742 | 303 | GH20_hexosaminidase Beta-N-acetylhexosaminidases o | 85.02 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 84.34 | |
| cd06562 | 348 | GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c | 82.21 | |
| cd06570 | 311 | GH20_chitobiase-like_1 A functionally uncharacteri | 80.76 |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=336.73 Aligned_cols=222 Identities=18% Similarity=0.218 Sum_probs=193.5
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCC-eEEeecccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENR-VSTVQCLSG 120 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~-i~~v~t~g~ 120 (280)
.++|+|++|+| +. +.|....+++.+.+. .+.. +|++..|.++||++|++++.++++..+.+++ |++ |+|+
T Consensus 28 ~~vi~l~iG~P-d~---~~p~~i~~a~~~a~~--~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiiv--t~Ga 98 (393)
T COG0436 28 EDVIDLSIGEP-DF---PTPEHIIEAAIEALE--EGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIV--TAGA 98 (393)
T ss_pred CCEEEeCCCCC-CC---CCCHHHHHHHHHHHh--cccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCCH
Confidence 58999999996 44 467777777777666 3322 7889999999999999999888776666666 888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC-CCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP-KTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
++|+.++ +++++.|||+|++++|+|+.|...+...|++++.+++..+ .+|.+|++.+++++.++++ ++++||||
T Consensus 99 ~~al~~~--~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk---~i~ln~P~ 173 (393)
T COG0436 99 KEALFLA--FLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTK---AIILNSPN 173 (393)
T ss_pred HHHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccce---EEEEeCCC
Confidence 9999999 8999999999999999999999999999999999998323 4799999999999988665 99999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++++++++|+++|++|+++||+||+|.+|.|+.. .+.++.++.+..+++|++.||||+|+|+|||+||+++.
T Consensus 174 NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~-~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~ 251 (393)
T COG0436 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA-EHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGP 251 (393)
T ss_pred CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC-CcCCHhhcCCCcceEEEEecccccccccccceeEeecC
Confidence 9999999999999999999999999999999999999743 34445555444579999999999999999999999976
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=329.89 Aligned_cols=259 Identities=51% Similarity=0.885 Sum_probs=206.3
Q ss_pred cccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHH
Q 023599 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAK 97 (280)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~ 97 (280)
|+++...+++.+......++....+++|+|+.|.|.+++..++..+.+.++..++.+ .....+|.+..|.++||+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~-~~~~~~Y~~~~G~~~lR~aia~ 80 (396)
T PRK09257 2 FEHLEAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLE-TETTKNYLPIEGLAAYRQAVQE 80 (396)
T ss_pred cccCCCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcc-cccCCCcCCCCCCHHHHHHHHH
Confidence 667777777777666666654445688999999874443333334667777666553 2235679999999999999999
Q ss_pred HHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHH
Q 023599 98 LIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 98 ~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 177 (280)
|+.+.++..+.+++|.++.|+|+++|+.++.+++..+.+||+|++++|+|+.|...++..|++++.+++.+++++++|++
T Consensus 81 ~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~ 160 (396)
T PRK09257 81 LLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFD 160 (396)
T ss_pred HhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHH
Confidence 99877665557788722239999999999954455568999999999999999999999999999999844456899999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
.+++.+.+...+.++++++|||||||.+++.+++++|+++|++|+++||+||+|.+|.++...+..++.++.+..+++|+
T Consensus 161 ~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~ 240 (396)
T PRK09257 161 AMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLV 240 (396)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEE
Confidence 99998875433356888899999999999999999999999999999999999999987422234555555545578999
Q ss_pred EecccccccccccccceEEE
Q 023599 258 AQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~ 277 (280)
++||||+|+++|||+||+++
T Consensus 241 i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 241 ASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred EEEcCCcCccccccceeEEE
Confidence 99999999999999999985
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=329.60 Aligned_cols=261 Identities=54% Similarity=0.929 Sum_probs=212.2
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
++|.++...+.+.+..+.+..++..++++++|+.|.|.++++...+.+.+.++.+.+.. .....+|.+..|.++||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~Y~~~~G~~~lR~ai 81 (404)
T PTZ00376 3 SLFSQVPLGPPDPILGLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAE-KNLDKEYLPIEGLQSFIEAA 81 (404)
T ss_pred hhhhcCCcCCCChHHHHHHHHhhcCCcccEecccceeECCCCCEehhhHHHHHHHHhcc-ccCCCCCCCCCCCHHHHHHH
Confidence 45788877777777777776655445688999999975666666777788877766552 23357899999999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHH-HhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCc
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL-AKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGL 174 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~-~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 174 (280)
++|+.+.++..+++++|++.+|.|+++|+.++..++ +++.+||+|++++|+|+.|...++..|++++.+++.+++++++
T Consensus 82 a~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~ 161 (404)
T PTZ00376 82 QKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGL 161 (404)
T ss_pred HHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCc
Confidence 999977765556788988545999999999884332 5678999999999999999999999999999999844456899
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhhcCC
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVADGG 253 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~ 253 (280)
|++.+++++.+.+++.++++++|||||||.+++.+++++|+++|++|+++||+||+|.+|.++.. .+..++..+.+..+
T Consensus 162 d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~ 241 (404)
T PTZ00376 162 DFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGV 241 (404)
T ss_pred CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCC
Confidence 99999999865333346888899999999999999999999999999999999999999998521 12334455544456
Q ss_pred eEEEEecccccccccccccceEEE
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
++|+++||||+|++||||+||+++
T Consensus 242 ~vi~i~SfSK~~~~~GlRvG~~~~ 265 (404)
T PTZ00376 242 EFLVAQSFSKNMGLYGERIGALHI 265 (404)
T ss_pred cEEEEEeCCCcccccccccceEEE
Confidence 899999999999999999999853
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=320.78 Aligned_cols=261 Identities=67% Similarity=1.069 Sum_probs=209.5
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
++|+++...+...+....+.++.+..+..++|+.|.+.++++.+...+.+.++...+.. .+...+|++..|.++||+++
T Consensus 22 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~-~~~~~~Y~~~~G~~~LR~ai 100 (423)
T PLN02397 22 SRFEHVEPAPPDPILGVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLA-GSRNKEYLPIEGLAEFNKLS 100 (423)
T ss_pred hHHHcCCcCCCChHHHHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhhc-cCCCCCCCCcCCCHHHHHHH
Confidence 46888888888888888887766666788999999855777666667888887766642 34456899999999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcC
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLD 175 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 175 (280)
++|+.+.+.....+++|..+.+.+++++..++..++..+.|||+|++++|+|+.|...++..|++++.+++.+++++++|
T Consensus 101 a~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d 180 (423)
T PLN02397 101 AKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLD 180 (423)
T ss_pred HHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccC
Confidence 99997776544445556444466666665555446666679999999999999999999999999999998434458899
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhhcCCe
Q 023599 176 FQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVADGGE 254 (280)
Q Consensus 176 ~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~ 254 (280)
++.+++.+.+.+++.+++++++||||||.+++.+++++|+++|++|+++||+||+|.+|.++.. .+..++..+....++
T Consensus 181 ~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 260 (423)
T PLN02397 181 FDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHE 260 (423)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCc
Confidence 9999988865434457999999999999999999999999999999999999999999998531 133444455444568
Q ss_pred EEEEecccccccccccccceEEE
Q 023599 255 CLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 255 ~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+|+++||||+|+++|||+||+++
T Consensus 261 vI~~~SfSK~~~~~G~RvG~~v~ 283 (423)
T PLN02397 261 ILVAQSYAKNMGLYGERVGALSV 283 (423)
T ss_pred EEEEEECcccCCCccccceEEEE
Confidence 99999999999999999999963
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=313.65 Aligned_cols=220 Identities=18% Similarity=0.167 Sum_probs=187.6
Q ss_pred eecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccc-cCCCeEEeecccchhHHH
Q 023599 47 LGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAI-KENRVSTVQCLSGSGSLR 125 (280)
Q Consensus 47 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~-~~~~i~~v~t~g~~~al~ 125 (280)
|++|.| |++ .|..+.+++ +.+.. ....++|++.+|.++|+++|++.+....+... ..++|++ |.|+.+++.
T Consensus 36 LgqGfp-~~~---~P~fv~ea~-~~~~~-~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlV--T~GA~~ai~ 107 (420)
T KOG0257|consen 36 LGQGFP-DFP---PPKFVTEAA-KNAAK-EPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLV--TAGANEAIS 107 (420)
T ss_pred ccCCCC-CCC---CcHHHHHHH-HHHhc-cchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEE--ecCchHHHH
Confidence 999997 554 333333333 33332 22478999999999999999999766444333 3567888 999999999
Q ss_pred HHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee------cCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 126 IGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY------DPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 126 ~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~------~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
.+ +++++.+||+|+|.+|.|+.|...++..|.+++.+++. ...+|.+|++.++.++.++++ +|++|+||
T Consensus 108 ~~--~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk---~Ii~ntPh 182 (420)
T KOG0257|consen 108 SA--LLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTK---AIILNTPH 182 (420)
T ss_pred HH--HHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCcc---EEEEeCCC
Confidence 99 89999999999999999999999999999999999984 255799999999999999877 99999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||||.++++++|++|+++|++||++||+||+|..+.+++ ..+..+.+++++.+++|.++||||+||++|||+||++.+.
T Consensus 183 NPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~-~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~ 261 (420)
T KOG0257|consen 183 NPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDG-NKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPK 261 (420)
T ss_pred CCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCC-CcceeeecCCchhheEEEeccccceeeeeeeeeeeeechH
Confidence 999999999999999999999999999999999999975 3456667777788999999999999999999999999754
Q ss_pred C
Q 023599 280 H 280 (280)
Q Consensus 280 ~ 280 (280)
|
T Consensus 262 ~ 262 (420)
T KOG0257|consen 262 H 262 (420)
T ss_pred H
Confidence 3
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=312.65 Aligned_cols=249 Identities=17% Similarity=0.148 Sum_probs=196.4
Q ss_pred cCCChHHHHHHHhhcCCCCCeeEeecceee-------cCC-------------CC-----ccchHHHHHHHHHHhccCCC
Q 023599 24 AADIPIYAVMAAFREDPSPMKLNLGFGVYR-------TEE-------------GK-----PLLLNAVRQAEQLLVNDLSA 78 (280)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~-------~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~ 78 (280)
.....+...+.+++ ..+.++|+|++|+|. ++. +. ..+++.+.++.+.+......
T Consensus 21 ~~~~~~~~~a~~~~-~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~~~l~~~~~~ 99 (407)
T PLN02368 21 AVRGELYLRASELQ-KEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSGG 99 (407)
T ss_pred hcCCHHHHHHHHHH-HHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHHHHHhcCCCC
Confidence 33344555555553 356799999999972 110 00 13667777777665422233
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh-cCCCEEEEeCCCCCChHHHHHHc
Q 023599 79 DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH-YYQHTVYLSQPTYGNHPNFFAAA 157 (280)
Q Consensus 79 ~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~-~~Gd~Vli~~P~y~~~~~~~~~~ 157 (280)
..+|++..|.++||+++++|+.+.++..+++++|++ |+|+++++.++ +..++ .+||+|++++|+|..|...++..
T Consensus 100 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~--~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~ 175 (407)
T PLN02368 100 LGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQI--LNAVIRGEKDGVLVPVPQYPLYSATISLL 175 (407)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--cccHHHHHHHH--HHHHcCCCCCEEEEeCCCCccHHHHHHHc
Confidence 567999999999999999999877666678899998 99999999999 77777 69999999999999999999999
Q ss_pred CCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCc
Q 023599 158 GLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGF 234 (280)
Q Consensus 158 G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~ 234 (280)
|++++.+++..+++|++|++.+++.+++. ..+.++++++|||||||.+++.+++++|+++|++|+++||+||+|.++
T Consensus 176 g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l 255 (407)
T PLN02368 176 GGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQN 255 (407)
T ss_pred CCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 99999999843446899999999998641 113457889999999999999999999999999999999999999999
Q ss_pred ccCcCCChhHHHHhh-h------cCCeEEEEecccccc-cccccccceEEE
Q 023599 235 VMNMDADALPVRMFV-A------DGGECLVAQSYSKTM-GLYGERVGALSV 277 (280)
Q Consensus 235 ~~~~~~~~~~~~~~~-~------~~~~~i~~~S~SK~~-~~~G~RvG~~v~ 277 (280)
.|+......++..+. + ...++|+++||||+| ++||||+||+++
T Consensus 256 ~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~ 306 (407)
T PLN02368 256 IYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEM 306 (407)
T ss_pred ccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEE
Confidence 986432333444332 1 134899999999999 899999999985
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=309.32 Aligned_cols=240 Identities=16% Similarity=0.151 Sum_probs=192.7
Q ss_pred hHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccc
Q 023599 28 PIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAI 107 (280)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~ 107 (280)
++.+..+.+..+.++++|+|++|+|......+.++...++..+.+. .....+|.+..|.++||+++++|+.+.++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~ 95 (409)
T PLN00143 18 AVKFLKENFNEDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVR--SAKFNSYAPTGGILPARRAIADYLSNDLPYQL 95 (409)
T ss_pred HHHHHHHhcccCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHh--CcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence 3444445555667789999999997211112344444444444443 23346699999999999999999988766667
Q ss_pred cCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 108 KENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 108 ~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
++++|++ |+|+++++.++ +..++.+||.|++++|+|..|...++..|++++.+++.+++++.+|++.+++++.+++
T Consensus 96 ~~~~I~i--t~G~~~al~~~--~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 171 (409)
T PLN00143 96 SPDDVYL--TLGCKHAAEII--IKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENT 171 (409)
T ss_pred CHhhEEE--ecChHHHHHHH--HHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCC
Confidence 8899998 99999999999 7788899999999999999999999999999999998434567899999999876543
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
+ +++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++.. ...++..+ +...++|+++||||+|++
T Consensus 172 ~---~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~-~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 172 I---AMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK-PFVPMGLF-ASIVPVITLGSISKRWMI 246 (409)
T ss_pred E---EEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC-CCcchhhh-cccCcEEEEccchhhcCC
Confidence 3 788889999999999999999999999999999999999999998632 22333443 334589999999999999
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
||||+||+++.
T Consensus 247 pGlRvG~~v~~ 257 (409)
T PLN00143 247 PGWGLGWLVTC 257 (409)
T ss_pred CccceEEEEee
Confidence 99999999974
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=309.18 Aligned_cols=255 Identities=18% Similarity=0.175 Sum_probs=203.5
Q ss_pred ccccccCCCCccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC
Q 023599 5 NSEKAKESDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP 84 (280)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 84 (280)
.+..+..+.+|.+..++...+...+.++.... ...+.|+|+.|.| +. +.+ +.+.++..+... .. ..+|.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~G~P-~~---~~~-~~~~~~~~~~~~-~~-~~~Y~~ 89 (413)
T PLN00175 20 AAATASTQQPLQVAKRLEKFKTTIFTQMSSLA---IKHGAINLGQGFP-NF---DGP-DFVKEAAIQAIR-DG-KNQYAR 89 (413)
T ss_pred cccccCCCcccchhHHhhcCCCCHHHHHHHHh---hcCCeEecCCCCC-CC---CCC-HHHHHHHHHHHh-cC-CCCcCC
Confidence 44455566777776677766666665544443 2358999999997 32 233 344444444332 22 467999
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeE
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKT 163 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~ 163 (280)
..|.++||+++++++....+..++++ +|++ |+|+++++.++ +.+++.+||+|++++|+|..|...++..|++++.
T Consensus 90 ~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~v--t~G~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~ 165 (413)
T PLN00175 90 GFGVPELNSAIAERFKKDTGLVVDPEKEVTV--TSGCTEAIAAT--ILGLINPGDEVILFAPFYDSYEATLSMAGAKIKT 165 (413)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--eCCHHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEE
Confidence 99999999999999876666556666 6888 99999999999 7788899999999999999999999999999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
+++ +++++.+|++.+++.+.++++ +++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++. ...
T Consensus 166 v~~-~~~~~~~~~~~l~~~~~~~~k---~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~--~~~ 239 (413)
T PLN00175 166 VTL-RPPDFAVPEDELKAAFTSKTR---AILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG--DHI 239 (413)
T ss_pred EEC-CcccCCCCHHHHHHhcCcCce---EEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC--ccc
Confidence 998 455588999999999866543 78889999999999999999999999999999999999999999853 233
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++.++.+..+++|+++||||.|++||||+||++++.
T Consensus 240 s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~ 275 (413)
T PLN00175 240 SMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 275 (413)
T ss_pred ChhhCCCCcCcEEEEecchhhccCcchheeeeEeCH
Confidence 445554445799999999999999999999999763
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=308.01 Aligned_cols=226 Identities=16% Similarity=0.125 Sum_probs=182.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~ 118 (280)
.+.++|+|+.|++ ..+++....+...+.+. .....+|++..|.++||+++++|+...++..++++ +|++ |+
T Consensus 28 ~~~~~i~l~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~ 99 (388)
T PRK07366 28 AGKELIDLSLGSS----DLPAPAHALEAIAQSLH--DPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLP--LI 99 (388)
T ss_pred cCCCeEEeCCCCC----CCCCCHHHHHHHHHHHh--CcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEE--CC
Confidence 4567999999995 33334444444333333 22356799999999999999999977766667777 6888 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++..+.++.+|++.+++.+.+++ .+++++||
T Consensus 100 Gs~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~---k~i~l~~p 174 (388)
T PRK07366 100 GSQEGTAHL--PLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQA---RLMVLSYP 174 (388)
T ss_pred CcHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccc---eEEEEeCC
Confidence 999999999 7778899999999999999999999999999999999323357789999988775443 37888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|++|+++||+||+|.++.++.....+++.++.....++|+++||||+||+||+|+||++..
T Consensus 175 ~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~ 254 (388)
T PRK07366 175 HNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGN 254 (388)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCC
Confidence 99999999999999999999999999999999999998532213344444333457999999999999999999999864
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=311.06 Aligned_cols=229 Identities=14% Similarity=0.154 Sum_probs=187.6
Q ss_pred CCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 39 DPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 39 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
....++|+|+.|+|.-.+.+..+.++.+...+.+. .+...+|.+..|.++||+++|+|+....+..+++++|++ |+
T Consensus 63 ~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~i--t~ 138 (462)
T PLN02187 63 DVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLR--SGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFL--TA 138 (462)
T ss_pred CCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHh--CCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEE--eC
Confidence 34578999999987222222334445555444444 233567999999999999999999776666678899998 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+++..++++++|++.+++++.++++ +++++||
T Consensus 139 G~~~al~~~--~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~---~v~i~nP 213 (462)
T PLN02187 139 GCNQGIEIV--FESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTV---AMVVINP 213 (462)
T ss_pred CHHHHHHHH--HHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcE---EEEEeCC
Confidence 999999999 77788999999999999999999999999999999984345689999999998865443 8888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|++|+++||+||+|.++.|+.. ...++..+.. ..++|+++||||+|++||||+||+++.
T Consensus 214 ~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~-~~~s~~~~~~-~~~vi~l~SfSK~f~~pGlRiG~~v~~ 291 (462)
T PLN02187 214 NNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN-PFVSMGKFAS-IVPVLTLAGISKGWVVPGWKIGWIALN 291 (462)
T ss_pred CCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CceeHHHhcc-CCcEEEEecchhhcCCccceeEEEEec
Confidence 99999999999999999999999999999999999998532 3334444432 247999999999999999999999974
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=314.30 Aligned_cols=247 Identities=17% Similarity=0.131 Sum_probs=197.3
Q ss_pred ccccccccCCChHH---HHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHH
Q 023599 17 AFEQVARAADIPIY---AVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNK 93 (280)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~ 93 (280)
..+++.......+. ..+.+. +..+.++|+|+.|+| +..+++.+...++++.+.+. . ..+|++..|.++||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~--~--~~~Y~~~~G~~~lRe 192 (517)
T PRK13355 119 KSHKLDNVLYDVRGPVVDEANRM-EAAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLT--D--TEGYSDSKGLFSARK 192 (517)
T ss_pred hhHHhhccCccHHHHHHHHHHHH-HHcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhh--c--CCCCCCCcChHHHHH
Confidence 34444444444332 333344 235678999999997 33344456677777666554 2 357999999999999
Q ss_pred HHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCC
Q 023599 94 LSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNG 173 (280)
Q Consensus 94 ~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 173 (280)
+|++++..++...+++++|++ |+|+++++.++ +.+++.+||+|++++|+|..|...++..|++++.+++..+.+|.
T Consensus 193 aia~~~~~~~~~~~~~~~I~i--t~G~~eal~~~--~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~ 268 (517)
T PRK13355 193 AIMQYAQLKGLPNVDVDDIYT--GNGVSELINLS--MSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWY 268 (517)
T ss_pred HHHHHHHhcCCCCCChhHEEE--eCcHHHHHHHH--HHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCC
Confidence 999998766655577899998 99999999999 77788999999999999999999999999999999983334588
Q ss_pred cCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 174 LDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 174 ~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
+|++.+++++.++++ +++++|||||||.+++.+++++|+++|++|+++||+||+|.+|.|+. ..+.++.++. ...
T Consensus 269 ~d~~~l~~~~~~~~k---~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~-~~~~s~~~~~-~~~ 343 (517)
T PRK13355 269 PDIDDIRSKITSRTK---AIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDG-LEHTSIASLA-PDL 343 (517)
T ss_pred CCHHHHHHhcCcCce---EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCC-CCcccHHHhC-CCC
Confidence 999999998876554 88889999999999999999999999999999999999999999863 2344444442 233
Q ss_pred eEEEEecccccccccccccceEEEE
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+++++||||+|++||||+||++++
T Consensus 344 ~vi~~~S~SK~~~~~G~RiG~~i~~ 368 (517)
T PRK13355 344 FCVTFSGLSKSHMIAGYRIGWMILS 368 (517)
T ss_pred eEEEEecchhhccCcccceEEEEee
Confidence 6888999999999999999999975
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=286.81 Aligned_cols=262 Identities=54% Similarity=0.941 Sum_probs=246.2
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSA 96 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia 96 (280)
+|++++..++++|+.+.+.++.++++++|||++|.+.|+.+.++...+++++.+.+..++ ....|.|..|.+.++++++
T Consensus 1 ~F~~i~~~p~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~-~~k~Yl~i~G~~~f~~~~~ 79 (396)
T COG1448 1 MFEKIEAAPADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE-KTKNYLPIEGLPEFLEAVQ 79 (396)
T ss_pred CccccccCCCCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccc-cccccCCcCCcHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999988544 5788999999999999999
Q ss_pred HHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH
Q 023599 97 KLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 97 ~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 176 (280)
+.+++.+...+..+++..++|.|||+|+.++++++....+..+|.+++|+|++|..++...|.++.++|++|.++.++|+
T Consensus 80 ~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df 159 (396)
T COG1448 80 KLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDF 159 (396)
T ss_pred HHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccH
Confidence 99999988878889999999999999999999999988888899999999999999999999999999999888889999
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+.+.+...+++.+++++..+|||||.-++.++|++|+++.++.+++.+.|-+|+.|..+.+++...++.+......++
T Consensus 160 ~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~l 239 (396)
T COG1448 160 DGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELL 239 (396)
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEE
Confidence 99999999888888999999999999999999999999999999999999999999999877778999999988777899
Q ss_pred EEecccccccccccccceEEEEc
Q 023599 257 VAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+..||||+||+.|.|+|.+.+++
T Consensus 240 va~S~SKnfgLYgERVGa~~vva 262 (396)
T COG1448 240 VASSFSKNFGLYGERVGALSVVA 262 (396)
T ss_pred EEehhhhhhhhhhhccceeEEEe
Confidence 99999999999999999988764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=305.42 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=188.4
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.++|+|+.|+|...+..+++.+..+...+.+. ......|.+..|.++||+++++++...++..+++++|++ |+|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~i--t~G~ 126 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALR--SGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYL--TAGC 126 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHH--cCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEE--eCCH
Confidence 568999999997333334455555555554444 233457999999999999999999877777778899998 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+++++++ +..+..+||+|++++|+|..|...+...|++++.+++..++++.+|++.+++.+.++++ +++++||||
T Consensus 127 ~~al~l~--~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~---~i~i~~P~N 201 (430)
T PLN00145 127 AQAIEII--MSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTV---AMVIINPNN 201 (430)
T ss_pred HHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCce---EEEEeCCCC
Confidence 9999999 77778899999999999999999999999999999974444688999999998876544 888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|++++++||+||+|.+|.|+. ....++..+. ...++|+++||||.|++||||+||+++.
T Consensus 202 PtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~-~~~~~~~~~~-~~~~vi~~~S~SK~~~~pG~RlG~iv~~ 277 (430)
T PLN00145 202 PCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGS-KPFVPMGVFG-EVAPVLTLGSISKRWVVPGWRLGWIATC 277 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCC-CCccchhhhc-ccCcEEEEeccccccCCCCeeEEEEEEe
Confidence 99999999999999999999999999999999999863 2333444442 3468999999999999999999999974
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=307.68 Aligned_cols=234 Identities=19% Similarity=0.146 Sum_probs=186.1
Q ss_pred CCCCeeEeecceeec---------------CCCC----------ccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHH
Q 023599 40 PSPMKLNLGFGVYRT---------------EEGK----------PLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~---------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ 94 (280)
++.++|+|++|+|.+ +..+ .+|...++++.+.+.........|++..|.++||++
T Consensus 44 ~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~a 123 (481)
T PTZ00377 44 PFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKA 123 (481)
T ss_pred CcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHH
Confidence 347999999999832 2211 124566666554333212234679999999999999
Q ss_pred HHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh-cCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCC
Q 023599 95 SAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH-YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNG 173 (280)
Q Consensus 95 ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~-~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 173 (280)
+++++...++..+++++|++ |+|+++++.++ +..++ .+||+|++++|+|..|...++..|++++.+++..+++|.
T Consensus 124 ia~~~~~~~g~~~~~~~I~i--t~Ga~~al~~~--~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~ 199 (481)
T PTZ00377 124 VAAFIERRDGVPKDPSDIFL--TDGASSGIKLL--LQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWS 199 (481)
T ss_pred HHHHHHHhcCCCCChhhEEE--cCCHHHHHHHH--HHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCC
Confidence 99999877777778899998 99999999999 77777 699999999999999999999999999999983334688
Q ss_pred cCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-
Q 023599 174 LDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV- 249 (280)
Q Consensus 174 ~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~- 249 (280)
+|++.+++++.+. ..+.++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|+......++..+.
T Consensus 200 ~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~ 279 (481)
T PTZ00377 200 LDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLL 279 (481)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHH
Confidence 9999999998641 113347777899999999999999999999999999999999999999985322333433321
Q ss_pred h---c---CCeEEEEeccccc-ccccccccceEEE
Q 023599 250 A---D---GGECLVAQSYSKT-MGLYGERVGALSV 277 (280)
Q Consensus 250 ~---~---~~~~i~~~S~SK~-~~~~G~RvG~~v~ 277 (280)
+ . ..++|+++||||+ +++||||+||+++
T Consensus 280 ~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~ 314 (481)
T PTZ00377 280 ELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFEL 314 (481)
T ss_pred hhcccccCCeEEEEEecCCcccccCCcCceEEEEE
Confidence 1 1 1379999999997 6999999999987
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=301.66 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=184.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~ 118 (280)
.+.+.++|+.|.| + .+.+...++++.+.+. .....+|.+..|.++||+++|+|+...++..++++ +|++ |+
T Consensus 31 ~~~~~~~l~~g~p-~---~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~i--t~ 102 (403)
T PRK08636 31 AGEDIIDFSMGNP-D---GPTPQHIIDKLCESAQ--KPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVA--TM 102 (403)
T ss_pred cCCCEEEcCCcCC-C---CCCCHHHHHHHHHHhc--CCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--CC
Confidence 3467899999986 2 2245556666665554 22357899999999999999999977656556777 7988 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHH----HHHHhcCCCCcEEEE
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGM----LQDLGAAPSGAIVLL 194 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l----~~~~~~~~~~~~~v~ 194 (280)
|+++++.++ +..++.+||.|++++|+|+.+...++..|++++.+++..++++++|++.+ ++++.+...+..+++
T Consensus 103 G~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~ 180 (403)
T PRK08636 103 GSKEGYVHL--VQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVV 180 (403)
T ss_pred ChHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEE
Confidence 999999999 78889999999999999999999999999999999982134578998755 555544333456889
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccce
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGA 274 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~ 274 (280)
++|||||||.+++.+++++|+++|++|+++||+||+|.++.++. ...+++.++....+++|+++||||+||+||+|+||
T Consensus 181 ~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~ 259 (403)
T PRK08636 181 VNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG-YKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGF 259 (403)
T ss_pred EeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCC-CCCCChhcCCCccccEEEEEecccccCCccceeee
Confidence 99999999999999999999999999999999999999999863 23344555533345789999999999999999999
Q ss_pred EEEE
Q 023599 275 LSVV 278 (280)
Q Consensus 275 ~v~~ 278 (280)
++.+
T Consensus 260 iv~~ 263 (403)
T PRK08636 260 VVGN 263 (403)
T ss_pred eeCC
Confidence 9864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=298.61 Aligned_cols=241 Identities=14% Similarity=0.134 Sum_probs=192.2
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIF 100 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~ 100 (280)
+.......+...+...+ ..++.++|+.|++ ..+++...++++.+... . ...+|.+..|.++||+++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~p----~~~~~~~~~~~~~~~~~--~-~~~~Y~~~~G~~~lr~~ia~~~~ 80 (384)
T PRK06348 10 YQQMEVNIMAEIATLAK--KFPDIIDLSLGDP----DLITDESIINAAFEDAK--K-GHTRYTDSGGDVELIEEIIKYYS 80 (384)
T ss_pred HhcCCccHHHHHHHHHH--hcCCcEEcCCCCC----CCCCCHHHHHHHHHHHh--c-CCCCCCCCCCcHHHHHHHHHHHH
Confidence 33333344444444432 2357899999985 23344455555544443 2 24679999999999999999997
Q ss_pred CCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHH
Q 023599 101 GADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 101 ~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 180 (280)
+.++..+++++|++ |+|+++++.++ +.+++.+||+|++++|+|..|...++..|++++.+++.+++++.+|++.++
T Consensus 81 ~~~~~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 156 (384)
T PRK06348 81 KNYDLSFKRNEIMA--TVGACHGMYLA--LQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLE 156 (384)
T ss_pred HHhCCCCChhhEEE--cCChHHHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHH
Confidence 76666677899998 99999999999 778889999999999999999999999999999998743456789999999
Q ss_pred HHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEec
Q 023599 181 QDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQS 260 (280)
Q Consensus 181 ~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 260 (280)
+.++++++ ++++++||||||.+++.+++++|+++|++++++||+||+|.++.++. ...++.++....+++|+++|
T Consensus 157 ~~~~~~~~---~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~S 231 (384)
T PRK06348 157 ALITSKTK---AIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE--DFVPMATLAGMPERTITFGS 231 (384)
T ss_pred HhhCcCcc---EEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC--CccchhhcCCCcCcEEEEec
Confidence 98865443 67778999999999999999999999999999999999999999863 22344444333569999999
Q ss_pred ccccccccccccceEEEEc
Q 023599 261 YSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 261 ~SK~~~~~G~RvG~~v~~~ 279 (280)
|||+|++||+|+||++++.
T Consensus 232 fSK~~~l~GlRiG~~v~~~ 250 (384)
T PRK06348 232 FSKDFAMTGWRIGYVIAPD 250 (384)
T ss_pred chhccCCccccceeeecCH
Confidence 9999999999999999753
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=299.66 Aligned_cols=247 Identities=13% Similarity=0.122 Sum_probs=189.8
Q ss_pred ccccccccCCChHHHHHHHhh--cCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFR--EDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ 94 (280)
+.+++....+..+.+...... ...+.+.++|+.|++ + .+ +.+.+.++...... .....+|. ..|.++||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p-~---~~-~~~~~~~~~~~~~~-~~~~~~y~-~~G~~~lr~a 77 (399)
T PRK07681 5 LATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNP-D---MP-PADFVREEMVHTAN-QKESYGYT-LSGIQEFHEA 77 (399)
T ss_pred HhHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCC-C---CC-CCHHHHHHHHHHHh-ccccCCCC-CCCcHHHHHH
Confidence 334444444444444333321 223568899999985 2 22 33445554444431 12233454 4799999999
Q ss_pred HHHHHhCCCCccccC-CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCC
Q 023599 95 SAKLIFGADSPAIKE-NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNG 173 (280)
Q Consensus 95 ia~~l~~~~~~~~~~-~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 173 (280)
+++|+...++..+++ ++|++ |+|+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+++.+++++.
T Consensus 78 ia~~~~~~~g~~~~~~~~I~i--t~G~~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 153 (399)
T PRK07681 78 VTEYYNNTHNVILNADKEVLL--LMGSQDGLVHL--PMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFL 153 (399)
T ss_pred HHHHHHHHhCCCCCCCCeEEE--CCCcHHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCc
Confidence 999998776666777 78988 99999999999 77788999999999999999999999999999999983233577
Q ss_pred cCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 174 LDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 174 ~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
+|++.+++++.+++ ++++++|||||||.+++.+++++|+++|++++++||+||+|.++.++. ....++.++....+
T Consensus 154 ~d~~~l~~~~~~~~---k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~~~~ 229 (399)
T PRK07681 154 PDLELIPEEIADKA---KMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDG-NKPISFLSVPGAKE 229 (399)
T ss_pred CCHHHHHHhccccc---eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCC-CCCCChhhCCCCcc
Confidence 89999998886543 388889999999999999999999999999999999999999999863 23334444433346
Q ss_pred eEEEEecccccccccccccceEEEE
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++|+++||||+||+||+|+||++++
T Consensus 230 ~~i~~~S~SK~~~~~GlRiG~~i~~ 254 (399)
T PRK07681 230 VGVEINSLSKSYSLAGSRIGYMIGN 254 (399)
T ss_pred cEEEEeecccccCCccceeEEEecC
Confidence 8999999999999999999999864
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=298.71 Aligned_cols=225 Identities=17% Similarity=0.115 Sum_probs=180.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc-ccCC-CeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA-IKEN-RVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~-~~~~-~i~~v~t 117 (280)
.+.++|+|+.|++ +. ++ ++.+.++..+.. . ...+|++..|.++||+++++|+...++.. ++++ +|++ |
T Consensus 27 ~~~~~i~l~~~~p-~~---~~-~~~~~~~~~~~~--~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~i--t 96 (396)
T PRK09147 27 ADLPPISLSIGEP-KH---PT-PAFIKDALAANL--D-GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLP--V 96 (396)
T ss_pred cCCCeEecCCCCC-CC---CC-CHHHHHHHHHHh--h-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEE--C
Confidence 4678999999996 22 22 344444444433 1 24679999999999999999987665555 6664 8888 9
Q ss_pred ccchhHHHHHHHHHHhhcC---CCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEE
Q 023599 118 LSGSGSLRIGADFLAKHYY---QHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~---Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~ 194 (280)
+|+++++.++ +..++.+ ||.|++++|+|..|...++..|++++.+|+..++++.+|++.+++.+.++++ +++
T Consensus 97 ~G~~~al~~~--~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k---~i~ 171 (396)
T PRK09147 97 NGSREALFAF--AQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQ---LLF 171 (396)
T ss_pred CChHHHHHHH--HHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccE---EEE
Confidence 9999999999 7788889 8999999999999999999999999999993334578999999988765443 778
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH-HHHhh----hcCCeEEEEecccccccccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP-VRMFV----ADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~----~~~~~~i~~~S~SK~~~~~G 269 (280)
++|||||||.+++.+++++|+++|++|+++||+||+|.++.++......+ +.... +..+|+|+++||||.|++||
T Consensus 172 l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G 251 (396)
T PRK09147 172 VCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG 251 (396)
T ss_pred EcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc
Confidence 89999999999999999999999999999999999999998863212211 22111 12369999999999999999
Q ss_pred cccceEEEEc
Q 023599 270 ERVGALSVVR 279 (280)
Q Consensus 270 ~RvG~~v~~~ 279 (280)
+|+||++.+.
T Consensus 252 lRiG~~~~~~ 261 (396)
T PRK09147 252 LRSGFVAGDA 261 (396)
T ss_pred ceeeeecCCH
Confidence 9999998753
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=297.66 Aligned_cols=240 Identities=16% Similarity=0.130 Sum_probs=190.7
Q ss_pred ChHHHHHHHh-hcCCCCCeeEeecceeecC-CCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q 023599 27 IPIYAVMAAF-REDPSPMKLNLGFGVYRTE-EGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADS 104 (280)
Q Consensus 27 ~~~~~~~~~~-~~~~~~~~i~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~ 104 (280)
+.+..+++.+ ....+.++|+|++|+| +. ...+++....++..+.+. .....+|.+..|.++||+++++++....+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g 91 (409)
T PLN02656 15 GILSLLMESIDDEENGKRVISLGMGDP-TAYSCFHTTHVAQEAVVDALQ--SNKFNGYAPTVGLPQARRAIAEYLSRDLP 91 (409)
T ss_pred hHHHHHHHhccccccCCeeeecCCCCC-CcCCCCCCCHHHHHHHHHHHh--cCCCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 3344455444 3345678999999997 21 112234444444333344 33356799999999999999999987666
Q ss_pred ccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHh
Q 023599 105 PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 105 ~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
..+++++|++ |+|+++++.++ +..++.+||+|++++|+|+.|....+..|++++.+++..++++.+|++.+++++.
T Consensus 92 ~~~~~~~i~~--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 92 YKLSLDDVFI--TSGCTQAIDVA--LSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCCCcccEEE--eCChHHHHHHH--HHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 6677899998 99999999999 7777899999999999999999888889999999998333467899999999886
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
++++ ++++++||||||.+++.+++++|+++|++++++||+||+|.+|.++.. ...++.++ +...++|+++||||+
T Consensus 168 ~~~~---~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-~~~~~vi~~~SfSK~ 242 (409)
T PLN02656 168 QNTV---ALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN-PFVPMGVF-GSIVPVLTLGSLSKR 242 (409)
T ss_pred cCce---EEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC-CcccHHHh-cccCcEEEEcccchh
Confidence 5543 788889999999999999999999999999999999999999998632 33344444 344689999999999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
|++||||+||++++
T Consensus 243 f~~pGlRiG~~i~~ 256 (409)
T PLN02656 243 WIVPGWRLGWFVTT 256 (409)
T ss_pred ccCcceeEEEEEEe
Confidence 99999999999984
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=299.52 Aligned_cols=224 Identities=18% Similarity=0.169 Sum_probs=183.6
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccC-CCeEEeecccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKE-NRVSTVQCLSG 120 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~-~~i~~v~t~g~ 120 (280)
.+.|+|+.|.+ +..++++...++..+.+. .....+|++..|.++||+++++++.+..+..+.+ ++|++ |+|+
T Consensus 39 ~~~i~l~~g~~---~~~~p~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~i--t~Ga 111 (405)
T PRK06207 39 GRPVDFSHGDV---DAHEPTPGAFELFSAGVE--RGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELII--TPGT 111 (405)
T ss_pred CCceecCCcCC---CCCCCCHHHHHHHHHHHh--cCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEE--eCCc
Confidence 57899999997 222334445555555444 2234679999999999999999987765555667 89998 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeec---CCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYD---PKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~---~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
++++.++ +..++.+||+|++++|+|+.+...++..|++++.+++.. ++++++|++.+++++.++++ +++++|
T Consensus 112 ~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k---~v~l~~ 186 (405)
T PRK06207 112 QGALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVR---VFLFSN 186 (405)
T ss_pred HHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCe---EEEECC
Confidence 9999999 777889999999999999999999999999999999731 23578999999998876544 888899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
||||||.+++.+++++|+++|++|+++||+||+|.++.++.. ...++.++....+++|+++||||+|++||+|+||+++
T Consensus 187 P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~ 265 (405)
T PRK06207 187 PNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGT-SYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFG 265 (405)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCCchhcCCCCcCcEEEEecchhhccCcccceEEEEc
Confidence 999999999999999999999999999999999999998632 2333333322356999999999999999999999986
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
+
T Consensus 266 ~ 266 (405)
T PRK06207 266 S 266 (405)
T ss_pred C
Confidence 5
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=303.52 Aligned_cols=229 Identities=19% Similarity=0.138 Sum_probs=188.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCC-CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS-ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
..+++|+|+.|.+ .+|.+.++++.+.+....+ ...+|++..|.++||+++++|+.++++..+++++|++ |+
T Consensus 127 ~~p~~i~~~~~~~------~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~i--T~ 198 (534)
T PLN02231 127 DHPSLLDKSETHG------LFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFL--TD 198 (534)
T ss_pred cCCccCCCCCccc------cCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEE--eC
Confidence 3468899886542 3566888888876653222 3577999999999999999999888777788999998 99
Q ss_pred cchhHHHHHHHHHHhhc-CCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC---CCcEEEE
Q 023599 119 SGSGSLRIGADFLAKHY-YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP---SGAIVLL 194 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~-~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~---~~~~~v~ 194 (280)
|+++++.++ +..++. +||.|+++.|+|+.|...++..|++++.+++..+++|++|++.|++++.+.. .+.++++
T Consensus 199 Ga~~ai~~~--~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv 276 (534)
T PLN02231 199 GASPAVHMM--MQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV 276 (534)
T ss_pred CHHHHHHHH--HHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 999999999 666674 7999999999999999999999999999998323458999999999986521 1345778
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh------cCCeEEEEecccccc-cc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA------DGGECLVAQSYSKTM-GL 267 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~------~~~~~i~~~S~SK~~-~~ 267 (280)
++|||||||.+++.+++++|+++|++++++||+||+|.++.|+......++..+.. ...++|+++||||.| ++
T Consensus 277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~ 356 (534)
T PLN02231 277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGE 356 (534)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccC
Confidence 88999999999999999999999999999999999999999953334445554432 123799999999976 89
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
||||+||+++.
T Consensus 357 pGlRiGy~~~~ 367 (534)
T PLN02231 357 CGKRGGYMEVT 367 (534)
T ss_pred CccceEEEEEe
Confidence 99999999874
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=295.15 Aligned_cols=225 Identities=16% Similarity=0.119 Sum_probs=179.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~ 118 (280)
.++++++|+.|++ ..+.+ +.+.++..+... .....+|.+..|.++||+++++|+....+..++++ +|++ |+
T Consensus 29 ~~~~~i~l~~~~~----~~~~~-~~~~~~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~--t~ 100 (385)
T PRK09276 29 RGVDVISLGIGDP----DLPTP-DHIIEAMCKAVE-DPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVIS--LI 100 (385)
T ss_pred cCCCEEEecCCCC----CCCCC-HHHHHHHHHHHh-CCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--cc
Confidence 4567899999985 22233 344444444331 22346799999999999999999876545445556 4776 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++.+++++.+|++.+++.+.++++ +++++||
T Consensus 101 G~~~~i~~~--~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~---~v~l~~p 175 (385)
T PRK09276 101 GSKEGIAHI--PLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAK---LMFINYP 175 (385)
T ss_pred CcHHHHHHH--HHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccce---EEEEeCC
Confidence 999999999 77778999999999999999999999999999999983334577899999888765443 8888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|++|+++||+||+|.++.++. ....++..+....+++|+++||||.||+||+|+||++++
T Consensus 176 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~ 254 (385)
T PRK09276 176 NNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDG-YKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGN 254 (385)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCC-CCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCC
Confidence 9999999999999999999999999999999999998852 223344444333468999999999999999999999865
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=297.96 Aligned_cols=228 Identities=18% Similarity=0.168 Sum_probs=180.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+.++++|++|+| +.... .+++.+.++..+... ....++|.+..|.++||+++++|+...++..+++++|++ |+|
T Consensus 30 ~g~~~~~~~~G~p-~~~~~-~~p~~~~~a~~~~~~-~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~i--t~G 104 (433)
T PRK06855 30 LGVKITWENIGDP-IAKGE-KIPDWMKEIVAELVM-DDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIF--FNG 104 (433)
T ss_pred ccccccccccCCC-cccCC-CCCHHHHHHHHHHhh-cCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEE--cCc
Confidence 3457899999996 22122 344444444444432 233578999999999999999999887777788899998 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH-HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF-AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~-~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
+++++.++ + .++.+||.|++++|+|+.|.... ...|++++.+++..++++.+|++.|++++...+ +.++++++||
T Consensus 105 ~~~al~~~--~-~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~i~l~~P 180 (433)
T PRK06855 105 LGDAIAKI--Y-GLLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNP-SIAGILLINP 180 (433)
T ss_pred HHHHHHHH--H-HhcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCC-CceEEEEECC
Confidence 99999988 5 36789999999999999987543 356889999998323457899999999986432 2347777899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|++||++||+||+|.++.|+. ...+++.++.+ ..++|+++||||+|++||||+||++++
T Consensus 181 ~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~-~~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~ii~p 258 (433)
T PRK06855 181 DNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG-KKTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWIEVY 258 (433)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCCCHHHHcC-cCCeEEEecCccccCCCcceEEEEEEe
Confidence 9999999999999999999999999999999999999853 23445555532 236899999999999999999999973
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=295.31 Aligned_cols=224 Identities=17% Similarity=0.153 Sum_probs=179.5
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeeccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLS 119 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g 119 (280)
+++.|+|+.|.| + .+.++ .+.++..+... .....+|.+..|.++||+++++|+....+..++++ +|++ |+|
T Consensus 31 ~~~~i~l~~~~p-~---~~~~~-~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~i--t~G 102 (389)
T PRK08068 31 GHDVINLGQGNP-D---QPTPE-HIVEALQEAAE-NPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAI--LFG 102 (389)
T ss_pred CCCeEEecCCCC-C---CCCCH-HHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cCC
Confidence 457899999986 2 22333 34444443331 23346798899999999999999875555556667 7888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++.++.++.+|++.+++.+.+++ .+++++|||
T Consensus 103 ~~~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~---~~v~l~~P~ 177 (389)
T PRK08068 103 GKAGLVEL--PQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKA---KLMYLNYPN 177 (389)
T ss_pred cHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccc---eEEEEECCC
Confidence 99999998 7788899999999999999999999999999999998323367789999999886543 388889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|+++|++++++||+||+|.++.++.. ...+.....+..+++++++||||+||+||+|+||++..
T Consensus 178 NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~-~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 255 (389)
T PRK08068 178 NPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ-KPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGN 255 (389)
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC-CCcChhhCCCccCCEEEEecchhccCCccceeEeEecC
Confidence 9999999999999999999999999999999999988532 22222233333458999999999999999999999864
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=296.03 Aligned_cols=225 Identities=16% Similarity=0.150 Sum_probs=183.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCC-eEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENR-VSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~-i~~v~t~ 118 (280)
.+.++++|+.|.| . .+.+...++++.+.+. .....+|++..|.++||+++++|+....+..+++++ |++ |+
T Consensus 33 ~g~~~i~l~~g~p---~-~~~p~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~v--t~ 104 (394)
T PRK05942 33 QGLDLIDLGMGNP---D-GAAPQPVIEAAIAALA--DPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALP--LL 104 (394)
T ss_pred cCCCeEEcCCCCC---C-CCCCHHHHHHHHHHHh--CCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEE--cc
Confidence 4567999999986 2 2345556666666554 233467999999999999999998765455556664 777 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +..++.+||+|++++|+|+.+...+...|++++.+++..++++.+|++.+++.+.++++ +++++||
T Consensus 105 G~~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k---~i~l~~P 179 (394)
T PRK05942 105 GSKEGLTHL--ALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK---ILYFNYP 179 (394)
T ss_pred ChHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccce---EEEEcCC
Confidence 999999999 77778999999999999999999889999999999983234578999999998865443 8888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|++++++||+||+|.++.++.. ...++.++.+..+++|+++||||.||+||+|+||++..
T Consensus 180 ~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~ 258 (394)
T PRK05942 180 SNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY-QPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN 258 (394)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC-CCCChhhCCCccccEEEEecchhccCChhhheeeeecC
Confidence 99999999999999999999999999999999999998532 23344444333457899999999999999999999864
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=292.22 Aligned_cols=225 Identities=15% Similarity=0.103 Sum_probs=180.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~ 118 (280)
.++++++|+.|++ ..+.+....+...+.+. .....+|++..|.++||+++++|+...++...+++ +|++ |+
T Consensus 27 ~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~--t~ 98 (383)
T TIGR03540 27 EGVDVISLGIGDP----DLPTPKHIVEALCKAAE--NPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLS--LI 98 (383)
T ss_pred cCCCeEEeCCCCC----CCCCCHHHHHHHHHHHh--CCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEE--CC
Confidence 4578999999985 22333333333333333 22356799999999999999999876555545555 5777 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +..++.+||+|++++|+|+.|...++..|++++.+++.++.++.+|++.+++.+.+++ .+++++||
T Consensus 99 G~~~~l~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~---~~v~i~~P 173 (383)
T TIGR03540 99 GSKEGIAHI--PLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKA---KLMFINYP 173 (383)
T ss_pred CcHHHHHHH--HHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccc---eEEEEeCC
Confidence 999999999 7777899999999999999999999999999999998333357789999999886544 38888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|++|+++||+||+|.++.++. ....++.++....+++|+++||||+||+||+|+||+++.
T Consensus 174 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~-~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~ 252 (383)
T TIGR03540 174 NNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDG-YKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGN 252 (383)
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCC-CCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCC
Confidence 9999999999999999999999999999999999998853 223333443223458899999999999999999999865
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=293.00 Aligned_cols=224 Identities=15% Similarity=0.140 Sum_probs=178.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc-ccCC-CeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA-IKEN-RVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~-~~~~-~i~~v~t 117 (280)
++.++|+|+.|++ + ...++...+...+.+. ......|+ ..|.++||+++++|+....+.. ++++ +|++ |
T Consensus 42 ~~~~~i~L~~g~p-~---~~~~~~~~~~l~~~~~--~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~i--t 112 (410)
T PRK06290 42 PDMELIDMGVGEP-D---EMADESVVEVLCEEAK--KPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIH--S 112 (410)
T ss_pred CCCCeEEcCCCCC-C---CCCCHHHHHHHHHHHh--CCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEE--c
Confidence 3457899999995 2 2233333333333332 22234565 4899999999999987665554 6665 7988 9
Q ss_pred ccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 118 LSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
+|+++++.++ +..++.+||+|+++.|+|..|...++..|++++.+++..+.++.+|++.+++.+.+++ .+++++|
T Consensus 113 ~Gs~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~---k~i~l~n 187 (410)
T PRK06290 113 IGSKPALAML--PSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKA---KLLYLNY 187 (410)
T ss_pred cCHHHHHHHH--HHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccc---eEEEEEC
Confidence 9999999999 7777899999999999999999999999999999999323357789999999886544 3888889
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
||||||.+++.+++++|+++|++|+++||+||+|.++.++. ...++.++.+..+++|+++||||.||+||+|+||+++
T Consensus 188 P~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~--~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~ 265 (410)
T PRK06290 188 PNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG--KPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVG 265 (410)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC--CCcChhcCCCccccEEEEeechhhcCCchhheEeEEe
Confidence 99999999999999999999999999999999999998853 2223344433446789999999999999999999997
Q ss_pred Ec
Q 023599 278 VR 279 (280)
Q Consensus 278 ~~ 279 (280)
+.
T Consensus 266 ~~ 267 (410)
T PRK06290 266 NE 267 (410)
T ss_pred CH
Confidence 53
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=274.12 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=201.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
..+|.|+.|+|...+-+.....+.++..+.+. .+...+|.|..|.+..|+++|+|+++.-...+++++|++ |.|.+
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~--Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~l--tsGC~ 136 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALR--SGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVL--TSGCS 136 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHh--cCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEE--eccch
Confidence 47899999999777666667777777777776 455678999999999999999998888777788999999 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+|++++ +.++-+||..|++|.|+|+-|...+...|++++++++..+.+|.+|++.+++.+.++|. +++++||+||
T Consensus 137 qAIe~~--i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~---AivviNP~NP 211 (447)
T KOG0259|consen 137 QAIELA--ISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTV---AIVVINPNNP 211 (447)
T ss_pred HHHHHH--HHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCee---EEEEeCCCCC
Confidence 999999 77777999999999999999999999999999999997777899999999999998876 8888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+|.+++.+.+++|++.|+|++++||.||+|.+++|+ +.++.++..+. ...-+|+++|+||-|=.||||+||+++-+
T Consensus 212 cGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg-~~pfvpmg~fs-siVPVitlggisKrW~VPGWRlGWi~~hD 287 (447)
T KOG0259|consen 212 CGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFG-DKPFVPMGKFS-SIVPVITLGGISKRWIVPGWRLGWIALHD 287 (447)
T ss_pred CcccccHHHHHHHHHHHHHhCCeEEehhhcceeecC-CCCccchhhcc-ccCceEeecccccccccCCceeeeEEEec
Confidence 999999999999999999999999999999999997 34565665553 23469999999999999999999998754
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=292.10 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=175.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~ 118 (280)
.+.+.|+|+.|+| ..+.+...+++..+.+. .....+|.+..|.++||+++++++....+..++++ +|++ |+
T Consensus 28 ~~~~~i~l~~~~p----~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i--t~ 99 (405)
T PRK09148 28 AGADIIDLGMGNP----DLPTPQHIVDKLCETAQ--DPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVA--TL 99 (405)
T ss_pred cCCCeEEcCCCCC----CCCCCHHHHHHHHHHHc--CcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cC
Confidence 4567899999985 23344445555433332 23357799999999999999999865544445666 8988 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++ +.++ .+.+.+++.+.....+..+++++||
T Consensus 100 G~~~al~~~--~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~-~~~~--~~~~~l~~~~~~~~~~~~~v~l~~P 174 (405)
T PRK09148 100 GSKEGFANM--AQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPA-EPDE--EFFPALERAVRHSIPKPIALIVNYP 174 (405)
T ss_pred ChHHHHHHH--HHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeC-CCCC--CCccCHHHHHhhccccceEEEEeCC
Confidence 999999999 7777899999999999999999999999999999998 3332 1234455555432233458889999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|++|+++||+||+|.++.++. ....++..+....+++|+++||||.||+||+|+||++++
T Consensus 175 ~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~-~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~ 253 (405)
T PRK09148 175 SNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDG-NPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGN 253 (405)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCC-CCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCC
Confidence 9999999999999999999999999999999999998853 223334444323457899999999999999999999875
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=290.79 Aligned_cols=239 Identities=18% Similarity=0.201 Sum_probs=188.5
Q ss_pred hHHHHHHHhhcC--CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCc
Q 023599 28 PIYAVMAAFRED--PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSP 105 (280)
Q Consensus 28 ~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~ 105 (280)
++....+.++.. .+.++++|+.|+|.+++.. .+.+.+.++..+... .....+|.+..|.++||+++++++...+ .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~-~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~aia~~~~~~~-~ 91 (401)
T TIGR01264 15 PIRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNL-PTDPEVMQAMKDSLD-SGKYNGYAPTVGALSAREAIASYYHNPD-G 91 (401)
T ss_pred HHHHHHHHHHhhhhcCCCeeecCCCCCCCcCCC-CCCHHHHHHHHHHHh-ccCCCCCCCCCCCHHHHHHHHHHHhhcC-C
Confidence 344444444332 3457899999997322223 344555555544432 2334569899999999999999987643 3
Q ss_pred cccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc
Q 023599 106 AIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 106 ~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~ 185 (280)
.+.+++|++ |+|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++..++++++|++.+++.+.+
T Consensus 92 ~~~~~~i~~--t~G~~~al~~~--~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~ 167 (401)
T TIGR01264 92 PIEADDVVL--CSGCSHAIEMC--IAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE 167 (401)
T ss_pred CCCHHHEEE--CcChHHHHHHH--HHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc
Confidence 467899988 99999999999 77778899999999999999999999999999999983334688999999998865
Q ss_pred CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccc
Q 023599 186 APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTM 265 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 265 (280)
+++ +++++|||||||.+++.+++++|+++|++++++||+||+|.+|.++. ....++.++.. ..++|+++||||+|
T Consensus 168 ~~~---~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~-~~~vi~~~SfSK~~ 242 (401)
T TIGR01264 168 KTA---ALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSG-ATFEPLASLSS-TVPILSCGGLAKRW 242 (401)
T ss_pred Cce---EEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCC-cccccHHHcCC-CCcEEEEccCcccC
Confidence 543 77889999999999999999999999999999999999999999853 23344444422 23699999999999
Q ss_pred cccccccceEEEE
Q 023599 266 GLYGERVGALSVV 278 (280)
Q Consensus 266 ~~~G~RvG~~v~~ 278 (280)
++||+|+||++++
T Consensus 243 ~~~GlRiG~iv~~ 255 (401)
T TIGR01264 243 LVPGWRLGWIIIH 255 (401)
T ss_pred CCccceEEEEEec
Confidence 9999999999986
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=290.80 Aligned_cols=239 Identities=21% Similarity=0.224 Sum_probs=190.0
Q ss_pred hHHHHHHHhhc-CCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCC---
Q 023599 28 PIYAVMAAFRE-DPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGAD--- 103 (280)
Q Consensus 28 ~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~--- 103 (280)
++......+.. ..++++|+|+.|.| +......+++.+.++..+... .....+|++..|.++||+++++|+....
T Consensus 18 ~~~~~~~~~~~~~~~~~~i~l~~g~p-~~~~~~~p~~~~~~a~~~~~~-~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~ 95 (412)
T PTZ00433 18 PLRTVTDNAKPSPSPKSIIKLSVGDP-TLDGNLLTPAIQTKALVEAVD-SQECNGYPPTVGSPEAREAVATYWRNSFVHK 95 (412)
T ss_pred cHHHHHHhhccCCCCCCeeecCCcCC-CCcCCCCCCHHHHHHHHHHhh-cCCCCCCCCCCCcHHHHHHHHHHHHhhcccc
Confidence 34444455543 35678999999997 221112355666665555442 2335679999999999999999987532
Q ss_pred ---CccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHH
Q 023599 104 ---SPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 104 ---~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 180 (280)
+..+++++|++ |+|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++..++++++|++.++
T Consensus 96 ~~~~~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~ 171 (412)
T PTZ00433 96 ESLKSTIKKDNVVL--CSGVSHAILMA--LTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIR 171 (412)
T ss_pred ccccCCCChhhEEE--eCChHHHHHHH--HHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHH
Confidence 34467899998 99999999999 777788999999999999999999999999999999833346889999999
Q ss_pred HHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEec
Q 023599 181 QDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQS 260 (280)
Q Consensus 181 ~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 260 (280)
+.+.++++ +++++|||||||.+++.+++++|+++|+++|++||+||+|.+|.++. ....++..+. ...++|+++|
T Consensus 172 ~~~~~~~~---~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~-~~~~~i~~~S 246 (412)
T PTZ00433 172 RLVDDRTK---ALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG-ATFTSVADFD-TTVPRVILGG 246 (412)
T ss_pred HHhccCce---EEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCC-CCccchhhcc-CCCceEEEcc
Confidence 98866443 77889999999999999999999999999999999999999999863 2333444442 2236899999
Q ss_pred ccccccccccccceEEE
Q 023599 261 YSKTMGLYGERVGALSV 277 (280)
Q Consensus 261 ~SK~~~~~G~RvG~~v~ 277 (280)
|||+|++||+|+||+++
T Consensus 247 fSK~~~~pGlRlG~~i~ 263 (412)
T PTZ00433 247 TAKNLVVPGWRLGWLLL 263 (412)
T ss_pred chhhcCCCCeeEEEEEE
Confidence 99999999999999997
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=289.19 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=183.5
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSG 120 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~ 120 (280)
..+++|+.|.| + .+.+.+.++.+.+.+. .. ..+|.+..|.++||+++++++....+..++++ +|++ |+|+
T Consensus 26 ~~~i~l~~g~p-~---~~~p~~~~~~~~~~~~--~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~ 96 (387)
T PRK08912 26 HGAINLGQGFP-D---DPGPEDVRRAAADALL--DG-SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMV--TSGA 96 (387)
T ss_pred CCeEEccCCCC-C---CCCCHHHHHHHHHHHh--cC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEE--eCCc
Confidence 57899999996 2 2345566665555443 22 46799999999999999999876555556677 8988 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +..++.+||+|++++|+|..+...++..|++++.+++ +++++++|++.+++.+.++++ +++++||||
T Consensus 97 ~~al~~~--~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~---~v~l~~p~N 170 (387)
T PRK08912 97 TEALAAA--LLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL-EPPHWRLPRAALAAAFSPRTK---AVLLNNPLN 170 (387)
T ss_pred HHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccCcCCHHHHHHHhCccce---EEEEeCCCC
Confidence 9999999 7778899999999999999999999999999999998 455688999999998865443 777889999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
|||.+++.+++++|+++|++|+++||+||+|.++.++. ....++.++.+..+++|+++||||.||++|+|+||+++..
T Consensus 171 PtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 248 (387)
T PRK08912 171 PAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDG-RRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAP 248 (387)
T ss_pred CcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCC-CCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCH
Confidence 99999999999999999999999999999999998863 2233344443334689999999999999999999998753
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=289.34 Aligned_cols=242 Identities=15% Similarity=0.182 Sum_probs=187.6
Q ss_pred ccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHH
Q 023599 19 EQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKL 98 (280)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~ 98 (280)
++++..+.. +........ ...+.|+|+.|++ ..+ +.+.+.++..+... .. ..+|.+..|.++||++++++
T Consensus 9 ~~~~~~~~~-~~~~~~~~~--~~~~~i~l~~g~p----~~~-~~~~~~~~~~~~~~-~~-~~~Y~~~~G~~~lr~~ia~~ 78 (384)
T PRK12414 9 SKLPDVGTT-IFTVIGQLA--AQHDALNLSQGAP----NFA-PDPALVEGVARAMR-DG-HNQYAPMAGIAALREALAEK 78 (384)
T ss_pred HhcccCCcc-HHHHHHHHH--HhCCeEEcCCCCC----CCC-CCHHHHHHHHHHHH-hC-CCCcCCCCCcHHHHHHHHHH
Confidence 344444443 334433332 2357899999995 222 34444444444332 22 46799999999999999999
Q ss_pred HhCCCCccccC-CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHH
Q 023599 99 IFGADSPAIKE-NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 99 l~~~~~~~~~~-~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 177 (280)
+....+...++ ++|++ |+|+++++.++ +.+++.+||+|++++|+|..+...++..|++++.+++ +++++.+|++
T Consensus 79 l~~~~g~~~~~~~~i~i--t~g~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~ 153 (384)
T PRK12414 79 TERLYGARYDPASEVTV--IASASEGLYAA--ISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL-SPEDFRVNWD 153 (384)
T ss_pred HHHHhCCCCCCCCcEEE--ECChHHHHHHH--HHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEec-CccccccCHH
Confidence 86654444443 67888 99999999999 7788899999999999999999999999999999998 4556789999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
.+++.+.+++ ++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++.. ...++.++.+..+++|+
T Consensus 154 ~l~~~l~~~~---~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~~~i~ 229 (384)
T PRK12414 154 EVAAAITPRT---RMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA-RHHSMARHRELAERSVI 229 (384)
T ss_pred HHHhhcCccc---EEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC-CccCcccCcCccCcEEE
Confidence 9999886543 3788899999999999999999999999999999999999999998632 22233333333458999
Q ss_pred EecccccccccccccceEEEEc
Q 023599 258 AQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++||||.||+||+|+||++++.
T Consensus 230 ~~SfSK~~~~pGlRiG~~v~~~ 251 (384)
T PRK12414 230 VSSFGKSYHVTGWRVGYCLAPA 251 (384)
T ss_pred EecccccccCccceEEEEecCH
Confidence 9999999999999999998753
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=288.31 Aligned_cols=225 Identities=19% Similarity=0.124 Sum_probs=179.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc--ccCC-CeEEee
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA--IKEN-RVSTVQ 116 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~--~~~~-~i~~v~ 116 (280)
.+.+.++|+.|++ + ..+ ++.+.++.+... . ...+|.+..|.++||+++++|+.+.++.. ++++ +|++
T Consensus 26 ~~~~~i~l~~~~p-~---~~~-~~~~~~a~~~~~--~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~i-- 95 (393)
T TIGR03538 26 ASKPPIALSIGEP-K---HPT-PAFVLEALRENL--H-GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLP-- 95 (393)
T ss_pred cCCCeEEecCCCC-C---CCC-CHHHHHHHHHHh--h-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEE--
Confidence 4578999999995 2 223 344544444433 2 25679999999999999999987765443 5664 7888
Q ss_pred cccchhHHHHHHHHHHhhcCCCE--EEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHT--VYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~--Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~ 194 (280)
|+|+++++.++ +..++.+||+ |++++|+|..|...++..|++++.+++.+++++.+|++.+++++.++++ +++
T Consensus 96 t~Ga~~al~~~--~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k---~i~ 170 (393)
T TIGR03538 96 VNGTREALFAF--AQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ---LLF 170 (393)
T ss_pred CCCcHHHHHHH--HHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcce---EEE
Confidence 99999999999 7777899986 9999999999999999999999999983233578899999998865443 777
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH-HHHhhh----cCCeEEEEecccccccccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP-VRMFVA----DGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~----~~~~~i~~~S~SK~~~~~G 269 (280)
++|||||||.+++.+++++|+++|++|+++||+||+|.++.++......+ ...+.. ..+++|+++||||.|++||
T Consensus 171 l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G 250 (393)
T TIGR03538 171 VCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPG 250 (393)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcc
Confidence 89999999999999999999999999999999999999998853212222 222211 2468999999999999999
Q ss_pred cccceEEEEc
Q 023599 270 ERVGALSVVR 279 (280)
Q Consensus 270 ~RvG~~v~~~ 279 (280)
+|+||++++.
T Consensus 251 lRvG~~i~~~ 260 (393)
T TIGR03538 251 LRSGFVAGDA 260 (393)
T ss_pred cceEEEecCH
Confidence 9999998753
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=287.67 Aligned_cols=237 Identities=20% Similarity=0.198 Sum_probs=186.4
Q ss_pred cCCChHHHHHHHhh--cCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhC
Q 023599 24 AADIPIYAVMAAFR--EDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFG 101 (280)
Q Consensus 24 ~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~ 101 (280)
..+..+.++..... ...++++++|+.|++ ..+++....+...+.+. . ...+|++..|.++||+++++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~----~~~~~~~v~~a~~~~~~--~-~~~~Y~~~~g~~~lr~~ia~~~~~ 84 (387)
T PRK08960 12 IEPFHVMALLARANELEAAGHDVIHLEIGEP----DFTTAEPIVAAGQAALA--A-GHTRYTAARGLPALREAIAGFYAQ 84 (387)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEeCCCCC----CCCCCHHHHHHHHHHHh--c-CCCccCCCCCCHHHHHHHHHHHHH
Confidence 33444444443332 123467899999995 22334444444333333 2 235799999999999999999876
Q ss_pred CCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHH
Q 023599 102 ADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQ 181 (280)
Q Consensus 102 ~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 181 (280)
..+..+++++|++ |+|+++++.++ +..++.+||+|++++|+|+.+...++..|++++.+++..+.++.+|++.+++
T Consensus 85 ~~g~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 160 (387)
T PRK08960 85 RYGVDVDPERILV--TPGGSGALLLA--SSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVER 160 (387)
T ss_pred HhCCCCChhhEEE--ccCcHHHHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHH
Confidence 5555567899998 99999999999 6777899999999999999999999999999999998323357899999999
Q ss_pred HHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecc
Q 023599 182 DLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSY 261 (280)
Q Consensus 182 ~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 261 (280)
.+.++++ ++++++||||||.+++.+++++|+++|++|+++||+||+|.++.++. ...++ ....+++|+++||
T Consensus 161 ~~~~~~~---~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~--~~~~~---~~~~~~vi~~~S~ 232 (387)
T PRK08960 161 HWNADTV---GALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGV--DAASV---LEVDDDAFVLNSF 232 (387)
T ss_pred HhCccce---EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC--CCCCh---hhccCCEEEEeec
Confidence 8875533 77889999999999999999999999999999999999999998853 22222 2334689999999
Q ss_pred cccccccccccceEEEEc
Q 023599 262 SKTMGLYGERVGALSVVR 279 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~~ 279 (280)
||.||+||+|+||++++.
T Consensus 233 SK~~g~~GlRiG~~~~~~ 250 (387)
T PRK08960 233 SKYFGMTGWRLGWLVAPP 250 (387)
T ss_pred ccccCCcccEEEEEEcCH
Confidence 999999999999999753
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=292.96 Aligned_cols=224 Identities=19% Similarity=0.269 Sum_probs=193.6
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccC-CC-CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-SA-DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
+..++|+.|.+ +...++...++++.....+.. .. ...|.+..|.++||+++++++....+....+++|++ |+|
T Consensus 89 ~~~i~f~~g~p---~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~Iii--T~G 163 (459)
T COG1167 89 PSVIDFAGGLP---DPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVI--TSG 163 (459)
T ss_pred CceecCCCCCC---CcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEE--eCC
Confidence 78899999986 334578888888877766422 22 467888899999999999999866667778889999 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++|++++ +..++.|||+|++++|+|.....+++.+|++++.||+ |+ .++|+|.|++.+... +.+.++++++.|
T Consensus 164 ~q~al~l~--~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~-d~--~G~~~e~le~~~~~~-~~k~~y~~P~~q 237 (459)
T COG1167 164 AQQALDLL--LRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPV-DE--DGIDPEALEEALAQW-KPKAVYVTPTFQ 237 (459)
T ss_pred HHHHHHHH--HHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCC-CC--CCCCHHHHHHHHhhc-CCcEEEECCCCC
Confidence 99999999 6677889999999999999999999999999999999 44 379999999999876 456799999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||||.+||.+++++|+++|++|+++||+||.|++|.++. .+.+++..+ +..+|||+++||||++. ||+|+||++++.
T Consensus 238 NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~-~p~~~l~~l-d~~~rViy~gSFSK~l~-PglRlG~vv~p~ 314 (459)
T COG1167 238 NPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDG-PPPPPLKAL-DAPGRVIYLGSFSKTLA-PGLRLGYVVAPP 314 (459)
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCC-CCCCChHhh-CCCCCEEEEeeehhhcc-cccceeeeeCCH
Confidence 999999999999999999999999999999999999973 234455655 44679999999999997 999999999874
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=290.14 Aligned_cols=220 Identities=16% Similarity=0.142 Sum_probs=169.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhcc--CCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND--LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
++++++|+.|++ +.+ .++...+...+.+... .....+|.+..|.++||+++++|+...++..+++++|++ |+
T Consensus 33 ~~~~i~l~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~i--t~ 106 (409)
T PRK07590 33 EAKIIRLGIGDV-TQP---LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFI--SD 106 (409)
T ss_pred CCceEEecCcCC-CCC---CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEE--CC
Confidence 457999999995 322 2332233222222210 113467999999999999999998777766778899998 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCe-----------eeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLA-----------MKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~-----------~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
|+++++.++ + .++.+||+|++++|+|..|...++..|++ ++.+++..++++.+|.+. +
T Consensus 107 Ga~~al~~l--~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~-- 175 (409)
T PRK07590 107 GAKCDTGNI--L-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------E-- 175 (409)
T ss_pred CHHHHHHHH--H-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc------c--
Confidence 999999876 3 45689999999999999999999999987 889998322334444321 2
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
+..+++++|||||||.+++.+++++|+++|++|+++||+||+|.+|.++.. ...++.++....+++|+++||||+||+
T Consensus 176 -~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~~ 253 (409)
T PRK07590 176 -KVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS-LPHSIYEIEGARECAIEFRSFSKTAGF 253 (409)
T ss_pred -CceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC-CCcchhhCCCcccceEEEecCccccCC
Confidence 234777889999999999999999999999999999999999999988532 223344443334589999999999999
Q ss_pred cccccceEEEEc
Q 023599 268 YGERVGALSVVR 279 (280)
Q Consensus 268 ~G~RvG~~v~~~ 279 (280)
||+|+||++++.
T Consensus 254 pGlRiG~~i~~~ 265 (409)
T PRK07590 254 TGTRCAYTVVPK 265 (409)
T ss_pred cCceeEEEEcCH
Confidence 999999999763
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=284.04 Aligned_cols=235 Identities=17% Similarity=0.160 Sum_probs=186.8
Q ss_pred HHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcccc
Q 023599 29 IYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIK 108 (280)
Q Consensus 29 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~ 108 (280)
+...+++. ...+.++++|+.|.| +.-+.+.+...++++.+.+. ...+|++..|.++||+++++++...+...++
T Consensus 21 ~~~~~~~~-~~~~~~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~ 94 (404)
T PRK09265 21 VLKEAKRL-EEEGHKILKLNIGNP-APFGFEAPDEILRDVIRNLP----TAQGYSDSKGLFSARKAIMQYYQQKGIPDVD 94 (404)
T ss_pred HHHHHHHH-HHcCCCeEEecCCCC-CcCCCCCCHHHHHHHHHHhh----cCCCCCCCCCcHHHHHHHHHHHhccCCCCCC
Confidence 33444444 235578999999986 22233345555555554433 2467999999999999999998765544567
Q ss_pred CCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC
Q 023599 109 ENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 109 ~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~ 188 (280)
+++|++ |+|+++++.++ +.+++.+||+|++++|+|..+...++..|++++.+++..++++.+|++.+++.+.++++
T Consensus 95 ~~~i~~--t~G~~~~l~~~--~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~ 170 (404)
T PRK09265 95 VDDIYI--GNGVSELIVMA--MQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTK 170 (404)
T ss_pred cccEEE--eCChHHHHHHH--HHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccce
Confidence 899998 99999999999 77778899999999999999999999999999998873234577999999998865544
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 268 (280)
+++++|||||||.+++.+++++|+++|+++|++||+||+|.++.++. ....++.++. ...++|+++||||+||+|
T Consensus 171 ---~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~-~~~~vi~~~S~SK~~~~p 245 (404)
T PRK09265 171 ---AIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDG-AVHISIASLA-PDLLCVTFNGLSKAYRVA 245 (404)
T ss_pred ---EEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCC-CCcCCHHHcC-CCceEEEEecchhhccCc
Confidence 78888999999999999999999999999999999999999998853 2333444442 234799999999999999
Q ss_pred ccccceEEEE
Q 023599 269 GERVGALSVV 278 (280)
Q Consensus 269 G~RvG~~v~~ 278 (280)
|+|+||+++.
T Consensus 246 GlRiG~~v~~ 255 (404)
T PRK09265 246 GFRVGWMVLS 255 (404)
T ss_pred ccceEEEEEe
Confidence 9999999974
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=283.33 Aligned_cols=241 Identities=17% Similarity=0.150 Sum_probs=189.5
Q ss_pred ChHHHHHHHhhcC--CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q 023599 27 IPIYAVMAAFRED--PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADS 104 (280)
Q Consensus 27 ~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~ 104 (280)
+++.+....++.. .+.++++|+.|.|...+..+++ +.+.++..+... .....+|.+..|.++||+++++++....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~-~~~~~~~~~~l~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~ 91 (403)
T TIGR01265 14 NPIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRTD-PEAEEAVKDALR-SGKFNGYAPSVGALAAREAVAEYLSSDLP 91 (403)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCCCCccCCCCCC-HHHHHHHHHHHh-cCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Confidence 3455555555432 3578999999997211223333 444444444332 22235798999999999999999876555
Q ss_pred ccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHh
Q 023599 105 PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 105 ~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
..+.+++|++ |+|+++++.++ +.+++.+||+|++++|+|..+...++..|++++.+++..++++++|++.+++.+.
T Consensus 92 ~~~~~~~ii~--t~G~t~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 167 (403)
T TIGR01265 92 GKLTADDVVL--TSGCSQAIEIC--IEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALAD 167 (403)
T ss_pred CCCCHHHEEE--ecChHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhC
Confidence 5567789988 99999999999 7777889999999999999999999999999999988333457899999999886
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
++++ ++++++||||||.+++.+++++|+++|+++|++||+||+|.+|.++. ....++.++. ...++|+++||||+
T Consensus 168 ~~~~---~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~-~~~~vi~~~S~SK~ 242 (403)
T TIGR01265 168 EKTV---AIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD-APFIPMASFA-SIVPVLSLGGISKR 242 (403)
T ss_pred cCcc---EEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC-CCccchhhhc-cCCcEEEEeecccc
Confidence 6544 78889999999999999999999999999999999999999999863 2334455552 33479999999999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
|++||+|+||+++.
T Consensus 243 ~~~pGlRiG~~v~~ 256 (403)
T TIGR01265 243 WVVPGWRLGWIIIH 256 (403)
T ss_pred cCCCcceEEEEEEe
Confidence 99999999999984
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=283.24 Aligned_cols=240 Identities=16% Similarity=0.178 Sum_probs=189.6
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIF 100 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~ 100 (280)
+....+..+.+....+. ..+..|+|+.|.| + .+. ++.+.++..+.. .....+|.+..|.++||+++++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~p-~---~~~-~~~~~~a~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~l~ 79 (387)
T PRK07683 9 VKDIQISGIRQFSNMVQ--NYDNLISLTIGQP-D---FPT-PSHVKEAAKRAI--TENYTSYTHNAGLLELRKAACNFVK 79 (387)
T ss_pred HHhCCccHHHHHHHHHH--hcCCeEEecCCCC-C---CCC-CHHHHHHHHHHH--hcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 33334444544444442 2357899999985 2 222 344555555544 2224679889999999999999997
Q ss_pred CCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHH
Q 023599 101 GADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGM 179 (280)
Q Consensus 101 ~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l 179 (280)
..++..++++ +|++ |+|+++|+.++ +..++.+||+|+++.|+|..|...++..|+++++++. +++++.+|.+.+
T Consensus 80 ~~~g~~~~~~~~I~~--t~G~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l 154 (387)
T PRK07683 80 DKYDLHYSPESEIIV--TIGASEAIDIA--FRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDT-RSTGFRLTAEAL 154 (387)
T ss_pred HHhCCCCCCCCcEEE--eCChHHHHHHH--HHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeec-CcccCCCCHHHH
Confidence 6655556677 8988 99999999999 6777889999999999999999999999999999998 556677889999
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEe
Q 023599 180 LQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQ 259 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (280)
++.+.++++ ++++++||||||.+++.+++++|+++|+++|++||+||+|.++.++. +..++.++.+..+++|+++
T Consensus 155 ~~~~~~~~~---~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~ 229 (387)
T PRK07683 155 ENAITEKTR---CVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ--PHTSIAHFPEMREKTIVIN 229 (387)
T ss_pred HHhcCcCce---EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC--CcCChhhccCCcCCeEEEe
Confidence 998865443 77889999999999999999999999999999999999999998853 2234444433456899999
Q ss_pred cccccccccccccceEEEEc
Q 023599 260 SYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v~~~ 279 (280)
||||.||+||+|+||++++.
T Consensus 230 s~SK~~~~pGlRiG~i~~~~ 249 (387)
T PRK07683 230 GLSKSHSMTGWRIGFLFAPS 249 (387)
T ss_pred eccccccCccceeEEEEcCH
Confidence 99999999999999998753
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=282.39 Aligned_cols=221 Identities=17% Similarity=0.155 Sum_probs=178.7
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSG 120 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~ 120 (280)
.+.|+|+.|++ +. +.+. .+.++..+... .. ..+|.+..|.++||+++++++....+..++++ +|++ |+|+
T Consensus 20 ~~~i~l~~~~~-~~---~~~~-~~~~~~~~~~~-~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~--t~G~ 90 (378)
T PRK07682 20 EGVISLGVGEP-DF---VTPW-NVREASIRSLE-QG-YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIV--TVGA 90 (378)
T ss_pred CCeEEeCCCCC-CC---CCCH-HHHHHHHHHHh-cC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCh
Confidence 47899999996 22 2232 33333333221 22 46798899999999999999876545545555 7888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++|+.++ +..++.+||+|++++|+|..|...++..|.+++.+++..++++++|++.+++++.+++ .++++++|||
T Consensus 91 ~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~v~~~~p~N 165 (378)
T PRK07682 91 SQALDVA--MRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKT---KAILLCSPNN 165 (378)
T ss_pred HHHHHHH--HHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCccc---EEEEEECCCC
Confidence 9999999 7778899999999999999999999999999999997323457899999999886543 3777899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|++|+++||+||+|.++.++. ...++..+.+..+++++++||||.|++||+|+||++++
T Consensus 166 PtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~ 241 (378)
T PRK07682 166 PTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE--AYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP 241 (378)
T ss_pred CcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC--CCCChhhcccccCCEEEEecCcccccChhhhhhhhhcC
Confidence 99999999999999999999999999999999999863 22334444444568999999999999999999999875
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=290.27 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=178.9
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhc----------cCCCCCCCCCCCCCHHHHHHHHHHHhCCCCc--cccC
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN----------DLSADKEYLPITGLPEFNKLSAKLIFGADSP--AIKE 109 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~--~~~~ 109 (280)
..+|+|+.++ |.. +.+.+....+.... .......|++..|.++||+++|+|+.+..+. .+++
T Consensus 38 ~g~i~L~~~E----n~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~ 111 (468)
T PLN02450 38 SGIIQMGLAE----NQL--SFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDP 111 (468)
T ss_pred CeeEEeehhH----hHh--hHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcCh
Confidence 3689999998 432 33555555544311 0012345888899999999999998765432 3578
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCCeeeEEEeecCCCCCcCHHHHHHHHhcC--
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-- 186 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-- 186 (280)
++|++ |+|+++++.++ +.+++.+||.|++++|+|..|...+. ..|++++.+++..++++.+|++.+++++.+.
T Consensus 112 ~~Iii--t~Ga~~al~~l--~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~ 187 (468)
T PLN02450 112 NKLVL--TAGATSANETL--MFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQK 187 (468)
T ss_pred HHeEE--ccChHHHHHHH--HHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHh
Confidence 99998 99999999999 77888999999999999999988888 5899999999833456788999999988652
Q ss_pred -CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh--------cCCeEEE
Q 023599 187 -PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA--------DGGECLV 257 (280)
Q Consensus 187 -~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--------~~~~~i~ 257 (280)
..+..+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|+.. +..++.++.+ ..+++++
T Consensus 188 ~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~-~~~s~l~~~~~~~~~~~~~~~~vi~ 266 (468)
T PLN02450 188 LNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP-GFVSVMEVLKDRKLENTDVSNRVHI 266 (468)
T ss_pred cCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC-CcccHHHHhhhcccccCCCCCcEEE
Confidence 22345788889999999999999999999999999999999999999988532 2323333221 2469999
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++||||.|++||+|+||++..
T Consensus 267 l~S~SK~~~l~GlRiG~li~~ 287 (468)
T PLN02450 267 VYSLSKDLGLPGFRVGAIYSN 287 (468)
T ss_pred EEeccccCCCCCccEEEEEEC
Confidence 999999999999999999875
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=280.85 Aligned_cols=243 Identities=14% Similarity=0.177 Sum_probs=188.7
Q ss_pred ccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHH
Q 023599 19 EQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKL 98 (280)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~ 98 (280)
+++.......+.++.+... ..++.|+|+.|.+ + ... ++.+.++..+... .. ...|.+..|.++||++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~-~---~~~-~~~~~~~~~~~~~-~~-~~~Y~~~~g~~~lr~~ia~~ 79 (391)
T PRK07309 9 KQLDKIEVSLIRQFDQSIS--DIPGILKLTLGEP-D---FTT-PDHVKEAAKRAID-AN-QSHYTGMAGLLELRQAAADF 79 (391)
T ss_pred hhhhhcCccHHHHHHHHHH--hcCCeEEcCCCCC-C---CCC-CHHHHHHHHHHHh-cC-CCCCCCCCCcHHHHHHHHHH
Confidence 3444444444444433231 2357999999996 2 222 3444444444331 12 34688999999999999999
Q ss_pred HhCCCCcccc-CCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHH
Q 023599 99 IFGADSPAIK-ENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 99 l~~~~~~~~~-~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 177 (280)
+...++..+. +++|++ |+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.+++ +++++.+|++
T Consensus 80 ~~~~~~~~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~ 154 (391)
T PRK07309 80 VKEKYNLDYAPENEILV--TIGATEALSAS--LTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT-TENDFVLTPE 154 (391)
T ss_pred HHHHhCCCCCCCCcEEE--eCChHHHHHHH--HHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEec-CCcCCcCCHH
Confidence 8766554444 478988 99999999999 7777899999999999999999999999999999998 5556789999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
.+++++.+..++..++++++||||||.+++.+++++|+++|++|++++|+||+|.++.++. ....++..+ ..+++|+
T Consensus 155 ~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~--~~~~~i~ 231 (391)
T PRK07309 155 MLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTG-EPHVSIAEY--LPDQTIL 231 (391)
T ss_pred HHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCC-CCCCCHHHh--ccCCEEE
Confidence 9999987543344588889999999999999999999999999999999999999999853 233333333 2368999
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++||||+||+||+|+||++++
T Consensus 232 ~~S~SK~~g~~GlRvG~~v~~ 252 (391)
T PRK07309 232 INGLSKSHAMTGWRIGLIFAP 252 (391)
T ss_pred EecChhhccCccceeEEEEeC
Confidence 999999999999999999975
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=282.53 Aligned_cols=221 Identities=19% Similarity=0.207 Sum_probs=179.6
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.++++++|+.|.+ + .+.++.. .++..+... . ....|.+..|.++||+++++|+...++..+++++|++ |+|
T Consensus 28 ~~~~~i~l~~~~~-~---~~~~~~~-~~~~~~~~~-~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~--t~G 98 (388)
T PRK07337 28 AGRDIIHMGIGEP-D---FTAPEPV-VEAAARALR-R-GVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVV--TAG 98 (388)
T ss_pred cCCCEEEeCCcCC-C---CCCCHHH-HHHHHHHHh-c-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEE--ecC
Confidence 4568999999995 2 2233333 333443331 2 2467999999999999999998766555567899988 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +..++.+||+|++++|+|..+...++..|++++.+++..++++.+|++.+++.+.++++ ++++++||
T Consensus 99 ~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~v~l~~p~ 173 (388)
T PRK07337 99 ASAALLLA--CLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTR---GVLLASPS 173 (388)
T ss_pred cHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccce---EEEEECCC
Confidence 99999999 66778999999999999999999999999999999983234588999999998875543 77889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||||.+++.+++++|+++|+++++++|+||+|.++.++.. ..+. ....+++|+++||||.||+||+|+||+++..
T Consensus 174 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~---~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~ 248 (388)
T PRK07337 174 NPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA--PVSA---LSLGDDVITINSFSKYFNMTGWRLGWLVVPE 248 (388)
T ss_pred CCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC--CcCh---hhccCCEEEEEechhhcCCchhheeeeecCH
Confidence 9999999999999999999999999999999999988532 2122 2234689999999999999999999998753
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=288.45 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=189.0
Q ss_pred cCCChHHHHHHHhhcC-----CCC-CeeEeecceeecCCCC--ccchHHHHHHHHH-Hhc-----cCCCCCCCCCCCCCH
Q 023599 24 AADIPIYAVMAAFRED-----PSP-MKLNLGFGVYRTEEGK--PLLLNAVRQAEQL-LVN-----DLSADKEYLPITGLP 89 (280)
Q Consensus 24 ~~~~~~~~~~~~~~~~-----~~~-~~i~l~~g~~~~~~~~--~~~~~~~~~~~~~-~~~-----~~~~~~~y~~~~G~~ 89 (280)
++..+.+.-++.|..+ .++ .+|+|+..+ |.+ +...+.+++.... +.. .-.....|.+..|.+
T Consensus 22 ~~~~~~~~~~~~~~~~~y~~~~np~g~i~l~~aE----N~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~ 97 (496)
T PLN02376 22 GENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAE----NQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLK 97 (496)
T ss_pred CCCCchHHHHHHHhCCCCCcccCCCceEEeecch----hhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcH
Confidence 4555677777777543 223 689999987 543 3334444443221 100 011234588899999
Q ss_pred HHHHHHHHHHhCCCC--ccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCCeeeEEEe
Q 023599 90 EFNKLSAKLIFGADS--PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGLAMKTYHY 166 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~--~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~~~~~v~~ 166 (280)
+||+++|+|+...++ ..+++++|++ |+|++++++++ +..++.|||.|++++|+|+.|...+. ..|++++.+++
T Consensus 98 ~LR~aiA~~l~~~~g~~v~v~pe~Ivi--t~Ga~~al~~l--~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~ 173 (496)
T PLN02376 98 KFRQAIAHFMGKARGGKVTFDPERVVM--SGGATGANETI--MFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPC 173 (496)
T ss_pred HHHHHHHHHHHHHhCCCCcCChhhEEE--ccchHHHHHHH--HHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeC
Confidence 999999999876555 4467899998 99999999999 78889999999999999999998887 58999999999
Q ss_pred ecCCCCCcCHHHHHHHHhc---CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 167 YDPKTNGLDFQGMLQDLGA---APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~---~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
..++++++|++.+++++.. ...+.++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+. .+..
T Consensus 174 ~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~-~~~~ 252 (496)
T PLN02376 174 SSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG-GDFV 252 (496)
T ss_pred CCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCC-CCcc
Confidence 4334689999999876532 12234577889999999999999999999999999999999999999999863 2344
Q ss_pred HHHHhhhc-------CCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVAD-------GGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~-------~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++.++... .+++++++||||.||+||+|+||++..
T Consensus 253 si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~ 294 (496)
T PLN02376 253 SVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSF 294 (496)
T ss_pred cHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEEC
Confidence 55555321 136788999999999999999999874
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=281.14 Aligned_cols=221 Identities=18% Similarity=0.217 Sum_probs=178.7
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcccc-CCCeEEeecccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIK-ENRVSTVQCLSG 120 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~-~~~i~~v~t~g~ 120 (280)
+++++|+.|.+ ..+++.. +.++..+... ......|.+..|.+++|+++++++....+.... +++|++ |+|+
T Consensus 27 ~~~~~l~~g~~----~~~~~~~-~~~a~~~~~~-~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~--t~G~ 98 (389)
T PRK05957 27 PGTISLGQGVV----SYPPPPE-AIEALNNFLA-NPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVV--TAGS 98 (389)
T ss_pred CCeEEccCCCC----CCCCCHH-HHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEE--eCCh
Confidence 57899999995 2233433 4444444332 222457999999999999999998665444444 578888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++..+ +..++.+||+|++++|+|..+...++..|++++.++. ++++++|++.++++++++++ +++++||||
T Consensus 99 ~~~l~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~~k---lv~~~~p~N 171 (389)
T PRK05957 99 NMAFMNA--ILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT--DDNYQLQPEAIEQAITPKTR---AIVTISPNN 171 (389)
T ss_pred HHHHHHH--HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeec--CCCCCcCHHHHHHhcCcCce---EEEEeCCCC
Confidence 9999988 6677889999999999999999988999999999998 34678999999999876544 778899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|+++|++||+||+|.++.++.. ...++..+.+...++|+++||||.||+||+|+||+++.
T Consensus 172 PtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 248 (389)
T PRK05957 172 PTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV-KHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIP 248 (389)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC-CccChhhCCCccCcEEEEecchhhccCccceeEEEecC
Confidence 999999999999999999999999999999999998532 22233333344569999999999999999999999875
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=279.90 Aligned_cols=228 Identities=21% Similarity=0.263 Sum_probs=181.0
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccc--cCCCeEEeeccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAI--KENRVSTVQCLS 119 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~--~~~~i~~v~t~g 119 (280)
.++++.++|.+ ...+.+...+.++++.+... ....++|.+..|.++||+++++++.+.+.... ..++|++ |+|
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~i--t~G 77 (388)
T PRK08637 3 ATKYNATIGMA-TEKGGPMYLSSLQDLLNDLT--PDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIV--TNA 77 (388)
T ss_pred ccceecceeeE-ecCCCcchHHHHHHHHHhhc--cccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeE--ccc
Confidence 46789999988 44455677788877777654 34467899999999999999999876543211 2257777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCCeeeEEEeecCCCCCcCHHHHHHHHhcC-CCCcEEEEecC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-PSGAIVLLQAS 197 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~~v~~~~ 197 (280)
+++++.++ +..++.+||+|++++|+|+.|...+. ..|++++.+++ ..+++++|++.+++.++.. .+.+.+++++|
T Consensus 78 ~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~-~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 154 (388)
T PRK08637 78 LTHGLSLV--ADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPI-FDEDGGFDTDALKEALQAAYNKGKVIVILNF 154 (388)
T ss_pred hHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecc-cCCCCcCCHHHHHHHHHhhccCCCEEEEEeC
Confidence 99999999 77778999999999999999998865 68999999998 3345679999999988721 12345788999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-----CCceeEEcccCCCcccCcCCChhHH-HHhhhcCCeE--EEEecccccccccc
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRL-----KRLLPFFDCAYQGFVMNMDADALPV-RMFVADGGEC--LVAQSYSKTMGLYG 269 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~-----~~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~~~~~--i~~~S~SK~~~~~G 269 (280)
||||||.+++.+++++|+++|++ |+++||+||+|.+|.++.. ...++ ..+.+..+++ ++++||||.|++||
T Consensus 155 P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~-~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG 233 (388)
T PRK08637 155 PNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDS-YKESLFAALANLHSNILAVKLDGATKEEFVWG 233 (388)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCc-cchhhHHHhhcccccceEEEeccccccCCCcc
Confidence 99999999999999999998875 8999999999999998642 23332 2333444564 55679999999999
Q ss_pred cccceEEEE
Q 023599 270 ERVGALSVV 278 (280)
Q Consensus 270 ~RvG~~v~~ 278 (280)
+|+||++++
T Consensus 234 lRlG~~~~~ 242 (388)
T PRK08637 234 FRVGFITFG 242 (388)
T ss_pred cceEEEEEc
Confidence 999999975
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=279.80 Aligned_cols=226 Identities=19% Similarity=0.135 Sum_probs=181.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+.+.++|+.|++ .. .+.+.+.++..+... ......|.+..|.++||+++++++...++..+++++|++ |+|
T Consensus 27 ~~~~~i~l~~~~~----~~-~~~~~~~~~~~~~~~-~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G 98 (386)
T PRK07550 27 ADGPLIDLSQAVP----GY-PPPPELLRALAEAAA-DPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHI--TSG 98 (386)
T ss_pred cCCCeEEeCCCCC----CC-CCCHHHHHHHHHHHh-CcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEE--ecC
Confidence 4567899999995 22 234445555444432 233567989999999999999998776666677899998 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +..++.+||+|++++|+|..+...++..|++++.+++.++.++.+|.+.+++.+.++++ ++++++||
T Consensus 99 ~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~---~v~~~~P~ 173 (386)
T PRK07550 99 CNQAFWAA--MVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTR---AIALVTPN 173 (386)
T ss_pred cHHHHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCc---EEEEeCCC
Confidence 99999999 66778899999999999999999999999999999983234567899999999876544 66677899
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||||.+++.+++++|+++|+++|++||+||+|.+|.++.... .++.+..+.+.++++++||||+||+||+|+||+++..
T Consensus 174 NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~ 252 (386)
T PRK07550 174 NPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAP-HDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASP 252 (386)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCC-cchhhCCCccccEEEEecchhhccCcccceEeeecCH
Confidence 999999999999999999999999999999999997642221 2222222335689999999999999999999998753
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=279.16 Aligned_cols=230 Identities=14% Similarity=0.033 Sum_probs=175.6
Q ss_pred HHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcccc
Q 023599 29 IYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIK 108 (280)
Q Consensus 29 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~ 108 (280)
+.+..+..+...+.++++|+.|++ + .+.+ +.+.++..+.. .....|.+..|.++||+++++++...++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~i~l~~~~p-~---~~~~-~~~~~a~~~~~---~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~ 82 (374)
T PRK05839 11 LRELLKEITPNKEYKGLDLTIGEP-Q---FETP-KFIQDALKNNA---HLLNKYPKSAGEESLREAQRGFFKRRFKIELK 82 (374)
T ss_pred HHHHHHHhhhcCCCCeEEcCCCCC-C---CCCC-HHHHHHHHHHh---hccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 334444453322558999999996 2 2233 45555444432 12567999999999999999999776665677
Q ss_pred CCCeEEeecccchhHHHHHHHHHHhh--cCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 109 ENRVSTVQCLSGSGSLRIGADFLAKH--YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 109 ~~~i~~v~t~g~~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
+++|++ |+|+++++..+ +..++ .+||.|+++.|+|..|...++..|++++++++..++++.+|.+..+ + ++
T Consensus 83 ~~~I~i--t~G~~~al~~~--~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~ 155 (374)
T PRK05839 83 ENELIP--TFGTREVLFNF--PQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QE 155 (374)
T ss_pred cceEEE--ecCcHHHHHHH--HHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-cc
Confidence 899998 99999999888 55443 4789999999999999999999999999999832334666654332 2 22
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-----hcCCeEEEEecc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV-----ADGGECLVAQSY 261 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~S~ 261 (280)
+ .+++++|||||||.+++.+++++|+++|+++|++||+||+|.++.++. ..+++.... ...+++|+++||
T Consensus 156 ~---k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~--~~~s~~~~~~~~~~~~~~~vi~~~Sf 230 (374)
T PRK05839 156 V---DLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT--PPPSLLEASILVGNESFKNVLVINSI 230 (374)
T ss_pred c---cEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC--CCCCHhhhhcccCccccCcEEEEecc
Confidence 3 377889999999999999999999999999999999999999987642 222322221 123699999999
Q ss_pred cccccccccccceEEEE
Q 023599 262 SKTMGLYGERVGALSVV 278 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~ 278 (280)
||+|++||+|+||+++.
T Consensus 231 SK~~~~~GlRiG~ii~~ 247 (374)
T PRK05839 231 SKRSSAPGLRSGFIAGD 247 (374)
T ss_pred ccccCCccceeEEEecC
Confidence 99999999999999875
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=278.78 Aligned_cols=224 Identities=20% Similarity=0.164 Sum_probs=181.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
+++++|+.|++ ..+.+ +.+.++..+... . ...+|.+..|.++||+++++++....+..+++++|++ |+|++
T Consensus 24 ~~~i~l~~g~~----~~~~~-~~~~~~~~~~~~-~-~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~--t~g~~ 94 (382)
T PRK06108 24 EGVLPLWFGES----DLPTP-DFIRDAAAAALA-D-GETFYTHNLGIPELREALARYVSRLHGVATPPERIAV--TSSGV 94 (382)
T ss_pred CCeEEecCCCC----CCCCC-HHHHHHHHHHHh-c-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEE--eCChH
Confidence 57899999995 22233 444444444432 2 2356999999999999999998765555567899998 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC-CCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP-KTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+++..+ .++.+|++.+++.+.+++ +++++++|||
T Consensus 95 ~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~---~~i~l~~p~N 169 (382)
T PRK06108 95 QALMLA--AQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRT---RALFINSPNN 169 (382)
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccc---eEEEEECCCC
Confidence 999999 7777889999999999999999999999999999998322 346799999999886543 3788889999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
|||.+++.+++++|+++|+++++++|+||+|.++.++.....+++..+.+..+++++++||||.||++|+|+||+++..
T Consensus 170 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~ 248 (382)
T PRK06108 170 PTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPP 248 (382)
T ss_pred CCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCH
Confidence 9999999999999999999999999999999999885222233334443445689999999999999999999998753
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=280.42 Aligned_cols=221 Identities=17% Similarity=0.187 Sum_probs=179.4
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSG 120 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~ 120 (280)
.+.|+|+.|.+ +.+ .+ +.+.++.++... ....+|.+..|.++||+++++++....+....++ +|++ |+|+
T Consensus 30 ~~~i~l~~g~~-~~~---~~-~~~~~~~~~~~~--~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~--t~G~ 100 (386)
T PRK09082 30 HGAINLSQGFP-DFD---GP-PYLVEALAYAMA--AGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITV--TAGA 100 (386)
T ss_pred CCEEEecCCCC-CCC---CC-HHHHHHHHHHHH--cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCH
Confidence 47899999986 322 22 333344444331 2245799999999999999999865544444444 7887 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++ +++++.+|++.+++.+.++++ ++++++|||
T Consensus 101 ~~al~~~--~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~---~v~l~~p~N 174 (386)
T PRK09082 101 TEALFAA--ILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVAL-QPPDFRVDWQRFAAAISPRTR---LIILNTPHN 174 (386)
T ss_pred HHHHHHH--HHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccccCCHHHHHHhcCccce---EEEEeCCCC
Confidence 9999999 7777899999999999999999999999999999998 455688999999999865433 778889999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|++|++++|+||+|.++.++.. ...++.++.+..+++|+++||||.||+||+|+||++++
T Consensus 175 PtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~-~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~ 251 (386)
T PRK09082 175 PSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA-GHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP 251 (386)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC-CCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC
Confidence 999999999999999999999999999999999998532 23344444444579999999999999999999999875
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=278.21 Aligned_cols=241 Identities=20% Similarity=0.191 Sum_probs=187.6
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIF 100 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~ 100 (280)
+...+...+.++..... ..++++|+.|.| +.+ .+.+.++.+.+.+. .. ..+|.+..|.++||+++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~---~~~~i~l~~g~p-~~~---~~~~~~~~~~~~~~--~~-~~~Y~~~~g~~~lr~~ia~~~~ 75 (387)
T PRK07777 6 LRPFGTTIFAEMSALAV---RTGAVNLGQGFP-DED---GPPEMLEAAQEAIA--GG-VNQYPPGPGIPELRAAIAAQRR 75 (387)
T ss_pred hhhcCccHHHHHHHHHh---hCCeEEccCCCC-CCC---CCHHHHHHHHHHHh--cC-CCCCCCCCCCHHHHHHHHHHHH
Confidence 33344444544444442 357899999997 333 33444444444343 22 4679989999999999999976
Q ss_pred CCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC-CCCCcCHHH
Q 023599 101 GADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP-KTNGLDFQG 178 (280)
Q Consensus 101 ~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~ 178 (280)
...+...+++ +|++ |+|+++++.++ +.+++.+||+|+++.|+|..+...++..|++++.+++.+. .++.+|++.
T Consensus 76 ~~~g~~~~~~~~i~~--t~G~~~al~~~--~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 151 (387)
T PRK07777 76 RRYGLEYDPDTEVLV--TVGATEAIAAA--VLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDA 151 (387)
T ss_pred HHhCCCCCCCCcEEE--eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHH
Confidence 5555445555 7888 99999999998 7788889999999999999999999999999999998433 257799999
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
+++.+.++++ +++++|||||||.+++.+++++|+++|+++++++|+||+|.++.++.. ...++..+.+..+++|++
T Consensus 152 l~~~~~~~~~---~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~~~~i~~ 227 (387)
T PRK07777 152 LRAAVTPRTR---ALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA-RHLPLATLPGMRERTVTI 227 (387)
T ss_pred HHHhcCcccE---EEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC-CcccHhhCCCCcCcEEEE
Confidence 9998865433 778899999999999999999999999999999999999999998532 233444443335689999
Q ss_pred ecccccccccccccceEEEEc
Q 023599 259 QSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+||||.||+||+|+||++++.
T Consensus 228 ~S~SK~~g~~GlRiG~~~~~~ 248 (387)
T PRK07777 228 SSAAKTFNVTGWKIGWACGPA 248 (387)
T ss_pred eechhhccCcCceeEEEecCH
Confidence 999999999999999998753
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=279.89 Aligned_cols=213 Identities=18% Similarity=0.124 Sum_probs=176.6
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.++++|+.|+| ++. .+... +++.+.+. .. ..+|++..|.++||+++++++.+ +.+++|++ |+|+
T Consensus 25 ~~~~~~~~~~e~-~~~---~~~~~-~~~~~~~~--~~-~~~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~--t~G~ 89 (373)
T PRK07324 25 ESCIDSLTLEEL-LAL---AGKNP-EAFYQELG--QK-KLTYGWIEGSPEFKEAVASLYQN-----VKPENILQ--TNGA 89 (373)
T ss_pred cCCCCCCcHHHH-Hhc---cCcch-HHHHHHHh--cC-CccCCCCCCCHHHHHHHHHHhcC-----CChhhEEE--cCCh
Confidence 468999999997 443 33333 44444443 22 46899999999999999999743 34689988 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +.+++.+||+|+++.|+|..+...++..|++++.+++..+.++.+|++.+++.+.++++ ++++++|||
T Consensus 90 ~~al~~~--~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k---li~i~~p~N 164 (373)
T PRK07324 90 TGANFLV--LYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTK---LICINNANN 164 (373)
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCc---EEEEeCCCC
Confidence 9999999 77888999999999999999999999999999999984334577899999998866554 888999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|++||++||+||+|.++.++. ..+++ .+..+++|+++||||.||+||+|+||+++.
T Consensus 165 PtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~--~~~s~---~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~ 237 (373)
T PRK07324 165 PTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG--STPSI---ADLYEKGISTNSMSKTYSLPGIRVGWIAAN 237 (373)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCCCh---hhccCCEEEEecchhhcCCccceeEEEecC
Confidence 99999999999999999999999999999999998853 22222 233468999999999999999999999874
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=278.57 Aligned_cols=224 Identities=14% Similarity=0.146 Sum_probs=181.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.++++++|+.|.| + .+. .+.+.++..+... . ...+|.+..|.++||+++++++....+..+.+++|++ |+|
T Consensus 31 ~~~~~i~l~~g~p-~---~~~-~~~~~~~~~~~~~-~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~--t~G 101 (402)
T PRK06107 31 AGRSIVDLTVGEP-D---FDT-PDHIKQAAVAAIE-R-GETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITV--GGG 101 (402)
T ss_pred ccCCEEEcCCCCC-C---CCC-CHHHHHHHHHHHH-c-CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCC
Confidence 4568899999996 2 222 3445555444442 2 2467999999999999999998766566667899998 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++|+..+ +..++.+||+|++++|+|..|...+...|.+++.+++..++++.+|++.+++.+.+++ .+++++|||
T Consensus 102 ~~~al~~~--~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~---~~v~l~~p~ 176 (402)
T PRK06107 102 AKQAIFLA--LMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRT---RWLILNAPS 176 (402)
T ss_pred HHHHHHHH--HHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCc---eEEEEECCC
Confidence 99999999 7777889999999999999999999989998888888323457789999999886543 377888999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhC-CceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEecccccccccccccceEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLK-RLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
||||.+++.+++++|+++|+++ ++++|+||+|.++.++.. ..+++.++.. ..+++|+++||||+|++||+|+||+++
T Consensus 177 NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~ 255 (402)
T PRK06107 177 NPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDE-PTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAG 255 (402)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCC-CCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeec
Confidence 9999999999999999999998 999999999999988532 3334444422 346999999999999999999999986
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
+
T Consensus 256 ~ 256 (402)
T PRK06107 256 P 256 (402)
T ss_pred C
Confidence 5
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=277.77 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=179.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~ 118 (280)
.+.++++|+.|.| +. ..+...+++..+.+. .....+|.+..|.++||+++++|+...++..++++ ++++ |+
T Consensus 27 ~~~~~i~l~~g~p-~~---~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~--t~ 98 (395)
T PRK08175 27 RGEDIIDFSMGNP-DG---PTPPHIVEKLCEVAQ--RPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIV--TI 98 (395)
T ss_pred cCCCeEEcCCCCC-CC---CCCHHHHHHHHHHHh--CCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cc
Confidence 3568999999986 22 234445555555544 23357799999999999999999876655556666 7888 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +..++.+||+|++++|+|+.+...++..|++++.+++ ++++ .+.+.+++++.....+..++++++|
T Consensus 99 G~~~~l~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~~--~~~~~l~~~l~~~~~~~~~v~i~~p 173 (395)
T PRK08175 99 GSKEGLAHL--MLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL-VEGV--DFFNELERAIRESYPKPKMMILGFP 173 (395)
T ss_pred CcHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEec-ccCC--CcHHHHHHHHhhccCCceEEEEeCC
Confidence 999999999 6777899999999999999999999999999999998 4332 3478888887653223458888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|+++|++||+||+|.++.++.. ...++..+....+++|+++||||.||+||+|+||+++.
T Consensus 174 ~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~ 252 (395)
T PRK08175 174 SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW-KAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGN 252 (395)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC-CCcchhcCCCcccCEEEEeeccccccCcchhheeeeCC
Confidence 99999999999999999999999999999999999988532 22333443323467899999999999999999999864
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=277.22 Aligned_cols=223 Identities=15% Similarity=0.117 Sum_probs=181.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+.++|+|+.|.|... ..+ +++.+.++..+... .. ...|.+..|.++||+++++|+...++..+++++|++ |+|
T Consensus 28 ~~~~~i~l~~g~p~~~-~~~-p~~~~~~~~~~~~~-~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G 101 (398)
T PRK08363 28 KGIKVIRLNIGDPVKF-DFQ-PPEHMKEAYCRAIK-EG-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRV--TAA 101 (398)
T ss_pred cCCCeEEEeCCCCCcC-CCC-CCHHHHHHHHHHHH-cC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEE--eCC
Confidence 4568999999997211 222 34455555554442 12 346888999999999999998776666678899998 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEE-EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTY-HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v-~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
+++++.++ +.+++.+||+|++++|+|..+...++..|.+++.+ +. +++++.+|++.+++.+.+++ .+++++||
T Consensus 102 ~~~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~-~~~~~~~d~~~l~~~~~~~~---~~v~l~~p 175 (398)
T PRK08363 102 VTEALQLI--FGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTI-EEEGWQPDIDDIRKKITEKT---KAIAVINP 175 (398)
T ss_pred HHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccc-cccCCcCCHHHHHhhCCcce---EEEEEECC
Confidence 99999999 77778999999999999999999999999998888 44 55667789999999886543 37788899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
|||||.+++.+++++|+++|++++++||+||+|.++.++. ...++.++. ...++|+++||||.|++||+|+||+++
T Consensus 176 ~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~--~~~~~~~~~-~~~~vi~~~SfSK~~~~~GlRiG~~~~ 251 (398)
T PRK08363 176 NNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG--KHVSPGSLT-KDVPVIVMNGLSKVYFATGWRLGYIYF 251 (398)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC--cccCHHHcC-cCCcEEEEecchhccCCccceEEEEEE
Confidence 9999999999999999999999999999999999998853 223334442 345899999999999999999999997
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=276.53 Aligned_cols=221 Identities=15% Similarity=0.174 Sum_probs=179.3
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
++.|+|+.|++ ..+. ++.+.++..+... ....+|.+..|.++||+++++++....+..+++++|++ |+|++
T Consensus 33 ~~~i~l~~~~~----~~~~-~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~ 103 (391)
T PRK08361 33 ENVISLGIGEP----DFDT-PKNIKEAAKRALD--EGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIV--TAGAY 103 (391)
T ss_pred cCeEEcCCCCC----CCCC-CHHHHHHHHHHHh--cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEE--eCChH
Confidence 47899999995 2223 3445444444441 22456989999999999999998654444567799998 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+++..+.++.+|++.+++.+.++++ +++++|||||
T Consensus 104 ~al~~~--~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~---~v~i~~p~NP 178 (391)
T PRK08361 104 EATYLA--FESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTR---MIVINYPNNP 178 (391)
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccE---EEEEeCCCCC
Confidence 999999 77778999999999999999999999999999999983333578999999998876543 7788899999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||.+++.+++++|+++|++++++||+||+|.++.++.. ...++..+ ..+++++++||||+||+||+|+||++++.
T Consensus 179 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~--~~~~~i~~~s~SK~~~~~GlRiG~~~~~~ 253 (391)
T PRK08361 179 TGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA-KHYPMIKY--APDNTILANSFSKTFAMTGWRLGFVIAPE 253 (391)
T ss_pred CCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC-CCCCHhhc--CCCCEEEEecCchhcCCcHhhhhhhccCH
Confidence 99999999999999999999999999999999987532 22233332 23589999999999999999999998753
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=271.68 Aligned_cols=216 Identities=15% Similarity=0.080 Sum_probs=176.5
Q ss_pred eeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecccchh
Q 023599 44 KLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSGSG 122 (280)
Q Consensus 44 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~~~ 122 (280)
+++|+.|.| + .+. .+.+.++.++.. . ...+|.+..|.++||+++++|+...++..++++ +|++ |+|+++
T Consensus 2 ~~~~~~g~p-~---~~~-~~~~~~~~~~~~--~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iii--t~Gs~~ 71 (350)
T TIGR03537 2 LFDFGTGDP-K---EPT-PPFIRKALIDAV--P-EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP--SAGSKE 71 (350)
T ss_pred eEeccCCCC-C---CCC-CHHHHHHHHHHH--h-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--cCChHH
Confidence 578999985 2 223 344444444443 2 256799999999999999999977666666777 8998 999999
Q ss_pred HHHHHHHHHHhhcCC---CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 123 SLRIGADFLAKHYYQ---HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 123 al~~~~~~~~~~~~G---d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
++.++ +..++.+| |+|+++.|+|..|...++..|++++.+++..++++.+|++.+++++.++++ ++++++||
T Consensus 72 ai~~~--~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~---~i~i~~p~ 146 (350)
T TIGR03537 72 AIFHF--PLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETK---IVWINYPH 146 (350)
T ss_pred HHHHH--HHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccE---EEEEeCCC
Confidence 99999 77778877 699999999999999999999999999983244577899999998876544 78888999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|+++|+++|++||+||+|.++.++. ...++... ..+++|+++||||+||+||+|+||+++.
T Consensus 147 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~--~~~~~i~~~s~SK~~g~~GlRiG~~~~~ 221 (350)
T TIGR03537 147 NPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE--PPHSALEV--GIENVLAFHSLSKRSGMTGYRSGFVAGD 221 (350)
T ss_pred CCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC--CCCchhhc--CcCCEEEEeecccccCCccccceeeecC
Confidence 999999999999999999999999999999999987752 22222322 2368999999999999999999999864
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=278.82 Aligned_cols=226 Identities=15% Similarity=0.177 Sum_probs=177.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhc----------cCCCCCCCCCCCCCHHHHHHHHHHHhCCCC--ccccC
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN----------DLSADKEYLPITGLPEFNKLSAKLIFGADS--PAIKE 109 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~--~~~~~ 109 (280)
..+|+|+..+ |. ...+.+....+.... .......|.+..|.+.||+++|+++....+ .++++
T Consensus 47 ~g~i~l~~ae----N~--l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p 120 (447)
T PLN02607 47 SGVIQMGLAE----NQ--VSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDP 120 (447)
T ss_pred CceEEEechh----hh--hhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCH
Confidence 3599999988 53 233333333222110 011224488889999999999999976543 35788
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCCeeeEEEeecCCCCCcCHHHHHHHHhcC--
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-- 186 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-- 186 (280)
++|++ |+|++++++++ +..++.|||.|+++.|+|+.|...+. ..|++++++++...+++.+|++.+++++.+.
T Consensus 121 ~~Ivi--t~G~t~al~~l--~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~ 196 (447)
T PLN02607 121 DRIVL--TAGATAANELL--TFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEA 196 (447)
T ss_pred HHeEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHH
Confidence 99998 99999999999 77778999999999999999988877 5799999999833345789999999988641
Q ss_pred -CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh------cCCeEEEEe
Q 023599 187 -PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA------DGGECLVAQ 259 (280)
Q Consensus 187 -~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~------~~~~~i~~~ 259 (280)
..+.++++++|||||||.+++++++++|+++|++|+++||+||+|.++.|+. .+..++.++.. ..+++++++
T Consensus 197 ~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~-~~f~S~~s~~~~~~~~~~~~~v~vi~ 275 (447)
T PLN02607 197 ANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA-SEFVSVAEIVEARGYKGVAERVHIVY 275 (447)
T ss_pred hCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC-CCcccHHHHHhhcCCCCCcCcEEEEE
Confidence 2234578889999999999999999999999999999999999999998853 23444444422 146899999
Q ss_pred cccccccccccccceEEEE
Q 023599 260 SYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.||++|+|+||++..
T Consensus 276 s~SK~fg~~GlRvG~ivs~ 294 (447)
T PLN02607 276 SLSKDLGLPGFRVGTIYSY 294 (447)
T ss_pred cchhcCCCCcceEEEEEEc
Confidence 9999999999999999873
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=273.19 Aligned_cols=221 Identities=17% Similarity=0.168 Sum_probs=177.6
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.++++|+.|.+ + .+.+ +.+.++.++.. . ...+|.+..|.++||+++++++. .++..+++++|++ |+|+
T Consensus 29 ~~~~i~l~~~~~-~---~~~~-~~~~~a~~~~~--~-~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~--t~G~ 97 (397)
T PRK07568 29 GIKVYHLNIGQP-D---IKTP-EVFFEAIKNYD--E-EVLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILI--TNGG 97 (397)
T ss_pred CCCEEEecCCCC-C---CCCC-HHHHHHHHHHh--c-CCcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEE--cCCh
Confidence 357899999995 2 2233 44444444433 2 24679999999999999999987 3444567789988 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCC-cCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNG-LDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~-~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
++++.++ +..++.+||+|++++|+|..+...++..|++++.+++..++++. .+++.+++++.++++ ++++++||
T Consensus 98 ~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~---~v~i~~p~ 172 (397)
T PRK07568 98 SEAILFA--MMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTK---AILISNPG 172 (397)
T ss_pred HHHHHHH--HHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccce---EEEEECCC
Confidence 9999999 66778899999999999999999999999999999983233333 367899988865543 78889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|+++|++++++||+||+|.+|.++. ....++.++.+..+++|+++||||+|++||+|+||+++.
T Consensus 173 NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~ 250 (397)
T PRK07568 173 NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDG-LKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISK 250 (397)
T ss_pred CCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCC-CCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecC
Confidence 999999999999999999999999999999999998853 233344554333579999999999999999999999874
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=273.43 Aligned_cols=248 Identities=16% Similarity=0.177 Sum_probs=193.1
Q ss_pred ccccccccccCCChHHHHH---HHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHH
Q 023599 15 DSAFEQVARAADIPIYAVM---AAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEF 91 (280)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~l 91 (280)
|.+.+++...++..+.+.. +++. ...++.++|+.|++ + .+.+ +.+.++..+... .. ..+|.+..|.+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~---~~~~-~~~~~~~~~~~~-~~-~~~Y~~~~g~~~l 73 (393)
T PRK05764 2 MKLSKRVSRVTPSATLAVTAKAKELK-AQGRDVISLGAGEP-D---FDTP-EHIKEAAIEALD-DG-KTKYTPAAGIPEL 73 (393)
T ss_pred cchhhhhhhcCchHHHHHHHHHHHHH-hccCCEEEeCCCCC-C---CCCC-HHHHHHHHHHHh-cC-CCCcCCCCChHHH
Confidence 3455566666666654433 3332 23468899999996 2 2233 445444444331 22 4569999999999
Q ss_pred HHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCC
Q 023599 92 NKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKT 171 (280)
Q Consensus 92 r~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~ 171 (280)
|+++++++...++..+.+++|++ |+|+++++.++ +.+++.+||+|++++|+|..+...++..|++++.+++..+++
T Consensus 74 r~~ia~~~~~~~~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 149 (393)
T PRK05764 74 REAIAAKLKRDNGLDYDPSQVIV--TTGAKQALYNA--FMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENG 149 (393)
T ss_pred HHHHHHHHHHHhCCCCCHHHEEE--eCCcHHHHHHH--HHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccC
Confidence 99999998665544466789988 99999999999 777789999999999999999999999999999999832345
Q ss_pred CCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh-hh
Q 023599 172 NGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF-VA 250 (280)
Q Consensus 172 ~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~ 250 (280)
+.+|++.+++++.++++ ++++++||||||.+++.+++++|+++|++|++++|+||+|.++.++.. ...++.++ .+
T Consensus 150 ~~~d~~~l~~~l~~~~~---~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~ 225 (393)
T PRK05764 150 FKLTVEQLEAAITPKTK---ALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGA-EFTSIASLSPE 225 (393)
T ss_pred CcCCHHHHHHhhCccce---EEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCC-CcccHHHcCCC
Confidence 78999999998865433 778899999999999999999999999999999999999999988532 22334444 23
Q ss_pred cCCeEEEEecccccccccccccceEEEE
Q 023599 251 DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 251 ~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
...++++++||||.|+++|+|+||++..
T Consensus 226 ~~~~~i~~~s~SK~~~~~G~RiG~i~~~ 253 (393)
T PRK05764 226 LRDRTITVNGFSKAYAMTGWRLGYAAGP 253 (393)
T ss_pred CcCCEEEEecCcccccCccceeEEEecC
Confidence 4568999999999999999999999864
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=272.84 Aligned_cols=217 Identities=19% Similarity=0.211 Sum_probs=170.9
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCC-CCCCCCCCCCCHHHHHHHHHHHhCCC--CccccCCCeEEeecc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS-ADKEYLPITGLPEFNKLSAKLIFGAD--SPAIKENRVSTVQCL 118 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~G~~~lr~~ia~~l~~~~--~~~~~~~~i~~v~t~ 118 (280)
+..++|+.|++ +.++++...+...+.+. .. ....| +..|.++||+++++|+...+ +..+++++|++ |+
T Consensus 28 ~~~~~l~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~i--t~ 98 (374)
T PRK02610 28 IQLDRLDTNEF----PYDLPPDLKQKLAWLYQ--QGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISV--GN 98 (374)
T ss_pred cceeEecCCCC----CCCCCHHHHHHHHHHHh--hcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEE--cC
Confidence 35899999994 34455555555444433 22 12456 45799999999999987654 34567899998 99
Q ss_pred cchhHHHHHHHHHHhhcCCC-EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC-CCCcEEEEec
Q 023599 119 SGSGSLRIGADFLAKHYYQH-TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-PSGAIVLLQA 196 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd-~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~~v~~~ 196 (280)
|+++++.++ +.+++.+|| +|++++|+|..|...++..|++++.+++ +++++++|++.+++++.+. ..+..+++++
T Consensus 99 Ga~~al~~~--~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~ 175 (374)
T PRK02610 99 GSDELIRSL--LIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR-DPETFEIDLAAAQSAIEQTQNPPVRVVFVV 175 (374)
T ss_pred ChHHHHHHH--HHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC-CcccCCCCHHHHHHHHHhhcCCCceEEEEe
Confidence 999999988 667777886 8999999999999999999999999998 5556899999999988641 1123488888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
|||||||.+++.+++++++++| ++++||+||+|.+|.+. . .+..+ ....++|+++||||+||+||+|+||++
T Consensus 176 ~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~---~--~~~~~-~~~~~~ivi~SfSK~~g~~GlRiG~~v 247 (374)
T PRK02610 176 HPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQT---T--LVGEL-AQHPNWVILRTFSKAFRLAAHRVGYAI 247 (374)
T ss_pred CCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCcc---c--hHHHH-hcCCCEEEEEecchhccCcccceeeee
Confidence 9999999999999999999876 49999999999998642 1 12233 234588999999999999999999998
Q ss_pred EE
Q 023599 277 VV 278 (280)
Q Consensus 277 ~~ 278 (280)
++
T Consensus 248 ~~ 249 (374)
T PRK02610 248 GH 249 (374)
T ss_pred cC
Confidence 75
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=259.09 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=191.0
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.++++|++.+ ||+. .+++.+++..+++. .+ .++|+ .+..++-+++++|...++...+.++.|++ ++|.
T Consensus 24 ~~DvlPmWVAD-MDf~---~pp~i~~Al~~rvd--hG-vfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~--~p~V 92 (388)
T COG1168 24 NEDVLPMWVAD-MDFP---TPPEIIEALRERVD--HG-VFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVF--VPGV 92 (388)
T ss_pred CCCcceeeeec-ccCC---CCHHHHHHHHHHHh--cC-CCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEE--cCcc
Confidence 36899999999 4776 55555555555655 44 46665 68889999999999999999889999888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC-CCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK-TNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
..++.++ +..+.++||.|++..|.|+++.......|.++.+.|+..++ .+.+|++.|++++.+.. .+++++||||
T Consensus 93 Vpgi~~~--I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~--vkl~iLCnPH 168 (388)
T COG1168 93 VPGISLA--IRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER--VKLFILCNPH 168 (388)
T ss_pred hHhHHHH--HHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC--ccEEEEeCCC
Confidence 9999999 88889999999999999999999999999999999995333 37789999999998763 2499999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|.++|++||+.||+||+++++++.+. .+.++.++.+ ..+++|++.|.||+|+++|++++++|+.
T Consensus 169 NP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~ 247 (388)
T COG1168 169 NPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIIS 247 (388)
T ss_pred CCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhhhcceEEEeeccccccchhhhheeEEec
Confidence 9999999999999999999999999999999999999643 4444444422 3569999999999999999999999987
Q ss_pred c
Q 023599 279 R 279 (280)
Q Consensus 279 ~ 279 (280)
+
T Consensus 248 n 248 (388)
T COG1168 248 N 248 (388)
T ss_pred C
Confidence 5
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=274.79 Aligned_cols=229 Identities=20% Similarity=0.230 Sum_probs=185.5
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHH-HHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecccc
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQ-LLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSG 120 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~ 120 (280)
++|+|+.|.+......+.+...++++.+ ... ......|++..|.++||+++++++.+.++...+++ +|++ ++|+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~--~~G~ 77 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAAT--SSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILV--TSGA 77 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHH--HTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEE--ESHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhc--ccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEE--eccc
Confidence 6899999997443334445556666554 222 34467899999999999999999985666666777 8887 9998
Q ss_pred hhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC-C--CcEEEEec
Q 023599 121 SGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP-S--GAIVLLQA 196 (280)
Q Consensus 121 ~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~--~~~~v~~~ 196 (280)
.+++.++ +..+ ..+||+|++++|+|+.|...++..|++++.+++..++++.+|++.|++.+++.. + +..+++++
T Consensus 78 ~~~~~~~--~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 155 (363)
T PF00155_consen 78 QAALFLL--LRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLIC 155 (363)
T ss_dssp HHHHHHH--HHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEE
T ss_pred ccchhhh--hhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeec
Confidence 8888888 5555 669999999999999999999999999999998556678999999999998741 1 24588899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
+||||||.+++.+++++|+++|++++++||+||+|.++.++. .+..+.....+...++|+++||||+||++|+|+||++
T Consensus 156 ~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~ 234 (363)
T PF00155_consen 156 NPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGD-PDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIV 234 (363)
T ss_dssp SSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSS-SHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEE
T ss_pred ccccccccccccccccchhhhhcccccceeeeeceeccccCC-CccCcccccccccccceeeeecccccccccccccccc
Confidence 999999999999999999999999999999999999999963 2333333334455579999999999999999999999
Q ss_pred EE
Q 023599 277 VV 278 (280)
Q Consensus 277 ~~ 278 (280)
+.
T Consensus 235 ~~ 236 (363)
T PF00155_consen 235 AP 236 (363)
T ss_dssp EE
T ss_pred ch
Confidence 85
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=274.42 Aligned_cols=210 Identities=15% Similarity=0.115 Sum_probs=169.9
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
..++|+|+.|+ +..++++..++...+.+. . ..|+|..|.++||+++++++. +++++|++ |+|+
T Consensus 28 ~~~~i~l~~ne----n~~~~~~~v~~a~~~~~~--~---~~~Yp~~g~~~Lr~aia~~~~------~~~~~I~v--t~Gs 90 (366)
T PRK01533 28 DHSFVKLASNE----NPFGCSPRVLDELQKSWL--D---HALYPDGGATTLRQTIANKLH------VKMEQVLC--GSGL 90 (366)
T ss_pred CCceEEeCCCC----CCCCCCHHHHHHHHHHHH--h---cCcCCCCCHHHHHHHHHHHhC------CCcceEEE--CCCH
Confidence 45789999999 444455555555444433 1 235577899999999999972 35689998 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +..++.+||+|++++|+|..|...++..|++++.+++ + ++++|++.+++++.++++ +++++||||
T Consensus 91 ~e~i~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~-~--~~~~d~~~l~~~~~~~~~---~v~i~~P~N 162 (366)
T PRK01533 91 DEVIQII--SRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVAL-N--NGVYDLDEISSVVDNDTK---IVWICNPNN 162 (366)
T ss_pred HHHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeec-C--CCCcCHHHHHHHhCcCCc---EEEEeCCCC
Confidence 9999999 7777899999999999999999999999999999998 3 346999999998866544 788899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|++++ ++|+||+|.+|.++.. ..+.....+..+++|+++||||.||+||+|+||+++.
T Consensus 163 PTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~--~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~ 237 (366)
T PRK01533 163 PTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD--FPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH 237 (366)
T ss_pred CCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc--CcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC
Confidence 9999999999999999998876 5677999999887421 1122223344579999999999999999999999864
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=273.98 Aligned_cols=219 Identities=19% Similarity=0.186 Sum_probs=164.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhcc--CCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND--LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+.+.++|+.|++ ..++++...+...+.+... .....+|.|..|.++||+++|+++.+.+ +++++|++ |
T Consensus 31 ~~~~~i~l~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~---~~~d~I~i--t 101 (402)
T TIGR03542 31 PSADIIRLGIGDT----TQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGR---IDPEEIFI--S 101 (402)
T ss_pred CCCCeEEcCCCCC----CCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcC---CCHHHEEE--C
Confidence 3568999999985 2223333333322222210 1123569899999999999999875433 56799998 9
Q ss_pred ccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCC-----------eeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 118 LSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGL-----------AMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~-----------~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
+|+++++.++ + .++.+||+|++++|+|..|...++..|+ +++++++..++++..|++. .+
T Consensus 102 ~Ga~~al~~l--~-~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~- 172 (402)
T TIGR03542 102 DGAKCDVFRL--Q-SLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EP- 172 (402)
T ss_pred CCcHHHHHHH--H-HhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc-----cC-
Confidence 9999999876 3 4467999999999999999999999999 9999988323334444321 12
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
+..+++++|||||||.+++.+++++|+++|++++++||+||+|.+|.++.. ...++..+....+++|+++||||.||
T Consensus 173 --~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~g 249 (402)
T TIGR03542 173 --KIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPS-LPHSIFEIPGAKECAIEFRSFSKTAG 249 (402)
T ss_pred --CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCC-CCcchhhCCCCcccEEEEecCccccC
Confidence 234777789999999999999999999999999999999999999988532 12233444323458999999999999
Q ss_pred ccccccceEEEEc
Q 023599 267 LYGERVGALSVVR 279 (280)
Q Consensus 267 ~~G~RvG~~v~~~ 279 (280)
+||+|+||++++.
T Consensus 250 ~pGlRiG~~i~~~ 262 (402)
T TIGR03542 250 FTGVRLGWTVVPK 262 (402)
T ss_pred CCCcceEEEEecH
Confidence 9999999999864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=270.07 Aligned_cols=222 Identities=18% Similarity=0.240 Sum_probs=182.2
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccC-CCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-SADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
..++++|+.|.| .. .+++.+.++.....+.. ....+|.+..|.+.||+++++++...+...+++++|++ |+|
T Consensus 32 ~~~~~~l~~g~p----~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~--t~G 104 (394)
T PRK06836 32 ADNVFDFSLGNP----SV-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVM--TCG 104 (394)
T ss_pred CCCeEEecCcCC----CC-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEE--eCC
Confidence 356899999974 22 23455655555544221 22467989999999999999998766555667899998 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++..+ +..++.+||.|++++|+|..+...++..|++++.+++ +++++++|++.+++++.++++ ++++++||
T Consensus 105 ~~~al~~~--~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~~~l~~~~~~~~~---~v~~~~p~ 178 (394)
T PRK06836 105 AAGALNVA--LKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT-DTDTFQPDLDALEAAITPKTK---AVIINSPN 178 (394)
T ss_pred hHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec-CCccCcCCHHHHHhhcCcCce---EEEEeCCC
Confidence 99999999 7777899999999999999999999999999999998 555678999999999966543 77888999
Q ss_pred CCCCCCCCHHHHHHHHHHHHh------CCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccc
Q 023599 200 NPTGIDPTAQQWEQIRQLMRL------KRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVG 273 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~------~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG 273 (280)
||||.+++.+++++|+++|++ |+++||+||+|.++.++.. ...++ ....+++++++||||+|++||+|+|
T Consensus 179 NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~---~~~~~~~i~~~S~SK~~~~pGlRiG 254 (394)
T PRK06836 179 NPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA-EVPYI---FKYYDNSIVVYSFSKSLSLPGERIG 254 (394)
T ss_pred CCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC-CCCCh---HHccCcEEEEecchhhccCcceeeE
Confidence 999999999999999999999 8999999999999988532 22222 2234689999999999999999999
Q ss_pred eEEEEc
Q 023599 274 ALSVVR 279 (280)
Q Consensus 274 ~~v~~~ 279 (280)
|+++..
T Consensus 255 ~~~~~~ 260 (394)
T PRK06836 255 YIAVNP 260 (394)
T ss_pred EEecCH
Confidence 998753
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=279.71 Aligned_cols=214 Identities=12% Similarity=0.053 Sum_probs=165.9
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCC-Ccc-cc--CCCeEEeecc
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGAD-SPA-IK--ENRVSTVQCL 118 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~-~~~-~~--~~~i~~v~t~ 118 (280)
++|+|+.|+| +.+ .+. .+.++.+.+. . .+|+++.|.++||+++++++..+. ... .. +++|++ |+
T Consensus 101 ~~i~l~~g~p-~~~---~~~-~v~e~~~~~~--~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~v--T~ 168 (527)
T PRK09275 101 DAVSYVRDQL-GFD---ADE-FVYELVDGII--G---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFA--VE 168 (527)
T ss_pred HHHhhcCCCC-CCC---CCH-HHHHHHHHHh--c---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eC
Confidence 5799999996 443 433 3333555554 2 259999999999999999654432 111 12 348887 99
Q ss_pred cchhHHHHHHHHHH-----hhcCCCEEEEeCCCCCChHHHHHHcCC--eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcE
Q 023599 119 SGSGSLRIGADFLA-----KHYYQHTVYLSQPTYGNHPNFFAAAGL--AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAI 191 (280)
Q Consensus 119 g~~~al~~~~~~~~-----~~~~Gd~Vli~~P~y~~~~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 191 (280)
|+++|+..+ +.+ ++.|||+|++++|+|+.|...++..|+ +++.++...+++|.+|.+.+++++.++++
T Consensus 169 Ga~~al~~~--~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tk--- 243 (527)
T PRK09275 169 GGTAAMCYI--FDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIK--- 243 (527)
T ss_pred CHHHHHHHH--HHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCC---
Confidence 999999999 554 678999999999999999999887754 55555552234588999999998766555
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHh--CCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRL--KRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 269 (280)
+++++|||||||.+++.+++++|+++|++ ++++||+||+|.+|.++ ..++... ..+++|+++||||+|+++|
T Consensus 244 ai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~----~~s~~~~--~~~~~I~v~SfSK~f~mtG 317 (527)
T PRK09275 244 ALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD----FRSLFAV--LPYNTILVYSFSKYFGATG 317 (527)
T ss_pred EEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc----ccCHHHh--CCCCEEEEeehhhhccCcH
Confidence 88888999999999999999999999964 59999999999998763 1222222 3469999999999999999
Q ss_pred cccceEEEEc
Q 023599 270 ERVGALSVVR 279 (280)
Q Consensus 270 ~RvG~~v~~~ 279 (280)
||+||+++..
T Consensus 318 ~RlG~i~~~~ 327 (527)
T PRK09275 318 WRLGVIALHE 327 (527)
T ss_pred hHHhhhhcCc
Confidence 9999998754
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=266.30 Aligned_cols=224 Identities=12% Similarity=0.108 Sum_probs=169.1
Q ss_pred ChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 023599 27 IPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA 106 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~ 106 (280)
..+.+..++... ...++++|+.|++ ....+...++...+.+. ...+|++ .+.++||+++++|+.
T Consensus 5 ~~~~~~~~~~~~-~~~~~~~l~~~~~----~~~~p~~~~~a~~~~~~----~~~~Y~~-~~~~~lr~~ia~~~~------ 68 (354)
T PRK06358 5 GNINEIAREKGL-TKNMILDFSANIN----PLGVPESLKQAITENLD----KLVEYPD-PDYLELRKRIASFEQ------ 68 (354)
T ss_pred ccHHHHHHHhCC-CccceEEecCCCC----CCCCCHHHHHHHHHHHH----hhhcCCC-ccHHHHHHHHHHHhC------
Confidence 344455555432 3346899999883 33334444443333322 1345654 578999999999972
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
+++++|++ |+|+++++.++ +..+ .+ +.|++++|+|+.|...++..|++++.+++..+.++.+| +.+++.+.++
T Consensus 69 ~~~~~i~i--t~Ga~~~l~~~--~~~~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~ 141 (354)
T PRK06358 69 LDLENVIL--GNGATELIFNI--VKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEE 141 (354)
T ss_pred CChhhEEE--CCCHHHHHHHH--HHHh-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccC
Confidence 45799998 99999999998 5543 44 68999999999999999999999999998323457888 6666666444
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
++ +++++|||||||.+++.+++++|+++|++++++||+||+|.+|.++.. . .+.....+..+++|+++||||+||
T Consensus 142 ~~---~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~-~~~~~~~~~~~~vi~~~S~SK~~g 216 (354)
T PRK06358 142 ID---LVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE-T-ISMINYLENFKNLIIIRAFTKFFA 216 (354)
T ss_pred CC---EEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc-c-hhHHHhccCCCCEEEEEechhhcc
Confidence 33 777889999999999999999999999999999999999999998632 2 222223344579999999999999
Q ss_pred ccccccceEEEE
Q 023599 267 LYGERVGALSVV 278 (280)
Q Consensus 267 ~~G~RvG~~v~~ 278 (280)
+||+|+||++++
T Consensus 217 l~G~RiG~lv~~ 228 (354)
T PRK06358 217 IPGLRLGYGLTS 228 (354)
T ss_pred CcchhheeeecC
Confidence 999999999874
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=264.93 Aligned_cols=223 Identities=18% Similarity=0.133 Sum_probs=172.1
Q ss_pred ChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 023599 27 IPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA 106 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~ 106 (280)
..+.+.++++.. ...++|+|+.|+. ...+++...++..+.+. . ..+|+ ..|.+.||+++++++.
T Consensus 16 ~~~~~~~~~~~~-~~~~~i~l~~~~~----~~~~~~~~~~~~~~~~~---~-~~~Y~-~~~~~~lr~~ia~~~~------ 79 (357)
T PRK14809 16 RGIEEVARELGL-DPDDLVKLSSNEN----PHGPSPAAVEAIREAAE---R-VHSYP-KASHADLTAALADRWD------ 79 (357)
T ss_pred CCHHHHHHHhCC-CccceeEecCCCC----CCCCCHHHHHHHHHHHh---h-hhcCC-CCCHHHHHHHHHHHhC------
Confidence 345556666533 3457999999984 33344444444433332 1 34575 5789999999999972
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
+++++|++ |+|+++++.++ +.+++.+||+|++++|+|..|....+..|++++.+++..++++.++.+.+++... +
T Consensus 80 ~~~~~I~i--t~G~~~al~~~--~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~ 154 (357)
T PRK14809 80 VSPEQVWL--ANGGDGALDYL--ARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD-G 154 (357)
T ss_pred CCcceEEE--CCCHHHHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc-C
Confidence 45689988 99999999999 7777899999999999999898888889999999998333457778887777542 2
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
++ +++++|||||||.+++.+++++|+++|++ +++||+||+|.+|.++. . .+. ..+..+++|+++||||+||
T Consensus 155 ~k---~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~--~--~~~-~~~~~~~vi~~~SfSK~~~ 225 (357)
T PRK14809 155 ER---IVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP--S--AVA-LVEERDDVAVLRTFSKAYG 225 (357)
T ss_pred Cc---EEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc--h--hHH-HHhhCCCEEEEecchhHhc
Confidence 33 77788999999999999999999999975 78999999999998742 1 122 2234569999999999999
Q ss_pred ccccccceEEEEc
Q 023599 267 LYGERVGALSVVR 279 (280)
Q Consensus 267 ~~G~RvG~~v~~~ 279 (280)
+||+|+||++++.
T Consensus 226 ~~GlRiG~~~~~~ 238 (357)
T PRK14809 226 LAGLRLGYAVVPE 238 (357)
T ss_pred CcchhheeeecCH
Confidence 9999999999763
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=266.56 Aligned_cols=217 Identities=16% Similarity=0.122 Sum_probs=171.5
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
..++|+.|++ ..++++..++...+.+.........| +..|.+.||+++++|+...++..+++++|++ |+|+++
T Consensus 27 ~~i~l~~~~~----~~~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~i--t~G~~~ 99 (368)
T PRK03317 27 VPVRLNTNEN----PYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWA--ANGSNE 99 (368)
T ss_pred ceeEecCCCC----CCCCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEE--CCCHHH
Confidence 5699999984 33344444444333333111223456 5568999999999999877666678899998 999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCC
Q 023599 123 SLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPT 202 (280)
Q Consensus 123 al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPT 202 (280)
++.++ +.+++.+||.|+++.|+|..|...++..|.+++.++. .+++++|++.+++++.+.. ..+++++||||||
T Consensus 100 ~l~~~--~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~~~~~~--~~~i~l~~p~NPt 173 (368)
T PRK03317 100 ILQQL--LQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR--AADFTLDVDAAVAAIAEHR--PDVVFLTSPNNPT 173 (368)
T ss_pred HHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc--CCCCCCCHHHHHHHHhccC--CCEEEEeCCCCCC
Confidence 99999 7788899999999999999999999999999888886 3457899999999987532 2267788999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 203 GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 203 G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|.+++.+++++|+++| +++||+||+|.+|.++.. .+...+.+..+++|+++||||.||++|+|+||+++.
T Consensus 174 G~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~---~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~ 243 (368)
T PRK03317 174 GTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT---PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAA 243 (368)
T ss_pred CCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC---cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCC
Confidence 9999999999988877 689999999999976532 122333344458999999999999999999999865
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=272.83 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=167.6
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
...++|+.|.| +.+ .+ +.+.++..+.. .. ...|++..|.++||+++++|+..... .+++|++ |+|++
T Consensus 85 ~~~i~L~~g~p-~~~---~~-p~~~~~~~~~~--~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iii--t~G~~ 151 (431)
T PRK15481 85 TPLHDLAGGNP-DPQ---RL-PDLSRYFARLS--RT-PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDL--TSGAI 151 (431)
T ss_pred chhhhhhcCCC-Chh---Hh-HHHHHHHHHhh--hh-hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEE--ecCcH
Confidence 35789999985 222 22 23444444433 11 35699999999999999999754322 2468888 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++.++ +.+++.+||.|++++|+|..|...++..|++++.+++ +++ ++|++.+++++.++++ ++++++|||||
T Consensus 152 ~al~~~--~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~~~--g~~~~~l~~~~~~~~k--~i~~~p~p~NP 224 (431)
T PRK15481 152 DAIERL--LCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSV-DAE--GMQPEKLERALAQGAR--AVILTPRAHNP 224 (431)
T ss_pred HHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeecc-CCC--CCCHHHHHHHHhcCCC--EEEECCCCCCC
Confidence 999999 7788899999999999999999999999999999998 443 5899999999876433 34444599999
Q ss_pred CCCCCCHHHHHHHHHHHHhC-CceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLK-RLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.+++++|+++|+++ +++||+||+|.+|.++.. . +. +....+++|+++||||+|+ ||+|+||++++
T Consensus 225 TG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~-~~--~~~~~~~vi~~~SfSK~~~-~GlRiG~~i~~ 296 (431)
T PRK15481 225 TGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--H-SV--IPQTTQRWALIRSVSKALG-PDLRLAFVASD 296 (431)
T ss_pred CCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--C-CC--CcCCCCCEEEEeeeccccC-CCceeEEEeCC
Confidence 99999999999999999999 999999999999987421 1 11 1112359999999999999 99999999875
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=247.48 Aligned_cols=263 Identities=62% Similarity=1.045 Sum_probs=247.9
Q ss_pred ccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHH
Q 023599 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94 (280)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ 94 (280)
.++|++++.+|+++|+.+...++.+.++..|||++|.+.|.++.|.+.+.+++|.+++.. .....+|.|..|+++|.+.
T Consensus 25 ~s~~s~V~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~-~~ldKEYlpI~Gl~eF~k~ 103 (427)
T KOG1411|consen 25 SSWWSHVEMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLAS-LSLDKEYLPITGLAEFNKL 103 (427)
T ss_pred cchhhcCCCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhh-hcccchhccccchHHHHHH
Confidence 369999999999999999999999999999999999999999999999999999999885 5567789999999999999
Q ss_pred HHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCc
Q 023599 95 SAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGL 174 (280)
Q Consensus 95 ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 174 (280)
.+++.++.++..+...+|..++|.+||+|+.+.+.|++..-++..|.+|+|+|.++..++...|..+.++..+++.+.++
T Consensus 104 sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gl 183 (427)
T KOG1411|consen 104 SAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGL 183 (427)
T ss_pred HHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeecccccccc
Confidence 99999999999899999999999999999999999999989999999999999999999999999999999988999999
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc-CcCCChhHHHHhhhcCC
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~ 253 (280)
|++.+.+.+.+.+....++++...|||||+-.+.+++++|.++.++.+.+-+.|-+|+.|.. +...++.+++.+.+.+.
T Consensus 184 d~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~ 263 (427)
T KOG1411|consen 184 DFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGH 263 (427)
T ss_pred chHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCC
Confidence 99999999998888888999999999999999999999999999999999999999999988 55678889999988888
Q ss_pred eEEEEecccccccccccccceEEEE
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++...||.|..|+.|.|+|.+.+.
T Consensus 264 ~~~laQSyAKNMGLYgERvGa~svv 288 (427)
T KOG1411|consen 264 EILLAQSYAKNMGLYGERVGALSVV 288 (427)
T ss_pred ceEeehhhhhhcchhhhccceeEEE
Confidence 9999999999999999999998654
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=263.60 Aligned_cols=234 Identities=13% Similarity=0.046 Sum_probs=175.4
Q ss_pred ccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHH
Q 023599 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94 (280)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ 94 (280)
|.+.++++..+...+......... ...++++|+.|.| +. +. .+.+.++..... . ..+|.+..|.++||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~p-~~---~~-~~~~~~~~~~~~--~--~~~Y~~~~G~~~lr~~ 70 (364)
T PRK07865 1 MPVSARLPDFPWDTLAPAKATAAA-HPDGIVDLSVGTP-VD---PV-PPVIQEALAAAA--D--APGYPTTAGTPELREA 70 (364)
T ss_pred CCccccCCCccHHHHHHHHHHHHh-cCCCEEEcCCCCC-CC---CC-CHHHHHHHHHHH--h--hCCCCCccCCHHHHHH
Confidence 445566776666666555444433 3457899999986 22 22 344544444433 1 2479989999999999
Q ss_pred HHHHHhCCCCcc-ccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCC
Q 023599 95 SAKLIFGADSPA-IKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTN 172 (280)
Q Consensus 95 ia~~l~~~~~~~-~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~ 172 (280)
+++|+...++.. +++++|++ |+|+++++.++ +..+ +.+||+|++++|+|..|...++..|++++.++.
T Consensus 71 ia~~l~~~~~~~~~~~~~I~i--t~G~~~~i~~~--~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~------ 140 (364)
T PRK07865 71 IVGWLARRRGVTGLDPAAVLP--VIGSKELVAWL--PTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS------ 140 (364)
T ss_pred HHHHHHHHcCCCCCCcccEEE--ccChHHHHHHH--HHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC------
Confidence 999997765554 67899998 99999999988 5555 689999999999999999999999998887752
Q ss_pred CcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh--hh
Q 023599 173 GLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF--VA 250 (280)
Q Consensus 173 ~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~ 250 (280)
++.++. + +..+++++|||||||.+++.+++++|+++|++++++||+||+|.++.++. .....+... ..
T Consensus 141 ---~~~l~~---~---~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~ 210 (364)
T PRK07865 141 ---LTELGP---Q---RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDA-EPVSILDPRVCGG 210 (364)
T ss_pred ---hhhCCc---c---cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCC-CCCccccccccCC
Confidence 122211 2 23477788999999999999999999999999999999999999998853 111111110 01
Q ss_pred cCCeEEEEecccccccccccccceEEEE
Q 023599 251 DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 251 ~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+++|+++||||.|++||+|+||++.+
T Consensus 211 ~~~~~i~~~S~SK~~~~~GlRiG~i~~~ 238 (364)
T PRK07865 211 DHTGLLAVHSLSKQSNLAGYRAGFVAGD 238 (364)
T ss_pred ccceEEEEeechhccCCCceeeEEEecC
Confidence 2358999999999999999999999864
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=271.83 Aligned_cols=213 Identities=11% Similarity=0.045 Sum_probs=164.1
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHH-HHhCCCCcc-ccCC--CeEEeecc
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAK-LIFGADSPA-IKEN--RVSTVQCL 118 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~-~l~~~~~~~-~~~~--~i~~v~t~ 118 (280)
++|+|+.|+| +.+ +.+.+.++.+.+. . .+|+++.|...+++++++ |+....... ..++ +|++ |.
T Consensus 95 ~~i~l~~g~p----~~~-~~~~~~~~~~~~~--~---~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~i--t~ 162 (521)
T TIGR03801 95 DIISYVIDQL----GFD-PDAFLYEMCDGII--G---DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFA--VE 162 (521)
T ss_pred HHHhhcCCCC----CCC-CCHHHHHHHHHhh--c---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEE--eC
Confidence 5799999996 333 3455555555543 1 258777788888888885 444332221 2333 7887 99
Q ss_pred cchhHHHHHHHHHH-----hhcCCCEEEEeCCCCCChHHHHHHc--CCeeeEEEeecCCC-----CCcCHHHHHHHHhcC
Q 023599 119 SGSGSLRIGADFLA-----KHYYQHTVYLSQPTYGNHPNFFAAA--GLAMKTYHYYDPKT-----NGLDFQGMLQDLGAA 186 (280)
Q Consensus 119 g~~~al~~~~~~~~-----~~~~Gd~Vli~~P~y~~~~~~~~~~--G~~~~~v~~~~~~~-----~~~d~~~l~~~~~~~ 186 (280)
|+++|+..+ +.+ ++.|||+|++++|+|+.|...++.. |++++.++...+.+ |.+|.+.++++..++
T Consensus 163 Gat~al~~~--~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~ 240 (521)
T TIGR03801 163 GGTAAMCYI--FDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPS 240 (521)
T ss_pred CHHHHHHHH--HHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCC
Confidence 999999998 544 6789999999999999999987765 67788888732222 789999999877655
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC--CceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK--RLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
++ +++++|||||||.+++.+++++|+++|++| +++||+||+|.+|.++ ..++.+. ..+++|+++||||+
T Consensus 241 ~k---ai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~----~~sl~~~--~~~~vI~v~SfSK~ 311 (521)
T TIGR03801 241 IK---ALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD----FRSLFAE--LPYNTIGVYSFSKY 311 (521)
T ss_pred Cc---EEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc----ccchhhh--CCCCEEEEEcchhh
Confidence 44 888889999999999999999999999986 8999999999998863 1222332 33699999999999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
||++|||+||+++.
T Consensus 312 fg~~G~RlG~i~~~ 325 (521)
T TIGR03801 312 FGATGWRLGTIALH 325 (521)
T ss_pred ccCchhhhhhhhcC
Confidence 99999999999875
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=257.96 Aligned_cols=224 Identities=15% Similarity=0.171 Sum_probs=169.9
Q ss_pred CCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q 023599 25 ADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADS 104 (280)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~ 104 (280)
+++++...+.++.. +..++++|+.|+ +..+++...+++..+.+. . ...|+ ..+.++||+++++++.
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~i~l~~~~----~~~~~p~~~~~a~~~~~~--~--~~~y~-~~~~~~lr~~ia~~~~---- 69 (356)
T PRK08056 4 HGGNIREAATVLGI-SPDQLLDFSANI----NPLGMPVSLKRAIIDNLD--C--AERYP-DVEYRHLHQALARHHQ---- 69 (356)
T ss_pred CCccHHHHHHHhCC-ChhhEEEecccc----CCCCCCHHHHHHHHHHHH--h--cccCc-CccHHHHHHHHHHHhC----
Confidence 45667676766643 446789999998 344455555554444333 1 23464 4578999999999962
Q ss_pred ccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHh
Q 023599 105 PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 105 ~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
+++++|++ |+|+++++.++ +..+ .+|+ +++++|+|..|...++..|++++.+++.+++++.+| +.+++.+.
T Consensus 70 --~~~~~i~i--t~Ga~~~l~~~--~~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~ 140 (356)
T PRK08056 70 --VPASWILA--GNGETESIFAV--VSGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT 140 (356)
T ss_pred --cChhhEEE--CCCHHHHHHHH--HHHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc
Confidence 34689988 99999999988 5543 6775 778899999999999999999999998323345566 34555565
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
++++ +++++|||||||.+++.+++++|+++|++++++||+||+|.+|.++. ....+ .....+++++++||||+
T Consensus 141 ~~~k---~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~---~~~~~~~~i~~~S~SK~ 213 (356)
T PRK08056 141 PDLD---CLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE-TGFIP---QLADNPHLWVLRSLTKF 213 (356)
T ss_pred CCCC---EEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcc-hHHHH---HhccCCCEEEEEechhh
Confidence 4443 78889999999999999999999999999999999999999998752 11111 12334689999999999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
||++|+|+||++++
T Consensus 214 ~~~~G~RiG~~v~~ 227 (356)
T PRK08056 214 YAIPGLRLGYLVNS 227 (356)
T ss_pred ccCcchhheeeecC
Confidence 99999999999874
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=260.75 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=167.3
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.++++|+.|++ ....+ +.+.++..+... ...|+|..|.++||+++++++. +.+++|++ |+|++
T Consensus 29 ~~~i~l~~n~~----~~~~~-~~v~~a~~~~~~----~~~~~p~~g~~~lr~~ia~~~~------~~~~~i~~--t~G~~ 91 (359)
T PRK03158 29 EKIVKLASNEN----PYGPS-PKVKEAIAAHLD----ELALYPDGYAPELRTKVAKHLG------VDEEQLLF--GAGLD 91 (359)
T ss_pred CceEEecCCCC----CCCCC-HHHHHHHHHHHH----HhhcCCCCcHHHHHHHHHHHhC------CCHHHEEE--CCCHH
Confidence 37899999984 22233 334444443321 2457788899999999999972 24588988 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++..+ +.+++.+||+|++++|+|+.|...+...|++++.+++ + ++++|++.+++.+.++++ +++++|||||
T Consensus 92 ~~l~~~--~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~-~--~~~~d~~~l~~~~~~~~~---~v~i~~p~NP 163 (359)
T PRK03158 92 EVIQMI--SRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPL-K--DGGHDLEAMLKAIDEQTK---IVWICNPNNP 163 (359)
T ss_pred HHHHHH--HHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEec-C--CCCcCHHHHHHhcCCCCC---EEEEeCCCCC
Confidence 999988 6677889999999999999999999999999999998 3 457899999988865544 7778999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.+++.++++.|+ ++++||+||+|.++.++... ++.....+..+++|+++||||.||+||+|+||++++
T Consensus 164 tG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~ 237 (359)
T PRK03158 164 TGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDY--PDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIAS 237 (359)
T ss_pred CCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCccc--ccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCC
Confidence 999999999999998875 69999999999999875321 112223344568999999999999999999999875
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=237.76 Aligned_cols=266 Identities=51% Similarity=0.895 Sum_probs=246.8
Q ss_pred CccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHH
Q 023599 14 GDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNK 93 (280)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~ 93 (280)
+|++|..++..++..++.+.+.|.++..+..++|++|.+.+..+.|++.+.++++...+..+....++|.|..|.+.|++
T Consensus 2 ~~s~f~~I~~a~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~ 81 (410)
T KOG1412|consen 2 SMSFFANIPVAPPIEVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTK 81 (410)
T ss_pred CcchhcCCccCChHHHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhh
Confidence 57899999999999999999999888888999999999999999999999999999999877777899999999999999
Q ss_pred HHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcC-CeeeEEEeecCCCC
Q 023599 94 LSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAG-LAMKTYHYYDPKTN 172 (280)
Q Consensus 94 ~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G-~~~~~v~~~~~~~~ 172 (280)
+.++.+.+.+...+.++++.-|++.+|++|+.+.+.+++..-...+|.++.|+|.++..++...| ..+..++.++.++.
T Consensus 82 ~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k 161 (410)
T KOG1412|consen 82 AATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENK 161 (410)
T ss_pred hhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCc
Confidence 99999999999999999999999999999999999999887788899999999999999999999 46888999888888
Q ss_pred CcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc-CcCCChhHHHHhhhc
Q 023599 173 GLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVAD 251 (280)
Q Consensus 173 ~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~ 251 (280)
.+|++.+...++..+...++++....|||||.-.+.+++++|++..++.+++.+.|-+|+.|.. |.+.+.+.++.+.+.
T Consensus 162 ~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~ 241 (410)
T KOG1412|consen 162 CVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQ 241 (410)
T ss_pred eecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhc
Confidence 9999999999998887777777777799999999999999999999999999999999999988 667899999999998
Q ss_pred CCeEEEEecccccccccccccceEEEEc
Q 023599 252 GGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 252 ~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+..+++..||+|.||+.|-|+|.+.++.
T Consensus 242 g~e~fv~QSFaKNfGlYneRvGnltvv~ 269 (410)
T KOG1412|consen 242 GFELFVCQSFAKNFGLYNERVGNLTVVV 269 (410)
T ss_pred CCeEEEEhhhhhhcccccccccceEEEe
Confidence 8889999999999999999999987753
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=260.15 Aligned_cols=211 Identities=21% Similarity=0.183 Sum_probs=169.1
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
..++|+|+.|++ ... +.+.+.++..+.. . ...+|++..| .+||+++++++. +++++|++ |+|+
T Consensus 35 ~~~~i~l~~~~~----~~~-~~~~~~~al~~~~--~-~~~~Y~~~~g-~~lr~~ia~~~~------~~~~~i~~--t~G~ 97 (371)
T PRK05166 35 VPRIAKLGSNEN----PLG-PSPAVRRAFADIA--E-LLRLYPDPQG-RALREAIAARTG------VPADRIIL--GNGS 97 (371)
T ss_pred CcceEEcCCCCC----CCC-CCHHHHHHHHHHH--H-HhhcCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCH
Confidence 457899999984 222 3344555444433 1 2456988888 489999999862 24588988 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +.+++.+||+|+++.|+|..+...++..|++++.+++ + .++++|++.+++.+.++++ +++++||||
T Consensus 98 ~~~l~~~--~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~-~-~~~~~~~~~l~~~~~~~~~---~v~l~~p~N 170 (371)
T PRK05166 98 EDLIAVI--CRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTV-T-PDLGFDLDALCAAVARAPR---MLMFSNPSN 170 (371)
T ss_pred HHHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeec-C-CCCCCCHHHHHHhhhcCCC---EEEEeCCCC
Confidence 9999999 6677899999999999999999999999999999998 3 3468999999998876654 778899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH-hhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM-FVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|++ +++||+||+|.+|.++. ..++... +.+..+++|+++||||.||+||+|+||+++.
T Consensus 171 PtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~ 246 (371)
T PRK05166 171 PVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD--DYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVS 246 (371)
T ss_pred CCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc--CcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecC
Confidence 99999999999999999874 88999999999999642 2222222 2234468999999999999999999998764
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=260.45 Aligned_cols=216 Identities=18% Similarity=0.133 Sum_probs=166.9
Q ss_pred hHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccc
Q 023599 28 PIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAI 107 (280)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~ 107 (280)
.+.+.++++.. ...++|+|+.|+. ..++++. +.++..... ....| |..+.++||+++++++. +
T Consensus 39 ~~~~~~~~~~~-~~~~~i~l~~n~~----p~~~~~~-v~~a~~~~~----~~~~Y-p~~~~~~lr~~ia~~~~------~ 101 (380)
T PLN03026 39 PFEVLSAQLGR-KPEDIVKLDANEN----PYGPPPE-VLEALGNMK----FPYVY-PDPESRRLRAALAEDSG------L 101 (380)
T ss_pred ChHHHHHHhCC-CccceEEccCCCC----CCCCCHH-HHHHHHhhH----hhccC-CCCCHHHHHHHHHHHhC------c
Confidence 34444444422 3458999999983 3334444 433333321 12335 45678999999999973 3
Q ss_pred cCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH-hcC
Q 023599 108 KENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL-GAA 186 (280)
Q Consensus 108 ~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~-~~~ 186 (280)
.+++|++ |+|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++ .+++.+|++.+++++ .++
T Consensus 102 ~~~~I~~--t~Ga~~~i~~~--~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~~~~~~ 175 (380)
T PLN03026 102 ESENILV--GCGADELIDLL--MRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPR--TPDFSLDVPRIVEAVETHK 175 (380)
T ss_pred ChhhEEE--cCCHHHHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHHhccC
Confidence 4688988 99999999999 7777889999999999999999999999999999998 345789999999988 444
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
++ +++++|||||||.+++.+++++|++.+ ++||+||+|.+|.++. .. ....+..+++|+++||||.||
T Consensus 176 ~~---~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~--~~---~~~~~~~~~viv~~SfSK~~g 243 (380)
T PLN03026 176 PK---LLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE--SR---MKWVKKYDNLIVLRTFSKRAG 243 (380)
T ss_pred Cc---EEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc--ch---HHHHHhCCCEEEEecchHhhc
Confidence 44 888899999999999999999988753 8999999999998742 11 122334579999999999999
Q ss_pred ccccccceEEEE
Q 023599 267 LYGERVGALSVV 278 (280)
Q Consensus 267 ~~G~RvG~~v~~ 278 (280)
++|+|+||++..
T Consensus 244 laGlRiGy~~~~ 255 (380)
T PLN03026 244 LAGLRVGYGAFP 255 (380)
T ss_pred CccccceeeecC
Confidence 999999999875
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=258.79 Aligned_cols=206 Identities=19% Similarity=0.128 Sum_probs=165.0
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
++.++|+.|+ ++.++++..+++..+.+. . ...|++. +.++||+++++++. +++++|++ |+|++
T Consensus 43 ~~~i~l~~~~----~~~~~~~~~~~a~~~~~~--~--~~~Y~~~-~~~~Lr~aia~~~~------v~~e~I~i--t~Gs~ 105 (370)
T PRK09105 43 EGAVFLNANE----CPLGPSPAARDAAARSAA--L--SGRYDLE-LEDDLRTLFAAQEG------LPADHVMA--YAGSS 105 (370)
T ss_pred CCcEEecCCC----CCCCCCHHHHHHHHHHHH--H--hcCCCCc-hHHHHHHHHHHHhC------cChhhEEE--cCChH
Confidence 5679999998 344455555555444433 1 2346554 58999999999852 35689998 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++.++ +..++.+||+|++++|+|..|...++..|++++.+++ + +++.+|++.+++. .++++ +++++|||||
T Consensus 106 ~ai~~~--~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~-~~~~~---~v~l~nP~NP 177 (370)
T PRK09105 106 EPLNYA--VLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPL-R-ADGAHDVKAMLAA-DPNAG---LIYICNPNNP 177 (370)
T ss_pred HHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecC-C-CCCCCCHHHHHhc-CCCCC---EEEEeCCCCC
Confidence 999999 7777899999999999999999999999999999998 3 3577899999876 33333 8888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.++++++++.++ ++++||+||+|.+|... ++...+.+..+++++++||||+||++|||+||++++
T Consensus 178 TG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~-----~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~ 248 (370)
T PRK09105 178 TGTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA-----PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAAR 248 (370)
T ss_pred CCcCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC-----cchHHHHhhCCCEEEEecccHhhcCCccceeeeecC
Confidence 999999999999999764 69999999999887542 122344455679999999999999999999999975
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=262.91 Aligned_cols=219 Identities=18% Similarity=0.104 Sum_probs=165.2
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccC---CCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL---SADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+++|+|+.|.| ...+.+.+.++++.+...... ....+|++..|.++||+++++|+...++..+++++|++ |
T Consensus 29 ~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~i--t 103 (416)
T PRK09440 29 TPGAIMLGGGNP---AHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIAL--T 103 (416)
T ss_pred CCCceeccCCCC---CccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEE--c
Confidence 367899999996 223345567777666654321 12357999999999999999999766666678899998 9
Q ss_pred ccchhHHHHHHHHHHhhc-----CCCEEEE-eCCCCCChHHHHHHcCC----eeeEEEeecCC--CCCcCHHHHHHHHhc
Q 023599 118 LSGSGSLRIGADFLAKHY-----YQHTVYL-SQPTYGNHPNFFAAAGL----AMKTYHYYDPK--TNGLDFQGMLQDLGA 185 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~-----~Gd~Vli-~~P~y~~~~~~~~~~G~----~~~~v~~~~~~--~~~~d~~~l~~~~~~ 185 (280)
+|+++++.++ +..++. +||.|++ ++|+|+.|...+...|. ....++. +.+ .+++|++.++ +.+
T Consensus 104 ~Ga~~al~~~--~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~--~~~ 178 (416)
T PRK09440 104 NGSQSAFFYL--FNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELL-PEGQFKYHVDFEHLH--IDE 178 (416)
T ss_pred cChHHHHHHH--HHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccc-cccccccCCCHHHcc--cCC
Confidence 9999999999 666664 6899999 69999999886553331 2222333 222 3678999887 222
Q ss_pred CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-hcCCeEEEEeccccc
Q 023599 186 APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV-ADGGECLVAQSYSKT 264 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~ 264 (280)
+..+++++|||||||.+++.+++++|+++|++++++||+||+|.++.... .. .... ...+++|+++||||+
T Consensus 179 ---~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~--~~---~~~~~~~~~~vI~~~SfSK~ 250 (416)
T PRK09440 179 ---DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI--IF---SEATPLWNPNIILCMSLSKL 250 (416)
T ss_pred ---CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc--ch---hhcCccccCCeEEEeccccc
Confidence 23588899999999999999999999999999999999999998654321 11 1111 124699999999996
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
++||+|+||++++
T Consensus 251 -~~pGlRiG~~i~~ 263 (416)
T PRK09440 251 -GLPGVRCGIVIAD 263 (416)
T ss_pred -CCCcceEEEEeCC
Confidence 8999999999865
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=253.26 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=170.0
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
++++|+.++ ++.++++...+...+.+. ..+.| |.....+|++++++++.. .++++|++ ++|+.+
T Consensus 23 ~~i~LssNe----nP~gp~~~~~~~~~~~~~----~~~rY-Pd~~~~~l~~a~a~~~~~-----~~~~~V~~--gnGsde 86 (356)
T COG0079 23 GIIKLSSNE----NPYGPPPKVIEAIRAALD----KLNRY-PDPDYRELRAALAEYYGV-----VDPENVLV--GNGSDE 86 (356)
T ss_pred cceeecCCC----CCCCCCHHHHHHHHHHHH----hhccC-CCCcHHHHHHHHHHHhCC-----CCcceEEE--cCChHH
Confidence 689999987 655555544444443332 13445 445899999999999743 34588888 999999
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCC
Q 023599 123 SLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPT 202 (280)
Q Consensus 123 al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPT 202 (280)
.|..+ +.+++.+||+|+++.|+|..|...++..|++++.++. .+ +.+|++.+.+.+.++++ ++++|||||||
T Consensus 87 ~i~~l--~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~-~~--~~~d~~~~~~~~~~~~~---lv~i~nPNNPT 158 (356)
T COG0079 87 LIELL--VRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPL-KE--FRLDLDAILAAIRDKTK---LVFLCNPNNPT 158 (356)
T ss_pred HHHHH--HHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecc-cc--cccCHHHHHHhhhcCCC---EEEEeCCCCCC
Confidence 99999 7888999999999999999999999999999999998 33 88999999999987655 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 203 GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 203 G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|..++.++++++++.+.+ +.+||+||+|.+|... +. ..+....+|+++++||||.||++|+|+||++..
T Consensus 159 G~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~---~~---~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~ 227 (356)
T COG0079 159 GTLLPREELRALLEALPE-GGLVVIDEAYIEFSPE---SS---LELLKYPPNLIVLRTFSKAFGLAGLRVGYAIAN 227 (356)
T ss_pred CCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc---hh---hhhccCCCCEEEEEecHHhhhcchhceeeccCC
Confidence 999999999999999998 9999999999999872 11 223335568999999999999999999997653
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=277.31 Aligned_cols=222 Identities=9% Similarity=-0.009 Sum_probs=173.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcccc-CCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIK-ENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~-~~~i~~v~t~ 118 (280)
++.++|+|++|++ ..++++...++..+.+. .. .+ ..|.+++|+++++++...++.... +++|++ ++
T Consensus 695 ~g~~vI~LsinE~----d~ppPp~V~eAi~eal~--~~---~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIv--t~ 761 (1082)
T PLN02672 695 QESSLIHMDVDES----FLPVPSAVKASIFESFV--RQ---NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVY--GD 761 (1082)
T ss_pred CCCCEEEEeCCCC----CCCCCHHHHHHHHHHHh--hc---CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEE--eC
Confidence 4568999999994 33444444444444333 11 12 346788999999998777666554 357877 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++..+ +.+++.+||+|+++.|+|+.|...++..|++++.+|+..++++.+|++.+++++.+.++ .+++++||
T Consensus 762 Gs~elL~ll--l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~--~~I~L~nP 837 (1082)
T PLN02672 762 TSLALFNKL--VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKK--PWVYISGP 837 (1082)
T ss_pred CHHHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCC--CEEEEECc
Confidence 999999988 77888999999999999999999999999999999993345688999999999865322 26778889
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC-hhHHHHhh---hc---CCeEEEEeccccccccccc
Q 023599 199 H-NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD-ALPVRMFV---AD---GGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 199 ~-NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~---~~---~~~~i~~~S~SK~~~~~G~ 270 (280)
| ||||.+++.+++++|+++|++|+++||+||+|.++.|+.... ..++.+.. +. ..++|+++||||.|++|||
T Consensus 838 nhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGL 917 (1082)
T PLN02672 838 TINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGH 917 (1082)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHH
Confidence 7 999999999999999999999999999999999999853211 11122111 11 2389999999999999999
Q ss_pred ccceEEEE
Q 023599 271 RVGALSVV 278 (280)
Q Consensus 271 RvG~~v~~ 278 (280)
|+||++++
T Consensus 918 RIGylIap 925 (1082)
T PLN02672 918 EFGFLALN 925 (1082)
T ss_pred HheeEEeC
Confidence 99999974
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=255.07 Aligned_cols=221 Identities=15% Similarity=0.037 Sum_probs=167.6
Q ss_pred hHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc-
Q 023599 28 PIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA- 106 (280)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~- 106 (280)
++.+..+..+. ...+.++|+.|+| + .+. .+.+.++.++.. . ...|.+..|.++||+++++++....+..
T Consensus 8 ~~~~~~~~~~~-~~~~~i~l~~~~p-~---~~~-~~~~~~~~~~~~--~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~ 77 (357)
T TIGR03539 8 SLAPYKAKAAS-HPDGIVDLSVGTP-V---DPV-PPLIRAALAAAA--D--APGYPQTWGTPELREAIVDWLERRRGVPG 77 (357)
T ss_pred HHHHHHHHhhh-CCCCeEEccCCCC-C---CCC-CHHHHHHHHHHH--h--hCCCCcccCCHHHHHHHHHHHHHhcCCCC
Confidence 44555555533 4567899999985 2 222 344444444443 1 3569999999999999999997765554
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~ 185 (280)
+.+++|++ |+|+++++.++ +..+ +.+||.|++++|+|..+...++..|++++.++. ++.+. .+
T Consensus 78 ~~~~~I~i--t~G~~~~i~~~--~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~---------~~~l~---~~ 141 (357)
T TIGR03539 78 LDPTAVLP--VIGTKELVAWL--PTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADD---------PTELD---PV 141 (357)
T ss_pred CCcCeEEE--ccChHHHHHHH--HHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccCC---------hhhcC---cc
Confidence 77899998 99999999998 5555 689999999999999999988999998877642 22221 12
Q ss_pred CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH--hhhcCCeEEEEecccc
Q 023599 186 APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM--FVADGGECLVAQSYSK 263 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~~S~SK 263 (280)
+ ..++++++||||||.+++.+++++|+++|++||++||+||+|.++.++.. ....+.. ......++|+++||||
T Consensus 142 ~---~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK 217 (357)
T TIGR03539 142 G---PDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGR-PVSILDPRVCGGDHTGLLAVHSLSK 217 (357)
T ss_pred C---ccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC-CccceecccCCCccccEEEEecccc
Confidence 2 34788889999999999999999999999999999999999999888531 1111110 0012358999999999
Q ss_pred cccccccccceEEEE
Q 023599 264 TMGLYGERVGALSVV 278 (280)
Q Consensus 264 ~~~~~G~RvG~~v~~ 278 (280)
.|++||+|+||++++
T Consensus 218 ~~~~~G~R~G~~i~~ 232 (357)
T TIGR03539 218 RSNLAGYRAGFVAGD 232 (357)
T ss_pred ccCCCceeEEEEecC
Confidence 999999999999865
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=250.47 Aligned_cols=210 Identities=18% Similarity=0.136 Sum_probs=155.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
...++|+|+.|+ +..+++...+++..+.+. . ..+|++. +.++||+++|+++ .+++++|++ |+|
T Consensus 20 ~~~~~i~l~~~~----n~~~~~~~~~~a~~~~~~---~-~~~Y~~~-~~~~Lr~aia~~~------~v~~~~I~i--t~G 82 (360)
T PRK07392 20 PPDAILDFSASI----NPLGPPESVIAAIQSALS---A-LRHYPDP-DYRELRLALAQHH------QLPPEWILP--GNG 82 (360)
T ss_pred CcccEEEeCCcC----CCCCCCHHHHHHHHHHHH---H-hhcCCCc-CHHHHHHHHHHHh------CcChhhEEE--CCC
Confidence 334789999987 444455555554443333 1 4567665 5689999999997 245689998 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCC---CcCHHHHHHHHhcCCCCcEEEEec
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTN---GLDFQGMLQDLGAAPSGAIVLLQA 196 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~---~~d~~~l~~~~~~~~~~~~~v~~~ 196 (280)
+++++.++ +.. +.+||.|++++|+|..|...++..|++++.+++.++..+ ..+++.+++.. + +..+++++
T Consensus 83 ~~~~i~~~--~~~-l~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~l~ 155 (360)
T PRK07392 83 AAELLTWA--GRE-LAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-T---PNDGLLLN 155 (360)
T ss_pred HHHHHHHH--HHH-hCCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-c---CCCEEEEe
Confidence 99999998 555 357899999999999999999999999999998322222 24566665532 2 23488889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
|||||||.+++++++. ++++++++ +|+||+|.+|.++.. ..++....+..+++|+++||||+|++||+|+||++
T Consensus 156 nP~NPTG~~~~~~~l~---~l~~~~~~-~IiDE~y~~~~~~~~--~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v 229 (360)
T PRK07392 156 NPHNPTGKLWSREAIL---PLLEQFAL-VVVDEAFMDFLPPDA--EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAI 229 (360)
T ss_pred CCCCCCCCCcCHHHHH---HHHHHCCE-EEEECchhhhccCcc--ccchHHHhhcCCCEEEEEechhhhcCCchheeeee
Confidence 9999999999977665 45567775 666999999987531 22323333455799999999999999999999998
Q ss_pred EEc
Q 023599 277 VVR 279 (280)
Q Consensus 277 ~~~ 279 (280)
++.
T Consensus 230 ~~~ 232 (360)
T PRK07392 230 AHP 232 (360)
T ss_pred CCH
Confidence 753
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=251.49 Aligned_cols=208 Identities=21% Similarity=0.106 Sum_probs=165.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.++|+|+.|+ +..++++..++...+.+. .....+|++ .|.++||+++++++... ..++|++ |+|+
T Consensus 25 ~~~~i~l~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~Y~~-~~~~~lr~~ia~~~~~~-----~~~~I~~--t~G~ 90 (356)
T PRK04870 25 ATGMVKLDAME----NPYRLPAELRAELGERLA--EVALNRYPD-PRAAALKAALRAAMGVP-----AGADVLL--GNGS 90 (356)
T ss_pred CCCceeCcCCC----CCCCCCHHHHHHHHHHhh--ccccccCCC-CCHHHHHHHHHHHhCcC-----CCCcEEE--cCCH
Confidence 35799999998 444455555555554444 222455765 68899999999997321 1247877 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +..++.+||+|++++|+|..|...++..|++++.+++ + +++++|++.+++++.+.. ..+++++||||
T Consensus 91 ~~~i~~~--~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~-~-~~~~~d~~~l~~~~~~~~--~~~v~l~~p~N 164 (356)
T PRK04870 91 DELIQLL--ALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPL-T-ADFTLDLPAMLAAIAEHR--PALVFLAYPNN 164 (356)
T ss_pred HHHHHHH--HHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecC-C-CCCCCCHHHHHHHhhcCC--CCEEEEcCCCC
Confidence 9999999 6677899999999999999999999999999999998 3 457899999999986531 23788899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++| ++++|+||+|.+|.++ ... ..+ ...+++++++|||| +++||+|+||+++.
T Consensus 165 PtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~---~~~--~~~-~~~~~vi~~~S~SK-~~~~GlRiG~~i~~ 232 (356)
T PRK04870 165 PTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGD---SWL--PRL-ARFPNLLVMRTVSK-LGLAGLRLGYLAGH 232 (356)
T ss_pred CCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCc---chH--HHH-hhCCCEEEEecchh-hhhHHHhhhhhhCC
Confidence 999999999999999998 6789999999998653 111 122 34468999999999 89999999999864
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=248.49 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=158.3
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.+.|+|+.|++ ..+.++..++++.+.+. ......|+ ..|.+.||+++++++. +++++|++ |+|++
T Consensus 18 ~~~i~l~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~Y~-~~g~~~lr~~ia~~~~------~~~~~I~~--t~G~~ 82 (337)
T PRK03967 18 NYRIWLDKNEN----PFDLPEELKEEIFEELK--RVPFNRYP-HITSDPLREAIAEFYG------LDAENIAV--GNGSD 82 (337)
T ss_pred CceEEecCCCC----CCCCCHHHHHHHHHHhh--cCccccCC-CCCHHHHHHHHHHHhC------cCcceEEE--cCCHH
Confidence 46799999983 33455566666655554 22234564 5799999999999973 45689998 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++.++ +..+ +||+|+++.|+|..|...++..|++++.+++ + +++++|++.+++.+ ++++ +++++|||||
T Consensus 83 ~~l~~~--~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~~-~~~~---~v~~~~P~NP 152 (337)
T PRK03967 83 ELISYL--VKLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPL-K-EDFTIDGERIAEKA-KNAS---AVFICSPNNP 152 (337)
T ss_pred HHHHHH--HHHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeec-C-CCCCcCHHHHHHhc-cCCC---EEEEeCCCCC
Confidence 999887 4433 7999999999999999888999999999998 3 34789999998864 3333 6677999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.+++.+++ ++++++|+||+|.+|..+ .. ..+.+..+++|+++||||+|++||+|+||+++.
T Consensus 153 tG~~~~~~~l~~i~----~~~~~ii~De~y~~~~~~---~~---~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~ 219 (337)
T PRK03967 153 TGNLQPEEEILKVL----ETGKPVVLDEAYAEFSGK---SL---IGLIDEYPNLILLRTFSKAFGLAGIRAGYAIAN 219 (337)
T ss_pred CCCCCCHHHHHHHH----hcCCEEEEECchhhhccc---ch---HHHHhhCCCEEEEecchHhhcchhhhheeeecC
Confidence 99999988776654 379999999999998632 12 222334568999999999999999999999875
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=252.67 Aligned_cols=208 Identities=17% Similarity=0.102 Sum_probs=165.4
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
...++|+.|++ +.+.++..++...+.+. ...+|++. +.++||+++|+++. +++++|++ |+|++
T Consensus 32 ~~~~~l~~~~~----~~~~~~~~~~a~~~~~~----~~~~Y~~~-~~~~Lr~~ia~~~~------~~~~~I~i--t~G~~ 94 (369)
T PRK08153 32 PFRARIGANES----GFGPSPSVIAAMREAAA----EIWKYGDP-ENHDLRHALAAHHG------VAPENIMV--GEGID 94 (369)
T ss_pred cceeEecCCCC----CCCCCHHHHHHHHHHHH----HhhcCCCC-ccHHHHHHHHHHhC------CCHHHEEE--cCCHH
Confidence 45679999994 45556665555444432 13457665 58999999999971 35689988 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++..+ +..++.+||.|++++|+|+.+...+...|++++.+|+ +.+ ..|++.+++.+... +..+++++|||||
T Consensus 95 ~~l~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~-~~~--~~~~~~l~~~~~~~--~~~~i~l~~P~NP 167 (369)
T PRK08153 95 GLLGLI--VRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPY-RDD--REDLDALLDAARRE--NAPLVYLANPDNP 167 (369)
T ss_pred HHHHHH--HHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeC-CCC--CCCHHHHHHHhccc--CCcEEEEeCCCCC
Confidence 999999 6677899999999999999999888999999999998 333 57899988776532 2237878999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||.+++.+++++|+++|+ ++++||+||+|.++.++. ... .+....+++|+++||||+||+||+|+||++++.
T Consensus 168 tG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~--~~~---~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~ 239 (369)
T PRK08153 168 MGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAG--AAP---PIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAP 239 (369)
T ss_pred CCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcc--cch---hhhhcCCCEEEEecchHhccCcchheeeeecCH
Confidence 999999999999999987 499999999999998753 122 222234689999999999999999999999753
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=250.77 Aligned_cols=202 Identities=19% Similarity=0.167 Sum_probs=159.4
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.++|+|+.|++ ..++ ++.+.++..+... .....|++ .|.++||+++|+++. +++++|++ |+|++
T Consensus 24 ~~~i~l~~~~~----~~~~-~~~~~~a~~~~~~--~~~~~y~~-~~~~~lr~aia~~~~------~~~~~I~i--t~G~~ 87 (353)
T PRK05387 24 AKLIKLNTNEN----PYPP-SPKVLEAIRAALG--DDLRLYPD-PNADALRQAIAAYYG------LDPEQVFV--GNGSD 87 (353)
T ss_pred cceeeccCCCC----CCCC-CHHHHHHHHHHhh--hhhhcCCC-CcHHHHHHHHHHHhC------CCHHHEEE--cCCHH
Confidence 47899999994 3323 3444444444331 11345754 477999999999973 45689998 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++.++ +.+++.+||+|++++|+|+.|...++..|++++.+++ .+++.+|++.+++ ..+ +++++|||||
T Consensus 88 ~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~----~~~---~v~~~~P~NP 156 (353)
T PRK05387 88 EVLAHA--FLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPL--DDDFSIDVEDYLR----PNG---GIIFPNPNAP 156 (353)
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeec--CCCCCCCHHHHHh----cCC---EEEEeCCCCC
Confidence 999999 7777899999999999999999999999999999998 3457899998864 222 6788999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.+++++|+++++ ++++|+||+|.+|..+ .. ..+.+..+++++++||||.||+||+|+||+++.
T Consensus 157 tG~~~~~~~~~~l~~~~~--~~~livDe~y~~~~~~---~~---~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~ 225 (353)
T PRK05387 157 TGIALPLAEIERILAANP--DSVVVIDEAYVDFGGE---SA---IPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGH 225 (353)
T ss_pred CCCCCCHHHHHHHHHhCC--CcEEEEeCcccccCCc---ch---HHHHhhCCCEEEEEehhHhhcchhhhceeeecC
Confidence 999999999999998754 8999999999886432 22 122334568999999999999999999999864
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=246.88 Aligned_cols=202 Identities=16% Similarity=0.107 Sum_probs=155.0
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+.++|+|+.|+ +..++++..+++..+.+. ......|+ ..|.++||+++++|+.... +++++|++ |+|
T Consensus 17 ~~~~~i~l~~~~----~~~~~p~~~~~~~~~~~~--~~~~~~Y~-~~~~~~Lr~aia~~~~~~~---~~~~~i~i--t~G 84 (335)
T PRK14808 17 EKRDRTYLALNE----NPFPFPEDLVDEVFRRLN--SDTLRIYY-DSPDEELIEKILSYLDTDF---LSKNNVSV--GNG 84 (335)
T ss_pred CCCceeEecCCC----CCCCCCHHHHHHHHHHhh--hhhhhcCC-CCChHHHHHHHHHHhCCCC---CCcceEEE--cCC
Confidence 345899999999 445566666666555544 22223354 4589999999999986543 46799998 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +..+ |.|++++|+|..|...++..|++++.+++ ++ ++.++... + +.+ .+++++|||
T Consensus 85 a~~~i~~~--~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~-~~-~~~~~~~~----~-~~~---~~i~i~nP~ 148 (335)
T PRK14808 85 ADEIIYVM--MLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPL-TK-DLRIPEVN----V-GEG---DVVFIPNPN 148 (335)
T ss_pred HHHHHHHH--HHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecC-CC-cCCCChhH----c-cCC---CEEEEeCCC
Confidence 99999999 5544 78999999999999999999999999998 33 34444221 2 222 388899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||||.+++.+++++|+ +++++||+||+|.+|..+ .. .++.+..+++|+++||||+|+++|+|+||++++.
T Consensus 149 NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~---~~---~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~ 218 (335)
T PRK14808 149 NPTGHVFEREEIERIL----KTGAFVALDEAYYEFHGE---SY---VDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE 218 (335)
T ss_pred CCCCCCcCHHHHHHHH----hcCCEEEEECchhhhcCC---ch---HHHHHhCCCEEEEEechhhccCcccceEEEEeCH
Confidence 9999999999998886 479999999999998532 22 2223344699999999999999999999999763
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=251.92 Aligned_cols=210 Identities=20% Similarity=0.195 Sum_probs=165.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.++|+|+.|++ ..++++ .+.+++.+.. .. ...| +..|.++||+++++++. +.+++|++ |+|++
T Consensus 22 ~~~i~l~~~~~----~~~~~~-~~~~a~~~~~--~~-~~~y-~~~g~~~lr~~ia~~~~------~~~~~I~~--~~G~~ 84 (352)
T PRK03321 22 PGAIKLSSNET----PFGPLP-SVRAAIARAA--AG-VNRY-PDMGAVELRAALAEHLG------VPPEHVAV--GCGSV 84 (352)
T ss_pred ccceeccCCCC----CCCCCH-HHHHHHHHHH--Hh-cCcC-CCCcHHHHHHHHHHHhC------cCHHHEEE--CCCHH
Confidence 46899999984 222333 4444444333 11 3345 56799999999999973 34578988 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++..+ +..++.+||+|+++.|+|..|...++..|++++.+++ ++ ++++|++.+++.+.++++ ++++++||||
T Consensus 85 ~~l~~~--~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~-~~-~~~~~~~~l~~~~~~~~~---~v~l~~p~NP 157 (352)
T PRK03321 85 ALCQQL--VQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPL-TP-DHTHDLDAMAAAITDRTR---LIFVCNPNNP 157 (352)
T ss_pred HHHHHH--HHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccC-CC-CCCCCHHHHHHhhccCCC---EEEEeCCCCC
Confidence 999988 6667889999999999999998889999999999998 33 367899999998876544 7778899999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.+++.++++.+ +++++||+||+|.++.++.. ...++..+ +..+++++++||||.||+||+|+||++++
T Consensus 158 tG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~-~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRiG~~v~~ 231 (352)
T PRK03321 158 TGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDD-VPDGLELV-RDHPNVVVLRTFSKAYGLAGLRVGYAVGH 231 (352)
T ss_pred cCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcC-CCcHHHHH-hhCCCEEEEecchHHhhhHHHhhhhhcCC
Confidence 99999999999988876 47999999999999998532 22223333 34569999999999999999999999875
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=242.24 Aligned_cols=190 Identities=15% Similarity=0.130 Sum_probs=150.1
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
..++|+|+.++ +..+ + +.+.++..+.. .. ...|+. ...||+++++++. ++|++ |+|+
T Consensus 7 ~~~~i~l~~~~----np~~-p-~~~~~a~~~~~--~~-~~~yp~---~~~l~~~ia~~~~---------~~I~v--t~G~ 63 (311)
T PRK08354 7 EEGLIDFSASV----NPYP-P-EWLDEMFERAK--EI-SGRYTY---YEWLEEEFSKLFG---------EPIVI--TAGI 63 (311)
T ss_pred ccceeEecCCC----CCCC-C-HHHHHHHHHHH--HH-hhcCCC---hHHHHHHHHHHHC---------CCEEE--CCCH
Confidence 35789999987 3332 3 33344333322 11 234542 4779999999862 46777 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +. .+.+||+|++++|+|..|...++..|++++.++ +|++.+++.+. +++ +++++||||
T Consensus 64 ~~al~~~--~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~-~~~---~vi~~~P~N 128 (311)
T PRK08354 64 TEALYLI--GI-LALRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE-RNS---VVFFCNPNN 128 (311)
T ss_pred HHHHHHH--HH-hhCCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc-CCC---EEEEecCCC
Confidence 9999988 43 345899999999999999999999999987653 47888888775 223 688899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
|||.+++.+++++|+++|++++++||+||+|.+|.++.. . . ..+++|+++||||+|++||+|+||+++
T Consensus 129 PTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~--~-----~--~~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 129 PDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE--S-----P--EGENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred CCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc--c-----c--CCCcEEEEeccHhhcCCccceeeeeee
Confidence 999999999999999999999999999999999998631 1 1 146999999999999999999999986
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=245.32 Aligned_cols=207 Identities=16% Similarity=0.171 Sum_probs=161.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
+..++|+.|++ ..+.+...+++..+.+. .....+|.+. +.++||+++|+++. +.+++|++ |+|++
T Consensus 22 ~~~~~l~~~~~----~~~~p~~~~~a~~~~~~--~~~~~~y~~~-~~~~lr~~ia~~~~------~~~~~i~i--t~G~~ 86 (351)
T PRK14807 22 PYKYKMDANET----PFELPEEVIKNIQEIVK--SSQVNIYPDP-TAEKLREELARYCS------VVPTNIFV--GNGSD 86 (351)
T ss_pred CceeEccCCCC----CCCCCHHHHHHHHHHhh--cCcccCCCCc-cHHHHHHHHHHHhC------CCcccEEE--ecCHH
Confidence 45689999994 34455555555444443 2224557654 57899999999962 34689988 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~N 200 (280)
+++.++ +..++.+||+|++++|+|..+...++..|++++.+++ + +++++|++.+++++.+ +++ +++++||||
T Consensus 87 ~~l~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~~~~~~~k---~v~l~~p~N 159 (351)
T PRK14807 87 EIIHLI--MLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKL-K-EDYTYDVGSFIKVIEKYQPK---LVFLCNPNN 159 (351)
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeec-C-CCCCCCHHHHHHHhhccCCC---EEEEeCCCC
Confidence 999999 6677899999999999999999999999999999998 3 4578999999999875 333 777889999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
|||.+++.++++++++ +++.++|+||+|.++. +. ... ...+..+++|+++||||+||+||+|+||++.+.
T Consensus 160 PtG~~~~~~~l~~l~~---~~~~~~ivDe~y~~~~-~~--~~~---~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~ 229 (351)
T PRK14807 160 PTGSVIEREDIIKIIE---KSRGIVVVDEAYFEFY-GN--TIV---DVINEFENLIVLRTLSKAFGLAGLRVGYAVANE 229 (351)
T ss_pred CCCCCCCHHHHHHHHH---hCCCEEEEeCcchhhc-cc--chH---HHhhhCCCEEEEecchHhcccchhceeeeecCH
Confidence 9999999988877664 5567899999998874 21 221 222344699999999999999999999998753
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=245.40 Aligned_cols=173 Identities=15% Similarity=0.167 Sum_probs=140.6
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeee
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMK 162 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~ 162 (280)
+|..-..+||+++++++.. .+++|++ |+|+++++.++ +. ++.+| .|++++|+|..|...++..|++++
T Consensus 37 Yp~~~~~~lr~~ia~~~~~------~~~~I~i--t~Gs~~~l~~~--~~-~~~~~-~vv~~~P~y~~y~~~~~~~G~~v~ 104 (332)
T PRK06425 37 YPEISYTDIEDQIKIYTQG------LKIKVLI--GPGLTHFIYRL--LS-YINVG-NIIIVEPNFNEYKGYAFTHGIRIS 104 (332)
T ss_pred CcCcCHHHHHHHHHHHhCC------CcceEEE--CCCHHHHHHHH--HH-HhCCC-cEEEeCCChHHHHHHHHHcCCeEE
Confidence 3555688999999999633 3478888 99999999999 53 45676 577779999999999999999999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.+|+ ++ ++.|.+.+++ .+++ +++++|||||||.+++.+++++|+++|++++++||+||+|.+|.++. .
T Consensus 105 ~vp~-~~--~~~~~~~l~~---~~~k---~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~---~ 172 (332)
T PRK06425 105 ALPF-NL--INNNPEILNN---YNFD---LIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR---A 172 (332)
T ss_pred EEeC-Cc--ccCcHHHHhh---cCCC---EEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc---c
Confidence 9998 33 3456554442 2333 77788999999999999999999999999999999999999998752 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+...+.+..+++|+++||||+||+||+|+||++++.
T Consensus 173 ~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~ 209 (332)
T PRK06425 173 EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD 209 (332)
T ss_pred hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCH
Confidence 2334444445699999999999999999999999763
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=247.09 Aligned_cols=214 Identities=18% Similarity=0.231 Sum_probs=171.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
+..+.|+|+.|+ +..+. .+.+.+++.+... .....+|.+..|.++||+++++++. .+++++++ |+|
T Consensus 26 ~~~~~i~l~~~~----~~~~~-~~~~~~a~~~~~~-~~~~~~y~~~~g~~~lr~~ia~~l~------~~~~~v~~--~~g 91 (380)
T PRK06225 26 KDKEMIWMGQNT----NHLGP-HEEVREAMIRCIE-EGEYCKYPPPEGFPELRELILKDLG------LDDDEALI--TAG 91 (380)
T ss_pred hcCCeEEccCCC----CCCCC-CHHHHHHHHHHHh-cCCCCCCCCCcchHHHHHHHHHhcC------CCCCcEEE--eCC
Confidence 345799999887 33333 4444444444432 2234568888999999999999962 24578888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC-CCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK-TNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
+++++.++ +..++.+||+|++++|+|..+...++..|++++++++.+++ ++.+|++.+++.+.++++ ++++++|
T Consensus 92 ~t~al~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~---~v~l~~p 166 (380)
T PRK06225 92 ATESLYLV--MRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTR---LIYLIDP 166 (380)
T ss_pred HHHHHHHH--HHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCce---EEEEeCC
Confidence 99999999 77778899999999999999998999999999999973222 468999999998876543 7777899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|+++|+++|+||+|.+|..+. .+...+ ..+++++++||||.||++|+|+||+++.
T Consensus 167 ~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~--~~~~~i~~~s~SK~~g~~G~RiG~i~~~ 240 (380)
T PRK06225 167 LNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH----TLAAEY--APEHTVTSYSFSKIFGMAGLRIGAVVAT 240 (380)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC----Cchhhc--CCCCEEEEeechhhcCCccceeEEEecC
Confidence 9999999999999999999999999999999999886531 111222 2368999999999999999999999875
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=240.99 Aligned_cols=189 Identities=15% Similarity=0.127 Sum_probs=145.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.++|+|+.++ ++.+++.+.+.. ..+ ..|.. +...||+++++++. .++|++ |+|++
T Consensus 20 ~~~i~l~~ne----~p~~~~~~~~~~--~~~-------~~yp~--~~~~Lr~~ia~~~~--------~~~I~i--t~Gs~ 74 (330)
T PRK05664 20 ADWLDLSTGI----APWPWPVPAIPA--DAW-------ARLPE--TDDGLEAAARAYYG--------APQLLP--VAGSQ 74 (330)
T ss_pred HHheeecCCc----CCCCCCCcccCH--HHH-------HhCCC--ChHHHHHHHHHHhC--------CCCEEE--CcCHH
Confidence 3679999997 222222222211 111 12533 34899999999962 378888 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++.++ +. +.+||+|++++|+|+.|...++..|++++.+++ + .+++.+. +++ +++++|||||
T Consensus 75 ~al~~~--~~--~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~-~---------~~~~~~~-~~~---~v~l~nP~NP 136 (330)
T PRK05664 75 AAIQAL--PR--LRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDE-A---------EVEAALD-SLD---VLVVVNPNNP 136 (330)
T ss_pred HHHHHH--HH--ccCCCEEEEcCCChHHHHHHHHHcCCeEEEech-h---------hHhhhhc-CCC---EEEEeCCcCC
Confidence 999988 43 579999999999999999999999999999886 1 2344442 333 6788899999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||.+++.+++++|+++|++++++||+||+|.++... .++.++. ..+++|+++||||+||+||+|+||++++.
T Consensus 137 TG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~-----~s~~~~~-~~~~vi~~~SfSK~~gl~GlRiG~~v~~~ 208 (330)
T PRK05664 137 TGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQ-----HSLAACA-HRPGLIVLRSFGKFFGLAGARLGFVLAEP 208 (330)
T ss_pred CCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCc-----ccccccc-cCCCEEEEeeccccccCCCcceEEEEeCH
Confidence 999999999999999999999999999999877531 2233443 34689999999999999999999999853
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=246.13 Aligned_cols=199 Identities=19% Similarity=0.182 Sum_probs=158.8
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
..++|+.++ ++.+++.. + . ......| |......|++++++++ + +++++|++ |+|+++
T Consensus 29 ~~~~l~~Ne----np~~~~~~-~-------~--~~~~~~Y-p~~~~~~l~~~~a~~~-g-----~~~~~I~~--~~Gs~e 85 (351)
T PRK01688 29 GDVWLNANE----YPTAVEFQ-L-------T--QQTLNRY-PECQPKAVIENYAAYA-G-----VKPEQVLV--SRGADE 85 (351)
T ss_pred CceEecCCC----CCCCCChh-h-------c--ccccccC-CCCChHHHHHHHHHHh-C-----CCHHHEEE--cCCHHH
Confidence 468999887 43333322 1 1 1112334 5545689999999985 2 35689998 999999
Q ss_pred HHHHHHHHHHhhcCC-CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 123 SLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 123 al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
++.++ +.+++.+| |+|+++.|+|..|...++..|++++.+++ + +++.+|++.+++++ ++++ +++++|||||
T Consensus 86 ~i~~~--~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~-~-~~~~~d~~~l~~~~-~~~~---lv~l~nPnNP 157 (351)
T PRK01688 86 GIELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPT-L-DNWQLDLPAIADNL-DGVK---VVYVCSPNNP 157 (351)
T ss_pred HHHHH--HHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeec-C-CCCCCCHHHHHHhc-cCCc---EEEEeCCCCC
Confidence 99999 77778887 99999999999999999999999999998 3 35889999999987 3444 8888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.+++++|++.|++ +.+||+||+|.+|..+. +...+.....++|+++||||.||+||+|+||+++.
T Consensus 158 TG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~-----s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~ 228 (351)
T PRK01688 158 TGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQA-----SLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLAN 228 (351)
T ss_pred CCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCC-----ChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCC
Confidence 9999999999999999986 68899999999997431 12333344579999999999999999999999864
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=241.62 Aligned_cols=221 Identities=20% Similarity=0.127 Sum_probs=169.4
Q ss_pred ChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 023599 27 IPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA 106 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~ 106 (280)
..+....+++ ...++++|+.|++ ...+++. +.++..+.. .. ...|++.. ..+||+++++++.
T Consensus 20 ~~~~~~~~~~---~~~~~i~l~~~~~----~~~~~~~-~~~a~~~~~--~~-~~~y~~~~-~~~lr~~ia~~~~------ 81 (367)
T PRK02731 20 KPIEELVREY---GIADIIKLASNEN----PLGPSPK-AIEAIRAAA--DE-LHRYPDGS-GFELKAALAEKFG------ 81 (367)
T ss_pred CCHHHHHHhc---CCCceEEecCCCC----CCCCCHH-HHHHHHHHH--Hh-hcCCCCCc-HHHHHHHHHHHhC------
Confidence 4454444444 3457899999973 2223333 434333322 11 34576554 4789999999972
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
+.+++|++ |+|+++++.++ +..++++||+|++++|+|..|...++..|++++.+++ +++++|++.+++.+.++
T Consensus 82 ~~~~~i~~--t~G~~~~l~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~~ 154 (367)
T PRK02731 82 VDPERIIL--GNGSDEILELL--ARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTPR 154 (367)
T ss_pred cCHHHEEE--cCCHHHHHHHH--HHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCCC
Confidence 24588888 99999999988 6667889999999999999998888899999999987 24678999999998754
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
++ +++++|||||||.+++.++++++++.|+ +++++|+||+|.++.++.. ...++ ...+..+++|+++||||.||
T Consensus 155 ~~---~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~-~~~~~-~~~~~~~~~i~~~S~SK~~g 228 (367)
T PRK02731 155 TR---LVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKD-YEDGL-ELVAKFPNVVVTRTFSKAYG 228 (367)
T ss_pred Cc---EEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcC-cccHH-HHHhhcCCEEEEeeehHhhc
Confidence 44 7788999999999999999999999885 6999999999999987432 22223 23345578999999999999
Q ss_pred ccccccceEEEE
Q 023599 267 LYGERVGALSVV 278 (280)
Q Consensus 267 ~~G~RvG~~v~~ 278 (280)
++|+|+||+++.
T Consensus 229 ~~G~RiG~l~~~ 240 (367)
T PRK02731 229 LAGLRVGYGIAP 240 (367)
T ss_pred CcccceeeeeCC
Confidence 999999999875
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=242.46 Aligned_cols=180 Identities=18% Similarity=0.145 Sum_probs=147.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHHHHHcC
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNFFAAAG 158 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~~~~~G 158 (280)
..|++. +.++||+++++++. +++++|++ |+|+++++.++ +.+++.+| |+|++++|+|..|...++..|
T Consensus 54 ~~Y~~~-~~~~lr~~ia~~~~------~~~~~I~~--t~G~~~~l~~~--~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g 122 (364)
T PRK04781 54 RRYPDP-QPPGLRSALAALYG------CAPEQLLI--GRGSDEAIDLL--VRALCVPGRDAVLVTPPVFGMYAVCARLQN 122 (364)
T ss_pred ccCCCC-CHHHHHHHHHHHhC------cChHHEEE--eCCHHHHHHHH--HHHhcCCCCCeEEEcCCChHHHHHHHHHcC
Confidence 456554 57899999999972 34689988 99999999999 77778888 799999999999998889999
Q ss_pred CeeeEEEeecC-CCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 159 LAMKTYHYYDP-KTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 159 ~~~~~v~~~~~-~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
++++.+++.++ +++.+|++.+++.+... +..+++++|||||||.+++.+++++++++|+ ++++||+||+|.+|.++
T Consensus 123 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~--~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~ 199 (364)
T PRK04781 123 APLVEVPLVDGADGFHADVPAIVAAALAS--NAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDV 199 (364)
T ss_pred CEEEEEecCCCccCCCcCHHHHHHHHhcc--CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCC
Confidence 99999998322 34667899887655322 2237888999999999999999999999986 47899999999999864
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. . ...+.+..+|+|+++||||+||+||+|+||++++
T Consensus 200 ~--~---~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~ 235 (364)
T PRK04781 200 P--S---AVGLLARYDNLAVLRTLSKAHALAAARIGSLIAN 235 (364)
T ss_pred c--c---hHHHHhhCCCEEEEecChhhcccccceeeeeeCC
Confidence 2 1 1233345679999999999999999999999875
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=242.45 Aligned_cols=198 Identities=17% Similarity=0.147 Sum_probs=156.6
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
...++|+.++ ++.+++. .+ ... ....|++. +.++||+++|+++ + +++++|++ |+|++
T Consensus 31 ~~~~~l~~ne----~~~~~~~-~~-----~~~----~~~~Yp~~-~~~~Lr~aia~~~-~-----~~~~~I~i--t~Gs~ 87 (354)
T PRK04635 31 RGDIWINANE----SPFNNEY-KL-----DLA----RLNRYPEC-QPPELINAYSAYA-G-----VAPEQILT--SRGAD 87 (354)
T ss_pred CCcEEeeCCC----CCCCCCh-hh-----hhH----HhccCCCC-CHHHHHHHHHHHh-C-----cCHHHEEE--eCCHH
Confidence 3568999988 3333332 11 111 13446554 6899999999985 1 45689998 99999
Q ss_pred hHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+++.++ +..++.+| |+|++++|+|..|...++..|++++.+|+ + +++.+|.+.++. + ++++ +++++||||
T Consensus 88 ~~i~~~--~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~-~-~~~~~~~~~l~~-~-~~~~---li~i~nP~N 158 (354)
T PRK04635 88 EAIELL--IRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPL-T-ADYQLPLDYIEQ-L-DGAK---LVFICNPNN 158 (354)
T ss_pred HHHHHH--HHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEec-C-CCCCCCHHHHHh-c-cCCC---EEEEeCCCC
Confidence 999999 77778888 99999999999999999999999999998 3 347789988873 3 3333 888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|+ +++||+||+|.+|..+. +...+....+++|+++||||.||+||+|+||+++.
T Consensus 159 PTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~-----s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~ 229 (354)
T PRK04635 159 PTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEY-----SVADLLASYPNLVVLRTLSKAFALAGARCGFTLAN 229 (354)
T ss_pred CCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccCc-----chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCC
Confidence 9999999999999999886 49999999999987431 22333344578999999999999999999999864
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=237.59 Aligned_cols=207 Identities=17% Similarity=0.128 Sum_probs=165.9
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.++|+|++|++ +.+.+++.++++.+.+. ...+|++..| ++||+++++++. +.+++|++ |+|++
T Consensus 19 ~~~i~l~~~~~----~~~~~~~~~~a~~~~~~----~~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~--~~G~~ 81 (346)
T TIGR01141 19 KEVIKLNSNEN----PFGPPPKAKEALRAEAD----KLHRYPDPDP-AELKQALADYYG------VDPEQILL--GNGSD 81 (346)
T ss_pred CceEEccCCCC----CCCCCHHHHHHHHHhHH----HhhcCCCCCH-HHHHHHHHHHhC------cChHHEEE--cCCHH
Confidence 57999999994 44455555555544432 1356776666 899999999974 23578888 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++..+ +.+++.+||+|++++|+|+.+...++..|++++.+++ ++ ++.+|++.+++.+.++++ ++++++|+||
T Consensus 82 ~~l~~~--~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~-~~-~~~~d~~~l~~~~~~~~~---~v~l~~p~Np 154 (346)
T TIGR01141 82 EIIELL--IRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPL-DE-DGQLDLEDILVAIDDKPK---LVFLCSPNNP 154 (346)
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecc-CC-CCCCCHHHHHHhcCCCCC---EEEEeCCCCC
Confidence 999888 6677889999999999999998888999999999998 33 367899999998755443 7888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.++++++++.++ +++++|+||+|.++..+. .. ........++++++|+||.||++|+|+||+++.
T Consensus 155 tG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~--~~---~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~ 225 (346)
T TIGR01141 155 TGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP--ST---LPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIAN 225 (346)
T ss_pred CCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc--cH---HHHHhhCCCEEEEehhhHhhhchhhhceeeecC
Confidence 999999999999999987 799999999999877642 11 122223458999999999999999999999875
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=234.51 Aligned_cols=200 Identities=18% Similarity=0.099 Sum_probs=152.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+.+.++|+.++ +..+++....+...+.+. . ..+|.+..|.++||+++++++. +++++|++ |+|
T Consensus 20 ~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~---~-~~~Y~~~~g~~~lr~aia~~~~------~~~~~I~i--t~G 83 (349)
T PRK07908 20 AGPGLLDFAVNV----RHDTPPEWLRERLAARLG---D-LAAYPSTEDERRARAAVAARHG------RTPDEVLL--LAG 83 (349)
T ss_pred CCCCeEEecCCC----CCCCCCHHHHHHHHHHhh---H-hhcCCCccchHHHHHHHHHHhC------cChhhEEE--CCC
Confidence 457899999998 333344444444444332 1 3568888899999999999962 35689998 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +. +.+| .++++.|+|..+...++..|++++.+++ ++ ++++|++.+ .++++ +++++|||
T Consensus 84 a~~al~~~--~~--l~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~-~~-~~~~d~~~l----~~~~~---~i~l~np~ 149 (349)
T PRK07908 84 AAEGFALL--AR--LRPR-RAAVVHPSFTEPEAALRAAGIPVHRVVL-DP-PFRLDPAAV----PDDAD---LVVIGNPT 149 (349)
T ss_pred HHHHHHHH--Hh--cCCC-eEEEeCCCChHHHHHHHHcCCEEEeecc-Cc-ccCcChhHh----ccCCC---EEEEcCCC
Confidence 99999988 44 4664 6778899999999999999999999998 33 377888754 33333 88889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++.+ +|+ ++.++|+||+|.++..+. ..++.+. ..+++++++||||+|++||+|+||++++
T Consensus 150 NPTG~~~~~~~l~~---l~~-~~~~iIvDe~y~~~~~~~---~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~~~ 219 (349)
T PRK07908 150 NPTSVLHPAEQLLA---LRR-PGRILVVDEAFADAVPGE---PESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYALGA 219 (349)
T ss_pred CCCCCCcCHHHHHH---HHh-cCCEEEEECcchhhccCC---ccccccc--cCCCEEEEeecccccCCccceeeeeecC
Confidence 99999999886654 455 578888999999986531 2233322 2358999999999999999999999975
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=234.45 Aligned_cols=210 Identities=16% Similarity=0.118 Sum_probs=153.1
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIF 100 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~ 100 (280)
.+..+++.+......+.. ...++++|+.++ ++.+++.+.+.. ..+ ..|+. .. .+||+++++++.
T Consensus 4 ~~~~hg~~~~~~~~~~~~-~~~~~i~ls~Ne----np~~~~~~~~~~--~~~-------~~Yp~-~~-~~L~~~ia~~~~ 67 (339)
T PRK06959 4 APIAHGGNLHEAARRYGI-PYDAWLDLSTGI----NPHGYPVPPVPA--DAW-------RRLPE-DD-DGLAACAARYYG 67 (339)
T ss_pred CCcCCCchHHHHHHHcCC-ChhhhceeccCC----CCCCCCCCCCCH--HHH-------HhCCC-ch-HHHHHHHHHHhC
Confidence 344455666555555532 224689999988 333333122211 112 23544 34 899999999963
Q ss_pred CCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHH
Q 023599 101 GADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 101 ~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 180 (280)
-. .+++|++ |+|+++++.++ . .++.+|| |++++|+|..|...++..|++++.+++ +. +.
T Consensus 68 ~~-----~~~~I~i--~~Gs~e~i~~l--~-~~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~-~~-------~~-- 126 (339)
T PRK06959 68 AP-----DAAHVLP--VAGSQAAIRAL--P-ALLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDE-AA-------DT-- 126 (339)
T ss_pred CC-----CcccEEE--CcCHHHHHHHH--H-HhcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecc-cc-------hh--
Confidence 21 2488988 99999999866 3 3467876 889999999999999999999998887 22 11
Q ss_pred HHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEec
Q 023599 181 QDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQS 260 (280)
Q Consensus 181 ~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 260 (280)
+.+..+ +++++|||||||.+++.+++++|++.|++++.++|+||+|.+|.+. .++..+. ..+++|+++|
T Consensus 127 --~~~~~~---~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-----~s~~~~~-~~~~vi~l~S 195 (339)
T PRK06959 127 --LPAALT---HLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-----ASLAAHT-DRPGLVVLRS 195 (339)
T ss_pred --ccccCC---EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-----ccchhcc-CCCCEEEEec
Confidence 222223 7888999999999999999999999999999999999999998753 1223332 2468999999
Q ss_pred ccccccccccccceEEEE
Q 023599 261 YSKTMGLYGERVGALSVV 278 (280)
Q Consensus 261 ~SK~~~~~G~RvG~~v~~ 278 (280)
|||.||+||+|+||++++
T Consensus 196 fSK~~gl~GlRiGy~v~~ 213 (339)
T PRK06959 196 VGKFFGLAGVRAGFVLAA 213 (339)
T ss_pred ChhhcCCcchheEEEecC
Confidence 999999999999999975
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=231.77 Aligned_cols=210 Identities=18% Similarity=0.117 Sum_probs=164.5
Q ss_pred CCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q 023599 25 ADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADS 104 (280)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~ 104 (280)
+++++.+++.++. .+.++.++|+.|++ +.+++ ..+.. .....+|++..+ ++||+++++++.
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~--~~~~~-------~~~~~~y~~~~~-~~lr~~la~~~~---- 61 (330)
T TIGR01140 1 HGGNLRRAAARYG-IPPEDWLDFSTGIN----PLGPP--VPPIP-------ASAWARYPDPEY-DELRAAAAAYYG---- 61 (330)
T ss_pred CCccHHHHHHHcC-CChhheeEccccCC----CCCCC--hhhcc-------hHHHhhCCCccH-HHHHHHHHHHhC----
Confidence 3567888888874 45678999999983 22333 22211 112355766665 999999999962
Q ss_pred ccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHh
Q 023599 105 PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 105 ~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
+.+++|++ |+|+++++.++ ... +.+| .|++++|+|..|...++..|+++++++ |++.+++.+.
T Consensus 62 --~~~~~i~~--t~G~~~~i~~~--~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~ 124 (330)
T TIGR01140 62 --LPAASVLP--VNGAQEAIYLL--PRL-LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE 124 (330)
T ss_pred --CChhhEEE--CCCHHHHHHHH--HHH-hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc
Confidence 23588888 99999999988 333 4677 799999999999999999999888776 6888888873
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
+++ ++++++||||||.+++.+++++|+++|+++|++||+||+|.++.++. ++..+.+..+++|+++||||+
T Consensus 125 -~~~---~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-----~~~~~~~~~~~~i~~~S~SK~ 195 (330)
T TIGR01140 125 -ELD---VLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA-----SLAPQAARFPGLVVLRSLTKF 195 (330)
T ss_pred -cCC---EEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc-----chhhHhccCCCEEEEEecchh
Confidence 333 77779999999999999999999999999999999999999987641 223333345689999999999
Q ss_pred ccccccccceEEEEc
Q 023599 265 MGLYGERVGALSVVR 279 (280)
Q Consensus 265 ~~~~G~RvG~~v~~~ 279 (280)
||++|+|+||+++..
T Consensus 196 ~g~~G~R~G~i~~~~ 210 (330)
T TIGR01140 196 FGLAGLRLGFVVAHP 210 (330)
T ss_pred hcCchhhhhheeCCH
Confidence 999999999998753
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=230.54 Aligned_cols=219 Identities=18% Similarity=0.151 Sum_probs=162.2
Q ss_pred ChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 023599 27 IPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA 106 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~ 106 (280)
..+....+++.. ...++|+|+.|+ +..++++..++++.+.+. . ...|++.. .++||+++++++.
T Consensus 20 ~~~~~~~~~~~~-~~~~~i~l~~~~----~~~~~~~~~~~~~~~~~~---~-~~~y~~~~-~~~lr~~ia~~~~------ 83 (361)
T PRK00950 20 KSKEEIAREYGI-DPESIIKLGSNE----NPLGPSPKAVEAIEKELS---K-IHRYPEPD-APELREALSKYTG------ 83 (361)
T ss_pred CCHHHHHHHhCC-CccceEEccCCC----CCCCCCHHHHHHHHHHHH---h-hcCCCCCC-HHHHHHHHHHHhC------
Confidence 334444445432 334899999998 333344444444443333 1 34566554 4899999999962
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
++++++++ .++|+++++.++ +..++.+||+|++++|+|..+...++..|++++.++. ++++.+|++.+++.+.++
T Consensus 84 ~~~~~i~~-~~~Ga~~~i~~~--~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~~~~~~~ 158 (361)
T PRK00950 84 VPVENIIV-GGDGMDEVIDTL--MRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKR--EEDFSLDVDSVLNAITEK 158 (361)
T ss_pred CCHHHEEE-eCCCHHHHHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec--CCCCCcCHHHHHHHhccC
Confidence 23577764 246778888888 6666789999999999999999889999999999986 445789999999988654
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
++ ++++++||||||.+++.++++++ |+++++++|+||+|.++... .. ..+.+..+++++++||||.||
T Consensus 159 ~~---~v~~~~p~nptG~~~~~~~l~~l---~~~~~~~li~De~y~~~~~~---~~---~~~~~~~~~vi~~~S~SK~~g 226 (361)
T PRK00950 159 TK---VIFLCTPNNPTGNLIPEEDIRKI---LESTDALVFVDEAYVEFAEY---DY---TPLALEYDNLIIGRTFSKVFG 226 (361)
T ss_pred CC---EEEEeCCCCCCCCCcCHHHHHHH---HHHCCcEEEEECchhhhCcc---ch---HHHHHhcCCEEEEEeehHhhc
Confidence 44 77778999999999999877655 56789999999999988621 22 223334468999999999999
Q ss_pred ccccccceEEEE
Q 023599 267 LYGERVGALSVV 278 (280)
Q Consensus 267 ~~G~RvG~~v~~ 278 (280)
+||+|+||++++
T Consensus 227 ~~GlRiG~~~~~ 238 (361)
T PRK00950 227 LAGLRIGYGFVP 238 (361)
T ss_pred CchhhcchhcCC
Confidence 999999999875
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=218.68 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=163.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCC--CccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-
Q 023599 79 DKEYLPITGLPEFNKLSAKLIFGAD--SPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA- 155 (280)
Q Consensus 79 ~~~y~~~~G~~~lr~~ia~~l~~~~--~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~- 155 (280)
...|.+-.|.+.+|+++|+++.... ....+|+++++ ++|++++.+.+ ..-+.+|||..+||.|.|+++..-++
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv--~~G~T~ane~l--~fcLadpgdafLvPtPyY~gfdrdl~~ 189 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVV--TNGATSANETL--MFCLADPGDAFLVPTPYYPGFDRDLRW 189 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEE--ecccchhhHHH--HHHhcCCCceeeecCCCCCccccccee
Confidence 3458889999999999999975443 34567899888 99999999999 67778899999999999999976666
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ 232 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~ 232 (280)
..|.++++|.+..++++.++.+++|+++++. ..+..-++++||+||.|++++++++..++++|.++|+.+|+||+|.
T Consensus 190 rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya 269 (471)
T KOG0256|consen 190 RTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYA 269 (471)
T ss_pred ccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhc
Confidence 6799999999966677999999999998753 2344577889999999999999999999999999999999999999
Q ss_pred CcccCcCCChhHHHHhhhc----CCeEEEEecccccccccccccceEE
Q 023599 233 GFVMNMDADALPVRMFVAD----GGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~----~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
.-+|+.. ...++.++... .++++++.|+||.+|+||+|+|.+.
T Consensus 270 ~sVF~~~-~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviY 316 (471)
T KOG0256|consen 270 GSVFDKS-EFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIY 316 (471)
T ss_pred ccccCcc-CceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEE
Confidence 9999743 44455444332 3599999999999999999999764
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=215.27 Aligned_cols=242 Identities=20% Similarity=0.217 Sum_probs=180.8
Q ss_pred ChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHH-----------------HHHHHHhccC----CCCCCCCCC
Q 023599 27 IPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVR-----------------QAEQLLVNDL----SADKEYLPI 85 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~----~~~~~y~~~ 85 (280)
.++..+.+.. .+..-.+|+|+.|.| +++.+|.-...++ -+.....+.. ...++|++.
T Consensus 22 ~p~~~~~~~~-s~~~i~~i~lagGlP-np~~fp~~~~s~~p~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~s~alQYg~s 99 (472)
T KOG0634|consen 22 SPLRALGDIK-SASPISIISLAGGLP-NPDYFPIRSDSIKPQGSWKKENGKKLNNVTFAFENEASENTLPLSRALQYGQS 99 (472)
T ss_pred ChHHHhhhHh-hcCCCceEEecCCCC-CCCcccccccccccccCccccccccccceeeeccccCCcccchhhhhhccccc
Confidence 3444333333 333334899999987 5555554433333 0001111100 135789999
Q ss_pred CCCHHHHHHHHHHHh-CCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEE
Q 023599 86 TGLPEFNKLSAKLIF-GADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTY 164 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~-~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v 164 (280)
.|.++|...+.++.. ..+...+..-++++ |+|.+.+++.+ +..++..||.|++..++|......++..|++++.|
T Consensus 100 ~G~peLl~fik~h~~~~ih~p~~~~wdiii--t~G~t~~l~~~--l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv 175 (472)
T KOG0634|consen 100 SGIPELLLFIKDHNRPTIHAPPYKNWDIII--TNGNTDGLFKV--LRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPV 175 (472)
T ss_pred cCcHHHHHHHHHhccccccCCCCCCceEEE--ecCCchHHHHH--HHHhhcCCCceEEecccchHHHHhccccCceEEec
Confidence 999999999999743 23444445557777 99999999999 88889999999999999999999999999999999
Q ss_pred EeecCCCCCcCHHHHHHHHhcC-------CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAA-------PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~-------~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
++ |++ ++++|.|++.+... ++..++.++++.+||||..++.+++++|.++|++|+++||+||.|.-+.++
T Consensus 176 ~m-d~~--Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~ 252 (472)
T KOG0634|consen 176 KM-DQD--GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMN 252 (472)
T ss_pred cc-cCC--CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeecc
Confidence 98 444 79999999988653 235689999999999999999999999999999999999999999998885
Q ss_pred c-------CCChhHHHHhh----------hcCCeEEEEecccccccccccccceEEEE
Q 023599 238 M-------DADALPVRMFV----------ADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 238 ~-------~~~~~~~~~~~----------~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. ..++.+...+. +-..|||.+.||||.++ ||+|+||++..
T Consensus 253 ~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~ 309 (472)
T KOG0634|consen 253 TYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGN 309 (472)
T ss_pred ccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecC
Confidence 2 11111111111 12349999999999997 99999999865
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=203.61 Aligned_cols=216 Identities=19% Similarity=0.161 Sum_probs=181.6
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc-CCC
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY-YQH 138 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~-~Gd 138 (280)
+|.++++++.+-+....+....|+.++|++-.|+.+|+|+.++++.+.++++|.+ |.|++.|+..+ +.-++. +.+
T Consensus 87 fp~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~L--T~GAS~ai~~i--l~l~~~~~~~ 162 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFL--TTGASPAIRSI--LSLLIAGKKT 162 (475)
T ss_pred CCHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeee--cCCCcHHHHHH--HHHHhcCCCC
Confidence 6778888888877765665667999999999999999999999998889999999 99999999988 443343 779
Q ss_pred EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC--CCCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 023599 139 TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA--PSGAIVLLQASGHNPTGIDPTAQQWEQIRQ 216 (280)
Q Consensus 139 ~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~--~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~ 216 (280)
.|++|-|.|+-|...+..+|...+.+-+.++.+|++|.++|++.+.+. ..++.++++.||.||||++++++.+++|+.
T Consensus 163 GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~ 242 (475)
T KOG0258|consen 163 GVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIIC 242 (475)
T ss_pred ceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHH
Confidence 999999999999999999999998888844456999999999999764 345678888999999999999999999999
Q ss_pred HHHhCCceeEEcccCCCcccCcCCChhHHHHh-hhcC------CeEEEEecccccc-cccccccceEEEEc
Q 023599 217 LMRLKRLLPFFDCAYQGFVMNMDADALPVRMF-VADG------GECLVAQSYSKTM-GLYGERVGALSVVR 279 (280)
Q Consensus 217 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~------~~~i~~~S~SK~~-~~~G~RvG~~v~~~ 279 (280)
+|.+++++++.||+|++-+|.......+++-. ..++ ..++.++|.||.+ |-+|.|-||+-+.+
T Consensus 243 fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n 313 (475)
T KOG0258|consen 243 FAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLN 313 (475)
T ss_pred HHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeeccc
Confidence 99999999999999999999655444444332 2222 2678999999998 55999999987643
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=209.40 Aligned_cols=230 Identities=8% Similarity=-0.015 Sum_probs=170.0
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceee-cCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHH
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYR-TEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLI 99 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l 99 (280)
++......+.+..+.++ ..+.++++|++|+|. |....+.......+..+.+. .+ ..+|.+..|.++||+++++++
T Consensus 16 v~~~~~~~~~~~~~~l~-~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~--~g-~~~Y~~~~g~~~Lreaia~~~ 91 (460)
T PRK13238 16 VEPIRLTTREERERALA-EAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMM--RG-DEAYAGSRSYYRLEDAVKDIF 91 (460)
T ss_pred eccccccCHHHHHHHHH-HcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHH--hC-CcccCCCCCHHHHHHHHHHHh
Confidence 44444445556666663 356799999999973 44433322222333333343 23 457999999999999999997
Q ss_pred hCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC------CCC-
Q 023599 100 FGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP------KTN- 172 (280)
Q Consensus 100 ~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~------~~~- 172 (280)
.. +++++ |+||++|+.++ +.++++||| |++++|.|..|...+...|++++.+++... +.|
T Consensus 92 ~~--------~~vv~--t~ggt~A~~~~--~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~ 158 (460)
T PRK13238 92 GY--------PYTIP--THQGRAAEQIL--FPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFK 158 (460)
T ss_pred CC--------CcEEE--CCCHHHHHHHH--HHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEecccccccccccccc
Confidence 32 45666 99999999999 888899999 999999999999999999999999998311 234
Q ss_pred -CcCHHHHHHHHhcCC-CCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccC--CCcccCcC----CChh
Q 023599 173 -GLDFQGMLQDLGAAP-SGAIVLLQASGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAY--QGFVMNMD----ADAL 243 (280)
Q Consensus 173 -~~d~~~l~~~~~~~~-~~~~~v~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y--~~~~~~~~----~~~~ 243 (280)
.+|++.|++.+.+++ ++.+++++++|||||| .+++.+++++|.++|++||++||+|+++ ....|... ....
T Consensus 159 g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~ 238 (460)
T PRK13238 159 GNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDK 238 (460)
T ss_pred CCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCC
Confidence 499999999998642 3456899999999998 9999999999999999999999999966 22333210 0111
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccc
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVG 273 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG 273 (280)
++..+ ++.++|++|.+.++|||+|
T Consensus 239 si~~i------~~~~~s~~D~~~~Sg~K~g 262 (460)
T PRK13238 239 SIKEI------AREMFSYADGLTMSAKKDA 262 (460)
T ss_pred CHHHH------hhhhcccCcEEEEecccCC
Confidence 22222 4456899999999999984
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=195.29 Aligned_cols=218 Identities=20% Similarity=0.229 Sum_probs=163.3
Q ss_pred eEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHH
Q 023599 45 LNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSL 124 (280)
Q Consensus 45 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al 124 (280)
+||+.|.+ .....+..+....+. . .......|.+..|..++++.+++++....+....++++++ ++|+++++
T Consensus 1 ~~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~--~~~~t~a~ 72 (350)
T cd00609 1 IDLSIGEP----DFPPPPEVLEALAAA-A-LRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVV--TNGAQEAL 72 (350)
T ss_pred CCCCCCCC----CCCCCHHHHHHHHHH-h-hccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEE--ecCcHHHH
Confidence 57888885 222333333333321 1 1334567889999999999999998766443334577887 99999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH--HHHHHHHhcCCCCcEEEEecCCCCCC
Q 023599 125 RIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF--QGMLQDLGAAPSGAIVLLQASGHNPT 202 (280)
Q Consensus 125 ~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~--~~l~~~~~~~~~~~~~v~~~~p~NPT 202 (280)
..+ +..+..+||+|++++|+|..+...++..|.+++.++. ++ +...+. +.++....++ ..++++++|+|||
T Consensus 73 ~~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~-~~-~~~~~~~~~~~~~~~~~~---~~~v~i~~~~~~t 145 (350)
T cd00609 73 SLL--LRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPL-DE-EGGFLLDLELLEAAKTPK---TKLLYLNNPNNPT 145 (350)
T ss_pred HHH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEec-cc-ccCCccCHHHHHhhcCcc---ceEEEEECCCCCC
Confidence 999 7777789999999999999999999999999999998 33 333333 5555544333 3477777899999
Q ss_pred CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 203 GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 203 G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
|.+++.+++++|+++|+++|+++|+|++|..+.+...... .....+.....++++|+||.++.+|.|+||+++..
T Consensus 146 G~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~ 220 (350)
T cd00609 146 GAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPP--ALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPP 220 (350)
T ss_pred CcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccc--cccCcCccCcEEEEeecccccCCcccceEEEecCH
Confidence 9999999999999999999999999999998887432110 01112334578999999999998999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-23 Score=185.84 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=158.1
Q ss_pred CCCCeeEeecceee-cCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYR-TEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+.+.+.|..+++. |....+.......+..+.+. .+ ...|.+..|.++|++++++++.. +++++ |+
T Consensus 9 ~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~--~g-d~~Y~~~~g~~~Leeaia~~~g~--------~~vv~--t~ 75 (431)
T cd00617 9 AGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMM--LG-DEAYAGSKSFYDLEDAVQDLFGF--------KHIIP--TH 75 (431)
T ss_pred cCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHH--hC-CCccCCCCCHHHHHHHHHHHHCC--------CeEEE--cC
Confidence 45678888888751 11111111112222223333 23 24599999999999999999732 45666 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC--------CCCCcCHHHHHHHHhcC-CCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP--------KTNGLDFQGMLQDLGAA-PSG 189 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~--------~~~~~d~~~l~~~~~~~-~~~ 189 (280)
||++|+.++ +.+++.|||+| +++|.|..+...+...|++++.+++... .++.+|++.+++++.++ +++
T Consensus 76 ~Gt~Al~la--~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~ 152 (431)
T cd00617 76 QGRGAENIL--FSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAEN 152 (431)
T ss_pred CHHHHHHHH--HHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCC
Confidence 999999999 88889999988 6999999999999999999999998312 12459999999999866 233
Q ss_pred cEEEEecCCCCCC-CCCCCHHHHHHHHHHHHhCCceeEEcccCCC--cccC----cCCChhHHHHhhhcCCeEEEEeccc
Q 023599 190 AIVLLQASGHNPT-GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG--FVMN----MDADALPVRMFVADGGECLVAQSYS 262 (280)
Q Consensus 190 ~~~v~~~~p~NPT-G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~--~~~~----~~~~~~~~~~~~~~~~~~i~~~S~S 262 (280)
..+|++++||||+ |+.++.+++++|.++|++||++||+|++... ..+- +.....++. +.++.+.|+|
T Consensus 153 ~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~------ei~~e~~s~s 226 (431)
T cd00617 153 IPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIA------EIAREMFSYA 226 (431)
T ss_pred ccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHH------HHHHHhhccC
Confidence 4588889999998 9999999999999999999999999999421 1220 011111122 2356689999
Q ss_pred ccccccccc------cceEEEE
Q 023599 263 KTMGLYGER------VGALSVV 278 (280)
Q Consensus 263 K~~~~~G~R------vG~~v~~ 278 (280)
|.+.+.||| -||++..
T Consensus 227 d~~~mS~~K~~~~~~GG~i~~~ 248 (431)
T cd00617 227 DGCTMSAKKDGLVNIGGFLALR 248 (431)
T ss_pred CEEEEEeecCCCCccceEEEeC
Confidence 999999999 4477654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-23 Score=171.25 Aligned_cols=235 Identities=16% Similarity=0.128 Sum_probs=168.0
Q ss_pred HHHHHHHhhc-CCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccC---CCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q 023599 29 IYAVMAAFRE-DPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL---SADKEYLPITGLPEFNKLSAKLIFGADS 104 (280)
Q Consensus 29 ~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~G~~~lr~~ia~~l~~~~~ 104 (280)
|..+|+.+.. -+.+..|.|+-|.| ...|...+.++....++..++ ....+|..++|...|.+++++.+.++++
T Consensus 16 i~~lMdDl~d~Lrt~g~imLggGNP---a~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~yg 92 (417)
T COG3977 16 ITQLMDDLNDGLRTPGAIMLGGGNP---ARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYG 92 (417)
T ss_pred HHHHHHHHHhhccCCCceeeCCCCc---ccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhC
Confidence 5667766642 23456899999997 444566666776666665433 2346799999999999999999999999
Q ss_pred ccccCCCeEEeecccchhHHHHHHHHHH-hhcCC--CEEEEe-CCCCCChHHHHHHcCCeee---EEEeecC--CCCCcC
Q 023599 105 PAIKENRVSTVQCLSGSGSLRIGADFLA-KHYYQ--HTVYLS-QPTYGNHPNFFAAAGLAMK---TYHYYDP--KTNGLD 175 (280)
Q Consensus 105 ~~~~~~~i~~v~t~g~~~al~~~~~~~~-~~~~G--d~Vli~-~P~y~~~~~~~~~~G~~~~---~v~~~~~--~~~~~d 175 (280)
+.+++.||.+ |+|++.+++.++++++ ....| .+|+.| .|.|.+|..+.-.-..-|. .+...+. -.+.+|
T Consensus 93 wnit~~NIal--TnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vD 170 (417)
T COG3977 93 WNITAQNIAL--TNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVD 170 (417)
T ss_pred CCCccceeee--cCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccceeeccC
Confidence 9999999999 9999999999866554 22245 357766 6899888654321111010 0111111 126678
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE
Q 023599 176 FQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255 (280)
Q Consensus 176 ~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 255 (280)
++.+.-. +. ..++|++.|.||||.+++.+|+.+|-++|++||+.+|+|.+|+.-..+- -..-+..+ .++|+
T Consensus 171 F~~l~i~--e~---~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~i--ifsd~~~~--w~~Ni 241 (417)
T COG3977 171 FEHLHIG--ES---TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGI--IFSDATPL--WNENI 241 (417)
T ss_pred HHHcccc--cc---cceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCce--eccccccc--CCCCE
Confidence 8877653 33 3489999999999999999999999999999999999999996543321 00000111 45799
Q ss_pred EEEecccccccccccccceEEEE
Q 023599 256 LVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 256 i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|.+.|+|| .|+||.|+|.++.-
T Consensus 242 ilC~SLSK-~GLPG~R~GIiIan 263 (417)
T COG3977 242 ILCMSLSK-LGLPGSRCGIIIAN 263 (417)
T ss_pred EEEeehhh-cCCCCcceeEEEcc
Confidence 99999999 58999999988753
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=182.62 Aligned_cols=170 Identities=18% Similarity=0.131 Sum_probs=131.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HH
Q 023599 81 EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AA 156 (280)
Q Consensus 81 ~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~ 156 (280)
++++......|++.+|++.. .+++++ ++||++|+.++ +.+++.+||+|++++|+|+.+...+ ..
T Consensus 78 ~R~~~Pt~~~Le~~lA~leg--------~~~~iv--~~sG~~Ai~~~--l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~ 145 (427)
T PRK07049 78 SRFNHPNSEIVEDRLAVYEG--------AESAAL--FSSGMSAIATT--LLAFVRPGDVILHSQPLYGGTETLLAKTFRN 145 (427)
T ss_pred cCCCCcCHHHHHHHHHHHhC--------CCcEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHh
Confidence 34455567899999999852 145666 99999999999 8888999999999999999997664 45
Q ss_pred cCCeeeEEEeecCCCCCcCHHHHHHHHhcC--CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh---CCceeEEcccC
Q 023599 157 AGLAMKTYHYYDPKTNGLDFQGMLQDLGAA--PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL---KRLLPFFDCAY 231 (280)
Q Consensus 157 ~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~--~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~---~~~~ii~De~y 231 (280)
.|++++.++. ..|.+.+++.+.+. ..+.+++++++|+||||.+++.+++.+|++.|+. +++++|+||+|
T Consensus 146 ~Gi~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety 219 (427)
T PRK07049 146 FGVGAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTL 219 (427)
T ss_pred cCcEEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCc
Confidence 7888776653 24677888777532 1234589999999999999999999999998654 68999999998
Q ss_pred CCcccCcCCChhHHHHhhhcCCeEEEEeccccccc-ccccccceEEEE
Q 023599 232 QGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG-LYGERVGALSVV 278 (280)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RvG~~v~~ 278 (280)
....... + + .. ...|+++||||.|+ .+|+|+||++..
T Consensus 220 ~~~~~~~--p------l-~~-g~divv~S~SK~~gG~~glr~G~vv~~ 257 (427)
T PRK07049 220 LGPVFQK--P------L-EH-GADLSVYSLTKYVGGHSDLVAGAVLGR 257 (427)
T ss_pred cccccCC--c------c-cc-CCCEEEEcCceeecCCCCcEEEEEECC
Confidence 7654321 1 1 22 24578889999998 699999999853
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=177.34 Aligned_cols=207 Identities=12% Similarity=0.010 Sum_probs=150.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCC---CC----HHHHHHHHHHHhCCCCccccCCCe
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPIT---GL----PEFNKLSAKLIFGADSPAIKENRV 112 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---G~----~~lr~~ia~~l~~~~~~~~~~~~i 112 (280)
.+.+.|+|+.|+| .+.+.+++.++++.+.+. .. ..+|++.. |. .+|++++|+++.. +++
T Consensus 36 ~g~~~i~~~~~~~---lg~~~~~~v~~~~~~~~~--~~-~~~~~~s~~~~G~~~~~~~le~~ia~~~g~--------~~~ 101 (393)
T TIGR01822 36 DGREVLNFCANNY---LGLSSHPDLIQAAKDALD--EH-GFGMSSVRFICGTQDIHKELEAKIAAFLGT--------EDT 101 (393)
T ss_pred CCceEEEeeCCCc---cccCCCHHHHHHHHHHHH--Hh-CCCCCCcCcccCChHHHHHHHHHHHHHhCC--------CcE
Confidence 4568899999987 455556666666666554 21 13566665 76 7899999999742 455
Q ss_pred EEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCC
Q 023599 113 STVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSG 189 (280)
Q Consensus 113 ~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~ 189 (280)
++ ++|+++|+..+ +.+++.+||+|++++|.|..+...++..+.+...++ ..|++.+++++.+. ..+
T Consensus 102 ii--~~~~~~a~~~~--~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~ 170 (393)
T TIGR01822 102 IL--YASCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGAR 170 (393)
T ss_pred EE--ECchHHHHHHH--HHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCC
Confidence 66 88999999988 777889999999999999999888887777664432 26899999988752 114
Q ss_pred cEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEeccccccccc
Q 023599 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLY 268 (280)
Q Consensus 190 ~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~ 268 (280)
.++|++++++||||.+.+ +++|+++|++||+++|+||+|........ .. ......+. ....++++|+||.+ +
T Consensus 171 ~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~-~~-~~~~~~~~~~~~di~~~s~sK~l--~ 243 (393)
T TIGR01822 171 HRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPT-GR-GSHELCGVMGRVDIITGTLGKAL--G 243 (393)
T ss_pred ceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCC-CC-chHHhcCCCCCCeEEEEEChHHh--h
Confidence 568888889999999875 67789999999999999999954333211 11 11222222 23568899999986 4
Q ss_pred ccccceEEEE
Q 023599 269 GERVGALSVV 278 (280)
Q Consensus 269 G~RvG~~v~~ 278 (280)
|+|+||++++
T Consensus 244 g~r~G~~~~~ 253 (393)
T TIGR01822 244 GASGGFTTAR 253 (393)
T ss_pred CCCcEEEEeC
Confidence 7999998765
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=178.70 Aligned_cols=215 Identities=11% Similarity=-0.033 Sum_probs=147.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+.+.|+|+.|.+ .+.+.++...+.+.+.+.........|....|.+++++++++++....+. +++|++ |+|
T Consensus 40 ~g~~~i~l~~~~~---~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~--tsG 111 (397)
T PRK06939 40 DGKEVINFCANNY---LGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILY--SSC 111 (397)
T ss_pred CCCeEEEeeccCc---cccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEE--cCh
Confidence 4568999999875 34444555555555544421111112333568888888888876554332 256665 666
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEec
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQA 196 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~ 196 (280)
++++..+ +.+++.+||+|++++|+|+.+...++..|++++.++. .|++.+++.+.+. ..+.++++..
T Consensus 112 -~~a~~~~--~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~ 181 (397)
T PRK06939 112 -FDANGGL--FETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATD 181 (397)
T ss_pred -HHHHHHH--HHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEe
Confidence 7788888 7777899999999999999998888888988877764 4788888888642 1244577777
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEecccccccccccccceE
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
+.+||||.. +++++|+++|++++++||+||+|........ .... ....+. ....++++||||.++ |+|+||+
T Consensus 182 ~v~~~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~-~~~~-~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v 254 (397)
T PRK06939 182 GVFSMDGDI---APLPEICDLADKYDALVMVDDSHAVGFVGEN-GRGT-VEHFGVMDRVDIITGTLGKALG--GASGGYT 254 (397)
T ss_pred cCcCCCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCC-CCCH-HHHcCCCCCCcEEEEECHHHhC--ccCceEE
Confidence 788999974 4578889999999999999999963222211 1111 111122 235699999999994 6799999
Q ss_pred EEEc
Q 023599 276 SVVR 279 (280)
Q Consensus 276 v~~~ 279 (280)
+++.
T Consensus 255 ~~~~ 258 (397)
T PRK06939 255 AGRK 258 (397)
T ss_pred EeCH
Confidence 8753
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=173.66 Aligned_cols=210 Identities=13% Similarity=-0.008 Sum_probs=144.0
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCC----CHHHHHHHHHHHhCCCCccccCCCeEEe
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITG----LPEFNKLSAKLIFGADSPAIKENRVSTV 115 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G----~~~lr~~ia~~l~~~~~~~~~~~~i~~v 115 (280)
.+.++|||+.|.+ -+++.+++.++.+.+.+..-......|....| ..++++++++++.. ++++++
T Consensus 14 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~~- 82 (360)
T TIGR00858 14 DGRRLLNFSSNDY---LGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT-------EAALLF- 82 (360)
T ss_pred CCceEEecccCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC-------CCEEEE-
Confidence 4568999999864 24334455555444444310111111222233 45688899888631 255654
Q ss_pred ecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC-CCcEEEE
Q 023599 116 QCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP-SGAIVLL 194 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~v~ 194 (280)
++| ++++..+ +..++.+||+|++++|+|..+...++..|++++.++. +|++.+++.+.+.+ .+.++++
T Consensus 83 -~~G-~~~~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 83 -SSG-YLANVGV--ISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred -Cch-HHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEE
Confidence 665 5555555 5566789999999999999999999999998887764 58899999887643 2346888
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhhcCCeEEEEecccccccccccccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVADGGECLVAQSYSKTMGLYGERVG 273 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG 273 (280)
+++++||||...+ +++|.++|++++++||+||+|..+.++.. ....+...+ +..+++|+++||||.|+++| |
T Consensus 152 ~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~s~sK~~~~~g---G 224 (360)
T TIGR00858 152 TDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGL-KPEPVDIQVGTLSKALGSYG---A 224 (360)
T ss_pred EeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCC-CccCCcEEEEechhhhhccC---c
Confidence 8999999998766 56778899999999999999987765421 111111111 12357999999999999766 9
Q ss_pred eEEEE
Q 023599 274 ALSVV 278 (280)
Q Consensus 274 ~~v~~ 278 (280)
|++..
T Consensus 225 ~~~~~ 229 (360)
T TIGR00858 225 YVAGS 229 (360)
T ss_pred EEEcC
Confidence 98764
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-23 Score=171.43 Aligned_cols=171 Identities=18% Similarity=0.111 Sum_probs=142.3
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHHHHHcCCeeeEEEe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNFFAAAGLAMKTYHY 166 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~~~~~G~~~~~v~~ 166 (280)
...++.++++- -+.++++|++ ..|+-+.++++ +...+.|| ++|+.-.|+|.-|.--+...+++++.+|+
T Consensus 71 nk~ls~a~~~d------kpLt~dnic~--GvGsDE~ID~i--iR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl 140 (375)
T KOG0633|consen 71 NKRLSDALAQD------KPLTSDNICV--GVGSDELIDLI--IRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPL 140 (375)
T ss_pred cchhhhhcccC------CCCCccceEE--ecCcHHHHHHH--HhheecCCccceeecCCcceeEEEEeecCCceEEEecC
Confidence 44555555443 2456799998 99999999999 88889999 89999999999998777888999999998
Q ss_pred ecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 167 YDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
..+|.++.|.+.+.+... .+.+++++++|+||||..+..+++++|.+.-. |.++++||+|.+|..... . .
T Consensus 141 --~pdF~lnvdai~evl~~d-s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~~S--~---~ 210 (375)
T KOG0633|consen 141 --NPDFSLNVDAIAEVLELD-SKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGVES--R---M 210 (375)
T ss_pred --CCCccccHHHHHHHHhcc-ccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeeccccc--c---c
Confidence 447999999999988765 34558999999999999999999999987554 789999999999987421 1 3
Q ss_pred HhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+....+|++++.+|||+||++|+|+||-..+
T Consensus 211 ~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~ 242 (375)
T KOG0633|consen 211 KLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFP 242 (375)
T ss_pred hHhHhCCceeehhhhhhhcCcceeEeeccccc
Confidence 44566789999999999999999999997654
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=175.12 Aligned_cols=214 Identities=14% Similarity=0.045 Sum_probs=150.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+.+.+||+.|.+ .+.+.++...+...+.+.+.......|....|..++++++++++....+. ++.+++ ++|
T Consensus 31 ~g~~~id~~~~~~---~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~--~sG 102 (385)
T TIGR01825 31 NGKEVINLSSNNY---LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVF--QSG 102 (385)
T ss_pred CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEE--CcH
Confidence 4578999999874 34434555555554444421112345778889999999999998655432 244554 666
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC-CCcEEEEecCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP-SGAIVLLQASG 198 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p 198 (280)
++++..+ +..++.+||.|++++|.|..+...+...|+++..++ .+|++.+++.+.+.. .+.++++++++
T Consensus 103 -~~a~~~a--~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v 172 (385)
T TIGR01825 103 -FNTNQGV--LSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGV 172 (385)
T ss_pred -HHHHHHH--HHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecC
Confidence 6677777 667788999999999999988877777887776553 368888888876542 23558888888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+||||.+.+ +++|.++|++||+++|+||+|..+.++.... .....+.-..+++++++||||.|+++| ||++..
T Consensus 173 ~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~ 245 (385)
T TIGR01825 173 FSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGH 245 (385)
T ss_pred CcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecC
Confidence 999999877 5678999999999999999998876641111 111111001357899999999998665 998754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=177.15 Aligned_cols=164 Identities=18% Similarity=0.148 Sum_probs=130.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----H
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----A 155 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~ 155 (280)
..+++..+..+|+++++++... +++++ ++||++|+.++ +.+++.+||+|+++.|.|..+...+ +
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g~--------~~~l~--~~sG~~Ai~~a--l~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~ 125 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEGG--------EAAVV--AASGMGAISSS--LWSALKAGDHVVASDTLYGCTFALLNHGLT 125 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHh
Confidence 3334778899999999999642 34455 99999999988 7788899999999999998765543 5
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC--CceeEEcccCCC
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK--RLLPFFDCAYQG 233 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~--~~~ii~De~y~~ 233 (280)
..|++++.++. .|++.+++++.++++ +|++++|+||||.+.+ +++|+++|+++ ++++|+|++|..
T Consensus 126 ~~G~~v~~vd~-------~d~e~l~~~i~~~tk---lI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~ 192 (400)
T PRK06234 126 RYGVEVTFVDT-------SNLEEVRNALKANTK---VVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCT 192 (400)
T ss_pred hCCeEEEEECC-------CCHHHHHHHhccCCe---EEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCc
Confidence 68999888876 278999999876654 8889999999999887 66778888886 999999999987
Q ss_pred cccCcCCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEEE
Q 023599 234 FVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSVV 278 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~~ 278 (280)
..+.. + + +. ..-+++.|+||.++.+|+|+ ||+++.
T Consensus 193 ~~~~~--~------l-~~-g~Divv~S~sK~l~g~g~~~gG~v~~~ 228 (400)
T PRK06234 193 PYIQR--P------L-QL-GADVVVHSATKYLNGHGDVIAGFVVGK 228 (400)
T ss_pred hhcCC--c------h-hh-CCcEEEeeccccccCCCCceeEEEEec
Confidence 76531 1 1 11 23488999999999899986 988764
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=177.03 Aligned_cols=160 Identities=17% Similarity=0.120 Sum_probs=126.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-----HcC
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-----AAG 158 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-----~~G 158 (280)
+.....+|++.++++... +.+++ ++||++|+.++ +.+++.+||+|+++.|.|+.+...+. ..|
T Consensus 74 ~~Pt~~~LE~~lA~l~g~--------~~~l~--~~sG~~Ai~~a--l~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G 141 (418)
T PLN02242 74 FNPTVLNLGRQMAALEGT--------EAAYC--TASGMSAISSV--LLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN 141 (418)
T ss_pred CChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence 345577899999998532 44555 99999999999 88889999999999999988876653 367
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
++++.++. .|++.++++++++ +.++|++++|+||||.+. ++++|+++|++++++||+|++|..+.++.
T Consensus 142 ~~~~~~d~-------~d~e~l~~~i~~~--~tklV~lesp~NPtG~v~---dl~~I~~la~~~gi~livDea~~~~~~~~ 209 (418)
T PLN02242 142 ITTTFVDI-------TDLEAVKKAVVPG--KTKVLYFESISNPTLTVA---DIPELARIAHEKGVTVVVDNTFAPMVLSP 209 (418)
T ss_pred ceEEEcCC-------CCHHHHHHhcCcC--CCEEEEEecCCCCCCccc---CHHHHHHHHHHhCCEEEEECCCCccCCCH
Confidence 77766654 3789999988763 123888999999999887 47788999999999999999998776532
Q ss_pred CCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~~ 278 (280)
.. . ...|+++||||.++.+|+|+ ||+++.
T Consensus 210 -------~~---~-g~divv~S~SK~l~g~g~~~gG~iv~~ 239 (418)
T PLN02242 210 -------AR---L-GADVVVHSISKFISGGADIIAGAVCGP 239 (418)
T ss_pred -------HH---c-CCcEEEEeCccccCCCCCceEEEEEcC
Confidence 11 1 24588999999999999985 888754
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=168.90 Aligned_cols=163 Identities=15% Similarity=0.014 Sum_probs=125.8
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh----hcCCCEEEEeCCCCCC----hHHHHHHcCC
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK----HYYQHTVYLSQPTYGN----HPNFFAAAGL 159 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~----~~~Gd~Vli~~P~y~~----~~~~~~~~G~ 159 (280)
.+++|+.+++++... .+++|++ |+|++++++++ +.++ +.+||+|++++|.|+. +...++..|+
T Consensus 62 ~~~~r~~la~~~g~~-----~~~~i~~--t~g~t~~l~~~--~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~ 132 (398)
T TIGR03392 62 YELARQQVARFLNAP-----DAENIVW--TRGTTESINLV--AQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGA 132 (398)
T ss_pred HHHHHHHHHHHhCCC-----CCCeEEE--eCChHHHHHHH--HHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCc
Confidence 467999999987432 2478888 99999999999 5554 4789999999999865 4555678899
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.++. + .++.+|++.+++++.++++ ++++++|+||||.+++ +++|+++|+++|+++++|++|.......
T Consensus 133 ~v~~v~~-~-~~~~~~~~~l~~~i~~~t~---lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~~- 203 (398)
T TIGR03392 133 KVVKLPI-G-ADLLPDIRQLPELLTPRTR---ILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHGPP- 203 (398)
T ss_pred EEEEEec-C-CCCCcCHHHHHHHhccCce---EEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCCC-
Confidence 9999998 3 3456899999999976654 8889999999999987 4567889999999999999996554421
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ +. +.+ --+++.|.+|.+|.+| +||+++.
T Consensus 204 -~---~~---~~~-~d~~~~s~~K~~gp~G--~G~l~~~ 232 (398)
T TIGR03392 204 -D---VQ---ALD-IDFYAFSGHKLYGPTG--IGVLYGK 232 (398)
T ss_pred -C---hh---hcC-CCEEEEecccccCCCc--eEEEEEc
Confidence 1 11 111 2356778889998665 8999865
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=166.28 Aligned_cols=210 Identities=14% Similarity=0.027 Sum_probs=141.0
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCC----CHHHHHHHHHHHhCCCCccccCCCeEEe
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITG----LPEFNKLSAKLIFGADSPAIKENRVSTV 115 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G----~~~lr~~ia~~l~~~~~~~~~~~~i~~v 115 (280)
.+.+.|||+.|++ .++..++..+++..+.+..-......|....| ..++++++++++. .++.++
T Consensus 37 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~-- 104 (385)
T PRK05958 37 DGRRMLNFASNDY---LGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG-------AERALL-- 104 (385)
T ss_pred CCceEEEeeCCCc---ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-------CCcEEE--
Confidence 5678999999863 23323344444444444310100112222334 3566677777652 124444
Q ss_pred ecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEe
Q 023599 116 QCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~ 195 (280)
+++|++++..+ +..++.+||+|++++|.|+.+...++..|++++.++. .|++.+++.+++..++.+++++
T Consensus 105 -~~~g~~~~~~~--l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~ 174 (385)
T PRK05958 105 -FSSGYAANLAV--LTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVT 174 (385)
T ss_pred -ECcHHHHHHHH--HHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEE
Confidence 55566676666 5667889999999999999999888888998888775 3789999988754223457778
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc-CCChhHHHHhhhcCCeEEEEecccccccccccccce
Q 023599 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM-DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGA 274 (280)
Q Consensus 196 ~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~ 274 (280)
++++||||...+ +++|+++|++||+++|+||+|....+.. .........+ +...++|++.|+||.|+.+| ||
T Consensus 175 ~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G---g~ 247 (385)
T PRK05958 175 ESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGL-AGEPDVILVGTLGKALGSSG---AA 247 (385)
T ss_pred EecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCC-CCCCceEEEEechhhcccCC---cE
Confidence 889999997665 6778899999999999999997765531 1111111112 23458999999999998777 88
Q ss_pred EEEE
Q 023599 275 LSVV 278 (280)
Q Consensus 275 ~v~~ 278 (280)
++..
T Consensus 248 ~~~~ 251 (385)
T PRK05958 248 VLGS 251 (385)
T ss_pred EEcC
Confidence 7654
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-20 Score=164.80 Aligned_cols=173 Identities=13% Similarity=0.072 Sum_probs=129.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH---HHHHc
Q 023599 81 EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN---FFAAA 157 (280)
Q Consensus 81 ~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~---~~~~~ 157 (280)
.|++..+..++++.+++++. ++++++ +.||++++.++ +.+++.+||+|+++.|+|..+.. ..+..
T Consensus 27 ~~~~~~~~~~l~~~~a~~~g--------~~~~~~--~~~gt~a~~~~--~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~ 94 (338)
T cd06502 27 VYGEDPTTAKLEARAAELFG--------KEAALF--VPSGTAANQLA--LAAHTQPGGSVICHETAHIYTDEAGAPEFLS 94 (338)
T ss_pred ccCCCHHHHHHHHHHHHHhC--------CCeEEE--ecCchHHHHHH--HHHhcCCCCeEEEecCcceeeecCCcHHHHc
Confidence 57777778899999999864 255666 88889999988 77778899999999999865432 34457
Q ss_pred CCeeeEEEeecCCCCCcCHHHHHHHHhcCC----CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 158 GLAMKTYHYYDPKTNGLDFQGMLQDLGAAP----SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 158 G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
|++++.++. +. +.+|++.+++++.+.. .+..++++++|||| |.+++.+++++|+++|+++|+++|+|++|..
T Consensus 95 g~~~~~v~~-~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~ 170 (338)
T cd06502 95 GVKLLPVPG-EN--GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLA 170 (338)
T ss_pred CceEEeecC-CC--CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHH
Confidence 999999987 22 5799999999987521 13458889999998 6677999999999999999999999999864
Q ss_pred cccC-cCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 234 FVMN-MDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 234 ~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+... ... ++... ..+.++ ++.|+||.|+++| |++++
T Consensus 171 ~~~~~~~~---~~~~~-~~~~d~-~~~s~sK~~~~~~---g~~~~ 207 (338)
T cd06502 171 NAAAALGV---ALKTY-KSGVDS-VSFCLSKGGGAPV---GAVVV 207 (338)
T ss_pred HHHHhcCC---CHHHH-HhcCCE-EEEeccccCCCcc---ceEEE
Confidence 4221 111 11222 122344 5779999999887 66443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=166.43 Aligned_cols=200 Identities=14% Similarity=0.065 Sum_probs=133.9
Q ss_pred eEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHH
Q 023599 45 LNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSL 124 (280)
Q Consensus 45 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al 124 (280)
|+|+..+ +.. |.+.+.++..+.. .. ...|+|..+..+|++++++++.. +.+++ +.||++++
T Consensus 2 ~~~~~~~----~~~--p~~~~~~a~~~~~--~~-~~~Y~~~~~~~~L~~~la~~~g~--------~~~~v--~~~g~~a~ 62 (333)
T PRK10534 2 IDLRSDT----VTR--PSRAMLEAMMAAP--VG-DDVYGDDPTVNALQDYAAELSGK--------EAALF--LPTGTQAN 62 (333)
T ss_pred ccccccc----CCC--CCHHHHHHHHhcc--CC-CcccCCCHHHHHHHHHHHHHhCC--------CeEEE--eCchHHHH
Confidence 5677655 432 5555555554433 22 34687888899999999999521 33445 88888888
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCC-hHHH-HHHcC-CeeeEEEeecCCCCCcCHHHHHHHHhcCC---CCcEEEEecCC
Q 023599 125 RIGADFLAKHYYQHTVYLSQPTYGN-HPNF-FAAAG-LAMKTYHYYDPKTNGLDFQGMLQDLGAAP---SGAIVLLQASG 198 (280)
Q Consensus 125 ~~~~~~~~~~~~Gd~Vli~~P~y~~-~~~~-~~~~G-~~~~~v~~~~~~~~~~d~~~l~~~~~~~~---~~~~~v~~~~p 198 (280)
.++ +...+.+||+|+++.|+|.. |... ....| ++++.++. .+++.+|++.+++++.++. .+..+++++||
T Consensus 63 ~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np 138 (333)
T PRK10534 63 LVA--LLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDA--AADGTLPLDKVAAKIKPDDIHFARTRLLSLENT 138 (333)
T ss_pred HHH--HHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecC--CCCCCCCHHHHHHhhcccCcCcccceEEEEecC
Confidence 887 67778899999999888752 3221 23333 67777776 3467899999999886521 02347888765
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc-CCChhHHHHhhhcCCeEEEEecccccccccccccce-EE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM-DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGA-LS 276 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~-~v 276 (280)
+ ||.+++.+++++|+++|+++++++++||+|....... ... ...+....++++ .||||.|+++ +|| ++
T Consensus 139 ~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~---~~~~~~~~~~~~--~s~SK~~~~~---~G~~~~ 208 (333)
T PRK10534 139 H--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCE---LKEITQYCDSFT--ICLSKGLGTP---VGSLLV 208 (333)
T ss_pred C--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCC---HHHHHhcCCEEE--EEeEcCCCCc---ccceEE
Confidence 5 6999999999999999999999999999986221100 111 122222223333 3899998864 885 54
Q ss_pred E
Q 023599 277 V 277 (280)
Q Consensus 277 ~ 277 (280)
.
T Consensus 209 ~ 209 (333)
T PRK10534 209 G 209 (333)
T ss_pred c
Confidence 3
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-20 Score=163.71 Aligned_cols=204 Identities=16% Similarity=0.071 Sum_probs=134.5
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
.+++|+.+.+ . .+.+.+.++...... ......|.+ ...+|++++++++.. +.+++ +++|++
T Consensus 6 ~~~~~~~~~~----~--~~~~~~~~a~~~~~~-~~~~~~~~~--~~~~l~~~la~~~~~--------~~~~~--~~~Gs~ 66 (353)
T PLN02721 6 RVVDLRSDTV----T--KPTDAMRAAMANAEV-DDDVLGYDP--TALRLEEEMAKIFGK--------EAALF--VPSGTM 66 (353)
T ss_pred hhhhhhcccc----c--CCCHHHHHHHHhccC-CCcccCCCH--HHHHHHHHHHHHhCC--------ceeEE--ecCccH
Confidence 4678988885 2 244555555544311 111233333 378999999999742 22344 666677
Q ss_pred HHHHHHHHHHhhc-CCCEEEEeCCCCCChHH---HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC----CCCcEEEE
Q 023599 123 SLRIGADFLAKHY-YQHTVYLSQPTYGNHPN---FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA----PSGAIVLL 194 (280)
Q Consensus 123 al~~~~~~~~~~~-~Gd~Vli~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~----~~~~~~v~ 194 (280)
+..++ +...+. +||+|++++|+|..... .+...|++++.++. ++++.+|++.+++.+.+. .++.++++
T Consensus 67 a~~~~--l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 142 (353)
T PLN02721 67 GNLIS--VLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKN--NEDGTMDLDAIEAAIRPKGDDHFPTTRLIC 142 (353)
T ss_pred HHHHH--HHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCC--CcCCCcCHHHHHHHHHhccCCCCCcceEEE
Confidence 76666 566666 99999999999853333 56678999999987 345678999999999732 01233666
Q ss_pred ecC-CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC-cCCChhHHHHhhhcCCeEEEEeccccccccccccc
Q 023599 195 QAS-GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN-MDADALPVRMFVADGGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 195 ~~~-p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv 272 (280)
+++ +|||||.+++.+++++|+++|+++|+++|+|++|...... ...+ ...+....+. ++.|+||.|+. ++
T Consensus 143 l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~---~~~~~~~~d~--~~~s~sK~l~~---~~ 214 (353)
T PLN02721 143 LENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVP---VHRLVKAADS--VSVCLSKGLGA---PV 214 (353)
T ss_pred EeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCC---HHHHhhhCCE--EEEecccccCC---ce
Confidence 644 6899999999999999999999999999999987532211 0111 1222222222 34479999873 47
Q ss_pred ceEEE
Q 023599 273 GALSV 277 (280)
Q Consensus 273 G~~v~ 277 (280)
||+++
T Consensus 215 G~~~~ 219 (353)
T PLN02721 215 GSVIV 219 (353)
T ss_pred eeEEe
Confidence 87443
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-20 Score=163.73 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
..+|++.+++++. . +++++ |+|+++++.++ +.+++.+||+|+++.++|......++..|++++.++.
T Consensus 46 ~~~l~~~la~~~g-~-------~~i~~--~~g~t~al~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~- 112 (361)
T cd06452 46 IKDFHHDLAEFLG-M-------DEARV--TPGAREGKFAV--MHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPN- 112 (361)
T ss_pred HHHHHHHHHHHcC-C-------ceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEec-
Confidence 5688999999852 1 67777 99999999999 7777899999999999887776678889999999998
Q ss_pred cCC-CCCcCHHHHHHHHhcCC----CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 168 DPK-TNGLDFQGMLQDLGAAP----SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 168 ~~~-~~~~d~~~l~~~~~~~~----~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
+.+ ++.+|++.+++++.+.. ++..++++++|+||||... ++++|+++|+++++++|+|++|.....+. .
T Consensus 113 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~---~~~~i~~~~~~~~~~vivD~a~~~g~~~~--~- 186 (361)
T cd06452 113 TGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH---DAKKIAKVCHEYGVPLLLNGAYTVGRMPV--S- 186 (361)
T ss_pred CCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec---cHHHHHHHHHHcCCeEEEECCcccCCcCC--C-
Confidence 443 46899999999886421 2345888899999999764 56788899999999999999997433211 0
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.. +. ...++++|+||.++ ++.|+||+++.
T Consensus 187 --~~---~~-~~d~~~~s~~K~l~-~~~~~G~l~~~ 215 (361)
T cd06452 187 --GK---EL-GADFIVGSGHKSMA-ASAPIGVLATT 215 (361)
T ss_pred --HH---Hc-CCCEEEecCCcccc-CCCCeEEEEEC
Confidence 11 12 24588999999998 56699999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-20 Score=166.79 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=126.9
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH----HHHHHc
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP----NFFAAA 157 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~----~~~~~~ 157 (280)
+.+..-..+|++.++++... +..++ +++|++|+..+ +.+++.+||+|+++.+.|+... ..++..
T Consensus 53 r~~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a--l~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 120 (418)
T TIGR01326 53 RLMNPTTDVLEQRIAALEGG--------VAALA--VASGQAAITYA--ILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRL 120 (418)
T ss_pred CCCChhHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHHHHHc
Confidence 33444567899999998532 34455 99999999999 7788899999999999996543 345678
Q ss_pred CCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 158 GLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 158 G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
|++++.++. .|++.+++++.++++ +|++++|+||||.+.+ +++|+++|+++|+++|+|++|......
T Consensus 121 G~~v~~v~~-------~d~~~l~~~l~~~t~---~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~~ 187 (418)
T TIGR01326 121 GIEVRFVDP-------DDPEEFEKAIDENTK---AVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYLC 187 (418)
T ss_pred CcEEEEECC-------CCHHHHHHhcCcCCe---EEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhcC
Confidence 999888875 178999998876544 7888999999998876 667888999999999999999743221
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+ +. ...+++.|+||.++.+|+|+||+++.
T Consensus 188 --------~~l-~~-g~Divv~S~sK~l~g~G~~lGg~v~~ 218 (418)
T TIGR01326 188 --------RPI-DH-GADIVVHSATKYIGGHGTAIGGVIVD 218 (418)
T ss_pred --------Cch-hc-CCeEEEECccccccCCccceEEEEEe
Confidence 111 22 35689999999999999999999885
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-20 Score=165.61 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=124.0
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcC
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAG 158 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G 158 (280)
++......|++.+|++... +...+ +++|+.++..+ +...+.+||+|+++.|.|+.+...+ ...|
T Consensus 62 ~~~p~~~~Le~~lA~l~G~--------~~~~~--~~sG~~Ai~~~--l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G 129 (398)
T PRK07504 62 YSNPTVDMFEKRMCALEGA--------EDARA--TASGMAAVTAA--ILCQVKAGDHVVAARALFGSCRYVVETLLPRYG 129 (398)
T ss_pred CCCchHHHHHHHHHHHhCC--------CeeeE--ecCHHHHHHHH--HHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcC
Confidence 3445578899999998532 22234 77888999877 6777899999999999999765544 3568
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
++++.++. .|++.++++++++++ +|++++|+||||.+++ +++|.++|+++|+++|+|++|....+..
T Consensus 130 ~~v~~vd~-------~d~e~l~~ai~~~tk---lV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~ 196 (398)
T PRK07504 130 IESTLVDG-------LDLDNWEKAVRPNTK---VFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQK 196 (398)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCce---EEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccCC
Confidence 87777752 689999999876655 9999999999999987 5677888999999999999998665421
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ . +.+ .-+++.|+||.++.+|+|+|++++.
T Consensus 197 --~----~---~~g-aDivv~S~sK~l~g~g~~~GG~vv~ 226 (398)
T PRK07504 197 --P----L---ELG-AHIVVYSATKHIDGQGRCLGGVVLS 226 (398)
T ss_pred --c----h---hhC-CCEEEeeccccccCCccceEEEEEe
Confidence 1 1 222 2467999999999899999876654
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=164.52 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCCee
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGLAM 161 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~~~ 161 (280)
.-...|++.+++++.. +++++ |+||++|+.++ +.+++.+||+|+++.+.|..... .+...|+++
T Consensus 61 p~~~~le~~la~l~g~--------~~~v~--~ssG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v 128 (390)
T PRK08133 61 PTVTMFQERLAALEGA--------EACVA--TASGMAAILAV--VMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIET 128 (390)
T ss_pred hHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEE
Confidence 3466889999988522 45565 99999999998 77888999999999999977554 445689999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.++. .|.+.++++++++++ +|++++|+||||.+.+ +++|+++|+++|+++|+|++|....... +
T Consensus 129 ~~vd~-------~d~~~l~~~i~~~tk---lV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~--p 193 (390)
T PRK08133 129 TFVDL-------TDLDAWRAAVRPNTK---LFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ--P 193 (390)
T ss_pred EEECC-------CCHHHHHHhcCcCCe---EEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC--c
Confidence 98876 268899998876554 8889999999999985 6788899999999999999987654421 1
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. ..+. -+++.|+||.++.+|+|+|++++.
T Consensus 194 ----l---~~g~-Divv~S~sK~~~g~g~~~GG~vv~ 222 (390)
T PRK08133 194 ----L---KLGA-DVVIHSATKYLDGQGRVLGGAVVG 222 (390)
T ss_pred ----h---hhCC-cEEEeecceeecCCcceEeEEEEc
Confidence 1 1222 367999999999899999666553
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=162.61 Aligned_cols=163 Identities=15% Similarity=0.057 Sum_probs=122.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH----
Q 023599 81 EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA---- 156 (280)
Q Consensus 81 ~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~---- 156 (280)
++++......|+++++++.. .+++++ ++|+++|+.++ +.+++.+||+|+++.|+|......+..
T Consensus 46 ~R~~~p~~~~le~~lA~l~g--------~~~v~~--~~gg~~Ai~~~--l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~ 113 (382)
T TIGR02080 46 SRSGNPTRDLLQQALAELEG--------GAGAVV--TNTGMSAIHLV--TTALLGPDDLLVAPHDCYGGTYRLLNALAKK 113 (382)
T ss_pred cCCCCchHHHHHHHHHHHhC--------CCcEEE--EcCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 34455567889999999853 156776 99999999999 788899999999999999876554432
Q ss_pred cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 157 AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 157 ~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
.|+++..++. .|++.+++++.++++ +|++++|+||||.+++. ++|+++|+++++++|+|++|.....
T Consensus 114 ~~~~v~~~d~-------~d~~~l~~ai~~~tk---lV~l~~p~NPtG~~~dl---~~I~~la~~~g~~vvvD~a~~~~~~ 180 (382)
T TIGR02080 114 GCFRVLFVDQ-------GDEQALRAALAQKPK---LVLIETPSNPLLRVVDI---AKICHLAKAVGAVVVVDNTFLSPAL 180 (382)
T ss_pred cCeEEEEECC-------CCHHHHHHhcCcCce---EEEEECCCCCCCEecCH---HHHHHHHHHcCCEEEEECCCccccc
Confidence 2344443321 378999999876554 88999999999999875 5678889999999999999987654
Q ss_pred CcCCChhHHHHhhhcCCeEEEEeccccccc-ccccccceEEEE
Q 023599 237 NMDADALPVRMFVADGGECLVAQSYSKTMG-LYGERVGALSVV 278 (280)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RvG~~v~~ 278 (280)
.. + .. .+. -++++|+||.++ .+|+|.||+++.
T Consensus 181 ~~--p----l~---~ga-Divv~S~sK~l~G~~~~~~G~i~~~ 213 (382)
T TIGR02080 181 QN--P----LA---LGA-DLVLHSCTKYLNGHSDVIAGAVIAK 213 (382)
T ss_pred CC--c----hh---hCC-CEEEeecceeccCCCCceeEEEEeC
Confidence 21 1 11 112 278899999985 578899998763
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=161.78 Aligned_cols=163 Identities=15% Similarity=0.048 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh----hcCCCEEEEeCCCCCC----hHHHHHHcCC
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK----HYYQHTVYLSQPTYGN----HPNFFAAAGL 159 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~----~~~Gd~Vli~~P~y~~----~~~~~~~~G~ 159 (280)
.+++|+.+++++... .+++|++ |+|+++++.++ +.++ +.+||+|++++|.|+. +...++..|+
T Consensus 65 ~~~~r~~la~~~g~~-----~~~~i~~--~~~~t~~i~~~--~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~ 135 (401)
T PRK10874 65 YEAAREQVAQLLNAP-----DAKNIVW--TRGTTESINLV--AQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGA 135 (401)
T ss_pred HHHHHHHHHHHcCCC-----CCCEEEE--ECCHHHHHHHH--HHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCC
Confidence 567889999986432 3478888 99999999999 5554 4799999999999864 4555677899
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.++. ++++.+|++.+++.+.++++ ++++++|+||||.+++. ++|+++|+++|+++|+|++|.......
T Consensus 136 ~v~~v~~--~~~~~~d~~~l~~~i~~~t~---lv~i~~~~n~tG~~~~~---~~i~~l~~~~g~~~ivD~a~~~g~~~~- 206 (401)
T PRK10874 136 KVVKLPL--GADRLPDVDLLPELITPRTR---ILALGQMSNVTGGCPDL---ARAITLAHQAGMVVMVDGAQGAVHFPA- 206 (401)
T ss_pred EEEEEec--CCCCcCCHHHHHHhcCcCcE---EEEEeCCcccccCcCCH---HHHHHHHHHcCCEEEEECCcccccccC-
Confidence 9999998 33567899999999976554 88899999999999864 577888999999999999996543321
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ +. .. .--+++.|++|.||.+| +||+++.
T Consensus 207 -~---~~---~~-~~d~~~~s~~K~~gp~G--~G~l~~~ 235 (401)
T PRK10874 207 -D---VQ---AL-DIDFYAFSGHKLYGPTG--IGVLYGK 235 (401)
T ss_pred -C---ch---hc-CCCEEEEecccccCCCc--cEEEEEc
Confidence 1 11 11 13366799999998776 5888764
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=158.89 Aligned_cols=164 Identities=13% Similarity=0.042 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
...+++.+++++.. ++.++ +++|++++.++ +.+++.+||+|++++|.|..+...++..|+++++++.
T Consensus 48 ~~~l~~~la~~~~~--------~~~iv--~~sg~~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~- 114 (349)
T cd06454 48 HEELEEELAEFHGK--------EAALV--FSSGYAANDGV--LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH- 114 (349)
T ss_pred HHHHHHHHHHHhCC--------CCEEE--eccHHHHHHHH--HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-
Confidence 46788888887632 22343 66667888877 6677789999999999999888888889999887764
Q ss_pred cCCCCCcCHHHHHHHHhcCC--CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 168 DPKTNGLDFQGMLQDLGAAP--SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 168 ~~~~~~~d~~~l~~~~~~~~--~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
.|.+.+++.+.+.. .+.+++++++++||||...+ +++|+++|+++|+++|+|++|........... .
T Consensus 115 ------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~--~ 183 (349)
T cd06454 115 ------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRG--V 183 (349)
T ss_pred ------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCC--h
Confidence 47788888887531 34568888999999998765 67778999999999999999975433211111 1
Q ss_pred HHhh-hcCCeEEEEecccccccccccccceEEEE
Q 023599 246 RMFV-ADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 246 ~~~~-~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.... ......++++|+||.++.+| ||++..
T Consensus 184 ~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~ 214 (349)
T cd06454 184 EEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGS 214 (349)
T ss_pred hhhccccccCcEEEeechhhhcccC---CEEECC
Confidence 1111 22346899999999998654 988753
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=161.24 Aligned_cols=167 Identities=16% Similarity=0.085 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
...+++.+|+++.. +.+.+ ++|+++++..+ +.+++.+||+|++..+.|......++..|++++.++..
T Consensus 53 ~~~~~e~lA~~~g~--------~~~~i--~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~ 120 (370)
T TIGR02539 53 IHDFLEDLAEFLGM--------DEARV--THGAREGKFAV--MHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHT 120 (370)
T ss_pred HHHHHHHHHHHhCC--------CceEE--ECChHHHHHHH--HHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecC
Confidence 46788889888532 44556 89999999999 77888999999998888654446678899999999973
Q ss_pred cCCCCCcCHHHHHHHHhcCC----CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 168 DPKTNGLDFQGMLQDLGAAP----SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 168 ~~~~~~~d~~~l~~~~~~~~----~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
.+.++.+|++.+++++.+.+ .+..+|++++|+||||...+ +++|+++|+++|+++|+|++|....... +
T Consensus 121 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~~--~-- 193 (370)
T TIGR02539 121 GHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMPV--S-- 193 (370)
T ss_pred CcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcCC--C--
Confidence 23357899999999986421 23458888999999998765 5567889999999999999998753321 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
....+.+ ++++|+||.++ +|.|+||+++..
T Consensus 194 ----~~~~~~d-i~v~s~sK~~~-~~g~~G~l~~~~ 223 (370)
T TIGR02539 194 ----AKEIGAD-FIVGSGHKSMA-ASGPCGVLGMSE 223 (370)
T ss_pred ----HHHcCCC-EEEeeCccccc-CCCCEEEEEECH
Confidence 1122233 56799999998 678999998753
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=161.72 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHH--HhhcCCCEEEEeCCCCCC----hHHHHHHcCCee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL--AKHYYQHTVYLSQPTYGN----HPNFFAAAGLAM 161 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~--~~~~~Gd~Vli~~P~y~~----~~~~~~~~G~~~ 161 (280)
.+++|+++++++... ++++|++ |+|+++++.++++.+ ..+.+||+|+++++.|+. +...++..|+++
T Consensus 69 ~~~~r~~la~~~~~~-----~~~~v~~--t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v 141 (406)
T PRK09295 69 MENVRKQAALFINAR-----SAEELVF--VRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAEL 141 (406)
T ss_pred HHHHHHHHHHHcCcC-----CCCeEEE--eCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEE
Confidence 567889999987432 2478888 999999999883222 145799999999987754 455566789999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.++. + .++.+|++.+++++.++++ ++++++|+||||.+++ +++|+++|+++|+++++|++|.......
T Consensus 142 ~~v~~-~-~~~~~d~~~l~~~i~~~t~---lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~~~--- 210 (406)
T PRK09295 142 RVIPL-N-PDGTLQLETLPALFDERTR---LLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHHPV--- 210 (406)
T ss_pred EEEec-C-CCCCCCHHHHHHhcCCCcE---EEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCcccc---
Confidence 99998 3 3466899999999876544 8899999999999987 4667888999999999999997654321
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+.+.+. -+++.|++|.+|.+| +||+++..
T Consensus 211 -----~~~~~~~-D~~~~s~~K~~gp~G--~G~l~~~~ 240 (406)
T PRK09295 211 -----DVQALDC-DFYVFSGHKLYGPTG--IGILYVKE 240 (406)
T ss_pred -----CchhcCC-CEEEeehhhccCCCC--cEEEEEch
Confidence 1111222 367899999888665 79988753
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=162.91 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=122.7
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcC
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAG 158 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G 158 (280)
.+.+....|++.++++... ++.++ +++|++|+.++ +.+++.+||+|+++.|+|...... +...|
T Consensus 61 ~~~p~~~~le~~lA~l~g~--------~~~i~--~ssG~~Ai~~~--l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~G 128 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGA--------EAATA--FSTGMAAISNT--LYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMG 128 (398)
T ss_pred CCChHHHHHHHHHHHHhCC--------CeEEE--eCChHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCC
Confidence 4455567899999998532 33444 88889999999 777889999999999999875443 44678
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
+++..++. .|++.++++++++++ +|++++|+||||.+++ +++|+++|+++++++|+|++|.......
T Consensus 129 i~v~~vd~-------~d~e~l~~~i~~~tk---lV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~ 195 (398)
T PRK08249 129 VDVTLCET-------GDHEQIEAEIAKGCD---LLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN 195 (398)
T ss_pred eEEEEcCC-------CCHHHHHHhcCCCCe---EEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC
Confidence 88776653 589999999976554 8888999999999997 5567888999999999999998665421
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+ . ..+.. ++++|+||.++.+|.++|++++
T Consensus 196 --~---l----~~~~D-ivv~S~sK~l~g~~~~~gG~vv 224 (398)
T PRK08249 196 --P---L----ALGAD-LVIHSATKFLSGHADALGGVVC 224 (398)
T ss_pred --c---h----hhCCC-EEeccCceecCCCCCceEEEEE
Confidence 1 1 11222 6779999999888988865554
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=161.88 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=122.6
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----Hc
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AA 157 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~ 157 (280)
+.+......|+++++++.... .. ++ +++|++|+.++ +.+++.+||+|++++|+|......+. ..
T Consensus 57 r~~~p~~~~Le~~lA~~~g~~-------~~-i~--~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 124 (388)
T PRK07811 57 RTGNPTRTALEEQLAALEGGA-------YG-RA--FSSGMAATDCL--LRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRW 124 (388)
T ss_pred CCCCccHHHHHHHHHHHhCCC-------ce-EE--eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchHHHHHHHHhCcCC
Confidence 345567889999999996432 22 33 66779999999 78888999999999999986544433 35
Q ss_pred CCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 158 GLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 158 G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
|+++..++. .|++.+++++.++++ +|++++|+||||.+ .++++|+++|+++|+++|+|++|......
T Consensus 125 gi~~~~~d~-------~d~e~l~~~i~~~tk---lV~ie~p~NPtg~~---~dl~~I~~la~~~gi~lIvD~a~a~~~~~ 191 (388)
T PRK07811 125 GVEYTPVDL-------SDLDAVRAAITPRTK---LIWVETPTNPLLSI---TDIAALAELAHDAGAKVVVDNTFASPYLQ 191 (388)
T ss_pred CeEEEEeCC-------CCHHHHHHhcCcCCe---EEEEECCCCCccee---cCHHHHHHHHHHcCCEEEEECCCCccccC
Confidence 777666654 489999999876554 89999999999875 45778899999999999999999876442
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
. + + ..+.. +++.|+||.++.+| .+.||+++.
T Consensus 192 ~--p---~----~~gaD-ivv~S~sK~l~g~~~~~gG~vv~~ 223 (388)
T PRK07811 192 Q--P---L----ALGAD-VVVHSTTKYIGGHSDVVGGALVTN 223 (388)
T ss_pred C--c---h----hhCCc-EEEecCceeecCCCCcEEEEEEEC
Confidence 1 1 1 11222 88999999998765 567998864
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=162.23 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=121.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCC
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGL 159 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~ 159 (280)
+......|++.++++... +..++ +++|++|+.++ +.+++.+||+|+++.|.|..... .+...|+
T Consensus 63 ~~p~~~~le~~lA~l~g~--------~~~i~--~~sG~~Al~~~--l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~ 130 (403)
T PRK07503 63 SNPTLALLEQRMASLEGG--------EAAVA--LASGMGAITAT--LWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV 130 (403)
T ss_pred CCchHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence 444578899999998532 22344 77889999999 77778999999999999976433 3456898
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.++. .|++.+++++.++++ +|++++|+||||.+.+ +++|+++|+++|+++|+|++|.......
T Consensus 131 ~v~~vd~-------~d~~~l~~~i~~~tk---lV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~~- 196 (403)
T PRK07503 131 TVRHVDL-------TDPAALKAAISDKTR---MVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQR- 196 (403)
T ss_pred EEEEeCC-------CCHHHHHHhcCccCc---EEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 8888876 268999998876554 8888999999998876 6777888999999999999998654321
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccc-cccceEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSV 277 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~ 277 (280)
+ + +.+. -+++.|+||.++.+| .|.||++.
T Consensus 197 -~------l-~~g~-Di~v~S~tK~l~g~gd~~gG~v~~ 226 (403)
T PRK07503 197 -P------L-ELGA-DLVVHSATKYLGGHGDITAGLVVG 226 (403)
T ss_pred -c------h-hhCC-CEEEccccccccCCCceeEEEEEc
Confidence 1 1 1222 388999999999776 67787763
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=161.01 Aligned_cols=164 Identities=16% Similarity=0.094 Sum_probs=123.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH---
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA--- 156 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~--- 156 (280)
.++.+......|++++|++... +++++ ++||++++.++ +.+++.+||+|++++|+|+.....+..
T Consensus 46 Y~R~~~pt~~~L~~~lA~l~g~--------~~~i~--~~sg~~Ai~~~--l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~ 113 (386)
T PRK08045 46 YSRRGNPTRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAK 113 (386)
T ss_pred eeCCCCccHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHHcCCCCEEEEcCCCcHHHHHHHHHHHh
Confidence 4445555678999999998531 34666 99999999999 778889999999999999865444332
Q ss_pred -cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc
Q 023599 157 -AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV 235 (280)
Q Consensus 157 -~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~ 235 (280)
.|.++..++ ..|.+.+++++.++++ +|++++|+||||.+++ +++|.++|+++|+++|+|++|....
T Consensus 114 ~~gi~v~~vd-------~~d~e~l~~~l~~~tk---lV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~ 180 (386)
T PRK08045 114 RGCYRVLFVD-------QGDEQALRAALAEKPK---LVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPA 180 (386)
T ss_pred hCCeEEEEeC-------CCCHHHHHHhcccCCe---EEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccc
Confidence 333554443 2588999998876544 8888999999999997 4567888899999999999997764
Q ss_pred cCcCCChhHHHHhhhcCCeEEEEeccccccc-ccccccceEEEE
Q 023599 236 MNMDADALPVRMFVADGGECLVAQSYSKTMG-LYGERVGALSVV 278 (280)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RvG~~v~~ 278 (280)
... + + +.+.+ +++.|+||.++ ..+++.||+++.
T Consensus 181 ~~~--p------l-~~gaD-ivv~S~tK~l~G~~d~~~G~vi~~ 214 (386)
T PRK08045 181 LQN--P------L-ALGAD-LVLHSCTKYLNGHSDVVAGVVIAK 214 (386)
T ss_pred cCC--c------h-hhCCC-EEEeecceeccCCCCceeEEEEeC
Confidence 421 1 1 22234 78999999995 466889998763
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=159.51 Aligned_cols=214 Identities=12% Similarity=0.054 Sum_probs=138.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...|||..|.+.+.-++ ..+.+.++..+... .. . +....+..++++++++++....+ .+++++ ++|
T Consensus 37 dg~~~iD~~~g~~~~~lG~--~~p~v~~a~~~~~~-~~-~--~~~~~~~~~~~~~la~~l~~~~~----~~~v~~--~~g 104 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGH--CHPKLVEAIQEQAA-KL-I--HTSNLYYIEPQEELAEKLVELSG----MDKVFF--CNS 104 (396)
T ss_pred CCCEEEECCccHHhccCCC--CCHHHHHHHHHHHh-hc-c--ccccccCCHHHHHHHHHHHhhcC----CCEEEE--CCC
Confidence 4567899988875222232 22444444443331 11 0 11112235778888888765532 378888 999
Q ss_pred chhHHHHHHHHHHhhcCC-------CEEEEeCCCCCChHHHHHHcCCeee----EEEeecCCCC----CcCHHHHHHHHh
Q 023599 120 GSGSLRIGADFLAKHYYQ-------HTVYLSQPTYGNHPNFFAAAGLAMK----TYHYYDPKTN----GLDFQGMLQDLG 184 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~G-------d~Vli~~P~y~~~~~~~~~~G~~~~----~v~~~~~~~~----~~d~~~l~~~~~ 184 (280)
|++|+.++ +......+ ++|++.+++|.++.......+.... ..++ ..++ ..|++.+++.+.
T Consensus 105 g~eA~~~a--l~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~l~~~i~ 180 (396)
T PRK02627 105 GAEANEAA--IKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPL--VEGFIYVPFNDIEALKAAIT 180 (396)
T ss_pred cHHHHHHH--HHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCC--CCCceEeCCCCHHHHHHhcC
Confidence 99999999 44333222 6899999999877655544332211 1111 0111 128999999885
Q ss_pred cCCCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 185 AAPSGAIVLLQASGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
++ ..++++++++|||| .+++.+.+++|.++|++|++++|+||+|.+|.+... ..+.... +...+ +.+|||
T Consensus 181 ~~---~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~--~~~~~~~-~~~pd---i~t~sK 251 (396)
T PRK02627 181 DK---TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK--LFAYQHY-GIEPD---IMTLAK 251 (396)
T ss_pred CC---eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc--eeeehhc-CCCCC---EEEEcc
Confidence 43 34777788899999 688999999999999999999999999998865421 1111111 22234 347999
Q ss_pred cccccccccceEEEEc
Q 023599 264 TMGLYGERVGALSVVR 279 (280)
Q Consensus 264 ~~~~~G~RvG~~v~~~ 279 (280)
.++ +|+|+||+++..
T Consensus 252 ~~~-~G~rig~~~~~~ 266 (396)
T PRK02627 252 GLG-GGVPIGAVLAKE 266 (396)
T ss_pred hhh-CCcccEEEEEcH
Confidence 999 999999999753
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=162.13 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=118.6
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC----hHHHHHHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN----HPNFFAAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~----~~~~~~~~G~~~~ 162 (280)
....|++.++++... ++.++ +++|++++.++ +.+++.+||+|+++.|.|.. +...++..|.+++
T Consensus 61 ~~~~Le~~lA~l~g~-------~~~v~---~~sG~~Ai~~~--l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~ 128 (405)
T PRK08776 61 TRDLLGEALAELEGG-------AGGVI---TATGMGAINLV--LNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALI 128 (405)
T ss_pred HHHHHHHHHHHHhCC-------CceEE---EcCHHHHHHHH--HHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEE
Confidence 456788888887432 14443 77779999999 77889999999999999987 3444555687887
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. .|++.+++++.++++ ++++++|+||||.+. ++++|+++|+++|++||+|++|......
T Consensus 129 ~v~~-------~d~~~l~~~i~~~tk---lV~l~~P~NPtG~v~---dl~~I~~la~~~gi~vIvD~a~a~~~~~----- 190 (405)
T PRK08776 129 TADL-------TDPRSLADALAQSPK---LVLIETPSNPLLRIT---DLRFVIEAAHKVGALTVVDNTFLSPALQ----- 190 (405)
T ss_pred EECC-------CCHHHHHHhcCcCCe---EEEEECCCCCCCccC---CHHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence 7765 378999998876544 889999999999985 4778899999999999999999753321
Q ss_pred hHHHHhhhcCCeEEEEeccccccccc-ccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLY-GERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RvG~~v~~ 278 (280)
.++ +.+.. +++.|.||.++.+ ++..||++..
T Consensus 191 ~pl----~~gaD-ivv~S~tK~l~g~~~~~~G~vv~~ 222 (405)
T PRK08776 191 KPL----EFGAD-LVLHSTTKYINGHSDVVGGAVVAR 222 (405)
T ss_pred Ccc----cccCC-EEEecCceeecCCCCceEEEEEeC
Confidence 111 12223 7889999999766 5788988764
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-19 Score=159.35 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=122.2
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCC
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGL 159 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~ 159 (280)
+......|++.+|++... +..++ +++|++|+.++ +.+++.+||+|+++.|.|..... .+...|+
T Consensus 57 ~~p~~~~le~~lA~l~g~--------~~av~--~~sG~~Ai~~~--l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~ 124 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLEGT--------EAAVA--TSSGMGAIAAT--LLTILKAGDHLISDECLYGCTFALLEHALTKFGI 124 (391)
T ss_pred CCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence 334566799999999632 33444 88889999988 77788999999999998875433 3445788
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
++..+++ -|++.+++++.++++ +|++++|+||||.+.+ +++|+++|+++|+++|+|++|.......
T Consensus 125 ~~~~vd~-------~d~e~l~~~i~~~tk---lV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~- 190 (391)
T TIGR01328 125 QVDFINM-------AIPEEVKAHIKDNTK---IVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN- 190 (391)
T ss_pred EEEEECC-------CCHHHHHHhhccCCe---EEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC-
Confidence 8888876 178899998876554 8889999999999886 5677888999999999999998654421
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ + +.+.+ +++.|+||.++.+|.|+|.+++.
T Consensus 191 -~------~-~~g~D-ivv~S~sK~lgg~g~~~gG~v~~ 220 (391)
T TIGR01328 191 -P------V-ALGVD-VVVHSATKYIGGHGDVVAGLICG 220 (391)
T ss_pred -c------h-hcCCC-EEEccccccccCCCCceEEEEEc
Confidence 1 1 22233 77899999999999987555543
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-19 Score=158.91 Aligned_cols=164 Identities=15% Similarity=0.054 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHH-HhhcCCCEEEEeCCCCCChH----HHHHHcCCeee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL-AKHYYQHTVYLSQPTYGNHP----NFFAAAGLAMK 162 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~-~~~~~Gd~Vli~~P~y~~~~----~~~~~~G~~~~ 162 (280)
.+++|+.+++++... +++|++ +.|+++++..+...+ ..+.+||+|++.+|.|.... ..++..|++++
T Consensus 62 ~~~l~~~ia~~~~~~------~~~v~~--~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~ 133 (397)
T TIGR01976 62 VDDAREAVADLLNAD------PPEVVF--GANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVK 133 (397)
T ss_pred HHHHHHHHHHHcCCC------CCeEEE--eCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEE
Confidence 458889999886322 246776 999999988773222 23579999999999886543 44567899999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. +++++.+|++.+++++.++++ ++++++|+||||.+++ +++|+++|+++|+++++|+++..-...
T Consensus 134 ~~~~-~~~~~~~~~~~l~~~i~~~~~---lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~----- 201 (397)
T TIGR01976 134 WARV-DEATGELHPDDLASLLSPRTR---LVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYAPHGL----- 201 (397)
T ss_pred EEec-cccCCCcCHHHHHHhcCCCce---EEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhccccC-----
Confidence 9998 444577899999999976544 8999999999999886 667788999999999999987422111
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+.+.+.+++ +.|++|.+| .|+||+++.
T Consensus 202 ---~~~~~~~~d~~-~~s~~K~~g---~~~G~l~~~ 230 (397)
T TIGR01976 202 ---IDVQATGADFL-TCSAYKFFG---PHMGILWGR 230 (397)
T ss_pred ---CCHHHcCCCEE-EEechhhcC---CceEEEEEc
Confidence 11222333444 589999874 579998875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=156.22 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=134.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...|||..|...+.-|+ ..+...++..+.+..-......| +..-..+|.+.+++++ + .+++++ ++|
T Consensus 25 ~g~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~----g----~~~~~~--~~s 92 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHS----G----ADRVFF--CNS 92 (379)
T ss_pred CCCEEEEcCcchhhccCCC-CCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhC----C----CCEEEE--eCC
Confidence 3567899988754232332 22333344444443111111123 3333455666666653 2 157777 999
Q ss_pred chhHHHHHHHHHH-hhc----CCCEEEEeCCCCCChHHHHHHcCCeeeE----EEeecCCCCC--cCHHHHHHHHhcCCC
Q 023599 120 GSGSLRIGADFLA-KHY----YQHTVYLSQPTYGNHPNFFAAAGLAMKT----YHYYDPKTNG--LDFQGMLQDLGAAPS 188 (280)
Q Consensus 120 ~~~al~~~~~~~~-~~~----~Gd~Vli~~P~y~~~~~~~~~~G~~~~~----v~~~~~~~~~--~d~~~l~~~~~~~~~ 188 (280)
|++++.++.++.. ... +||+|++++|+|..+.......+..... .+...+..+. .|++.+++.+.++++
T Consensus 93 g~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 172 (379)
T TIGR00707 93 GAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETA 172 (379)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCee
Confidence 9999999844332 122 3799999999998887666655543321 2221111111 189999998865433
Q ss_pred CcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 189 GAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
+++++.++||+|.. ++.+++++|.++|+++++++|+||+|.+|.+.. ...+.. ......+++ +|||.++
T Consensus 173 ---~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g--~~~~~~-~~~~~~d~~---t~sK~~~- 242 (379)
T TIGR00707 173 ---AVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG--KFFAYE-HYGIEPDII---TLAKGLG- 242 (379)
T ss_pred ---EEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc--hhhhHH-hcCCCCCEE---EEccccc-
Confidence 66666566677754 699999999999999999999999999886642 111111 112233443 6899999
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
+|+|+||+++.
T Consensus 243 ~G~riG~~~~~ 253 (379)
T TIGR00707 243 GGVPIGATLAK 253 (379)
T ss_pred CCcccEEEEEc
Confidence 99999999874
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=156.80 Aligned_cols=166 Identities=17% Similarity=0.077 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHH--hhcCCCEEEEeCCCCCCh----HHHHHHcCCe
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLA--KHYYQHTVYLSQPTYGNH----PNFFAAAGLA 160 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~--~~~~Gd~Vli~~P~y~~~----~~~~~~~G~~ 160 (280)
+.+++|+.+++++... .++++++ |+|+++++.+++..+. .+.+||+|+++++.|... ....+..|++
T Consensus 63 ~~~~~r~~ia~~~~~~-----~~~~v~~--~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~ 135 (403)
T TIGR01979 63 AYEAVREKVAKFINAA-----SDEEIVF--TRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGAT 135 (403)
T ss_pred HHHHHHHHHHHHhCcC-----CCCeEEE--eCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcE
Confidence 4668999999986432 1367888 9999999998832221 257899999999987653 3455578999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.++. + +++.+|++.+++++.++++ ++++++++||||.+++ +++|.++|+++|+++++|++|.......
T Consensus 136 ~~~v~~-~-~~~~~~~~~l~~~i~~~~~---lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~~-- 205 (403)
T TIGR01979 136 LKFIPL-D-DDGTLDLDDLEKLLTEKTK---LVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHMPV-- 205 (403)
T ss_pred EEEEec-C-CCCCCCHHHHHHHhccCCe---EEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCcccc--
Confidence 999998 3 4567899999999976544 8889999999999998 5667888999999999999986543221
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+. ...+++.|++|.+|.+| +||+++.
T Consensus 206 ------~~~~~-~~d~~~~s~~K~~gp~G--~g~l~~~ 234 (403)
T TIGR01979 206 ------DVQAL-DCDFYVFSGHKMYGPTG--IGVLYGK 234 (403)
T ss_pred ------Ccccc-CCCEEEEecccccCCCC--ceEEEEc
Confidence 11112 23478899999988666 8888764
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-19 Score=158.33 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=120.4
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH----cC
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA----AG 158 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~----~G 158 (280)
++......|++.++++... ++.++ +++|+.|+.++ +.+++.+||+|+++.|.|......+.. .|
T Consensus 58 ~~~pt~~~Le~~lA~l~G~--------~~al~--~~sG~~Ai~~~--l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g 125 (386)
T PRK06767 58 LGNPTVKLFEERMAVLEGG--------EEALA--FGSGMAAISAT--LIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFM 125 (386)
T ss_pred CCCcchHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcC
Confidence 3555678999999999632 23344 77778899888 778889999999999999876655543 45
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
+++..++. .|++.+++++.++++ +|++++|+||||.+++ +++|.++|+++|+++|+|++|.......
T Consensus 126 i~~~~~~~-------~d~~~l~~~i~~~tk---lV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~ 192 (386)
T PRK06767 126 ITHSFCDM-------ETEADIENKIRPNTK---LIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQR 192 (386)
T ss_pred eEEEEeCC-------CCHHHHHHhhCcCce---EEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 54444433 478999998876554 8999999999999987 5667888899999999999997544321
Q ss_pred CCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~~ 278 (280)
+ + ..+.. +++.|+||.++.+|+|+ ||++..
T Consensus 193 --p------l-~~g~D-iv~~S~sK~l~g~g~~~gG~v~~~ 223 (386)
T PRK06767 193 --P------L-ELGCD-AVVHSATKYIGGHGDVVAGVTICK 223 (386)
T ss_pred --c------h-hcCCc-EEEecCcceecCCCCceeEEEEeC
Confidence 1 1 12222 67889999999899996 888764
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=157.49 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=123.5
Q ss_pred CCCH---HHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH---HHHHcCC
Q 023599 86 TGLP---EFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN---FFAAAGL 159 (280)
Q Consensus 86 ~G~~---~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~---~~~~~G~ 159 (280)
.|.+ .|++.++++..+ +..++ +++|++|+..+ +.+++.+||+|+++++.|+.+.. .+...|+
T Consensus 44 ~g~p~~~~lE~~la~leg~--------~~~v~--~ssG~~Ai~~~--l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~ 111 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGG--------VGTVC--FATGMAAIAAV--FLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGV 111 (397)
T ss_pred CCCHHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHcCCCCEEEECCCccccHHHHHHHHHhcCC
Confidence 3666 889999988432 22233 67779999999 77889999999999999987644 3556899
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc-cCc
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV-MNM 238 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~-~~~ 238 (280)
+++.++. .|++.+++++.++++ +|++++|+||||.+ .++++|+++|+++|+++|+|++|.... +++
T Consensus 112 ~v~~v~~-------~d~e~l~~~l~~~tk---lV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~~~~ 178 (397)
T PRK05939 112 EVTMVDA-------TDVQNVAAAIRPNTR---MVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWLFRP 178 (397)
T ss_pred EEEEECC-------CCHHHHHHhCCCCCe---EEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccccCc
Confidence 9988876 378999999876554 88889999999977 568899999999999999999985432 221
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. .. ..-+++.|+||.++.+|.++|++++.
T Consensus 179 -------~---~~-gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 179 -------K---DV-GASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred -------c---cc-CCEEEEecCeecccCCCCeEEEEEec
Confidence 1 11 24588999999999999999998774
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=162.21 Aligned_cols=212 Identities=12% Similarity=0.031 Sum_probs=143.3
Q ss_pred CCCeeEeecceeecCCC-CccchHHHHHHHHHHhcc-CCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 41 SPMKLNLGFGVYRTEEG-KPLLLNAVRQAEQLLVND-LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
..+.+||+.-+++-... .+.+.+.+.++.++.... ......|+...+..+|++++|+++.. ++.+++ ++
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-------~~ai~~--~~ 169 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-------PAAIVF--GM 169 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-------CcEEEE--CC
Confidence 35789999888754432 123345555555554311 12233477778899999999999742 255554 55
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc-------C---CC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA-------A---PS 188 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~---~~ 188 (280)
|..+...+ +.+++.+||.|++.+|+|..+...++..|++++.++. + |.+.+++.+++ + +.
T Consensus 170 -G~~an~~~--i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~-~------d~~~le~~l~~~i~~~~p~t~~p~ 239 (489)
T PLN02483 170 -GYATNSTI--IPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQH-N------TPSHLEEVLREQIAEGQPRTHRPW 239 (489)
T ss_pred -HHHHHHHH--HHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeC-C------CHHHHHHHHHhhhhccccccccCC
Confidence 45555555 6667899999999999999999999999999999986 1 45555555432 1 11
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhhcCCeEEEEecccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
+++++++....|++|.+. ++++|+++|++++++||+||+|........ ........+ +..+..|+++||||.||+
T Consensus 240 ~k~livve~v~s~~G~~~---~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v-~~~~~dI~~~SfSKs~g~ 315 (489)
T PLN02483 240 KKIIVIVEGIYSMEGELC---KLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGV-DPADVDIMMGTFTKSFGS 315 (489)
T ss_pred ceEEEEECCCCCCCCccc---CHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCC-CcccCcEEEEecchhccc
Confidence 234666666669999776 467778999999999999999975443211 111111121 123467999999999998
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
+| ||++..
T Consensus 316 ~G---G~i~~~ 323 (489)
T PLN02483 316 CG---GYIAGS 323 (489)
T ss_pred Cc---eEEEcC
Confidence 77 998864
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=155.53 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=123.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHH
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFA 155 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~ 155 (280)
+..++......|++.++++.... ..++ ++||++|+.++ + .++.+||+|++++|.|+.... .++
T Consensus 46 y~r~~~pt~~~le~~la~l~g~~--------~~~~--~~sG~~ai~~~--~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~ 112 (366)
T PRK08247 46 YSRTGNPTRGVLEQAIADLEGGD--------QGFA--CSSGMAAIQLV--M-SLFRSGDELIVSSDLYGGTYRLFEEHWK 112 (366)
T ss_pred ccCCCCchHHHHHHHHHHHhCCC--------cEEE--EcCHHHHHHHH--H-HHhCCCCEEEEecCCcCcHHHHHHHHhh
Confidence 33445556788999999995332 2234 88899999876 4 567899999999999987543 445
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV 235 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~ 235 (280)
..|++++.++. .|++.+++++.++++ +|++++|+|||| +..++++|+++|+++|+++|+|++|....
T Consensus 113 ~~G~~v~~vd~-------~d~~~l~~~i~~~tk---lv~le~P~NP~~---~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 113 KWNVRFVYVNT-------ASLKAIEQAITPNTK---AIFIETPTNPLM---QETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred ccCceEEEECC-------CCHHHHHHhcccCce---EEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 68988888875 378999999876554 899999999985 67889999999999999999999995433
Q ss_pred cCcCCChhHHHHhhhcCCeEEEEeccccccccc-ccccceEEEE
Q 023599 236 MNMDADALPVRMFVADGGECLVAQSYSKTMGLY-GERVGALSVV 278 (280)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RvG~~v~~ 278 (280)
... + + + ....|+++|+||.++.+ +++.||++..
T Consensus 180 ~~~--p------~-~-~g~di~i~S~sK~~~g~~d~~~G~iv~~ 213 (366)
T PRK08247 180 LQR--P------L-E-EGADIVIHSATKYLGGHNDVLAGLVVAK 213 (366)
T ss_pred ccC--c------h-h-cCCcEEEeecceeccCCCceeeeEEecC
Confidence 221 0 1 1 13458999999999743 5699998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=161.57 Aligned_cols=208 Identities=10% Similarity=-0.033 Sum_probs=142.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCC-----CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEE
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSA-----DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVST 114 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~ 114 (280)
.+.+.+||+.+.+.+.. .+++..+++.+.+.+ -+. ...|.+..+..+|++++++++.. ++.+++
T Consensus 107 ~G~~~id~~s~~~lgl~---~~~~i~ea~~~al~~-~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-------~~~i~~ 175 (481)
T PLN02822 107 NGKDVVNFASANYLGLI---GNEKIKESCTSALEK-YGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-------PDSILY 175 (481)
T ss_pred CCceEEEeECCCcCCCC---CCHHHHHHHHHHHHH-hCCCCcccCccccCHHHHHHHHHHHHHHhCC-------CCEEEE
Confidence 45688999999874443 445555555555542 111 11356666789999999999742 356665
Q ss_pred eecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc---C---CC
Q 023599 115 VQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA---A---PS 188 (280)
Q Consensus 115 v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~---~---~~ 188 (280)
++|++ ++..+ +.+++++||.|++....+..+...++..|.+++.++.. |.+.++..+++ . ++
T Consensus 176 --s~G~~-a~~sa--i~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~ 243 (481)
T PLN02822 176 --SYGLS-TIFSV--IPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRKK 243 (481)
T ss_pred --CCHHH-HHHHH--HHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhcccC
Confidence 77766 56666 67888999999988776666666777788888888762 33444444331 1 11
Q ss_pred C-cEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc--CCeEEEEecccccc
Q 023599 189 G-AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD--GGECLVAQSYSKTM 265 (280)
Q Consensus 189 ~-~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~ 265 (280)
+ .++++++.++|+||.+.+ +++|+++|++|++++|+||+|....++.. ... +....+. ....|+++||||.|
T Consensus 244 ~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~-G~G-~~e~~~v~~~~~dii~~s~sKal 318 (481)
T PLN02822 244 KLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKS-GRG-LSEHFGVPIEKIDIITAAMGHAL 318 (481)
T ss_pred CCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC-CCC-hHHHcCCCCCCCeEEEecchhhh
Confidence 2 258888899999999998 67789999999999999999997766421 110 1111111 23568899999999
Q ss_pred cccccccceEEEE
Q 023599 266 GLYGERVGALSVV 278 (280)
Q Consensus 266 ~~~G~RvG~~v~~ 278 (280)
|++| ||++..
T Consensus 319 g~~G---G~i~g~ 328 (481)
T PLN02822 319 ATEG---GFCTGS 328 (481)
T ss_pred hhCC---eEEEcC
Confidence 9999 998864
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-19 Score=157.75 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=115.9
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCC----ChHHHHHHcC
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYG----NHPNFFAAAG 158 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~----~~~~~~~~~G 158 (280)
.......+|+++++++.... ..++ +++|++++..+ +.+++.+||+|+++.|.|. .+...++..|
T Consensus 42 ~~~p~~~~L~~~lA~l~g~~-------~~v~---~~sG~~ai~~~--l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G 109 (376)
T PRK06460 42 EANPTVLELTKKIVELENAE-------MGVA---FSSGMGAISTT--ALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWG 109 (376)
T ss_pred CCCccHHHHHHHHHHHhCCC-------cEEE---eCCHHHHHHHH--HHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhC
Confidence 34557789999999996332 3333 56668999988 7788899999999987664 3456677889
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
+++..++. + +.+.+++.+++++ ++|++++||||||.+++.+ +|+++|+++|+++|+|++|......
T Consensus 110 ~~v~~~~~-~------~~~~l~~~~~~~t---klV~l~sp~NPtG~v~d~~---~I~~la~~~g~~vivDea~~~~~~~- 175 (376)
T PRK06460 110 VNVDASNP-G------SDNIIEKAKSKRY---DVVFVENITNPLLRVVDIT---ELSKVCKENGSILIVDATFSTPINQ- 175 (376)
T ss_pred cEEEEECC-C------CHHHHHHhcCCCc---eEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCcCccccC-
Confidence 99888775 2 2233444333333 4888999999999999876 5688889999999999999764321
Q ss_pred CCChhHHHHhhhcCCeEEEEeccccccccc-ccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLY-GERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RvG~~v~~ 278 (280)
..+ .. ...+++.|+||.|+.+ |.|+||++..
T Consensus 176 -------~~l-~~-~~divv~S~sK~l~G~~~~~~G~~~~~ 207 (376)
T PRK06460 176 -------KPL-EL-GADIVVHSASKFLAGHNDVIAGLAAGY 207 (376)
T ss_pred -------Chh-hc-CCCEEEeecceeccCCCCceEEEEecC
Confidence 111 12 2458899999998623 3679998753
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=156.67 Aligned_cols=164 Identities=14% Similarity=0.073 Sum_probs=125.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----H
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----A 155 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~ 155 (280)
++..+......|++++|++.. .+++++ ++||++|+.++ +.+++.+||+|+++.|+|+.....+ .
T Consensus 47 Y~R~~npt~~~Le~~lA~leg--------~e~ivv--t~gg~~Ai~~~--l~all~~Gd~Il~~~~~y~~~~~~~~~~~~ 114 (388)
T PRK08861 47 YTRSGNPNRGLLEQTLSELES--------GKGAVV--TNCGTSALNLW--VSALLGPDDLIVAPHDCYGGTYRLFNTRAN 114 (388)
T ss_pred ccCCCCchHHHHHHHHHHHhC--------CCeEEE--ECCHHHHHHHH--HHHHcCCCCEEEEcCCchHHHHHHHHHHHh
Confidence 344455567889999999953 267777 99999999999 7788899999999999998644433 2
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV 235 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~ 235 (280)
..|+++..++. .|++.+++++.++++ +|++++|+||||.+++. ++|.++|+++++++|+|++|....
T Consensus 115 ~~gi~v~~vd~-------~d~e~l~~~i~~~tk---lV~lesP~NPtG~v~dl---~~I~~la~~~gi~vIvDea~~~~~ 181 (388)
T PRK08861 115 KGDFKVQFVDQ-------SDAAALDAALAKKPK---LILLETPSNPLVRVVDI---AELCQKAKAVGALVAVDNTFLTPV 181 (388)
T ss_pred cCCeEEEEECC-------CCHHHHHHhcCcCCe---EEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCccccc
Confidence 34667766653 478999998876554 89999999999999985 466888999999999999998765
Q ss_pred cCcCCChhHHHHhhhcCCeEEEEeccccccccc-ccccceEEEE
Q 023599 236 MNMDADALPVRMFVADGGECLVAQSYSKTMGLY-GERVGALSVV 278 (280)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RvG~~v~~ 278 (280)
+.. + . +.+.. +++.|++|.++-+ +++.|++++.
T Consensus 182 ~~~--p----l---~~GaD-ivv~S~tK~l~G~~d~~gG~i~~~ 215 (388)
T PRK08861 182 LQK--P----L---ELGAD-FVIHSTTKYINGHSDVIGGVLITK 215 (388)
T ss_pred cCC--C----c---ccCCC-EEEeecceeccCCCcceeEEEEec
Confidence 421 1 1 12233 6799999999754 4788988753
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=156.15 Aligned_cols=162 Identities=16% Similarity=0.137 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh----cCCCEEEEeCCCCCC---hHHHHHHcCCe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH----YYQHTVYLSQPTYGN---HPNFFAAAGLA 160 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~----~~Gd~Vli~~P~y~~---~~~~~~~~G~~ 160 (280)
.+++|+.+++++.. .+++|++ |+|+++++.++ +.+++ .+||+|++....|+. +...++..|++
T Consensus 45 ~~~~r~~la~~~g~------~~~~i~~--~~g~t~a~~~~--~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~ 114 (381)
T PRK02948 45 LQVCRKTFAEMIGG------EEQGIYF--TSGGTESNYLA--IQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYT 114 (381)
T ss_pred HHHHHHHHHHHhCC------CCCeEEE--eCcHHHHHHHH--HHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCE
Confidence 45678888888632 2478887 99999999988 55554 578999998866554 44456678999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.+++ + +++.+|++.+++.+.+++ .++++++|+||||.+++. ++|.++|+++|+++++|+++ .+...+
T Consensus 115 v~~v~~-~-~~~~~d~~~l~~~l~~~~---~lv~~~~~~n~tG~~~~~---~~I~~l~~~~~~~vivD~~~-~~g~~~-- 183 (381)
T PRK02948 115 VTEIPV-D-KSGLIRLVDLERAITPDT---VLASIQHANSEIGTIQPI---AEIGALLKKYNVLFHSDCVQ-TFGKLP-- 183 (381)
T ss_pred EEEEee-C-CCCCCCHHHHHHhcCCCC---EEEEEECCcCCcEeehhH---HHHHHHHHHcCCEEEEEChh-hccccc--
Confidence 999998 3 346789999999886554 389999999999999874 56788999999999999654 333211
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+.+. ..-+++.|++|.+|.+| +|++++.
T Consensus 184 -----~~~~~~-~~d~~~~s~~K~~gp~G--~G~l~~~ 213 (381)
T PRK02948 184 -----IDVFEM-GIDSLSVSAHKIYGPKG--VGAVYIN 213 (381)
T ss_pred -----cCcccC-CCCEEEecHHhcCCCCc--EEEEEEc
Confidence 011112 24466899999999888 7888764
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=156.77 Aligned_cols=203 Identities=13% Similarity=0.126 Sum_probs=141.6
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC-----CCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP-----ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-----~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+++|+.|.+ +++.| +.+.++..+. . . ..+|.+ ..|.+++++++++++....+. ..+++.+ +
T Consensus 21 ~~~~l~~g~~----~~~~p-~~~~~~~~~~-~--~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~--~ 87 (398)
T cd00613 21 SMSFLGSGTY----KHNPP-AVIKRNILEN-E--F-YTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASL--Q 87 (398)
T ss_pred Cccccccccc----CCcCc-HHHHHHhccc-c--C-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--Cccceec--c
Confidence 4599999996 33333 3333333332 1 1 234555 689999999999997655432 2346665 5
Q ss_pred c-cchhHHHHHHHHHHhhcC--CCEEEEeCCCCCChHHHHHHcC----CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCc
Q 023599 118 L-SGSGSLRIGADFLAKHYY--QHTVYLSQPTYGNHPNFFAAAG----LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGA 190 (280)
Q Consensus 118 ~-g~~~al~~~~~~~~~~~~--Gd~Vli~~P~y~~~~~~~~~~G----~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~ 190 (280)
. |++++..++ +...+.+ ||+|++++|.|+.+...+...| ++++.++. ++++.+|++.+++++.+++
T Consensus 88 ~~g~~~~~~~~--~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~t--- 160 (398)
T cd00613 88 DEATAAAEAAG--LAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS--DEGGTVDLEALKEEVSEEV--- 160 (398)
T ss_pred CchHHHHHHHH--HHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc--CCCCCcCHHHHHHhcCCCe---
Confidence 5 444454444 3444555 9999999999999988888777 89998987 2345789999999886553
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc--
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY-- 268 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-- 268 (280)
++|++++|+ |||.+. +.+++|+++|+++|+++|+|+++....... .. +....-+++.|++|.+ +|
T Consensus 161 ~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~--~~-------~~~~~d~~~~s~~K~~-~p~g 227 (398)
T cd00613 161 AALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGLK--PP-------GEYGADIVVGNLQKTG-VPHG 227 (398)
T ss_pred EEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCCC--Ch-------HHcCCCEEEeeccccC-CCCC
Confidence 377777775 999883 446999999999999999999875433211 00 1113457899999998 66
Q ss_pred --ccccceEEEE
Q 023599 269 --GERVGALSVV 278 (280)
Q Consensus 269 --G~RvG~~v~~ 278 (280)
|+|+||+++.
T Consensus 228 ~Ggp~~g~l~~~ 239 (398)
T cd00613 228 GGGPGAGFFAVK 239 (398)
T ss_pred CCCCceeEEEEh
Confidence 8999999875
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=148.33 Aligned_cols=187 Identities=21% Similarity=0.259 Sum_probs=122.1
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh---h-cC----------CCEEEEe
Q 023599 79 DKEY-LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK---H-YY----------QHTVYLS 143 (280)
Q Consensus 79 ~~~y-~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~---~-~~----------Gd~Vli~ 143 (280)
..+| +...|++++|+-+++.+. +.++++++ ||+.++++.-+.+.. . .+ .-+.++|
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~llg------v~~~~viv----~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP 130 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELLG------VPPENVIV----GGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP 130 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHHT------S-GGGEEE-----SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred ccCCCCccCChHHHHHHHHHHhC------CCHHHEEE----eccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence 4679 889999999999999973 34588865 555566554222221 1 11 2479999
Q ss_pred CCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHH-HHhCC
Q 023599 144 QPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQL-MRLKR 222 (280)
Q Consensus 144 ~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~-~~~~~ 222 (280)
.|+|..|..+++.+|++.+.|||. ++ ++|+|.+++++.+.+..+.+++++..+||||.++|.+..++++++ +...+
T Consensus 131 vPGYDRHFai~E~~Giemi~VpM~-~d--GPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~D 207 (425)
T PF12897_consen 131 VPGYDRHFAITEHFGIEMIPVPMT-ED--GPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPD 207 (425)
T ss_dssp ES--HHHHHHHHHCT-EEEEEEEE-TT--EE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT
T ss_pred CCCchHHHHHHHhhCcEEEecCCC-CC--CCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcC
Confidence 999999999999999999999994 44 799999999998877778899999999999999999999999987 44589
Q ss_pred ceeEEcccCCCccc--CcCCCh-hHHH-Hhhh--cCCeEEEEecccccccccccccceEEEEc
Q 023599 223 LLPFFDCAYQGFVM--NMDADA-LPVR-MFVA--DGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 223 ~~ii~De~y~~~~~--~~~~~~-~~~~-~~~~--~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
..|+.|++|.--.. +..... ..+. .+.. ..++++.+.|+||.- .||-+|+++..+.
T Consensus 208 FRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~ 269 (425)
T PF12897_consen 208 FRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAASE 269 (425)
T ss_dssp -EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE-H
T ss_pred eEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecCH
Confidence 99999999965544 322121 1222 2222 346999999999987 5999999988753
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=156.67 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=123.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH----HHHHHcCCe
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP----NFFAAAGLA 160 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~----~~~~~~G~~ 160 (280)
......|.+.++++... +..++ ++||++|+.++ +.+++.+||+|+++.+.|+... ..++..|++
T Consensus 63 ~p~~~~Le~~lA~leg~--------~~al~--~~sG~~Ai~~a--l~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~ 130 (431)
T PRK08248 63 NPTTDVFEKRIAALEGG--------IGALA--VSSGQAAITYS--ILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGIT 130 (431)
T ss_pred CchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEE
Confidence 33456788889988532 34455 99999999999 8888899999999999997643 345568999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.++. .|++.+++++.++++ +|++++|+||||.+++. ++|+++|+++++++|+|++|..-..
T Consensus 131 v~~vd~-------~d~e~l~~ai~~~tk---lV~l~sp~NPtG~v~di---~~I~~la~~~gi~vIvD~t~a~~~~---- 193 (431)
T PRK08248 131 VKFVDP-------SDPENFEAAITDKTK---ALFAETIGNPKGDVLDI---EAVAAIAHEHGIPLIVDNTFASPYL---- 193 (431)
T ss_pred EEEECC-------CCHHHHHHhcCCCCe---EEEEECCCCCCCcccCH---HHHHHHHHHcCCEEEEeCCCCcccc----
Confidence 988876 378999999876544 78888999999999975 5778899999999999999863211
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. ..+ +.+ .-+++.|++|.++.+|.++|++++.
T Consensus 194 -~---~pl-~~g-aDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 194 -L---RPI-EHG-ADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred -C---Chh-HcC-CCEEEEcCccccCCCCCceEEEEEe
Confidence 1 111 232 3367899999999999999998874
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=155.19 Aligned_cols=166 Identities=16% Similarity=0.066 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHH--hhcCCCEEEEeCCCCCC----hHHHHHHcCCee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLA--KHYYQHTVYLSQPTYGN----HPNFFAAAGLAM 161 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~--~~~~Gd~Vli~~P~y~~----~~~~~~~~G~~~ 161 (280)
.+++|+++++++... .+++|++ |.|+++++..+.+.+. .+.+||+|+++++.|+. +...++..|+++
T Consensus 78 ~~~~r~~la~~~~~~-----~~~~v~~--t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v 150 (424)
T PLN02855 78 YELARKKVAAFINAS-----TSREIVF--TRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVL 150 (424)
T ss_pred HHHHHHHHHHHcCCC-----CCCEEEE--eCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEE
Confidence 468899999987432 1368888 9999999999833221 35789999999997764 445556789999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.++. +. ++.+|++.+++.+.++++ ++++++++||||.+++. ++|+++|+++|+++++|++|..-...
T Consensus 151 ~~v~~-~~-~~~~~~~~l~~~i~~~t~---lv~i~~~~n~tG~~~~~---~~I~~l~~~~g~~vivD~a~~~g~~~---- 218 (424)
T PLN02855 151 KFVGL-TP-DEVLDVEQLKELLSEKTK---LVATHHVSNVLGSILPV---EDIVHWAHAVGAKVLVDACQSVPHMP---- 218 (424)
T ss_pred EEEec-CC-CCCcCHHHHHHHhccCce---EEEEeCccccccccCCH---HHHHHHHHHcCCEEEEEhhhhcCCcC----
Confidence 99998 33 345899999999976544 88999999999999985 56788899999999999998532211
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
..+.+.+.+ +++.|++|.+|.+| +||+++..
T Consensus 219 ----~~~~~~~~d-~~~~s~~K~~gp~G--~G~l~~~~ 249 (424)
T PLN02855 219 ----VDVQTLGAD-FLVASSHKMCGPTG--IGFLWGKS 249 (424)
T ss_pred ----CCchhcCCC-EEEeecccccCCCc--cEEEEEch
Confidence 111122223 56999999887555 89998753
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=153.74 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc---CCCEEEEeCCCCCCh----HHHHHHcCCe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY---YQHTVYLSQPTYGNH----PNFFAAAGLA 160 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~---~Gd~Vli~~P~y~~~----~~~~~~~G~~ 160 (280)
..++|+.+++++... +++++++ |+|+++++.++ +.++.. +||+|++++++|... ....+..|++
T Consensus 45 ~~~~~~~la~~~~~~-----~~~~v~~--~~g~t~a~~~~--~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~ 115 (373)
T cd06453 45 YEAAREKVARFINAP-----SPDEIIF--TRNTTEAINLV--AYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAK 115 (373)
T ss_pred HHHHHHHHHHHhCCC-----CCCeEEE--eCCHHHHHHHH--HHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcE
Confidence 467889999887432 1367877 99999999999 667666 899999999999764 3344567999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.++. + +++.+|++.+++.+.++++ ++++++++||||.+.+. ++|.++|++++++|++|++|.......
T Consensus 116 ~~~v~~-~-~~~~~d~~~l~~~l~~~~~---~v~~~~~~~~tG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~~-- 185 (373)
T cd06453 116 LKVVPV-D-DDGQLDLEALEKLLTERTK---LVAVTHVSNVLGTINPV---KEIGEIAHEAGVPVLVDGAQSAGHMPV-- 185 (373)
T ss_pred EEEeec-C-CCCCcCHHHHHHHhcCCce---EEEEeCcccccCCcCCH---HHHHHHHHHcCCEEEEEhhhhcCceee--
Confidence 999998 3 4567999999999976543 88899999999999875 567888999999999999986433211
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+...+.. +++.|+.|.++. .++||+++.
T Consensus 186 ------~~~~~~~d-~~~~s~~K~~~~--~g~g~~~~~ 214 (373)
T cd06453 186 ------DVQDLGCD-FLAFSGHKMLGP--TGIGVLYGK 214 (373)
T ss_pred ------eccccCCC-EEEeccccccCC--CCcEEEEEc
Confidence 01111223 456788899984 678998875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=151.18 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEe---CCCCCChHHHHHHcCCeeeEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLS---QPTYGNHPNFFAAAGLAMKTY 164 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~---~P~y~~~~~~~~~~G~~~~~v 164 (280)
..+|++.+|+++. .+++++++ ++||.+++..+ +.+++.+||+|+++ .|+|..|...++..|+++..+
T Consensus 56 ~~~Le~~lA~~~g------~~~e~ilv--~~gg~~a~~~~--~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~ 125 (346)
T TIGR03576 56 EEKVQELGREHLG------GPEEKILV--FNRTSSAILAT--ILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFES 125 (346)
T ss_pred HHHHHHHHHHHcC------CCcceEEE--ECCHHHHHHHH--HHHhCCCCCEEEECCCCCCCchhHHHHHHHcCCEEecc
Confidence 4556677777642 23588888 99999999999 88889999999975 468888888888889875322
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
.+++.++. . ++ ..++++ +++||+|.+++.+++++|+++|+++++++|+||+|..+..... ...+
T Consensus 126 ---------~~l~~l~~-~-~~---~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~-~~~~ 189 (346)
T TIGR03576 126 ---------DELSELKK-I-DG---TSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLY-GQPP 189 (346)
T ss_pred ---------CCHHHHhh-C-cC---ceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccC-CCCC
Confidence 13444332 1 22 235555 4579999999999999999999999999999999998764211 1111
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.. ..+.+ ++++|||| +++|+|+||+++..
T Consensus 190 ~~---~~~~d-ivv~s~SK--alaG~r~G~v~~~~ 218 (346)
T TIGR03576 190 AL---DLGAD-LVVTSTDK--LMDGPRGGLLAGRK 218 (346)
T ss_pred HH---HcCCc-EEEeccch--hccccceEEEEeCH
Confidence 11 22234 56779999 57899999998753
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=155.27 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=122.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH----cCCe
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA----AGLA 160 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~----~G~~ 160 (280)
......|++.++++... +..++ +++|++|+.++ +.+++.+||+|+++.+.|......+.. .|++
T Consensus 57 ~pt~~~Le~~lA~l~g~--------~~~l~--~ssG~~Ai~~a--l~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~ 124 (425)
T PRK06084 57 NPTNDVLEQRVAALEGG--------VGALA--VASGMAAITYA--IQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIE 124 (425)
T ss_pred CchHHHHHHHHHHHhCC--------CceeE--ehhHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence 34456899999998532 33344 88999999999 788889999999999999866555543 4555
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
+.+++. .|++.+++++.++++ +|++++|+||||.+++ +++|+++|+++++++|+|++|......
T Consensus 125 v~~~d~-------~d~e~le~ai~~~tk---lV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~--- 188 (425)
T PRK06084 125 TRFAAH-------DDIAALEALIDERTK---AVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC--- 188 (425)
T ss_pred EEEECC-------CCHHHHHHHhccCCc---EEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC---
Confidence 555543 489999999977654 8888999999999997 577788999999999999999754331
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+ +.+. -+++.|+||.++.+|.++|.+++.
T Consensus 189 -----~p~-~~ga-Divv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 189 -----RPF-EHGA-DIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred -----Chh-hcCC-CEEEECchhcccccccceeEEEEe
Confidence 111 2222 278999999999999999998875
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=152.45 Aligned_cols=209 Identities=16% Similarity=0.048 Sum_probs=141.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCC-CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS-ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
+...++|+..+|++....|...+++.++.++...... ....+.......+|++.+++++.. +.+++ ++|
T Consensus 53 g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--------~~~~~--~~s 122 (407)
T PRK07179 53 GPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF--------ESCLL--CQS 122 (407)
T ss_pred CCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC--------CcEEE--ECC
Confidence 4567899888886665444444444443333210010 111122222356788999998621 44555 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
|++|+.++ +.++..+||.|++..+.+......++..|.+++.++. .|++.+++++++++ +.+|++++++
T Consensus 123 G~~An~~~--l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~--~~lV~v~~v~ 191 (407)
T PRK07179 123 GWAANVGL--LQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERHG--PGIIVVDSVY 191 (407)
T ss_pred HHHHHHHH--HHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhcC--CeEEEECCCC
Confidence 99999998 7778889999999988887777667777877665543 48999999987542 3488889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe-EEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE-CLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+.+ +++|.++|+++|+++|+||+|.....+.. ....+..+ +...+ .+++.|+||.++ .|+||+++.
T Consensus 192 n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~-g~g~~~~~-~~~~~vdi~~~S~sK~~g---~~~G~l~~~ 263 (407)
T PRK07179 192 STTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQ-GAGLVAEL-GLTSRVHFITASLAKAFA---GRAGIITCP 263 (407)
T ss_pred CCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCC-CCchHHhc-CCCCCCCEEEeechHhhh---ccCeEEEeC
Confidence 99999998 46778899999999999999975443211 11111121 22223 378999999986 379998864
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=150.67 Aligned_cols=168 Identities=11% Similarity=0.017 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYH 165 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~ 165 (280)
....++|+.+|+++.. +++++ ++|+++++.++ +.+++.+||+|+++.++|......++..|++++.++
T Consensus 63 ~~~~~l~~~lA~~~g~--------~~~~~--~~g~t~a~~~a--l~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~ 130 (387)
T PRK09331 63 PPIADFHEDLAEFLGM--------DEARV--THGAREGKFAV--MHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVP 130 (387)
T ss_pred hHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEe
Confidence 3478999999999632 45666 99999999999 788889999999999988776667788999999998
Q ss_pred eecCCCCCcCHHHHHHHHhcC----CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 166 YYDPKTNGLDFQGMLQDLGAA----PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~----~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
...++++.+|++.+++++.+. .++..+|++++|+||||...+ +++|+++|+++|+++++|++|..-.... +
T Consensus 131 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~~~~--~ 205 (387)
T PRK09331 131 KTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGRMPV--D 205 (387)
T ss_pred CccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCCcCC--C
Confidence 721345779999999998753 124568889999999997654 7778899999999999999997543221 1
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.. ..+ .-+++.|++|+++ .+.|+||+++.
T Consensus 206 ---~~---~~g-~D~~~~s~~K~l~-~~~~~G~l~~~ 234 (387)
T PRK09331 206 ---GK---KLG-ADFIVGSGHKSMA-ASAPSGVLATT 234 (387)
T ss_pred ---HH---HcC-CCEEEeeCccccc-CCCCEEEEEEC
Confidence 01 122 2367899999998 56799998764
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=153.34 Aligned_cols=162 Identities=13% Similarity=0.112 Sum_probs=124.5
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHc
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAA 157 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~ 157 (280)
.++......|++.++++.. .+++++ ++||++|+.++ +.+++.+||+|++++|+|..+.. .+...
T Consensus 61 r~~~pt~~~Le~~lA~l~g--------~~~~l~--~~sgt~Ai~~~--l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~ 128 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEG--------GRHALL--QPSGLAAISLV--YFGLVKAGDDVLIPDNAYGPNRDHGEWLARDF 128 (394)
T ss_pred CCCCHHHHHHHHHHHHHhC--------CCeEEE--eccHHHHHHHH--HHHHhCCCCEEEEecCCcccHHHHHHHHHHhc
Confidence 3344556788888888742 256777 99999999999 77889999999999999998764 45567
Q ss_pred CCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 158 GLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 158 G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
|+++..++. .+.+.++++++++++ +|++++|+|||| +..++++|+++|+++|+++|+|++|.....-
T Consensus 129 Gi~v~~vd~-------~~~~~l~~~i~~~tk---lV~le~p~Np~~---~~~di~~I~~ia~~~gi~livD~a~a~~~~~ 195 (394)
T PRK07050 129 GITVRFYDP-------LIGAGIADLIQPNTR---LIWLEAPGSVTM---EVPDVPAITAAARARGVVTAIDNTYSAGLAF 195 (394)
T ss_pred CeEEEEECC-------CCHHHHHHhcCCCCe---EEEEECCCCCCc---cHhhHHHHHHHHHHcCCEEEEECCccccccc
Confidence 988888764 145678888876654 889999999996 6778999999999999999999999765431
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccc-cccccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGL-YGERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RvG~~v~~ 278 (280)
..+ +.+ .-+++.|+||.++. .+.+.|++++.
T Consensus 196 --------~~l-~~G-aDi~v~S~tK~~~g~~~~~gG~v~~~ 227 (394)
T PRK07050 196 --------KPF-EHG-VDISVQALTKYQSGGSDVLMGATITA 227 (394)
T ss_pred --------CHH-HcC-CeEEEEECCceecCCCCeeEEEEEEC
Confidence 111 122 24889999999962 34568988764
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=151.71 Aligned_cols=164 Identities=11% Similarity=0.019 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTYH 165 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~ 165 (280)
.+++++.+++++... .++.+++ +.|+++++.++ +.+++.+||+|++++++|.. +...++..|++++.++
T Consensus 34 ~~~~~~~la~~~g~~-----~~~~~~~--~~~~t~al~~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 104 (356)
T cd06451 34 MDEILEGLRYVFQTE-----NGLTFLL--SGSGTGAMEAA--LSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVE 104 (356)
T ss_pred HHHHHHHHHHHhcCC-----CCCEEEE--ecCcHHHHHHH--HHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEee
Confidence 457788888886331 1234555 88889999999 77888899999999987765 4567788999999999
Q ss_pred eecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 166 YYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
. ++ ++.+|++.+++.+.+ +++ ++++++|+||||.+++. ++|.++|+++|+++++|+++......
T Consensus 105 ~-~~-~~~~~~~~l~~~i~~~~~~---~v~i~~~~~~~G~~~~~---~~i~~~a~~~~~~li~D~~~~~g~~~------- 169 (356)
T cd06451 105 K-PW-GEAVSPEEIAEALEQHDIK---AVTLTHNETSTGVLNPL---EGIGALAKKHDALLIVDAVSSLGGEP------- 169 (356)
T ss_pred c-CC-CCCCCHHHHHHHHhccCCC---EEEEeccCCCcccccCH---HHHHHHHHhcCCEEEEeeehhccCcc-------
Confidence 8 33 467899999999976 443 78888999999999874 45688889999999999987521111
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+...+.. +++.|.+|.++.| -++||+++.
T Consensus 170 -~~~~~~~~d-~~~~s~~K~l~~p-~g~G~l~~~ 200 (356)
T cd06451 170 -FRMDEWGVD-VAYTGSQKALGAP-PGLGPIAFS 200 (356)
T ss_pred -ccccccCcc-EEEecCchhccCC-CCcceeEEC
Confidence 111122234 4467889999854 479999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-18 Score=153.29 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=121.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh----HHHHHHcCC
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH----PNFFAAAGL 159 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~----~~~~~~~G~ 159 (280)
+..-...|++.++++... +.+++ +++|++|+.++ +.+++.+||+|+++.+.|+.. ...+...|+
T Consensus 52 ~~p~~~~le~~la~l~g~--------~~~~~--~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~ 119 (380)
T TIGR01325 52 ANPTVAAFEERIAALEGA--------ERAVA--TATGMSAIQAA--LMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI 119 (380)
T ss_pred CCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence 344578899999998522 34555 99999999999 777889999999999988764 334566899
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
++..++. .|++.+++++.++++ +|++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 120 ~v~~v~~-------~d~~~l~~~i~~~tk---lV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~- 185 (380)
T TIGR01325 120 EVSFVDP-------TDLNAWEAAVKPNTK---LVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQQ- 185 (380)
T ss_pred EEEEECC-------CCHHHHHHhcCCCce---EEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 9888876 268889888865543 8889999999998875 6777889999999999999998654421
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+ . +.+. -+++.|+||.++.+|.++|.+++
T Consensus 186 -p----l---~~g~-Divv~S~sK~l~g~g~~~gG~vv 214 (380)
T TIGR01325 186 -P----L---KLGA-DVVVYSATKHIDGQGRVMGGVIA 214 (380)
T ss_pred -c----h---hhCC-CEEEeeccceecCCCCeEEEEEE
Confidence 1 1 2222 36688999999989999844443
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=154.87 Aligned_cols=160 Identities=12% Similarity=0.057 Sum_probs=124.0
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC----hHHHHHHcC
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN----HPNFFAAAG 158 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~----~~~~~~~~G 158 (280)
++......|++.+|++... ++.++ +++|+.|+..+ +.+++.+||+|+++...|++ +...++..|
T Consensus 67 ~~~p~~~~le~~lA~l~g~--------~~al~--~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G 134 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGA--------EACFA--TASGMSAVFTA--LGALLGAGDRLVAARSLFGSCFVVCNEILPRWG 134 (403)
T ss_pred CCCchHHHHHHHHHHHhCC--------CcEEE--ECChHHHHHHH--HHHHhCCCCEEEEccCCcchHHHHHHHHHHHcC
Confidence 3445578899999998532 34455 99999999998 77888999999999866644 345566789
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
++++.++. .|++.++++++++++ +|++++|+||||.+.+ +++|+++|+++++++|+|++|.......
T Consensus 135 ~~v~~vd~-------~d~~~l~~ai~~~tk---lV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~ 201 (403)
T PRK07810 135 VETVFVDG-------EDLSQWEEALSVPTQ---AVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR 201 (403)
T ss_pred cEEEEECC-------CCHHHHHHhcCcCce---EEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 99988875 388999999877654 8889999999998885 6777889999999999999998665431
Q ss_pred CCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSV 277 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~ 277 (280)
+ . +.+. -+++.|++|.++.+|.++ ||++.
T Consensus 202 --~----~---~~ga-Divv~S~tK~l~g~g~~~gG~v~~ 231 (403)
T PRK07810 202 --G----L---PLGA-DVVVYSGTKHIDGQGRVLGGAILG 231 (403)
T ss_pred --h----h---hcCC-cEEEccCCceecCCcCceeEEEEe
Confidence 1 1 1222 367899999999899998 65554
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-18 Score=153.46 Aligned_cols=176 Identities=9% Similarity=0.003 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeeeE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~ 163 (280)
.+..++++.+.+.+....+.. ..+.+++ ++++++++.++ +..++.+||+|++.+++|... ...++..|++++.
T Consensus 38 ~~~~~~~~~~~~~l~~~~g~~-~~~~vi~--~~~gt~a~~~a--~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~ 112 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFKTK-SGTPFIF--PTTGTGAWESA--LTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDV 112 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCEEEE--eCCcHHHHHHH--HHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEE
Confidence 345566666665543332221 1133444 88889999998 777788999999999988655 4667788999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAP-SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
++. + .+..+|++.+++++.+.+ .+.+++++++++||||.+++.+++.++++ |+++|+++|+|+++.-...+
T Consensus 113 v~~-~-~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~g~~~----- 184 (401)
T PLN02409 113 VES-P-WGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSIGALD----- 184 (401)
T ss_pred EEC-C-CCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEcccccCCcc-----
Confidence 997 3 334589999999998632 13348888999999999999888877777 99999999999998632221
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
..+.+.+.. +++.|.+|.++.| .++||+++..
T Consensus 185 ---id~~~~~~D-~~~~s~~K~l~~P-~G~G~l~~~~ 216 (401)
T PLN02409 185 ---FRMDEWGVD-VALTGSQKALSLP-TGLGIVCASP 216 (401)
T ss_pred ---ccccccCcc-EEEEcCccccCcC-CCcceeEECH
Confidence 111122234 5566669999754 3799998753
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=152.59 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=120.9
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH---HcCC
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA---AAGL 159 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~---~~G~ 159 (280)
.......+|++.+++++.. +++++ ++||++|+..+ +.+++.+||+|+++.|.|..+...++ ..|+
T Consensus 50 ~~np~~~~lE~~lA~l~g~--------~~~l~--~~sG~~Ai~~~--l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~ 117 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG--------VDALA--FNSGMAAISTL--FFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV 117 (385)
T ss_pred CCCccHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc
Confidence 3445678999999999631 45565 89999999999 77889999999999999998877664 3466
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
++..++ +|.+.+++++++ +++ +|++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 118 ~v~~~~--------~d~~~l~~~i~~~~tk---lV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~ 183 (385)
T PRK08574 118 KVVLAY--------PSTEDIIEAIKEGRTK---LVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLYR 183 (385)
T ss_pred EEEEEC--------CCHHHHHHhcCccCce---EEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 665542 367889998876 443 7888999999999997 5577899999999999999985433210
Q ss_pred CCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSV 277 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~ 277 (280)
+ + ..+ .-+++.|+||.++.+|-++ |++++
T Consensus 184 --~------l-~~G-aDivv~S~sK~l~g~~d~~gG~vi~ 213 (385)
T PRK08574 184 --P------L-RHG-ADFVVHSLTKYIAGHNDVVGGVAVA 213 (385)
T ss_pred --h------h-hhC-CcEEEeeCceeecCCCCceeEEEEE
Confidence 1 1 122 3478999999998788775 66665
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-18 Score=154.97 Aligned_cols=207 Identities=17% Similarity=0.156 Sum_probs=135.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccC-----CCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-----SADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
.+.++|..|. + ...+.+.+++....... .....|....+.+.+++...+++....+. ...++.
T Consensus 19 ~~~~~~~~~~----~---~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~v~--- 86 (402)
T cd00378 19 RETLELIASE----N---FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGA--EYANVQ--- 86 (402)
T ss_pred HhCeeeeccC----C---cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCC--Cceeee---
Confidence 4679998776 3 23445555443321101 11233555666677777654443221111 123343
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-----HHHcCCeeeEEEeecC-CCCCcCHHHHHHHHhc-CCCC
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-----FAAAGLAMKTYHYYDP-KTNGLDFQGMLQDLGA-APSG 189 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-----~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~~~~-~~~~ 189 (280)
++||++|+.++ +.+++.+||+|++++|+|+.+... ++..|.++..+++..+ +++.+|++.+++.+.+ +++
T Consensus 87 ~~sgt~a~~~~--l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~- 163 (402)
T cd00378 87 PHSGSQANLAV--YFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPK- 163 (402)
T ss_pred cCCcHHHHHHH--HHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCC-
Confidence 44678999988 778889999999999999876443 5567887777776222 2688999999999864 333
Q ss_pred cEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccC-CCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc
Q 023599 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAY-QGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 190 ~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 268 (280)
++++++|+||+. .++++|+++|+++|+++|+|++| .++.+.... ..+ + . +.+ ++++|+||.+ +
T Consensus 164 --~v~~~~~~~~~~-----~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~-~~~---~-~-~~d-v~~~s~sK~l--~ 227 (402)
T cd00378 164 --LIVAGASAYPRP-----IDFKRFREIADEVGAYLLVDMAHVAGLVAGGVF-PNP---L-P-GAD-VVTTTTHKTL--R 227 (402)
T ss_pred --EEEecCcccCCC-----cCHHHHHHHHHhcCCEEEEEccchhhhhhcccC-CCc---c-c-CCc-EEEeccccCC--C
Confidence 777788888752 25788899999999999999995 555543211 111 1 1 234 6799999987 7
Q ss_pred ccccceEEEEc
Q 023599 269 GERVGALSVVR 279 (280)
Q Consensus 269 G~RvG~~v~~~ 279 (280)
|+|.||+++..
T Consensus 228 G~~gg~i~~~~ 238 (402)
T cd00378 228 GPRGGLILTRK 238 (402)
T ss_pred CCCceEEEecc
Confidence 99999998754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=153.30 Aligned_cols=160 Identities=14% Similarity=0.025 Sum_probs=118.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----H
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----A 155 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~ 155 (280)
.++++......|+++++++. + ++.++ +++|++|+.++ +.+++.+||+|++++|+|..+...+ +
T Consensus 45 y~ry~~p~~~~Le~~lA~l~-~--------~~~v~--~~sG~~Ai~~~--l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~ 111 (366)
T PRK07582 45 YGRASNPTWRALEAALGELE-G--------AEALV--FPSGMAAITAV--LRALLRPGDTVVVPADGYYQVRALAREYLA 111 (366)
T ss_pred eECCCCccHHHHHHHHHHHc-C--------CCEEE--ECCHHHHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHHHh
Confidence 44557778999999999986 1 34444 77778899998 7788899999999999998887654 3
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV 235 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~ 235 (280)
..|++++.++. ++. .+ ...+++ .++++++|+||||.+. ++++|+++|+++|+++|+|++|....
T Consensus 112 ~~G~~v~~v~~-~~~-----~~----~~~~~t---~lV~le~p~NPtg~v~---di~~I~~~a~~~g~~lvVD~t~~~~~ 175 (366)
T PRK07582 112 PLGVTVREAPT-AGM-----AE----AALAGA---DLVLAETPSNPGLDVC---DLAALAAAAHAAGALLVVDNTTATPL 175 (366)
T ss_pred cCeEEEEEECC-CCh-----HH----HhccCc---eEEEEECCCCCCCCcc---CHHHHHHHHHHcCCEEEEECCCCCcc
Confidence 57999999887 221 11 222333 3888899999999765 47888999999999999999996422
Q ss_pred cCcCCChhHHHHhhhcCCeEEEEeccccccc-ccccccceEEEE
Q 023599 236 MNMDADALPVRMFVADGGECLVAQSYSKTMG-LYGERVGALSVV 278 (280)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RvG~~v~~ 278 (280)
.. .+ + +.+.+ ++++|+||.++ .+|+|+||+++.
T Consensus 176 ~~--~p---~----~~g~D-ivv~S~sK~l~G~~g~~~G~v~~~ 209 (366)
T PRK07582 176 GQ--RP---L----ELGAD-LVVASDTKALTGHSDLLLGYVAGR 209 (366)
T ss_pred cc--Cc---h----hcCCc-EEEecccccccCCCCeeEEEEEcC
Confidence 11 11 1 12233 67899999984 467999999864
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=147.13 Aligned_cols=196 Identities=16% Similarity=0.113 Sum_probs=140.0
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
..+||-+ |.. +.-|.+.+++.+.+++.+... .|. +.+++++++.+++....+. +++++ |+|++
T Consensus 8 ~~~ina~-g~~-t~~g~s~~~~~v~~a~~~~~~------~~~---~~~~~~~~~~~~~a~~~g~----~~~~~--~~g~t 70 (363)
T TIGR01437 8 KKVINAS-GKM-TILGVSTVSDEVADAQKRGAQ------NYF---EIKELVNKTGEYIANLLGV----EDAVI--VSSAS 70 (363)
T ss_pred ceEEECC-cEe-ecCCCCCCCHHHHHHHHHHHh------cCC---CHHHHHHHHHHHHHHhhCC----CeEEE--EcCHH
Confidence 4677775 554 444555566666665555441 132 3556666666665443332 56666 99999
Q ss_pred hHHHHHHHHHHhhcCCC---------------EEEEeCCCCCCh----HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHH
Q 023599 122 GSLRIGADFLAKHYYQH---------------TVYLSQPTYGNH----PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQD 182 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd---------------~Vli~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 182 (280)
+|+.++ +.+++.+|| +|+++.|.|..| ...+...|+++++++. ++.+|++.++++
T Consensus 71 ~al~~a--l~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~----~~~~d~~~le~a 144 (363)
T TIGR01437 71 AGIAQS--VAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY----ANECSAEQLEAA 144 (363)
T ss_pred HHHHHH--HHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC----CCCCCHHHHHHh
Confidence 999999 888888998 999999888765 5667788999999986 235899999999
Q ss_pred HhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccc
Q 023599 183 LGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYS 262 (280)
Q Consensus 183 ~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 262 (280)
+.++++ .++++++|+||+|.+.+. ++|+++|++||+++|+|++|.. + . ......+. -+++.|++
T Consensus 145 i~~~t~--ai~~v~~~~~~~g~~~~~---~~i~~~a~~~gi~vivD~a~~~---~----~---~~~~~~g~-D~~~~S~~ 208 (363)
T TIGR01437 145 ITEKTA--AILYIKSHHCVQKSMLSV---EDAAQVAQEHNLPLIVDAAAEE---D----L---QKYYRLGA-DLVIYSGA 208 (363)
T ss_pred cChhce--EEEEEecCCCCcCCcCCH---HHHHHHHHHcCCeEEEECCCCC---c----h---HHHHHcCC-CEEEEeCC
Confidence 987754 355578899999998885 4579999999999999999961 1 1 11112223 35578899
Q ss_pred ccccccccccceEEEE
Q 023599 263 KTMGLYGERVGALSVV 278 (280)
Q Consensus 263 K~~~~~G~RvG~~v~~ 278 (280)
|.+ +|+|.||++..
T Consensus 209 K~l--~gp~~G~l~~~ 222 (363)
T TIGR01437 209 KAI--EGPTSGLVLGK 222 (363)
T ss_pred ccc--CCCceEEEEEc
Confidence 976 58899998753
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=152.77 Aligned_cols=198 Identities=12% Similarity=0.102 Sum_probs=134.9
Q ss_pred cCCCCccchHHHHHHHHHHhcc----CCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHH
Q 023599 54 TEEGKPLLLNAVRQAEQLLVND----LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGAD 129 (280)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~ 129 (280)
|..+.+++++.+..+..+...+ +...+.| +..+.+.+++++++++...+. .++++|++ |+|+++++..+
T Consensus 4 d~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~-~~~~~~~l~~a~~~~~~~~~~--~~~~~i~~--t~g~teal~~~-- 76 (382)
T TIGR03403 4 DNNATTMLDPKVKELMDPFFCDIYGNPNSLHQF-GTATHPAIAEALDKLYKGINA--RDLDDIII--TSCATESNNWV-- 76 (382)
T ss_pred cCcCCCCCCHHHHHHHHHHHHhcCcCCccccHH-HHHHHHHHHHHHHHHHHHcCc--CCCCeEEE--eCCHHHHHHHH--
Confidence 3444445555555555444321 1112223 234667899999888643322 14588888 99999999998
Q ss_pred HHHh-----hcC-CCEEEEeCCCCCChHH---HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 130 FLAK-----HYY-QHTVYLSQPTYGNHPN---FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 130 ~~~~-----~~~-Gd~Vli~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+.++ ..+ |++|+++.+.|+.+.. .++..|++++.++. + +++.+|++.+++++.++++ ++++++|+|
T Consensus 77 ~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~-~-~~g~~d~~~l~~~i~~~t~---lv~~~~~~n 151 (382)
T TIGR03403 77 LKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPI-N-EQGTITAEQVREAITEKTA---LVSVMWANN 151 (382)
T ss_pred HHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEec-C-CCCCCCHHHHHHhcccCCe---EEEEEcccC
Confidence 5543 245 4789999866655543 34568999999998 3 3467899999999876544 888999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
|||.+++. ++|.++|+++|+++++|+++...... ..+.+.+.+ +++.|+.|.+|.+|+ |++++
T Consensus 152 ~tG~~~~~---~~I~~la~~~g~~~ivD~a~~~g~~~--------~~~~~~~~D-~~~~s~~K~~gp~G~--g~l~v 214 (382)
T TIGR03403 152 ETGMIFPI---KEIGEICKERGVLFHTDAVQAIGKIP--------VDVQKAGVD-FLSFSAHKFHGPKGV--GGLYI 214 (382)
T ss_pred CCccccCH---HHHHHHHHHcCCEEEEechhhcCCCc--------cCccccCCC-EEEEcchhhCCCCce--EEEEE
Confidence 99999985 46788899999999999997633221 111122335 678999998887774 66654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=149.37 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=114.2
Q ss_pred CCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~ 188 (280)
+++++ |+||++|+.++ +.++ +.|||+|++++|+|..+...+...|++++.+++ +++++.+|++.++++++++++
T Consensus 47 ~~~v~--~~sgt~aL~~~--l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~-d~~~~~~d~~~le~~i~~~tk 121 (376)
T TIGR02379 47 KKALL--TPSCTAALEMA--ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI-RPDTMNIDETLIESAITHRTK 121 (376)
T ss_pred CeEEE--eCCHHHHHHHH--HHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEec-CCCcCCCCHHHHHHhcCcCce
Confidence 66777 99999999998 6665 689999999999999998888999999999999 566688999999999876544
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc-cCcCCChhHHHHhhhcCCeEEEEeccc----c
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV-MNMDADALPVRMFVADGGECLVAQSYS----K 263 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~S----K 263 (280)
+|+ |+||||...+ +.+|.++|+++|++||+|++++.+. ++.. . + .....+++|| |
T Consensus 122 ---~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~-~------~----g~~~~~~~fSf~~~K 181 (376)
T TIGR02379 122 ---AIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGR-A------L----GSIGHLGTFSFHETK 181 (376)
T ss_pred ---EEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCc-c------c----CCCCCEEEEeCCCCC
Confidence 555 6789998775 5577899999999999999998775 4321 1 1 1122344555 9
Q ss_pred cccccccccceEEEE
Q 023599 264 TMGLYGERVGALSVV 278 (280)
Q Consensus 264 ~~~~~G~RvG~~v~~ 278 (280)
.+. +|.+.|++++.
T Consensus 182 ~l~-~g~~gG~v~~~ 195 (376)
T TIGR02379 182 NYT-SGGEGGALLIN 195 (376)
T ss_pred cCc-ccCCceEEEEC
Confidence 996 79899998875
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=152.00 Aligned_cols=206 Identities=12% Similarity=0.007 Sum_probs=130.9
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCC----CCC-CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSA----DKE-YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
.+.++|+..++ .++...+..++++.+.+.. -+. ... |.......+|++.+++++.. ++.+++
T Consensus 46 ~~~~~~~sn~y---l~l~~~p~v~~a~~~~~~~-~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~-------~~~i~~-- 112 (410)
T PRK13392 46 RRVTIWCSNDY---LGMGQHPDVIGAMVDALDR-YGAGAGGTRNISGTSHPHVLLERELADLHGK-------ESALLF-- 112 (410)
T ss_pred ceEEEEECCCc---cCCCCCHHHHHHHHHHHHH-cCCCCchhhhcccChHHHHHHHHHHHHHhCC-------CCEEEE--
Confidence 45788888776 5544555555555555441 110 111 22222356899999998631 244553
Q ss_pred cccchhHHHHHHHHHHhh--cCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC-CCCcEEE
Q 023599 117 CLSGSGSLRIGADFLAKH--YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-PSGAIVL 193 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~~v 193 (280)
++ |++++..+ +..+. .+||.|++..+.|..+...++..|+++..++. .|.+.+++.+... +.+.++|
T Consensus 113 ~s-G~~a~~~~--i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~t~~v 182 (410)
T PRK13392 113 TS-GYVSNDAA--LSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH-------NDLADLEEQLASVDPDRPKLI 182 (410)
T ss_pred Cc-HHHHHHHH--HHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC-------CCHHHHHHHHHhccCCCCEEE
Confidence 55 46666666 44343 48898888776676666667778888766643 1455666666432 1244589
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE-EEEeccccccccccccc
Q 023599 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC-LVAQSYSKTMGLYGERV 272 (280)
Q Consensus 194 ~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~-i~~~S~SK~~~~~G~Rv 272 (280)
++++|+||||.+++ +++|.++|+++++++|+||+|....+..... .+....+..+++ ++++||||.||++|
T Consensus 183 ~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~--g~~~~~~~~~~~div~~tlsK~~g~~G--- 254 (410)
T PRK13392 183 AFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGG--GIAERDGLMDRIDMIQGTLAKAFGCLG--- 254 (410)
T ss_pred EEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCC--chhhhccCCCCCcEEEEEChHhhhccc---
Confidence 99999999999987 6677888999999999999998544421111 111111222233 88999999999988
Q ss_pred ceEEEE
Q 023599 273 GALSVV 278 (280)
Q Consensus 273 G~~v~~ 278 (280)
||++..
T Consensus 255 G~~~~~ 260 (410)
T PRK13392 255 GYIAAS 260 (410)
T ss_pred chhhcC
Confidence 888653
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=151.03 Aligned_cols=160 Identities=18% Similarity=0.119 Sum_probs=124.6
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcCC
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAGL 159 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~ 159 (280)
.......|++.++++... ++.++ +++|++|+..+ +.+++.+||+|+++.+.|...... ++..|+
T Consensus 38 ~~p~~~~le~~la~l~g~--------~~a~~--~~sG~~Ai~~~--l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~ 105 (369)
T cd00614 38 GNPTVDALEKKLAALEGG--------EAALA--FSSGMAAISTV--LLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI 105 (369)
T ss_pred CChhHHHHHHHHHHHHCC--------CCEEE--EcCHHHHHHHH--HHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence 455678899999998532 34455 88889999999 778889999999999999876544 346788
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
++..++. -|++.+++++.++++ +|++.+|+||||.+.+ +++|+++|+++|+++|+|++|....+..
T Consensus 106 ~~~~v~~-------~d~~~l~~~i~~~~~---~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~- 171 (369)
T cd00614 106 EVTFVDP-------DDPEALEAAIKPETK---LVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR- 171 (369)
T ss_pred EEEEeCC-------CCHHHHHHhcCCCCe---EEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC-
Confidence 8887775 258889998865444 8888999999999886 6677899999999999999997765421
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
.+ +.+ .-+++.|+||.++.+| .+.||++..
T Consensus 172 -------~~-~~g-~Divv~S~tK~l~g~~~~~gG~v~~~ 202 (369)
T cd00614 172 -------PL-ELG-ADIVVHSATKYIGGHSDVIAGVVVGS 202 (369)
T ss_pred -------hh-hhC-CcEEEeccceeccCCCCceEEEEEeC
Confidence 11 222 3477999999998776 889999874
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=148.95 Aligned_cols=172 Identities=16% Similarity=0.053 Sum_probs=128.3
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCee
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAM 161 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~ 161 (280)
+.|..-+.++++.+|+++.. ++..+ .|+|+++++.++ +.+++.+||+|+++.|+|......+...|+++
T Consensus 55 ~~~~g~i~~~~~~~A~~~ga--------~~~~~-~~~Gst~a~~~~--l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~ 123 (294)
T cd00615 55 LDPTGPIKEAQELAARAFGA--------KHTFF-LVNGTSSSNKAV--ILAVCGPGDKILIDRNCHKSVINGLVLSGAVP 123 (294)
T ss_pred CCCChHHHHHHHHHHHHhCC--------CCEEE-EcCcHHHHHHHH--HHHcCCCCCEEEEeCCchHHHHHHHHHCCCEE
Confidence 44554477899999998632 23332 289999999999 78889999999999999988888888899999
Q ss_pred eEEEeecCCC----CCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC-ccc
Q 023599 162 KTYHYYDPKT----NGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG-FVM 236 (280)
Q Consensus 162 ~~v~~~~~~~----~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~-~~~ 236 (280)
++++....++ ..+|++.+++++.+++ +.+++++++| ||||.+++ +++|+++|+++|+++|+|++|.. +.+
T Consensus 124 ~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~-~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~ 198 (294)
T cd00615 124 VYLKPERNPYYGIAGGIPPETFKKALIEHP-DAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRF 198 (294)
T ss_pred EEecCccCcccCcCCCCCHHHHHHHHHhCC-CceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhcc
Confidence 9887622222 3789999999997642 2447777888 79999986 67889999999999999999975 333
Q ss_pred CcCCChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 237 NMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
.+..+. . .. .....+++.|++|++ +|+|.|+++
T Consensus 199 ~~~~~~---~-~~-~~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 199 HPILPS---S-AA-MAGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred CcccCc---c-hh-hcCCcEEEEchhccc--chHhHHHHH
Confidence 321111 1 11 224678899999985 788887654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=150.10 Aligned_cols=167 Identities=14% Similarity=0.051 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeeeEE
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMKTY 164 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~v 164 (280)
-..++|+.+++++.... ..+.+++ +.+|++++..+ +.++..+||+|+++.++|.+. ...++..|++++.+
T Consensus 38 ~~~~~~~~l~~l~~~~~----~~~~i~~--~~~gt~~l~~~--~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i 109 (368)
T PRK13479 38 LTASVRAKLVAIATGEE----GYTCVPL--QGSGTFSVEAA--IGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVL 109 (368)
T ss_pred HHHHHHHHHHHHhCCCC----CceEEEE--cCCcHHHHHHH--HHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEE
Confidence 35678888888864321 1134555 99999999999 788888999999998888665 36678899999999
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
++ ++++.+|++.+++++.+++ +..++++++|+||||...+. ++|.++|+++++++|+|++ +.+... +
T Consensus 110 ~~--~~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~~---~~i~~l~~~~~~~livDa~-~~~g~~---~--- 176 (368)
T PRK13479 110 DT--GEDEPPDAAEVEAALAADP-RITHVALVHCETTTGILNPL---DEIAAVAKRHGKRLIVDAM-SSFGAI---P--- 176 (368)
T ss_pred EC--CCCCCCCHHHHHHHHHhCC-CCcEEEEEcccCccccccCH---HHHHHHHHHcCCEEEEEcc-cccCCc---c---
Confidence 98 3346789999999987653 23477889999999999874 5778889999999999954 444321 1
Q ss_pred HHHhhhcCCeEEEEecccccc-cccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTM-GLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~-~~~G~RvG~~v~~ 278 (280)
..+.+.+.+ +++.|++|.+ |.+| +||+++.
T Consensus 177 -~~~~~~~~d-~~v~s~~K~l~g~~G--~G~l~~~ 207 (368)
T PRK13479 177 -IDIAELGID-ALISSANKCIEGVPG--FGFVIAR 207 (368)
T ss_pred -ccccccCce-EEEecCccccccCCC--ceEEEEC
Confidence 112222234 5567999965 6677 5999875
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=150.80 Aligned_cols=200 Identities=14% Similarity=0.033 Sum_probs=139.9
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc-----
Q 023599 61 LLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY----- 135 (280)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~----- 135 (280)
+...+........+ .. ...|....+..++++++++++....+.+..++++++ |+||++++.++ +.....
T Consensus 11 ~~~~~~~~~~~~~n-~~-~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~--t~ggt~a~~~a--l~~~~~~~~~~ 84 (345)
T cd06450 11 PPALLLEMLTSAKN-AI-DFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVF--TSGGSESNLLA--LLAARDRARKR 84 (345)
T ss_pred HHHHHHHHHHHhcC-CC-CcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEE--eCChhHHHHHH--HHHHHHHhhhh
Confidence 33444444444431 22 344888889999999999887544333223456777 99999999988 544322
Q ss_pred -------C--CCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc---CCCCcEEEEecCCCCCCC
Q 023599 136 -------Y--QHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA---APSGAIVLLQASGHNPTG 203 (280)
Q Consensus 136 -------~--Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~~~~~~v~~~~p~NPTG 203 (280)
+ ++.|++++++|..+...++..|.+++.+++ ++ ++.+|++.+++++.+ +..+..++++++|+||||
T Consensus 85 ~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG 162 (345)
T cd06450 85 LKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV-DE-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTG 162 (345)
T ss_pred hhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee-CC-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCC
Confidence 2 347888999999888888888999999998 33 347999999999976 111335788899999999
Q ss_pred CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE-EEEecccccccccccccceEE
Q 023599 204 IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC-LVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 204 ~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~-i~~~S~SK~~~~~G~RvG~~v 276 (280)
.+. ++++|+++|+++|+++++|++|..+........ . . . ....++ .+..|++|.++ ++.|+||+.
T Consensus 163 ~~~---~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~-~-~-~~~~~~d~~~~s~~K~l~-~p~g~g~~~ 228 (345)
T cd06450 163 AID---PLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPR-H-L-D-FGIERVDSISVDPHKYGL-VPLGCSAVL 228 (345)
T ss_pred CCC---CHHHHHHHHHHhCCeEEEechhhHHHhhChhhH-H-H-h-cCccccCEEEEchhHhhC-CCcchHHHH
Confidence 874 477889999999999999999988875321111 0 0 1 111233 34679999765 778999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=152.23 Aligned_cols=212 Identities=14% Similarity=0.105 Sum_probs=132.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|...+.-|+ ..+...++..+.+.+.......|....+ .+|.+.+++++. .. .++++++ ++|
T Consensus 41 dg~~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~~~-~~----~~~~v~~--~~s 111 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGH-AHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVELLG-AP----EGGRVFF--CNS 111 (398)
T ss_pred CCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHhCC-CC----CCCEEEE--eCc
Confidence 4567899988764222232 1233333333333311111223543322 456666666532 11 2367887 999
Q ss_pred chhHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCCCCCcCHHHHHHHHhc
Q 023599 120 GSGSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~~~d~~~l~~~~~~ 185 (280)
|++|+..+ +.....+| ++|+..+++|..+....... |. ++..+|. .|++.+++.+.+
T Consensus 112 gsea~~~a--l~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~ 182 (398)
T PRK03244 112 GAEANEAA--FKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDD 182 (398)
T ss_pred hHHHHHHH--HHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcC
Confidence 99999999 44333455 57888888998775443322 21 1222221 378899988753
Q ss_pred CCCCcEEEEecCCCCCCCCCCCHHH-HHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 186 APSGAIVLLQASGHNPTGIDPTAQQ-WEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~~~~~~~-l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
+..+|+++.++||||.+++.++ +++|.++|++||+++|+||+|..|.... .... ....+...++ .+|||.
T Consensus 183 ---~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g--~~~~-~~~~~~~pDi---~t~sK~ 253 (398)
T PRK03244 183 ---DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG--AWFA-HQHDGVTPDV---VTLAKG 253 (398)
T ss_pred ---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccc--hHHh-hhhhCCCCCE---EEEchh
Confidence 3347888889999999997766 9999999999999999999998765432 1111 1122223344 488999
Q ss_pred ccccccccceEEEEc
Q 023599 265 MGLYGERVGALSVVR 279 (280)
Q Consensus 265 ~~~~G~RvG~~v~~~ 279 (280)
++ +|+|+||+++..
T Consensus 254 l~-~G~~ig~~~~~~ 267 (398)
T PRK03244 254 LG-GGLPIGACLAFG 267 (398)
T ss_pred hh-CCcccEEEEEcH
Confidence 99 899999998753
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=147.51 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCCee
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGLAM 161 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~~~ 161 (280)
.+..++|+.+++++... ..++|++ |+|+++++.++ +.+++.+||+|+++.+.|..+.. .++..|+++
T Consensus 44 ~~~~~~~~~la~~~~~~-----~~~~v~~--~~g~t~al~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~ 114 (376)
T TIGR01977 44 REVEETRQLLAKLFNAP-----SSAHVVF--TNNATTALNIA--LKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEI 114 (376)
T ss_pred HHHHHHHHHHHHHhCcC-----CCCeEEE--eCCHHHHHHHH--HHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEE
Confidence 55678999999987432 1257877 99999999999 77778899999999999877643 344569999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.++. + +++.+|++.+++++.+++ .++++++|+||||.+++. ++|.++|+++|+++|+|+++.......+
T Consensus 115 ~~v~~-~-~~~~~d~~~l~~~~~~~~---~~v~~~~~~n~tG~~~~~---~~i~~l~~~~~~~livD~a~~~g~~~~~-- 184 (376)
T TIGR01977 115 TIVKC-D-NEGLISPERIKRAIKTNT---KLIVVSHASNVTGTILPI---EEIGELAQENGIFFILDAAQTAGVIPID-- 184 (376)
T ss_pred EEEec-C-CCCCcCHHHHHHhcCCCC---eEEEEECCCCCccccCCH---HHHHHHHHHcCCEEEEEhhhccCccCCC--
Confidence 99987 3 356789999999996544 388899999999999985 4668889999999999999965443211
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+...+.. +++.|..|.++.|. .+|.+++.
T Consensus 185 ------~~~~~~D-~~~~s~~K~l~~p~-g~g~l~~~ 213 (376)
T TIGR01977 185 ------MTELAID-MLAFTGHKGLLGPQ-GTGGLYIR 213 (376)
T ss_pred ------chhcCCC-EEEecccccccCCC-CceEEEEc
Confidence 1111122 56788889876442 35666553
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=149.20 Aligned_cols=218 Identities=13% Similarity=0.047 Sum_probs=134.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|.....-|+ -.+..++++.+++. +. ...... ...+....+++.+..... .+++++ ++|
T Consensus 29 dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~--~~--~~~~~~-~~~~~~~~la~~l~~~~~----~~~v~~--~~s 96 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGH-AHPHLVEALKEQAE--KL--WHVSNL-YRIPEQERLAERLVENSF----ADKVFF--TNS 96 (389)
T ss_pred CCCEEEECCccHhhccCCC-CCHHHHHHHHHHHH--hc--Cccccc-cCChHHHHHHHHHHhhCC----CCEEEE--cCC
Confidence 4567899987643222343 23344444444443 11 001111 112233344444433221 267777 999
Q ss_pred chhHHHHHHHHHHh--hcCCC----EEEEeCCCCCChHHHHHHcCCeeeEEEeec--CCCC----CcCHHHHHHHHhcCC
Q 023599 120 GSGSLRIGADFLAK--HYYQH----TVYLSQPTYGNHPNFFAAAGLAMKTYHYYD--PKTN----GLDFQGMLQDLGAAP 187 (280)
Q Consensus 120 ~~~al~~~~~~~~~--~~~Gd----~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~--~~~~----~~d~~~l~~~~~~~~ 187 (280)
|++|++.+.++... ..+|| +|++.+++|.++.......+.......... ..++ ..|++.+++.+.++
T Consensus 97 GseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 175 (389)
T PRK01278 97 GAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPN- 175 (389)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCC-
Confidence 99999999433221 34666 899999999988766655544322221100 1111 15899999988653
Q ss_pred CCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 188 SGAIVLLQASGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
.++|+++..+||+| .+++.+.+++|.++|++||+++|+||+|..+..... ..+ ....+.... +.+|||.++
T Consensus 176 --~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~-~~~~~~~pd---i~t~sK~l~ 247 (389)
T PRK01278 176 --TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK--LFA-HEWAGVTPD---IMAVAKGIG 247 (389)
T ss_pred --eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--cee-ecccCCCCC---EEEEehhcc
Confidence 34777777788888 789999999999999999999999999998765321 111 011111122 458999998
Q ss_pred ccccccceEEEEc
Q 023599 267 LYGERVGALSVVR 279 (280)
Q Consensus 267 ~~G~RvG~~v~~~ 279 (280)
+|+|+||+++..
T Consensus 248 -~G~~ig~~~~~~ 259 (389)
T PRK01278 248 -GGFPLGACLATE 259 (389)
T ss_pred -CCcceEEEEEcH
Confidence 999999998753
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-17 Score=148.25 Aligned_cols=161 Identities=12% Similarity=0.026 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTY 164 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v 164 (280)
....+|++++++++.. ++++. ++||++|+.++ +.++ +.+||+|++++|+|..+...+...|++++.+
T Consensus 33 ~~~~~le~~la~~~g~--------~~~v~--~~sgt~al~la--l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~v 100 (379)
T PRK11658 33 PKNQALEQAFCQLTGN--------QHAIA--VSSATAGMHIT--LMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMV 100 (379)
T ss_pred HhHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEE
Confidence 3578999999999732 34455 89999999999 7777 6899999999999999988889999999999
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCc-ccCcCCChh
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGF-VMNMDADAL 243 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~-~~~~~~~~~ 243 (280)
++ +.+++.+|++.+++++.++++ +|+ |+||+|...+ +++|.++|+++|++||+|+++... .+.. .
T Consensus 101 d~-~~~~~~~d~~~l~~~i~~~tk---av~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~-~--- 166 (379)
T PRK11658 101 DV-DRDTLMVTPEAIEAAITPRTK---AII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKG-R--- 166 (379)
T ss_pred ec-CCCcCCcCHHHHHHhcccCCe---EEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECC-e---
Confidence 98 566677999999999876544 555 6788998764 667889999999999999999743 3331 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+...+ +.+.||+|...+++.+.|+++..
T Consensus 167 ---~~g~~g---~~~~Sf~~~K~l~~g~GG~v~~~ 195 (379)
T PRK11658 167 ---HIGARG---TAIFSFHAIKNITCAEGGLVVTD 195 (379)
T ss_pred ---ecCCCC---CEEEeCCCCCcCcccCceEEEEC
Confidence 111112 24677776666788899987753
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=130.03 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH-HHHHHcCCeeeEEEe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP-NFFAAAGLAMKTYHY 166 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~-~~~~~~G~~~~~v~~ 166 (280)
..++++.+++++. ...+++.+ ++|+++|+.++ +..+..+|++|+++.+.|..+. ..++..|++++.++.
T Consensus 2 ~~~~~~~l~~~~~------~~~~~~~~--~~~~t~a~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~ 71 (170)
T cd01494 2 LEELEEKLARLLQ------PGNDKAVF--VPSGTGANEAA--LLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPV 71 (170)
T ss_pred HHHHHHHHHHHcC------CCCCcEEE--eCCcHHHHHHH--HHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEecc
Confidence 3578999999874 12367777 88999999999 7777778999999999998888 788889999999987
Q ss_pred ecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 167 YDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
.+......+.+.+++... ..++.++++++++||+|...+. ++|.++|+++|+++|+|++|..+...... .
T Consensus 72 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~-----~ 141 (170)
T cd01494 72 DDAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPG-----V 141 (170)
T ss_pred CCCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccccc-----c
Confidence 322222223334544332 2345689999999999998876 67788899999999999999988774211 1
Q ss_pred HhhhcCCeEEEEecccccccccccccceEEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
.... ....+++.|++|.++. .|+||+++
T Consensus 142 ~~~~-~~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 142 LIPE-GGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred cccc-ccCCEEEEEcccccCC--CceEEEEe
Confidence 1111 2245778999999973 89999876
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=145.64 Aligned_cols=194 Identities=15% Similarity=0.053 Sum_probs=133.5
Q ss_pred CCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc
Q 023599 56 EGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135 (280)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~ 135 (280)
+++..+.+.+.++++... ......|. .-...+|+.+++++.... ....+++ +.||++++..+ +.+++.
T Consensus 5 p~p~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~la~~~~~~~----~~~~i~~--~~~gt~~l~~~--~~~~~~ 72 (355)
T TIGR03301 5 PGPLSTSATVRDAMLVDW--CHWDSEFN--DVTDQVRDRLLALAGGDD----NHTCVLL--QGSGTFAVEAT--IGSLVP 72 (355)
T ss_pred CCCCCCCHHHHHHhhhhc--cCCCHHHH--HHHHHHHHHHHHHhcCCC----CCcEEEE--eCCcHHHHHHH--HHhccC
Confidence 345566667766655422 11111232 235678899998864332 1124555 99999999999 777778
Q ss_pred CCCEEEEeCCCCCC--hHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHH
Q 023599 136 YQHTVYLSQPTYGN--HPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQ 213 (280)
Q Consensus 136 ~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~ 213 (280)
+||+|++.++++.+ +...++..|.+++.++. ++++.+|++.+++.+.+++ +..++++++++||||...+ +++
T Consensus 73 ~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~--~~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~~~~G~~~~---~~~ 146 (355)
T TIGR03301 73 RDGKLLVLINGAYGERLAKICEYLGIPHTDLNF--SEYEPPDLNRIEEALAADP-DITHVATVHHETTTGILNP---LEA 146 (355)
T ss_pred CCCeEEEECCCchhhHHHHHHHHcCCceEEEec--CCCCCCCHHHHHHHHHhCC-CceEEEEEecCCcccchhH---HHH
Confidence 88887766665533 45667789999999997 3456789999999997653 3457778889999999776 678
Q ss_pred HHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccc-cccccccceEEEE
Q 023599 214 IRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTM-GLYGERVGALSVV 278 (280)
Q Consensus 214 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RvG~~v~~ 278 (280)
|+++|++|++++|+|+++...... ..+... +.-++++|++|.+ +++| +||+++.
T Consensus 147 i~~l~~~~~~~livD~~~s~g~~~--------~~~~~~-~~d~~~~s~~K~l~~~~G--~g~~~~~ 201 (355)
T TIGR03301 147 IAKVARSHGAVLIVDAMSSFGAIP--------IDIEEL-DVDALIASANKCLEGVPG--FGFVIAR 201 (355)
T ss_pred HHHHHHHcCCEEEEEeccccCCcc--------cchhhc-CccEEEecCCcccccCCc--eeEEEEC
Confidence 899999999999999866533211 111111 3347789999987 5555 6999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=147.99 Aligned_cols=222 Identities=13% Similarity=0.054 Sum_probs=137.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...|||..|.....-++ .++..++++.+.+. .. ..|....+..++...+++.+....+. ..+++++ ++|
T Consensus 34 dG~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~--~~--~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~--~~s 104 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGH-NHPEVVEALKEQLA--KL--THFSLGFFYNEPAVELAELLLALTPE--GLDKVFF--VNS 104 (413)
T ss_pred CCCEEEEcCccHHhhccCC-CCHHHHHHHHHHHH--hC--cCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEE--cCc
Confidence 4568899987642111222 33344444444443 11 23333223444444444444333221 2478888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcC-------------CeeeEEEeecC-----CCCCcCHHHHHH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAG-------------LAMKTYHYYDP-----KTNGLDFQGMLQ 181 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G-------------~~~~~v~~~~~-----~~~~~d~~~l~~ 181 (280)
|++|+..+.+++....++++|++.+++|..+.......+ .+++.+|. ++ ..+..|++.+++
T Consensus 105 gsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~l~~ 183 (413)
T cd00610 105 GTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPY-PYRYRPPAELADDLEALEE 183 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCC-CccccchhhHHHHHHHHHH
Confidence 999999994333224578999999999988654443322 23455554 21 123448999999
Q ss_pred HHhcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEec
Q 023599 182 DLGAAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQS 260 (280)
Q Consensus 182 ~~~~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 260 (280)
.+.+...+..+++++..+|++|.++ +.+.+++|.++|++|++++|+||+|..+..... ... ....+...+ +.|
T Consensus 184 ~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~--~~~-~~~~~~~~d---~~t 257 (413)
T cd00610 184 ALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK--MFA-FEHFGVEPD---IVT 257 (413)
T ss_pred HHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--hhh-HhhcCCCCC---eEE
Confidence 9876433445666666667779876 677799999999999999999999998744211 111 111121223 458
Q ss_pred ccccccccccccceEEEE
Q 023599 261 YSKTMGLYGERVGALSVV 278 (280)
Q Consensus 261 ~SK~~~~~G~RvG~~v~~ 278 (280)
+||.++ .|+|+||++..
T Consensus 258 ~sK~l~-~g~~~g~~~~~ 274 (413)
T cd00610 258 LGKGLG-GGLPLGAVLGR 274 (413)
T ss_pred Eccccc-CccccEEEEEc
Confidence 999999 48999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=150.00 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~~~ 162 (280)
....|.+.++++..+ +..+. +++|++|+.++ +++++.+||+|+++.++|.+.... +...|+++.
T Consensus 62 tv~~lE~~la~leg~--------~~av~--~~SG~aAi~~a--l~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~ 129 (432)
T PRK06702 62 TLAAFEQKLAELEGG--------VGAVA--TASGQAAIMLA--VLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVT 129 (432)
T ss_pred HHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEE
Confidence 467889999998533 23444 99999999999 888899999999999999876665 567899988
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
+++. .+|++.++++++++++ +|++.+|+|||+.+.+ +++|+++|+++|+++|+|++|..-..
T Consensus 130 ~vd~------~~d~~~l~~~I~~~Tk---~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~------ 191 (432)
T PRK06702 130 FFNP------NLTADEIVALANDKTK---LVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL------ 191 (432)
T ss_pred EECC------CCCHHHHHHhCCcCCe---EEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh------
Confidence 8865 3689999999987765 7778899999998887 77889999999999999999842111
Q ss_pred hHHHHhhhcCCeEEEEecccc-----ccccccccc
Q 023599 243 LPVRMFVADGGECLVAQSYSK-----TMGLYGERV 272 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK-----~~~~~G~Rv 272 (280)
....+.+.. |++.|+|| ...++|.++
T Consensus 192 ---~~pl~~GAD-Ivv~S~TKy~~Ghsd~l~G~v~ 222 (432)
T PRK06702 192 ---CQAFEHGAN-IIVHSTTKYIDGHASSLGGIVI 222 (432)
T ss_pred ---CChhhcCCC-EEEEccccccCCCcceeceEEE
Confidence 111222222 77999999 777888887
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-17 Score=147.18 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh----hcCCCEEEEeCCCCCChHHHHH---HcCCe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK----HYYQHTVYLSQPTYGNHPNFFA---AAGLA 160 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~----~~~Gd~Vli~~P~y~~~~~~~~---~~G~~ 160 (280)
..++|+.+++++.. +++++++ ++|+++++.++ +.++ ..+||+|+++.+.|+.+...++ ..|++
T Consensus 51 ~~~~r~~ia~~~g~------~~~~v~~--~~g~t~al~~~--l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~ 120 (404)
T PRK14012 51 VDIARNQIADLIGA------DPREIVF--TSGATESDNLA--IKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE 120 (404)
T ss_pred HHHHHHHHHHHcCc------CcCeEEE--eCCHHHHHHHH--HHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCE
Confidence 56778889888632 2367877 99999999988 5443 3689999999999977655443 45999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.++. + +++.+|++.+++++.++++ ++++++++||||.+.+ +++|.++|+++++++|+|+++..-....
T Consensus 121 ~~~v~~-~-~~g~~d~~~l~~~i~~~t~---lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g~~~~-- 190 (404)
T PRK14012 121 VTYLDP-Q-SNGIIDLEKLEAAMRDDTI---LVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSVGKVPI-- 190 (404)
T ss_pred EEEEcc-C-CCCcCCHHHHHHhcCCCCE---EEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhcCCccc--
Confidence 999988 3 4567899999999976544 8989999999998886 5677899999999999999986432210
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+...+.. +++.|+.|.+| |+ ++|++++..
T Consensus 191 ------~~~~~~~D-~~~~s~~K~~g-p~-g~G~l~~~~ 220 (404)
T PRK14012 191 ------DLSKLKVD-LMSFSAHKIYG-PK-GIGALYVRR 220 (404)
T ss_pred ------CcccCCCC-EEEEehhhccC-CC-ceEEEEEec
Confidence 01111223 44568899887 55 799988764
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=148.21 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=121.1
Q ss_pred CCCCC--CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH---
Q 023599 80 KEYLP--ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF--- 154 (280)
Q Consensus 80 ~~y~~--~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~--- 154 (280)
+.|.. ..+...|++++|++..+ +++++ ++||++|+..+ +.+++++||+|++++|.|.++...+
T Consensus 53 ~~Y~r~~npt~~~Le~~iA~le~~--------~~~~~--~~sG~~Ai~~~--l~all~~GD~Vvv~~~~Y~~t~~l~~~~ 120 (394)
T PRK09028 53 MFYGRRGTPTHFAFQAAIVELEGG--------AGTAL--YPSGAAAISNA--LLSFLKAGDHLLMVDSCYEPTRDLCDKI 120 (394)
T ss_pred ceecCCCCchHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEECCCcHHHHHHHHHh
Confidence 34555 33456999999988421 45666 99999999999 7888999999999999998876544
Q ss_pred -HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 155 -AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 155 -~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
...|+++..++. .+.+.+++++.++++ +|++++|+||||.+ .++++|+++|+++|+++|+|++|..
T Consensus 121 l~~~Gi~v~~v~~-------~~~e~l~~~l~~~Tk---lV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~ 187 (394)
T PRK09028 121 LKGFGIETTYYDP-------MIGEGIRELIRPNTK---VLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWAS 187 (394)
T ss_pred hhhcceEEEEECC-------CCHHHHHHhcCcCce---EEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCccc
Confidence 457777776653 145778888876554 99999999999754 6789999999999999999999976
Q ss_pred cccCcCCChhHHHHhhhcCCeEEEEeccccccccc-ccccceEE
Q 023599 234 FVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY-GERVGALS 276 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RvG~~v 276 (280)
.... .+ .+.+.. +++.|.+|.++-+ ++..|+++
T Consensus 188 p~~~--~P-------l~~GaD-ivv~S~tK~l~Gh~d~~~G~~~ 221 (394)
T PRK09028 188 PINS--RP-------FEMGVD-ISIQAATKYIVGHSDVMLGTAT 221 (394)
T ss_pred cccC--Cc-------cccCce-EEEEeCCeEecCCCCEEEEEEE
Confidence 4321 01 122222 7799999999544 56677553
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=145.51 Aligned_cols=217 Identities=15% Similarity=0.089 Sum_probs=139.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|.....-|+ .++..++++.+++. .. ...+.+..+..+|++++++++.. .+++++ ++|
T Consensus 46 dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~--~~-~~~~~~~~~~~~lae~l~~~~~~-------~~~v~~--~~s 112 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGH-AHPRVVEAVKEALE--RG-TSYGAPTEAEILLAKEIISRVPS-------VEMVRF--VNS 112 (423)
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHH--hC-CcCCCCCHHHHHHHHHHHHhCCc-------ccEEEE--eCC
Confidence 4567899988864221222 23444555555554 22 22233566788999999998532 157777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH---cCCeeeEEEeec-------CCCC---CcCHHHHHHHHhcC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA---AGLAMKTYHYYD-------PKTN---GLDFQGMLQDLGAA 186 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~---~G~~~~~v~~~~-------~~~~---~~d~~~l~~~~~~~ 186 (280)
|++|++.+.++.......++|+...++|.++...+.. .|......+... .... ..|++.+++.+.+.
T Consensus 113 GseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 192 (423)
T TIGR00713 113 GTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY 192 (423)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHc
Confidence 9999999844433333558999999999887543332 111111111100 0000 02789999988754
Q ss_pred CCC-cEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 187 PSG-AIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 187 ~~~-~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
..+ +.+++.+.|+| +|.+.+ .+.+++|.++|++|++++|+||+|..+..+.. .. ....+...+ +.+|||.
T Consensus 193 ~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~-~~---~~~~~~~pD---i~t~sK~ 264 (423)
T TIGR00713 193 GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALG-GA---QEYFGVEPD---LTTLGKI 264 (423)
T ss_pred CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcc-hh---HHHhCCCcc---hhhhhhh
Confidence 233 34555578999 798888 68899999999999999999999998865311 11 111222233 3379999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
++ +|+|+||+++.
T Consensus 265 l~-~G~pig~v~~~ 277 (423)
T TIGR00713 265 IG-GGLPVGAFGGR 277 (423)
T ss_pred hc-CCCceeeeeEH
Confidence 99 99999999875
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=142.77 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
..+++++.+++....+ .+++++ ++||++|+.++ +..+ +.+||+|+++.|+|..+...+...|++++.+++
T Consensus 30 ~~~~~~~e~~la~~~g----~~~~v~--~~sgt~al~~~--l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~- 100 (375)
T PRK11706 30 GGFTRRCQQWLEQRFG----SAKVLL--TPSCTAALEMA--ALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI- 100 (375)
T ss_pred CHHHHHHHHHHHHHhC----CCeEEE--ECCHHHHHHHH--HHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec-
Confidence 3455555554433222 267777 99999999988 5544 579999999999999999999999999999998
Q ss_pred cCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc-CcCCChhHHH
Q 023599 168 DPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVR 246 (280)
Q Consensus 168 ~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~ 246 (280)
+++++.+|++.+++++.++++ ++++ .|+||...+ +++|.++|+++|++||+|++|+.+.. +. .. +.
T Consensus 101 d~~~~~~d~~~le~~i~~~tk---~i~~---~~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~-~~---~g 167 (375)
T PRK11706 101 RPDTMNIDETLIEAAITPKTR---AIVP---VHYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKG-RA---LG 167 (375)
T ss_pred CCCcCCcCHHHHHHhcCCCCe---EEEE---eCCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCC-ee---ee
Confidence 566778999999999876543 5554 357997654 66788999999999999999988763 32 11 11
Q ss_pred HhhhcCCeEEEEeccc----ccccccccccceEEE
Q 023599 247 MFVADGGECLVAQSYS----KTMGLYGERVGALSV 277 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~S----K~~~~~G~RvG~~v~ 277 (280)
.+ ..+++|| |.++ +|.+.++++.
T Consensus 168 ~~-------~~~~~~Sf~~~K~l~-~g~gG~~~~~ 194 (375)
T PRK11706 168 TI-------GHIGCFSFHETKNYT-AGEGGALLIN 194 (375)
T ss_pred cC-------cCEEEEeCCCCcccc-ccCCeEEEEC
Confidence 11 1233444 9997 6998777763
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=142.44 Aligned_cols=155 Identities=18% Similarity=0.171 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~~~~ 163 (280)
...|++.+++++.. +++++ +++|+.++.++ +. ++.+||+|+++++.|..+... +...|++++.
T Consensus 49 ~~~le~~la~l~g~--------~~~l~--~~sG~~al~~~--l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 115 (378)
T TIGR01329 49 RTALESLLAKLDKA--------DRAFA--FSSGMAALDVI--TR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVH 115 (378)
T ss_pred HHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEE
Confidence 45777888877422 44455 77778898877 43 679999999999999877654 3457999998
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++. .|++.++++++++++ ++++++|+||||.+.+ +++|+++|+++|+++|+|++|......
T Consensus 116 vd~-------~d~~~le~~i~~~tk---lv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~~------ 176 (378)
T TIGR01329 116 VDT-------TDLDKVKAALGPKTK---LVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLLC------ 176 (378)
T ss_pred eCC-------CCHHHHHHhcCcCce---EEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC------
Confidence 886 278999998875544 8999999999998885 778899999999999999998543221
Q ss_pred HHHHhhhcCCeEEEEeccccccccc-ccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLY-GERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~-G~RvG~~v~~ 278 (280)
..+ +.+. -+++.|++|.++-+ +++.|++++.
T Consensus 177 --~~l-~~g~-Di~v~S~tK~l~G~~~~~~G~v~~~ 208 (378)
T TIGR01329 177 --NPL-ELGA-DIVYHSATKFLAGHSDVMAGVLAVK 208 (378)
T ss_pred --Chh-hcCC-cEEEEecceeccCCccceeEEEEeC
Confidence 111 1222 27799999988643 5889998863
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=142.24 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=113.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCCe
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGLA 160 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~~ 160 (280)
......|++.++++... +..++ +++|++++.++ + .++.+||+|++++|.|+.... .+...|++
T Consensus 49 ~p~~~~Le~~lA~l~g~--------~~~~~--~~sG~aai~~~--~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~ 115 (377)
T PRK07671 49 NPTRAALEELIAVLEGG--------HAGFA--FGSGMAAITAV--M-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIE 115 (377)
T ss_pred ChHHHHHHHHHHHHhCC--------CceEE--eCCHHHHHHHH--H-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeE
Confidence 33467899999998532 22233 66667887765 3 567899999999999984433 33457888
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.++. .|++.++++++++++ +|++++|+||||.+. ++++|.++|+++|+++|+|++|....+..
T Consensus 116 v~~v~~-------~d~~~l~~ai~~~tk---lV~le~P~NPtg~~~---dl~~I~~la~~~g~~lvvD~a~~~~~~~~-- 180 (377)
T PRK07671 116 HTFVDT-------SNLEEVEEAIRPNTK---AIYVETPTNPLLKIT---DIKKISTIAKEKGLLTIVDNTFMTPYWQS-- 180 (377)
T ss_pred EEEECC-------CCHHHHHHhcCCCCe---EEEEECCCCCCCccc---CHHHHHHHHHHcCCEEEEECCCCccccCC--
Confidence 888865 378999999976654 889999999999876 46677888999999999999997644421
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccc-cccceEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSV 277 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~ 277 (280)
+ . +.+. -+++.|+||.++.++ .-.|++++
T Consensus 181 p----~---~~g~-Divv~S~sK~l~G~~~~~~G~~v~ 210 (377)
T PRK07671 181 P----I---SLGA-DIVLHSATKYLGGHSDVVAGLVVV 210 (377)
T ss_pred h----h---hhCC-eEEEecCcccccCCccceeEEEEe
Confidence 1 1 2222 488999999997554 34555544
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=141.95 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=121.6
Q ss_pred CCCCCCCCC---HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH---
Q 023599 80 KEYLPITGL---PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF--- 153 (280)
Q Consensus 80 ~~y~~~~G~---~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~--- 153 (280)
+.|+. .|. ..|++.+|++.. .+++++ ++||++|+.++ +.+++.+||+|++++|.|......
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~g--------~~~~~~--~~sG~~Ai~~a--l~all~~GD~Vl~~~~~y~~t~~~~~~ 108 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELEG--------GAGCYL--YPSGLAAVTNS--ILAFVKAGDHVLMVDSAYEPTRYFCDI 108 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHhC--------CCcEEE--ECcHHHHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHH
Confidence 33553 455 589999998852 156666 99999999999 888899999999999999876543
Q ss_pred -HHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC
Q 023599 154 -FAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ 232 (280)
Q Consensus 154 -~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~ 232 (280)
+...|+++..++. . +.+.++++++++++ +|++++|+||||. ..++++|+++|+++|+++|+|++|.
T Consensus 109 ~~~~~gi~v~~~d~--~-----~~e~l~~~i~~~tk---lV~lesp~Np~g~---~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 109 VLKRMGVDITYYDP--L-----IGEDIATLIQPNTK---VLFLEAPSSITFE---IQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred HHHhcCcEEEEECC--C-----CHHHHHHhcCCCce---EEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCc
Confidence 3457877776653 1 23788888876554 8999999999975 5678999999999999999999997
Q ss_pred CcccCcCCChhHHHHhhhcCCeEEEEeccccccccc-ccccceEEE
Q 023599 233 GFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY-GERVGALSV 277 (280)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RvG~~v~ 277 (280)
.-.... + .+.+.. ++++|++|.++-+ +...|+++.
T Consensus 176 ~g~~~~--p-------l~~gaD-ivv~S~tK~l~G~~d~~gG~v~~ 211 (377)
T TIGR01324 176 AGLLFK--P-------LEHGVD-ISIQAGTKYLVGHSDIMIGTVVA 211 (377)
T ss_pred cccccC--c-------cccCce-EEEecCceeccCCCCceEEEEEe
Confidence 644311 1 122233 6799999999754 467887764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=142.17 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=106.3
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIV 192 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 192 (280)
+++|++|+.++ +++++.+||+|++++|.|+++.. .++..|+++..++. . +.+.++++++++++ +
T Consensus 85 ~sSG~aAi~~~--l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~--~-----~~e~l~~al~~~Tk---l 152 (395)
T PRK05967 85 VPSGLAAVTVP--FLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP--E-----IGAGIAKLMRPNTK---V 152 (395)
T ss_pred ECcHHHHHHHH--HHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC--C-----CHHHHHHhcCcCce---E
Confidence 77789999999 88889999999999999998875 44678988888764 1 35778998877655 9
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc-cccc
Q 023599 193 LLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL-YGER 271 (280)
Q Consensus 193 v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~R 271 (280)
|++++|+||++ ...++++|+++|+++|+++|+|++|....+- + ..+.+.. |++.|.+|.++- .++.
T Consensus 153 V~lesPsNP~l---~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~--------~-pl~~GaD-ivv~S~tKy~~Gh~d~~ 219 (395)
T PRK05967 153 VHTEAPGSNTF---EMQDIPAIAEAAHRHGAIVMMDNTWATPLYF--------R-PLDFGVD-ISIHAATKYPSGHSDIL 219 (395)
T ss_pred EEEECCCCCCC---cHHHHHHHHHHHHHhCCEEEEECCccCceec--------C-hhHcCCC-EEEEecccccCCCCCee
Confidence 99999999984 7788999999999999999999999765442 1 1123333 779999999753 3466
Q ss_pred cceEE
Q 023599 272 VGALS 276 (280)
Q Consensus 272 vG~~v 276 (280)
.|+++
T Consensus 220 ~G~v~ 224 (395)
T PRK05967 220 LGTVS 224 (395)
T ss_pred EEEEE
Confidence 67554
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=146.70 Aligned_cols=146 Identities=13% Similarity=0.137 Sum_probs=109.1
Q ss_pred CCCeEEeecccchhHHHHHHHHHHhh-cCCCEEEEeCCCCCChHHHHHH----cCCeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 109 ENRVSTVQCLSGSGSLRIGADFLAKH-YYQHTVYLSQPTYGNHPNFFAA----AGLAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 109 ~~~i~~v~t~g~~~al~~~~~~~~~~-~~Gd~Vli~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
.+++.+ |+|+++++..+ +.++. .+||+|+++++.|+.+...++. .|++++.++. ++ + .+|++.+++++
T Consensus 129 ~~~v~~--~~g~t~~~~~~--~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~-~~-~-~~d~~~l~~~i 201 (447)
T PRK00451 129 VANASM--YDGATALAEAA--LMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPY-ED-G-VTDLEALEAAV 201 (447)
T ss_pred cceEEe--cCcHHHHHHHH--HHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecC-CC-C-CCCHHHHHHhc
Confidence 357777 99999999888 66654 6899999999999988877664 6999999998 43 4 78999999998
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE--cccCCCcccCcCCChhHHHHhhhcCCeEEEE--e
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF--DCAYQGFVMNMDADALPVRMFVADGGECLVA--Q 259 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~--De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--~ 259 (280)
.+++ .++++++| ||||.+.+ +++|.++|+++|+++++ |.+...+... ..+.+..+++. .
T Consensus 202 ~~~t---~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~~----------~~~~~~D~~~~s~~ 264 (447)
T PRK00451 202 DDDT---AAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLKP----------PGEYGADIVVGEGQ 264 (447)
T ss_pred CCCe---EEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCCC----------cccCCCCEEEECCC
Confidence 7654 37788888 89999854 77789999999999988 4332111110 01122233333 3
Q ss_pred cccccccccccccceEEEE
Q 023599 260 SYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v~~ 278 (280)
+|||.+++.|+|+||+++.
T Consensus 265 k~~~~~~~~Gpg~G~l~~~ 283 (447)
T PRK00451 265 PLGIPLSFGGPYLGFFATR 283 (447)
T ss_pred cCCCCCCCCCCCchHHHhh
Confidence 7899999999999998764
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=140.96 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh----cCC-CEEEEeCCCCCChH---HHHHHcCC
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH----YYQ-HTVYLSQPTYGNHP---NFFAAAGL 159 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~----~~G-d~Vli~~P~y~~~~---~~~~~~G~ 159 (280)
.+++|+.+++++.. ++++|++ |+|+++++.++ +.++. .+| +.|++....|+.+. ..++..|+
T Consensus 44 ~~~~r~~la~~~g~------~~~~v~~--~~g~t~a~~~~--l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~ 113 (353)
T TIGR03235 44 VERARKQVAEALGA------DTEEVIF--TSGATESNNLA--ILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGF 113 (353)
T ss_pred HHHHHHHHHHHhCC------CCCeEEE--eCCHHHHHHHH--HHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCC
Confidence 45788888888632 2477887 99999999988 55544 356 77888876665443 33456799
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.++. ++++.+|++.+++.+.+++ .++++++++||||.+++ +++|.++|+++|+++++|+++.-.....
T Consensus 114 ~v~~v~~--~~~~~~d~~~l~~~l~~~~---~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~~- 184 (353)
T TIGR03235 114 TVTYLPV--DESGRIDVDELADAIRPDT---LLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVVGKITV- 184 (353)
T ss_pred EEEEEcc--CCCCcCCHHHHHHhCCCCC---EEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhcCCccc-
Confidence 9999998 3456789999999986544 48888999999999987 5777889999999999999965433321
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+.+.+.. +++.|..|.+|.+| +|++++..
T Consensus 185 -------~~~~~~~D-~~~~s~~K~~gp~g--~g~l~~~~ 214 (353)
T TIGR03235 185 -------DLSADRID-LISCSGHKIYGPKG--IGALVIRK 214 (353)
T ss_pred -------cccccCCC-EEEeehhhcCCCCc--eEEEEEcc
Confidence 11112223 44668889877555 78887653
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=140.07 Aligned_cols=166 Identities=12% Similarity=0.026 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeeeEEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMKTYH 165 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~v~ 165 (280)
.+++|+.+++++.... ..+.|++ |.|++++++++ +.++..+||.+++..+++.+. ...++..|++++.++
T Consensus 37 ~~~~r~~la~l~~~~~----~~~~i~~--t~~~t~al~~~--~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~ 108 (363)
T TIGR02326 37 VEQIRQQLLALATAEE----GYTSVLL--QGSGTFAVEAV--IGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVD 108 (363)
T ss_pred HHHHHHHHHHHhCCCC----CceEEEE--cCCCHHHHHHH--HHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEe
Confidence 3456788887764321 0135777 99999999999 777788888888877766544 356778999999999
Q ss_pred eecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 166 YYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
+ ++++.+|++.+++++.++++ ..++++++++||||..++ +++|+++|+++|+++|+|+++.-.... ..+
T Consensus 109 ~--~~~~~~d~~~l~~~l~~~~~-~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~g~~~-----~~~ 177 (363)
T TIGR02326 109 T--GEVEPPDVVEVEAILAADPA-ITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSFGGIP-----IDI 177 (363)
T ss_pred C--CCCCCCCHHHHHHHHhhCCC-ccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEccccccCcc-----cch
Confidence 8 34567899999999876532 336778889999999987 568899999999999999876422111 111
Q ss_pred HHhhhcCCeEEEEecccccc-cccccccceEEEE
Q 023599 246 RMFVADGGECLVAQSYSKTM-GLYGERVGALSVV 278 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~-~~~G~RvG~~v~~ 278 (280)
. +.+.. +++.|++|.+ +.+| +||+++.
T Consensus 178 ~---~~~~D-~~~~s~~K~l~~p~G--~G~l~~~ 205 (363)
T TIGR02326 178 A---ELHID-YLISSANKCIQGVPG--FGFVIAR 205 (363)
T ss_pred h---hcCcc-EEEecCccccccCCc--ceEEEEC
Confidence 2 22223 6678999987 4445 7999875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=140.90 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=117.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCC
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGL 159 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~ 159 (280)
....+.....+|+++++++.. .+++++ ++||++|+.++ + .++.+||+|+++.+.|+.....+.....
T Consensus 48 Y~R~~~p~~~~le~~lA~leg--------~~~~v~--~~sG~aAi~~~--l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~ 114 (364)
T PRK07269 48 YTRTKNPTRAKLEETLAAIES--------ADYALA--TSSGMSAIVLA--F-SVFPVGSKVVAVRDLYGGSFRWFNQQEK 114 (364)
T ss_pred eeCCCCccHHHHHHHHHHHhC--------CCeEEE--eCCHHHHHHHH--H-HHhCCCCEEEEecCCcCchHHHHHHHHh
Confidence 344455678899999999952 256676 99999999988 5 4578999999999999876654443211
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+. .+.. ++..|++.++++++++++ +|++++|+||||.+. ++++|+++|+++|+++|+|++|..-...
T Consensus 115 ~~-~~~~----~~~~d~~~l~~~i~~~Tk---lV~lesP~NPtg~~~---di~~I~~la~~~gi~vvvD~t~~~~~~~-- 181 (364)
T PRK07269 115 EG-RFHF----TYANTEEELIAAIEEDTD---IVYIETPTNPLMVEF---DIEKVAKLAHAKGAKVIVDNTFYSPIYQ-- 181 (364)
T ss_pred cC-cEEE----EecCCHHHHHHhcCcCce---EEEEECCCCCCCeee---CHHHHHHHHHHcCCEEEEECCCcccccC--
Confidence 10 1111 123589999999977655 899999999999876 5778899999999999999997543321
Q ss_pred CChhHHHHhhhcCCeEEEEeccccccccccc-ccceEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGE-RVGALSV 277 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~ 277 (280)
.+ + +.+.. +++.|+||.++-+|- =.||++.
T Consensus 182 ~p------l-~~gaD-ivv~S~tK~l~g~~d~~gG~v~~ 212 (364)
T PRK07269 182 RP------I-ELGAD-IVLHSATKYLSGHNDVLAGVVVT 212 (364)
T ss_pred Cc------h-hhCCc-EEEecCceeccCCCcccceEEEe
Confidence 11 1 22222 779999999975553 3566554
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=142.27 Aligned_cols=155 Identities=18% Similarity=0.173 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~~~~ 162 (280)
....|++.++++... +..++ +++|+.|+.++ + .++.+||+|++++|.|+.... .+...|+++.
T Consensus 51 ~~~~Le~~la~l~g~--------~~al~--~~SG~~Al~~~--l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~ 117 (380)
T PRK06176 51 TRFALEELIADLEGG--------VKGFA--FASGLAGIHAV--F-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCT 117 (380)
T ss_pred hHHHHHHHHHHHhCC--------CCEEE--ECCHHHHHHHH--H-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEE
Confidence 367899999998532 23334 67778899866 4 567999999999999976543 3456788877
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. .|++.+++++.++++ +|++++|+||||.+.+ +++|+++|+++++++|+|++|....... +
T Consensus 118 ~vd~-------~d~e~l~~ai~~~t~---lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~--p- 181 (380)
T PRK06176 118 IIDT-------SDLSQIKKAIKPNTK---ALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN--P- 181 (380)
T ss_pred EcCC-------CCHHHHHHhcCcCce---EEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC--c-
Confidence 7765 378999998876544 8888999999999886 6677889999999999999998654421 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+ +.+.. +++.|++|.++.+|-.+|-+++
T Consensus 182 -----~-~~gaD-ivv~S~tK~l~g~~d~~gG~vv 209 (380)
T PRK06176 182 -----L-LLGAD-IVVHSGTKYLGGHSDVVAGLVT 209 (380)
T ss_pred -----c-ccCCC-EEEecCceeccCCccceeeEEE
Confidence 1 12222 7799999999877754444443
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=142.28 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH----HHHHHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP----NFFAAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~----~~~~~~G~~~~~ 163 (280)
...|++.++++.... +.+ + +++|+.++.++ +. ++.+||+|++++|.|+... ..++..|++++.
T Consensus 56 ~~~le~~lA~l~g~~-------~~v-~--~~sG~~ai~~~--l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~ 122 (390)
T PRK08064 56 REALEDIIAELEGGT-------KGF-A--FASGMAAISTA--FL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTF 122 (390)
T ss_pred HHHHHHHHHHHhCCC-------CeE-E--ECCHHHHHHHH--HH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEE
Confidence 568899999985321 333 3 66678888877 54 6789999999999997543 344568999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++. .|++.+++++.++++ +|++++|+||||.+.+ +++|.++|+++++++|+|++|....... +
T Consensus 123 v~~-------~d~~~l~~~l~~~tk---lV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~--~-- 185 (390)
T PRK08064 123 VDM-------TNLEEVAQNIKPNTK---LFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQK--P-- 185 (390)
T ss_pred ECC-------CCHHHHHHhcCCCce---EEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccccC--c--
Confidence 886 268899998876654 8999999999999875 5677888999999999999997754321 1
Q ss_pred HHHHhhhcCCeEEEEecccccccc-cccccceEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGL-YGERVGALSV 277 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~-~G~RvG~~v~ 277 (280)
. +.+ .-+++.|+||.++. +|+..|++++
T Consensus 186 --~---~~g-~Divv~S~tK~~~G~~~~laG~~v~ 214 (390)
T PRK08064 186 --L---DLG-ADVVLHSATKFLAGHSDVLAGLAVV 214 (390)
T ss_pred --h---hhC-CcEEEeecceeccCCccceeEEEEe
Confidence 1 122 24678999999863 3456676664
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=142.81 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~~~~ 162 (280)
-...|++.++++... +..++ +++|++|+.++ +.+++.+||+|+++.+.|..... .+...|++++
T Consensus 64 ~~~~le~~lA~l~g~--------~~al~--~~SG~~Ai~~a--l~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~ 131 (427)
T PRK05994 64 TNAVLEERVAALEGG--------TAALA--VASGHAAQFLV--FHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVR 131 (427)
T ss_pred cHHHHHHHHHHHhCC--------CcEEE--EcCHHHHHHHH--HHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEE
Confidence 356788889988522 33444 89999999999 77888999999999999986543 3567899988
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. .|++.+++++.++++ +|++++|+||||.+++ +++|+++|+++|+++|+|+++......
T Consensus 132 ~vd~-------~d~~~l~~ai~~~tk---lV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~----- 193 (427)
T PRK05994 132 WADA-------DDPASFERAITPRTK---AIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLI----- 193 (427)
T ss_pred EECC-------CCHHHHHHhcCcCCe---EEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccC-----
Confidence 8875 278899998876544 8888999999999886 567889999999999999999743221
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
..+ +.+.. +++.|++|.+|-+|-.+|.+++
T Consensus 194 ---~pl-~~gaD-ivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 194 ---RPI-EHGAD-IVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred ---Ccc-ccCCc-EEEEcCccccCCCCCcEEEEEE
Confidence 111 22233 7789999999888888887776
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=139.22 Aligned_cols=206 Identities=12% Similarity=-0.022 Sum_probs=128.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCC-----CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSAD-----KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
.+.++|+..++ -|+...+..+++..+.+.. -+.. ..|.+.....+|++.+++++. . ++.++
T Consensus 46 ~~~~~~~s~dy---lgl~~~p~v~~a~~~~~~~-~~~~~~~s~~~~g~~~~~~~l~~~la~~~g-~------~~~~~--- 111 (407)
T PRK09064 46 REVTVWCSNDY---LGMGQHPKVIEAMIEALDR-CGAGAGGTRNISGTNHYHVELERELADLHG-K------EAALV--- 111 (407)
T ss_pred ceEEEEECCCC---cCCCCCHHHHHHHHHHHHH-cCCCCCCcCcCccCHHHHHHHHHHHHHHhC-C------CcEEE---
Confidence 56789988776 5555555555555554442 1110 112234446778899998752 1 24444
Q ss_pred cccchhHHHHHHHHHHhh--cCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC-CCcEEE
Q 023599 117 CLSGSGSLRIGADFLAKH--YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP-SGAIVL 193 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~v 193 (280)
.++|.++...+ +..+. .+|+.|+.....+......++..|+++..++. .|++.+++.++... .+.++|
T Consensus 112 ~~sG~~an~~a--i~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v 182 (407)
T PRK09064 112 FTSGYVSNDAT--LSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLI 182 (407)
T ss_pred ECcHHHHHHHH--HHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEE
Confidence 45556676665 33333 36766666654444444445556766654443 37788888776432 234589
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEeccccccccccccc
Q 023599 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 194 ~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~Rv 272 (280)
++++++||+|.+.+ +++|.++|+++++++|+||+|....+..... .+....+. ....++++||||.||++|
T Consensus 183 ~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~--g~~~~~~~~~~~div~~t~sKa~g~~G--- 254 (407)
T PRK09064 183 AFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGG--GIAERDGLMDRIDIIEGTLAKAFGVMG--- 254 (407)
T ss_pred EEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCC--ChHHhcCCCCCCeEEEEecchhhhccC---
Confidence 99999999998887 6677888999999999999997443321111 11222222 123688999999999888
Q ss_pred ceEEEE
Q 023599 273 GALSVV 278 (280)
Q Consensus 273 G~~v~~ 278 (280)
||+++.
T Consensus 255 G~~~~~ 260 (407)
T PRK09064 255 GYIAGS 260 (407)
T ss_pred ceEecC
Confidence 988754
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-16 Score=139.07 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh---cCCCEEEEeCCCCCChHHH---HHHcCCee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH---YYQHTVYLSQPTYGNHPNF---FAAAGLAM 161 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~---~~Gd~Vli~~P~y~~~~~~---~~~~G~~~ 161 (280)
..++|+.+++++.. .+++|++ |+|+++++.++ +..+. .+||+|++....|+.+... ++..|+++
T Consensus 44 ~~~~r~~la~~~g~------~~~~i~~--t~~~t~a~~~a--l~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v 113 (379)
T TIGR03402 44 VEEAREQVAKLLGA------EPDEIIF--TSGGTESDNTA--IKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKV 113 (379)
T ss_pred HHHHHHHHHHHhCC------CCCeEEE--eCcHHHHHHHH--HHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEE
Confidence 45677888887632 2477888 99999999988 55433 4568999988888665443 34469999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.++. + +++.+|++.+++.+.+++ .++++++++||||.+++.+ +|.++|+++|+++++|+++..-...
T Consensus 114 ~~v~~-~-~~g~~~~~~l~~~i~~~~---~lv~i~~~~n~tG~~~~~~---~I~~l~~~~g~~vivD~~~~~g~~~---- 181 (379)
T TIGR03402 114 TYLPV-D-EEGRLDLEELRAAITDDT---ALVSVMWANNETGTIFPIE---EIGEIAKERGALFHTDAVQAVGKIP---- 181 (379)
T ss_pred EEEcc-C-CCCcCCHHHHHHhcCCCc---EEEEEEcccCCeeecccHH---HHHHHHHHcCCEEEEECcccccccc----
Confidence 99997 3 345689999999997654 3888999999999999864 6788999999999999998643221
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+.+.+.. +++.|..|.+|.+| +|++.+.
T Consensus 182 ----~~~~~~~~D-~~~~s~~K~~gp~G--~g~l~v~ 211 (379)
T TIGR03402 182 ----IDLKEMNID-MLSLSGHKLHGPKG--VGALYIR 211 (379)
T ss_pred ----cCcccCCCC-EEEEcHHHcCCCCc--eEEEEEC
Confidence 111112222 45667779777555 6666553
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-16 Score=140.23 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh----hcCCCEEEEeCCCCCChHHHH---HHcCC
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK----HYYQHTVYLSQPTYGNHPNFF---AAAGL 159 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~----~~~Gd~Vli~~P~y~~~~~~~---~~~G~ 159 (280)
..+++|+.+++++.. .+++|++ |+|+++++.++ +..+ ..+||+|+++.+.|..+...+ +..|+
T Consensus 48 ~~~~~r~~la~~~g~------~~~~v~~--~~g~t~a~~~~--l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~ 117 (402)
T TIGR02006 48 AVENARNQVAELIGA------DSREIVF--TSGATESNNLA--IKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGF 117 (402)
T ss_pred HHHHHHHHHHHHhCC------CCCeEEE--eCCHHHHHHHH--HHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCC
Confidence 356678888888532 2477887 99999999988 4433 358999999999998765444 45699
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.++. + +++.+|++.+++.+.+++ .++++++++||||.+.+ +++|.++|+++|+++++|+++.......
T Consensus 118 ~v~~v~~-~-~~~~~d~~~l~~~l~~~~---~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~~~~- 188 (402)
T TIGR02006 118 EVTYLPP-K-SNGLIDLEELKAAIRDDT---ILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGKIPI- 188 (402)
T ss_pred EEEEEcc-C-CCCcCCHHHHHHhcCCCC---EEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCCccc-
Confidence 9999998 3 456789999999987654 48889999999999886 5677889999999999999986433211
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+.+.. +++.|..|.+|.+| +|++++.
T Consensus 189 -------~~~~~~~D-~~~~s~~K~~gp~G--~G~l~~~ 217 (402)
T TIGR02006 189 -------NVNELKVD-LMSISGHKIYGPKG--IGALYVR 217 (402)
T ss_pred -------CccccCCC-EEEEehhhhcCCCc--eEEEEEc
Confidence 11112222 55777779887446 7877765
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-16 Score=141.92 Aligned_cols=164 Identities=17% Similarity=0.211 Sum_probs=116.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HH
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FA 155 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~ 155 (280)
+.|... |.+ .++++.+++....+ .++.++ +++|++++.++ + .++.+||+|++++|.|+.+... +.
T Consensus 125 ~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~--~~SG~aAi~~i--l-~ll~~GD~VI~~~~~y~~t~~ll~~~l~ 193 (464)
T PLN02509 125 YDYTRS-GNP-TRDALESLLAKLDK----ADRAFC--FTSGMAALSAV--T-HLIKNGEEIVAGDDVYGGSDRLLSQVVP 193 (464)
T ss_pred CccCCC-CCH-HHHHHHHHHHHHhC----CCEEEE--eCcHHHHHHHH--H-HHhCCCCEEEEcCCchhhHHHHHHHHHH
Confidence 446554 665 46666665544322 245555 78888888655 3 5688999999999999988644 44
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV 235 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~ 235 (280)
..|++++.++. .|++.+++++.++++ +|++++|+||||.+ .++++|+++|+++|+++|+|++|....
T Consensus 194 ~~G~~v~~vd~-------~d~e~l~~ai~~~Tk---lV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~ 260 (464)
T PLN02509 194 RSGVVVKRVNT-------TNLDEVAAAIGPQTK---LVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPV 260 (464)
T ss_pred HCCeEEEEeCC-------CCHHHHHHhCCcCCe---EEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccccc
Confidence 67888887764 368899998876554 88999999999974 678899999999999999999986544
Q ss_pred cCcCCChhHHHHhhhcCCeEEEEeccccccccccc-ccceEEE
Q 023599 236 MNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE-RVGALSV 277 (280)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~ 277 (280)
... .+ +.+. -+++.|++|.++.+|- =.|.+++
T Consensus 261 ~~~--------pl-~~ga-Divv~S~tK~l~G~gdv~gG~v~~ 293 (464)
T PLN02509 261 LSR--------PL-ELGA-DIVMHSATKFIAGHSDVMAGVLAV 293 (464)
T ss_pred cCC--------hh-hcCC-cEEEecCcccccCCCccceeEEEe
Confidence 321 11 2222 3779999999975453 3555543
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-16 Score=139.14 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH----HHHHHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP----NFFAAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~----~~~~~~G~~~~ 162 (280)
....|++.++++... +..++ +++|+.|+.++ +.+++.+||+|+++.+.|.... ..+...|++++
T Consensus 64 ~~~~le~~lA~l~g~--------~~av~--~~sG~~Ai~~a--l~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~ 131 (389)
T PRK05968 64 TVRAFEEMLAKLEGA--------EDARG--FASGMAAISST--VLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVD 131 (389)
T ss_pred hHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEE
Confidence 367899999998532 22334 67778899988 7778899999999999998643 45566799988
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. .|++.+++++ ++++ +|++++|+||+ +...++++|+++|+++|+++|+|++|....+.. +
T Consensus 132 ~vd~-------~d~~~l~~~i-~~tk---lV~ie~pt~~~---~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~--p- 194 (389)
T PRK05968 132 YVDG-------RDEEAVAKAL-PGAK---LLYLESPTSWV---FELQDVAALAALAKRHGVVTMIDNSWASPVFQR--P- 194 (389)
T ss_pred EeCC-------CCHHHHHHhc-ccCC---EEEEECCCCCC---CcHHHHHHHHHHHHHcCCEEEEECCCcchhccC--c-
Confidence 8875 2788898887 3444 77776655555 677899999999999999999999997765421 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
. ..+. -+++.|+||.++.+| ++.|+++..
T Consensus 195 ---~---~~g~-Divv~S~tK~l~g~~~~~gG~i~~~ 224 (389)
T PRK05968 195 ---I---TLGV-DLVIHSASKYLGGHSDTVAGVVAGS 224 (389)
T ss_pred ---h---hcCC-cEEEeeccccccCCCCeEEEEEEEC
Confidence 1 1122 367889999998766 578887743
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=137.02 Aligned_cols=187 Identities=15% Similarity=0.090 Sum_probs=127.9
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCC
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQH 138 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd 138 (280)
...+.++...+.+. .+ .|....+...|++++++++.. ++.++ ++||++|+.++ +.++ +.+||
T Consensus 8 ~~~~~~~~v~~~~~--~~---~~~~g~~~~~le~~la~~~g~--------~~~v~--~~sgt~al~~~--l~al~~~~Gd 70 (380)
T TIGR03588 8 IDQDDIDAVVEVLK--SD---FLTQGPTVPAFEEALAEYVGA--------KYAVA--FNSATSALHIA--CLALGVGPGD 70 (380)
T ss_pred CCHHHHHHHHHHHh--cC---CccCChhHHHHHHHHHHHHCC--------CeEEE--EcCHHHHHHHH--HHHcCCCCCC
Confidence 33444444444444 22 243445678999999999743 23344 67889999999 7776 67999
Q ss_pred EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 023599 139 TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP-SGAIVLLQASGHNPTGIDPTAQQWEQIRQL 217 (280)
Q Consensus 139 ~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~ 217 (280)
+|+++.|+|..+...+...|++++.+++ +++++.+|++.+++.+++.. ++..+|+. +|++|...+ +++|.++
T Consensus 71 ~Viv~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~---~~~i~~l 143 (380)
T TIGR03588 71 RVWTTPITFVATANCALYCGAKVDFVDI-DPDTGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD---MQAIAAL 143 (380)
T ss_pred EEEeCCcchHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---HHHHHHH
Confidence 9999999999999889999999999998 56677899999999997310 11225553 568897654 6778899
Q ss_pred HHhCCceeEEcccCCCcc-cCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 218 MRLKRLLPFFDCAYQGFV-MNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 218 ~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
|+++|++||+|+++.... ++. ... ... +.++-+++..+.+|.++. | .-|+++.
T Consensus 144 ~~~~~~~lI~D~a~a~g~~~~~-~~~---g~~-~~~d~~~~S~~~~K~~~~-~-~GG~v~~ 197 (380)
T TIGR03588 144 AKKHGLKIIEDASHALGAEYGG-KPV---GNC-RYADATVFSFHPVKIITT-A-EGGAVTT 197 (380)
T ss_pred HHHcCCEEEEECCCcccCccCC-EeC---CCc-cccceEEEecCCCCcccc-c-CceEEEE
Confidence 999999999999997653 332 111 110 122333333334588863 4 5666654
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-15 Score=133.19 Aligned_cols=216 Identities=12% Similarity=0.069 Sum_probs=135.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|.-...-|+ ..+..++++.+++. .. . +.......++++.+++++..... .+.+++ +++
T Consensus 27 ~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~--~~--~-~~~~~~~~~~~~~la~~l~~~~~----~~~~~~--~~s 94 (377)
T PRK02936 27 NGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLD--DI--W-HVSNLFTNSLQEEVASLLAENSA----GDLVFF--CNS 94 (377)
T ss_pred CCCEEEECCcchhhccCCC-CCHHHHHHHHHHHH--hc--c-ccccccCCHHHHHHHHHHHhcCC----CCEEEE--eCC
Confidence 4567899988852112343 34444555555554 11 1 11223456889999999865432 156666 999
Q ss_pred chhHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHH-HHHcCCeee---EEEeecCCCC--CcCHHHHHHHHhcCCCCcEE
Q 023599 120 GSGSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNF-FAAAGLAMK---TYHYYDPKTN--GLDFQGMLQDLGAAPSGAIV 192 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~-~~~~G~~~~---~v~~~~~~~~--~~d~~~l~~~~~~~~~~~~~ 192 (280)
|++|++.+..+. ...+| ++|++.+++|.+.... ....|.... ..+...+..+ ..|++.+++.+.++ .++
T Consensus 95 G~~a~~~A~~~a-~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~ 170 (377)
T PRK02936 95 GAEANEAALKLA-RKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEE---VAA 170 (377)
T ss_pred cHHHHHHHHHHH-HHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCC---eEE
Confidence 999999994322 22344 6799999999754322 222221110 1111000000 12788999888644 347
Q ss_pred EEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccc
Q 023599 193 LLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGER 271 (280)
Q Consensus 193 v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 271 (280)
+++..+++++|.. .+++.+++|.++|++||+++|+||+|.+|.... . ..+.... +...++ .+|||.++ +|+|
T Consensus 171 ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g-~-~~~~~~~-~~~~di---~t~sK~l~-~G~~ 243 (377)
T PRK02936 171 VMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTG-T-LFAYEQF-GLDPDI---VTVAKGLG-NGIP 243 (377)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc-h-hhHHHhh-CCCCcE---EEEccccc-CCCc
Confidence 8888889999877 578999999999999999999999998876642 1 1121122 222343 37999999 9999
Q ss_pred cceEEEE
Q 023599 272 VGALSVV 278 (280)
Q Consensus 272 vG~~v~~ 278 (280)
+||++..
T Consensus 244 ig~v~~~ 250 (377)
T PRK02936 244 VGAMIGK 250 (377)
T ss_pred cEEEEEc
Confidence 9999875
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=136.07 Aligned_cols=206 Identities=11% Similarity=-0.024 Sum_probs=130.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCC-----CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSAD-----KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
...++|+..+| -|+...+..++++.+.+.+ -+.. .-|.......+|++.+++++. . +..++
T Consensus 45 ~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~-~~~~~~~s~~~~g~~~~~~~Le~~la~~~g-~-------~~~l~-- 110 (402)
T TIGR01821 45 KDVTVWCSNDY---LGMGQHPEVLQAMHETLDK-YGAGAGGTRNISGTNIPHVELEAELADLHG-K-------ESALV-- 110 (402)
T ss_pred eeEEEeEccCc---CCCCCCHHHHHHHHHHHHH-cCCCCcchhhhhCCcHHHHHHHHHHHHHhC-C-------CeEEE--
Confidence 46789988887 5555555566665555542 1110 012222335678899998863 1 23344
Q ss_pred cccchhHHHHHHHHHHhhc--CCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC-CCcEEE
Q 023599 117 CLSGSGSLRIGADFLAKHY--YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP-SGAIVL 193 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~--~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~v 193 (280)
+++|++|+..+ +..+.. +|+.|+.....+......+...|+++..++. .|.+.+++.+.... ++.++|
T Consensus 111 ~~sG~~an~~a--i~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v 181 (402)
T TIGR01821 111 FTSGYVANDAT--LATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKII 181 (402)
T ss_pred ECchHHHHHHH--HHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEE
Confidence 66678888877 544443 6776666655554444555566776655443 36777888776432 234588
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEeccccccccccccc
Q 023599 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 194 ~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~Rv 272 (280)
++++|+||||.+.+ +++|.++|+++++++|+||+|....+..... ......+. ....++++||||.||++|
T Consensus 182 ~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~--g~~~~~~~~~~~div~~t~sKa~g~~G--- 253 (402)
T TIGR01821 182 AFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGG--GIAERDGLMHRIDIIEGTLAKAFGVVG--- 253 (402)
T ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCC--ccchhccCCCCCeEEEEechhhhccCC---
Confidence 99999999999987 6677889999999999999998444421111 01111111 123578899999999888
Q ss_pred ceEEEE
Q 023599 273 GALSVV 278 (280)
Q Consensus 273 G~~v~~ 278 (280)
||++..
T Consensus 254 G~i~~~ 259 (402)
T TIGR01821 254 GYIAAS 259 (402)
T ss_pred ceeecC
Confidence 887654
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-15 Score=134.46 Aligned_cols=169 Identities=12% Similarity=0.128 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc----CCCEEEEeCCCCCChHHHHHHcCCeeeEE
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY----YQHTVYLSQPTYGNHPNFFAAAGLAMKTY 164 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~----~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v 164 (280)
.++++.+++++. . ++.++++ ++||++++..+ +..... +||+|++.++.|..+...++..|++++.+
T Consensus 62 ~~~~~~la~~~g-~-----~~~~~~~--~~ggt~a~~~a--~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v 131 (371)
T PRK13520 62 EEAVEMLGELLH-L-----PDAYGYI--TSGGTEANIQA--VRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRA 131 (371)
T ss_pred HHHHHHHHHHhC-C-----CCCCeEE--ecCcHHHHHHH--HHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEe
Confidence 456777777652 2 1245666 99999999888 433322 57999999999988888888899999999
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
+. ++++.+|++.+++++.+++. +++...++||||.+.+ +++|.++|+++|+++++|++|..+..........
T Consensus 132 ~~--~~~~~~d~~~l~~~i~~~~~---~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~ 203 (371)
T PRK13520 132 PL--DDDYRVDVKAVEDLIDDNTI---GIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPN 203 (371)
T ss_pred cC--CCCCcCCHHHHHHHHhhCCE---EEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCC
Confidence 87 34567899999999976543 5556678999999887 6677888999999999999998765321011000
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+...+.+. +..|..| |+++|.++|++++.
T Consensus 204 -~~~~~~~vd~-~~~s~~K-~~~a~~~~G~~~~~ 234 (371)
T PRK13520 204 -FDFSLPGVDS-ITIDPHK-MGLAPIPAGGILFR 234 (371)
T ss_pred -ccccCCCCce-EEECCcc-ccCccCCceEEEEc
Confidence 0000011122 2345667 66788999988764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-15 Score=133.49 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh------cCCCEEEEeCCCCCChHHHHHHcCCeee
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH------YYQHTVYLSQPTYGNHPNFFAAAGLAMK 162 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~------~~Gd~Vli~~P~y~~~~~~~~~~G~~~~ 162 (280)
.++++.+++++.. +++++++ ++|+++++.++ +.++. .+||+|++++++|..+...++..|++++
T Consensus 62 ~~~~~~la~~~g~------~~~~~~~--~~g~~~~~~~~--~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~ 131 (373)
T TIGR03812 62 EEVVGSLGNLLHL------PDAYGYI--VSGGTEANIQA--VRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELR 131 (373)
T ss_pred HHHHHHHHHHhCC------CCCCeEE--eccHHHHHHHH--HHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEE
Confidence 4567777777532 2356666 89999998777 33322 3679999999999999888999999999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC---
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD--- 239 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~--- 239 (280)
.++. ++++.+|++.+++++.+++ ..++++ .|+||||.+.+ +++|+++|+++++++++|++|..+.....
T Consensus 132 ~v~~--~~~~~~d~~~l~~~l~~~~--~~vv~~-~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~ 203 (373)
T TIGR03812 132 YAPL--DEDYTVDVKDVEDLIDDNT--IGIVGI-AGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKG 203 (373)
T ss_pred EEee--CCCCCcCHHHHHHHHhhCc--EEEEEE-CCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcC
Confidence 9998 3457789999999997654 224444 47999999865 55668889999999999999976643100
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..... ..+...+-+.+ ..|..| |++++.|+|++++.
T Consensus 204 ~~~~~-~d~~~~~~d~~-~~s~~K-~~~~~~~~G~~~~~ 239 (373)
T TIGR03812 204 YNPPP-FDFSLPGVQSI-TIDPHK-MGLSPIPAGGILFR 239 (373)
T ss_pred CCCCC-ccccCCCCCEE-EECccc-cCCCcCCceEEEEe
Confidence 00000 00000111222 346669 77788999987754
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-15 Score=133.83 Aligned_cols=173 Identities=11% Similarity=0.013 Sum_probs=117.0
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCee
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAM 161 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~ 161 (280)
|+...+..+|++++|+++... +.++ .++|+.+...+ +.+++.+||.|++.++.|..+...+...++++
T Consensus 39 yg~~~~~~~LE~~lA~~~g~e-------~al~---~~sG~~a~~~~--i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~ 106 (392)
T PLN03227 39 YGTIDAHLELEQCMAEFLGTE-------SAIL---YSDGASTTSST--VAAFAKRGDLLVVDRGVNEALLVGVSLSRANV 106 (392)
T ss_pred cCChHHHHHHHHHHHHHhCCC-------cEEE---ecCcHHHHHHH--HHHhCCCCCEEEEeccccHHHHHHHHHcCCeE
Confidence 666667889999999996431 4444 45555555566 66788999999999999998887777777777
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcC--------CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAA--------PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~--------~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
+.++.. + .-+++.+.+.+.+. +++.++|++.+++||+|.+.+ +++++++|++||+++|+||+|.
T Consensus 107 ~~~~~~--d--~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~- 178 (392)
T PLN03227 107 RWFRHN--D--MKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFS- 178 (392)
T ss_pred EEeCCC--C--HHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECccc-
Confidence 777651 1 12344444444321 124568999999999999998 5677899999999999999997
Q ss_pred cccCcCCChhHHHHhhh---cCCeEEEEecccccccccccccceEEEE
Q 023599 234 FVMNMDADALPVRMFVA---DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~---~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+..-...... .....+ ....-|++.|+||.+| ++.||++..
T Consensus 179 ~g~~g~~G~g-~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~~ 222 (392)
T PLN03227 179 FGTLGKSGRG-SLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVGS 222 (392)
T ss_pred ccccCCCCCc-HHHHcCCCCCCCceEEEeechhhhh---ccCcEEecC
Confidence 4321111111 122111 1223577888999764 677877653
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-15 Score=134.84 Aligned_cols=150 Identities=14% Similarity=0.137 Sum_probs=101.2
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhc-----CC-CEEEEeCCCCCChHHHHHHcC-------------CeeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHY-----YQ-HTVYLSQPTYGNHPNFFAAAG-------------LAMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~-----~G-d~Vli~~P~y~~~~~~~~~~G-------------~~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+..+..... .| ++|+..+-+|.+........+ ..+..++.
T Consensus 98 ~~~~~--~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 171 (403)
T PRK05093 98 ERVFF--ANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF---- 171 (403)
T ss_pred CEEEE--eCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC----
Confidence 57777 9999999999954332211 23 578888888876543221111 11222221
Q ss_pred CCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCC--CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh
Q 023599 171 TNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDP--TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF 248 (280)
Q Consensus 171 ~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~--~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 248 (280)
.|++.+++.+.++ .++|+++ |.||+|.++ +.+.+++|+++|++||+++|+||+|.++.+... ..+.. .
T Consensus 172 ---~d~~~l~~~l~~~---~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~-~ 241 (403)
T PRK05093 172 ---NDLAAVKAVIDDH---TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD--LFAYM-H 241 (403)
T ss_pred ---CCHHHHHHHhcCC---eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chhhh-h
Confidence 2789999888643 2355554 899998876 899999999999999999999999998866432 11111 1
Q ss_pred hhcCCeEEEEecccccccccccccceEEEEc
Q 023599 249 VADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+.... +.||||.++ +|+|+||++++.
T Consensus 242 ~~~~pd---i~s~sK~l~-~G~rig~vv~~~ 268 (403)
T PRK05093 242 YGVTPD---ILTSAKALG-GGFPIGAMLTTA 268 (403)
T ss_pred cCCCCC---EEEeccccc-CCcceEEEEEcH
Confidence 121122 569999999 999999999864
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=137.29 Aligned_cols=142 Identities=16% Similarity=0.132 Sum_probs=100.0
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH-----HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc-CCCCc
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN-----FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA-APSGA 190 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~-----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~ 190 (280)
+++|+.++.++ +.+++.+||+|+++.|+|..+.. .+...|++++.++. +.+++.+|++.+++++++ +++
T Consensus 93 ~~sgt~al~~~--l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~~~~~k-- 167 (416)
T PRK00011 93 PHSGSQANAAV--YFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGV-DEETGLIDYDEVEKLALEHKPK-- 167 (416)
T ss_pred cCCchHHHHHH--HHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCc-CcccCCcCHHHHHHHHHhcCCC--
Confidence 44568899888 77778999999999999976432 12334678888887 445578999999999975 333
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC-cccCcCCChhHHHHhhhcCCeEEEEecccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG-FVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 269 (280)
++++++++|| .. .++++|.++|+++|+++|+|++|.. +.+....+ ..+ + .. -++++|+||.+ +|
T Consensus 168 -~v~~~~~~~~--~~---~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~----~~~-~-~~-di~~~S~~K~l--~g 232 (416)
T PRK00011 168 -LIIAGASAYS--RP---IDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHP----SPV-P-HA-DVVTTTTHKTL--RG 232 (416)
T ss_pred -EEEECCCcCC--Cc---cCHHHHHHHHHHcCCEEEEECcchhcccccCccC----CCC-C-CC-cEEEecCCcCC--CC
Confidence 6666555554 32 3478889999999999999999743 22221101 011 1 12 36699999976 79
Q ss_pred cccceEEEE
Q 023599 270 ERVGALSVV 278 (280)
Q Consensus 270 ~RvG~~v~~ 278 (280)
.|.||+++.
T Consensus 233 ~~gg~i~~~ 241 (416)
T PRK00011 233 PRGGLILTN 241 (416)
T ss_pred CCceEEEeC
Confidence 999999874
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=132.45 Aligned_cols=207 Identities=14% Similarity=0.033 Sum_probs=120.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCC-----CCCCCCHHHHHHHHHHHhCCCCccccCCCeEE
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEY-----LPITGLPEFNKLSAKLIFGADSPAIKENRVST 114 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-----~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~ 114 (280)
.+...+||+...+ -++...++.+++..+.+.. .+..... .......+|++.+++++.. +.++
T Consensus 44 ~g~~~ld~~s~~~---lgl~~~p~v~~A~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~--------~~~~- 110 (402)
T PRK07505 44 DGHTFVNFVSCSY---LGLDTHPAIIEGAVDALKR-TGSLHLSSSRTRVRSQILKDLEEALSELFGA--------SVLT- 110 (402)
T ss_pred CCceEEEeecCCc---cCCCCCHHHHHHHHHHHHH-hCCCCCCccchhhhhHHHHHHHHHHHHHhCC--------CEEE-
Confidence 3567899976543 3322344444444444441 1100101 1122345677777776411 3333
Q ss_pred eecccchhHHHHHHHHHH--hhcCCC-EEEEeCCCCCChHH---HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC
Q 023599 115 VQCLSGSGSLRIGADFLA--KHYYQH-TVYLSQPTYGNHPN---FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 115 v~t~g~~~al~~~~~~~~--~~~~Gd-~Vli~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~ 188 (280)
+++|++|...+..+.. ...+|+ .|++.+..|.+... .....+.+++.+|. .|++.+++++.++++
T Consensus 111 --~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~~~~ 181 (402)
T PRK07505 111 --FTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKTNKT 181 (402)
T ss_pred --ECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhcCCC
Confidence 4456677776622222 112243 46677766643221 11223456666664 378999998865543
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEecccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMGL 267 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~ 267 (280)
++++++|+||||.+++ +++|.++|+++++++|+||+|....+...........+.. ..+++++++||||.|+.
T Consensus 182 ---~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~ 255 (402)
T PRK07505 182 ---VAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGA 255 (402)
T ss_pred ---EEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhc
Confidence 7778899999999998 5667788999999999999986544421111111122221 35689999999999997
Q ss_pred cccccceEEE
Q 023599 268 YGERVGALSV 277 (280)
Q Consensus 268 ~G~RvG~~v~ 277 (280)
+| ||+++
T Consensus 256 ~G---g~~~~ 262 (402)
T PRK07505 256 SG---GVIML 262 (402)
T ss_pred cC---eEEEe
Confidence 76 88764
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=132.18 Aligned_cols=151 Identities=10% Similarity=0.081 Sum_probs=102.5
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-------cCC-CEEEEeCCCCCChH-HHHHHcCCe------------eeEEEeec
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-------YYQ-HTVYLSQPTYGNHP-NFFAAAGLA------------MKTYHYYD 168 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-------~~G-d~Vli~~P~y~~~~-~~~~~~G~~------------~~~v~~~~ 168 (280)
+.+++ +++|++|++.+..+.... .+| ++|+..+-+|.+.. ..+...+.. +..++.
T Consensus 98 ~~~~~--~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (396)
T PRK04073 98 DMVLP--MNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-- 173 (396)
T ss_pred CeEEE--cCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC--
Confidence 56676 999999999884433221 134 67888877776543 222222211 112221
Q ss_pred CCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHH-HHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 169 PKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQ-QWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 169 ~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~-~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
.|++.+++.+.+++ +++++++++||||.+++.+ .+++|.++|++||+++|+||+|..+.... .... ..
T Consensus 174 -----~d~~~l~~~i~~~~---~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g--~~~~-~~ 242 (396)
T PRK04073 174 -----GDLEALKAAITPNT---AAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG--KLFA-CD 242 (396)
T ss_pred -----CCHHHHHHhcccCe---EEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc--HHHH-hh
Confidence 27889998886543 4888888999999998765 59999999999999999999999876532 1111 11
Q ss_pred hhhcCCeEEEEecccccccccccccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+...++ .+|||.+|.+|+|+||+++.
T Consensus 243 ~~~~~pdi---~~~sK~lg~gg~~ig~~~~~ 270 (396)
T PRK04073 243 WDNVTPDM---YILGKALGGGVFPISCVAAN 270 (396)
T ss_pred hcCCCCCE---EEecccccCCCCcceEEEEc
Confidence 22222343 35799999888999999875
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-15 Score=134.33 Aligned_cols=156 Identities=18% Similarity=0.202 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~~ 162 (280)
-...|++.+|++... +..++ |++|++|+.++ +.+++.+||+|+++...|......+ ...|++++
T Consensus 65 ~~~~le~~lA~l~g~--------~~av~--~sSGt~Al~~a--l~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~ 132 (433)
T PRK08134 65 TVAVLEERVAALEGG--------VGAIA--TASGQAALHLA--IATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETT 132 (433)
T ss_pred HHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEE
Confidence 367899999988632 23444 99999999999 7777889999999999998664443 45799998
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. + |++.++++++++++ +|++.+|+||||.+.+ +++|+++|+++|+++|+|.++..-...
T Consensus 133 ~vd~-~------d~~~l~~~i~~~Tk---lV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~----- 194 (433)
T PRK08134 133 FVKP-G------DIDGWRAAIRPNTR---LLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLL----- 194 (433)
T ss_pred EECC-C------CHHHHHHhcCCCCe---EEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence 8886 1 78999999987655 7888899999999887 567789999999999999998644331
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
..+ +.+.. +++.|.+|.++-+|-.+|.+++
T Consensus 195 ---~pl-~~GaD-~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 195 ---RPF-EHGAD-LVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred ---Cch-hcCCC-EEEeccccccCCCCCceEEEEE
Confidence 111 22223 6689999999888988888766
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-14 Score=129.51 Aligned_cols=206 Identities=9% Similarity=-0.056 Sum_probs=128.4
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCC----CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKE----YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
...++|+..+| -++...+..++++.+.+..-...... +....-..+|++.+++++.. +..++ +
T Consensus 45 ~~~~~~~sn~y---lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--------~~~~~--~ 111 (406)
T PRK13393 45 REVTVWCSNDY---LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--------EAALL--F 111 (406)
T ss_pred ccEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--------CcEEE--e
Confidence 46788988887 34334444444444444410000000 11111246788888888521 34444 5
Q ss_pred ccchhHHHHHHHHHHhhc--CCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC-CCCcEEEE
Q 023599 118 LSGSGSLRIGADFLAKHY--YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-PSGAIVLL 194 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~--~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~~v~ 194 (280)
++|++|...+ +..+.. +||.|++....|......++..|.++..++. .|++.+++.+... .++.++|+
T Consensus 112 ~SG~~An~~a--i~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~ 182 (406)
T PRK13393 112 TSGYVSNWAA--LSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVA 182 (406)
T ss_pred CCcHHHHHHH--HHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEE
Confidence 5666788877 444433 7787776666666556666677877766653 3677777777543 12345888
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC-eEEEEecccccccccccccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG-ECLVAQSYSKTMGLYGERVG 273 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RvG 273 (280)
+++++|++|.+.+ +++|.++|+++++++|+||+|....+...... +....+... ..|+++||||.||++| |
T Consensus 183 ~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g--~~~~~~~~~~~~i~~~tlsKa~g~~G---G 254 (406)
T PRK13393 183 FESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGG--IAEREGLADRLTIIEGTLAKAFGVMG---G 254 (406)
T ss_pred EcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCc--hhhhcCCCCCCeEEEEeCchhhcccC---c
Confidence 9999999999988 66778889999999999999974443211111 111112222 3577899999999888 8
Q ss_pred eEEE
Q 023599 274 ALSV 277 (280)
Q Consensus 274 ~~v~ 277 (280)
|++.
T Consensus 255 ~~~~ 258 (406)
T PRK13393 255 YITG 258 (406)
T ss_pred eeeC
Confidence 8764
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=131.47 Aligned_cols=200 Identities=14% Similarity=-0.023 Sum_probs=132.5
Q ss_pred eeEeecceeecCC-CCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 44 KLNLGFGVYRTEE-GKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 44 ~i~l~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
...|+.|.+.-+. ....+.+.+.++.+.+. .. ...+++ -..+|++++++++.. +++++ ++||++
T Consensus 25 ~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~--~~-~~~~G~--~~~~fe~~lA~~~g~--------~~~v~--~~sGt~ 89 (438)
T PRK15407 25 PKPFVPGKSPIPPSGKVIDAKELQNLVDASL--DF-WLTTGR--FNDAFEKKLAEFLGV--------RYALL--VNSGSS 89 (438)
T ss_pred cccccCCCCCCCcCccCCCHHHHHHHHHHHH--hC-cccCCh--hHHHHHHHHHHHhCC--------CeEEE--ECCHHH
Confidence 3447888752111 12233444555555444 22 222222 257899999999632 34565 999999
Q ss_pred HHHHHHHHHHh---------hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEE
Q 023599 123 SLRIGADFLAK---------HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193 (280)
Q Consensus 123 al~~~~~~~~~---------~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 193 (280)
|+.++ +.++ +.+||+|+++.|+|..+...+...|++++.+++ +.+++.+|++.+++++.++++ +|
T Consensus 90 al~~a--L~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv-d~~~~~id~~~le~~i~~~tk---aV 163 (438)
T PRK15407 90 ANLLA--FSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV-ELPTYNIDASLLEAAVSPKTK---AI 163 (438)
T ss_pred HHHHH--HHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHHcCcCCe---EE
Confidence 99988 5543 478999999999999999999999999999998 556788999999999876543 55
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccc
Q 023599 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVG 273 (280)
Q Consensus 194 ~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG 273 (280)
++++ ++|.. .++++|.++|+++|++||+|++++....-... .....++-.++-...+|.+. +|- -|
T Consensus 164 i~~~---~~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~------~~G~~gd~~~fSf~~~k~~~-~ge-GG 229 (438)
T PRK15407 164 MIAH---TLGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDGR------MTGTFGDIATLSFYPAHHIT-MGE-GG 229 (438)
T ss_pred EEeC---CCCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcCCe------eeeccCceEEEeCCCCCCcc-ccC-ce
Confidence 5533 45542 46888999999999999999999765432111 11112222233333367775 455 37
Q ss_pred eEEEE
Q 023599 274 ALSVV 278 (280)
Q Consensus 274 ~~v~~ 278 (280)
+++..
T Consensus 230 ~l~t~ 234 (438)
T PRK15407 230 AVFTN 234 (438)
T ss_pred EEEEC
Confidence 77653
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=131.20 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=113.5
Q ss_pred CeEEeecccch-hHHHHHHHHHHhh--c-CCCEEEEeCCCCCChHHHHHHcCCeeeEEEe-ecCCCCCcCHHHHHHHHhc
Q 023599 111 RVSTVQCLSGS-GSLRIGADFLAKH--Y-YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHY-YDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 111 ~i~~v~t~g~~-~al~~~~~~~~~~--~-~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~~~~ 185 (280)
..++ ++|++ .++.++ +.++- . +||+|+++.-++......+...|++++.++. .+++++.+|++.+++++++
T Consensus 125 ~a~~--v~~~Tg~al~la--L~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~ 200 (444)
T TIGR03531 125 SAFV--VPLATGMSLSLC--LSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEE 200 (444)
T ss_pred EEEE--ECCHHHHHHHHH--HHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHh
Confidence 4555 88888 477766 55433 2 5899999998888788888899999999995 2567799999999999986
Q ss_pred CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh----hcCCeEEEEecc
Q 023599 186 APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV----ADGGECLVAQSY 261 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~ 261 (280)
.+.+.+++++.+|+ |+.....+++++|.++|++||+++|+|++|+...... ..+. +.+.-.+++.|+
T Consensus 201 ~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~-------~~~~~~g~~~Grad~vv~s~ 271 (444)
T TIGR03531 201 IGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKY-------MELINKAIKVGRVDAVVSST 271 (444)
T ss_pred ccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhh-------hhhhhccccccCCCeEEEeC
Confidence 54244566666665 6666678899999999999999999999998533210 1111 111114567799
Q ss_pred cccccccccccceEEEE
Q 023599 262 SKTMGLYGERVGALSVV 278 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~ 278 (280)
+|.+.+||+ |++++.
T Consensus 272 hK~l~~pg~--Gg~I~~ 286 (444)
T TIGR03531 272 DKNFMVPVG--GAIIYS 286 (444)
T ss_pred ccCCCCCCC--EEEEEE
Confidence 999998888 887755
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=130.62 Aligned_cols=162 Identities=17% Similarity=0.119 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHH----hhcCCCEEEEeCCCCCChHHH---HHHcCCe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLA----KHYYQHTVYLSQPTYGNHPNF---FAAAGLA 160 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~----~~~~Gd~Vli~~P~y~~~~~~---~~~~G~~ 160 (280)
.+++|+.+++++.. .++++++ |+|+++++.++ +.. ...+||+|++....|+.+... ++..|++
T Consensus 45 ~~~~r~~la~~~g~------~~~~v~~--t~~~t~a~~~~--l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~ 114 (364)
T PLN02651 45 VEKARAQVAALIGA------DPKEIIF--TSGATESNNLA--IKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFE 114 (364)
T ss_pred HHHHHHHHHHHhCC------CCCeEEE--eCCHHHHHHHH--HHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCE
Confidence 45677888887532 2477887 99999998877 333 246899999998777654333 3457889
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.++. ++++.+|++.+++++.++++ ++++++++||||.+.+ +++|.++|+++|+++++|.++.....+.
T Consensus 115 v~~v~~--~~~~~~d~~~l~~~i~~~t~---lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~~~-- 184 (364)
T PLN02651 115 VTYLPV--KSDGLVDLDELAAAIRPDTA---LVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAVGKIPV-- 184 (364)
T ss_pred EEEEcc--CCCCcCCHHHHHHhcCCCcE---EEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhhCCccc--
Confidence 999988 34567899999999976544 8899999999999887 5577889999999999999987543321
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+.+.. +++.|.-|.+| ...+|++++.
T Consensus 185 ------~~~~~~~D-~~~~s~hK~~g--p~G~g~l~v~ 213 (364)
T PLN02651 185 ------DVDDLGVD-LMSISGHKIYG--PKGVGALYVR 213 (364)
T ss_pred ------CcccCCCC-EEEechhhhCC--CCceEEEEEc
Confidence 11122223 44677789433 3457777664
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=130.65 Aligned_cols=223 Identities=9% Similarity=0.034 Sum_probs=131.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|.....-|+ -.+...+++.+++. .. .+.+.+..+.+. ...+++++....+... .+.+.+ +++
T Consensus 39 dG~~~lD~~~g~~~~~lGh-~~~~i~~a~~~~~~--~~-~~~~~~~~~~~~-~~~la~~l~~~~~~~~-~~~~~f--~~s 110 (425)
T PRK08088 39 EGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLK--KL-SHTCFQVLAYEP-YLELCEKMNQKVPGDF-AKKTLL--VTT 110 (425)
T ss_pred CCCEEEEcCCchhhcCCCC-CCHHHHHHHHHHHh--hC-CCccccccCCHH-HHHHHHHHHHhCCCCC-CCEEEE--eCC
Confidence 4567899987753121222 13333333333333 11 122222233343 3366666654322111 145565 777
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeee--------------E--EEeecCCCCCc--CHHHHHH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMK--------------T--YHYYDPKTNGL--DFQGMLQ 181 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~--------------~--v~~~~~~~~~~--d~~~l~~ 181 (280)
|++|++.+..+........+|+..+++|.+....+...+.... . +|. +..+... +++.+++
T Consensus 111 Gsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~l~~ 189 (425)
T PRK08088 111 GSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC-PLHGVSEDDAIASIER 189 (425)
T ss_pred cHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCc-cccCccHHHHHHHHHH
Confidence 8888887754433333345677779999887655554433211 1 121 0111111 1556888
Q ss_pred HHhc---CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 182 DLGA---APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 182 ~~~~---~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
.+.. ......+++-+..+|+.....+.+.+++|+++|+++++++|+||+|.++.... .. ..+ +....+..+
T Consensus 190 ~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g--~~---~~~-~~~~~~pdi 263 (425)
T PRK08088 190 IFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG--TL---FAM-EQMGVAADL 263 (425)
T ss_pred HHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc--ch---hHH-hhcCCCCCE
Confidence 7752 12234566666778898888999999999999999999999999999875532 11 111 111234558
Q ss_pred ecccccccccccccceEEEE
Q 023599 259 QSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~ 278 (280)
.||||.++ +|+|+||++++
T Consensus 264 ~s~sK~l~-~G~rig~v~~~ 282 (425)
T PRK08088 264 TTFAKSIA-GGFPLAGVTGR 282 (425)
T ss_pred EEEecccc-CCCcceeeEec
Confidence 99999998 99999999985
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=132.54 Aligned_cols=207 Identities=14% Similarity=0.123 Sum_probs=134.9
Q ss_pred EeecceeecCCCCccchHHHHHHHHHHhccCCCCCCC---CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 46 NLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEY---LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 46 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y---~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
-++.|.+ + ...++.+.+.+.+... -...+.| ...+|..+++..+.+++....+. ++..+..+.|+.+
T Consensus 72 ~~g~G~~-~---~~~~p~i~~~~~~~~~--~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~----~~~~l~~~~GA~a 141 (481)
T PRK04366 72 FYPLGSC-T---MKYNPKINEKVARLPG--FAELHPLQPEETVQGALELMYELQEWLKEITGM----DAVTLQPAAGAHG 141 (481)
T ss_pred eecCccc-C---CCCCHHHHHHHHhCcc--hhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC----CceEEEeCcHHHH
Confidence 3667764 2 2244444444443311 1124557 35678888888888887655443 2344422555555
Q ss_pred HHHHHHHHH-HhhcCCC----EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 123 SLRIGADFL-AKHYYQH----TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 123 al~~~~~~~-~~~~~Gd----~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
.+..+..+. ....+|| +|++++|.|+.+...++..|++++.++. + +++.+|++.|++++.++++ ++++++
T Consensus 142 ~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~-~-~~~~~D~e~L~~~i~~~t~---~V~v~~ 216 (481)
T PRK04366 142 ELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPS-N-EDGLVDLEALKAAVGEDTA---ALMLTN 216 (481)
T ss_pred HHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeec-C-CCCCcCHHHHHhhcccCCe---EEEEeC
Confidence 544331111 2355776 9999999999999999999999999998 3 4578999999999876544 777788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc----ccccc
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY----GERVG 273 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~RvG 273 (280)
|| |||.+ ..++++|+++|+++|+++++|.++.--.... .+ ..+.+.. ++++|..|.++.| |-.+|
T Consensus 217 Pn-~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~-~~------~~~~GaD-~~~~~~hK~l~~P~g~Ggp~~G 285 (481)
T PRK04366 217 PN-TLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAILGK-AR------PGDMGFD-VVHLNLHKTFSTPHGGGGPGSG 285 (481)
T ss_pred CC-Ccccc--chHHHHHHHHHHHcCCEEEEEecChhhhccc-CC------ccccCCC-EEEEechhhcCCCCCCCCCCee
Confidence 87 99954 4579999999999999999999974221110 00 1122223 4578888988754 44566
Q ss_pred eEEEE
Q 023599 274 ALSVV 278 (280)
Q Consensus 274 ~~v~~ 278 (280)
++.+.
T Consensus 286 ~l~~~ 290 (481)
T PRK04366 286 PVGVK 290 (481)
T ss_pred eeeeh
Confidence 66553
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-14 Score=126.80 Aligned_cols=212 Identities=10% Similarity=0.055 Sum_probs=126.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|......|+ -.+...++..+++.+ -.....+.......+|.+.++++. + .+.+++ +++
T Consensus 39 ~g~~~lD~~~~~~~~~~Gh-~~~~i~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~~S 106 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQGH-CHPKILAAMVEQAGR-LTLTSRAFRNDQLAPLYEELAALT-G-------SHKVLP--MNS 106 (401)
T ss_pred CCCEEEEcCcchhhccCCC-CCHHHHHHHHHHHhh-ccccccccCCHHHHHHHHHHHhhC-C-------CCEEEE--eCC
Confidence 4567888877642111111 133344444444441 111111122233455677777653 1 146666 999
Q ss_pred chhHHHHHHHHHHhh-----c--CC-CEEEEeCCCCCChHHHHHHcCC-------------eeeEEEeecCCCCCcCHHH
Q 023599 120 GSGSLRIGADFLAKH-----Y--YQ-HTVYLSQPTYGNHPNFFAAAGL-------------AMKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 120 ~~~al~~~~~~~~~~-----~--~G-d~Vli~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~ 178 (280)
|++|++++..+.... . +| ++|++..-+|.+....+...+. .+..++. .|++.
T Consensus 107 Gs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 179 (401)
T PRK00854 107 GAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEA 179 (401)
T ss_pred cHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHH
Confidence 999999994333211 1 24 6788888788665333322221 1222221 47899
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCCCCCH-HHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGIDPTA-QQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~-~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
+++.+.+++ ++|++++|+||||.+++. +.+++|.++|++||+++|+||+|..+...+. ... ....+....+++
T Consensus 180 le~~i~~~~---~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~--~~~-~~~~g~~~D~~~ 253 (401)
T PRK00854 180 LEAAITPNT---VAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK--LLA-EEHEGIEADVTL 253 (401)
T ss_pred HHHHhCCCe---EEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch--HhH-HhhcCCCCCEEE
Confidence 999886543 488899999999999984 4599999999999999999999987755321 111 111122223443
Q ss_pred EecccccccccccccceEEEEc
Q 023599 258 AQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+||.++...+|+||++...
T Consensus 254 ---~~K~l~gg~~~ig~v~~~~ 272 (401)
T PRK00854 254 ---IGKALSGGFYPVSAVLSNS 272 (401)
T ss_pred ---ecccccCCccCeEEEEEcH
Confidence 3799974447999998753
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=126.36 Aligned_cols=164 Identities=16% Similarity=0.052 Sum_probs=120.5
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCee
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAM 161 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~ 161 (280)
.......+|++++++++.. +++++ ++||++|+.++ +..+ +.+||+|+++.++|..+...+...|+++
T Consensus 15 ~~~~~~~~~~~~la~~~~~--------~~~~~--~~sgt~al~~~--l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~ 82 (352)
T cd00616 15 TLGPKVREFEKAFAEYLGV--------KYAVA--VSSGTAALHLA--LRALGIGPGDEVIVPSFTFVATANAILLLGATP 82 (352)
T ss_pred cCCHHHHHHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeE
Confidence 3344678999999999631 44555 88999999999 6666 5799999999999999988899999999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.++. +++++.+|++.+++.+.++++ ++++ .||+|...+ +++|.++|+++++++|+|+++.........
T Consensus 83 ~~~~~-~~~~~~~d~~~l~~~i~~~~~---~v~~---~~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~~- 151 (352)
T cd00616 83 VFVDI-DPDTYNIDPELIEAAITPRTK---AIIP---VHLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKGR- 151 (352)
T ss_pred EEEec-CCCcCCcCHHHHHHhcCcCCe---EEEE---ECCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECCE-
Confidence 99998 454678999999998865433 5665 358998765 566788899999999999998754321110
Q ss_pred hhHHHHhhhcCCeEEEEeccc--ccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYS--KTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RvG~~v~~ 278 (280)
.+ +.. .-+.+.||+ |.+ ++-+.|++++.
T Consensus 152 -----~~-~~~-~d~~~~S~~~~K~~--~~~~gg~~~~~ 181 (352)
T cd00616 152 -----KV-GTF-GDAGAFSFHPTKNL--TTGEGGAVVTN 181 (352)
T ss_pred -----Ec-ccC-cceeEEcCCCCCCC--cccCceEEEEC
Confidence 01 110 124566766 877 44567877764
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-14 Score=130.29 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~~~ 162 (280)
....|++.++++... +..++ +++|++|+.++ +.+++.+||+|+++...|...... +...|++++
T Consensus 70 ~~~~Le~~lA~l~g~--------~~av~--~sSG~aAi~~a--l~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~ 137 (436)
T PRK07812 70 TQDVVEQRIAALEGG--------VAALL--LASGQAAETFA--ILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVS 137 (436)
T ss_pred hHHHHHHHHHHHhCC--------CeEEE--EccHHHHHHHH--HHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEE
Confidence 356788888887532 33444 88899999999 888899999999999888775543 334677777
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++- . .|++.++++++++++ +|++.+|+||+|.+.+ +++|.++|+++|+++|+|+++..-...
T Consensus 138 ~vdd--~----~d~e~l~~ai~~~tk---lV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~~----- 200 (436)
T PRK07812 138 FVED--P----DDLDAWRAAVRPNTK---AFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYLI----- 200 (436)
T ss_pred EECC--C----CCHHHHHHhCCCCCe---EEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC-----
Confidence 6641 2 389999998876554 8889999999998886 556688999999999999987642221
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+ +.+.+++ +.|++|.+|.+|--+|++++.
T Consensus 201 ---~pl-~~GaDiv-v~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 201 ---RPL-EHGADIV-VHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred ---Cch-hcCCCEE-EEecccccCCCCCeEEEEEEc
Confidence 111 2334444 699999998888878887774
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=124.35 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=128.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|...+.-|+. .++.+++..+++.+-......|. .....+|.+.++++. . .+.+.+ +++
T Consensus 37 dG~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~----~----~~~v~~--~~s 104 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGNGYT-NEPVLRLAKKLIDAT----F----ADRVFF--CNS 104 (406)
T ss_pred CCCEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccCccC-CHHHHHHHHHHHhhC----C----CCeEEE--cCC
Confidence 45678999776422223443 33444444444441001111121 112234555555542 1 267777 999
Q ss_pred chhHHHHHHHHHHhh------cCCCEEEEeCCCCCChHHHHHHcCCeee----EEEeecC-C-CCCcCHHHHHHHHhcCC
Q 023599 120 GSGSLRIGADFLAKH------YYQHTVYLSQPTYGNHPNFFAAAGLAMK----TYHYYDP-K-TNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 120 ~~~al~~~~~~~~~~------~~Gd~Vli~~P~y~~~~~~~~~~G~~~~----~v~~~~~-~-~~~~d~~~l~~~~~~~~ 187 (280)
|++|++.+..+.... ....+|+..+.+|.+........+.... +.++... . -...|++.+++.+.++
T Consensus 105 GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 183 (406)
T PRK12381 105 GAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQ- 183 (406)
T ss_pred cHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCC-
Confidence 999999995443222 1346899999999877544333222110 0011000 0 0124788999888643
Q ss_pred CCcEEEEecCCCCCCCCCC--CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccc
Q 023599 188 SGAIVLLQASGHNPTGIDP--TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTM 265 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~--~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 265 (280)
..++++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|..+.... ...+.. ..+.... +.+|||.+
T Consensus 184 --~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G--~~~~~~-~~~v~pD---i~t~sK~l 254 (406)
T PRK12381 184 --TCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG--ELYAYM-HYGVTPD---VLTTAKAL 254 (406)
T ss_pred --eeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc--chhhhH-hhCCCCC---EEEehhhh
Confidence 235554 6999999765 68999999999999999999999998885542 121111 1122223 35999999
Q ss_pred cccccccceEEEEc
Q 023599 266 GLYGERVGALSVVR 279 (280)
Q Consensus 266 ~~~G~RvG~~v~~~ 279 (280)
+ +|+|+||+++..
T Consensus 255 ~-gG~~ig~~~~~~ 267 (406)
T PRK12381 255 G-GGFPIGAMLTTE 267 (406)
T ss_pred h-CCCceEEEEEcH
Confidence 8 899999998753
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=124.49 Aligned_cols=207 Identities=13% Similarity=0.007 Sum_probs=127.0
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccC----CCCCCCC----CCCCCHHHHHHHHHHHhCCCCccccCCCeE
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL----SADKEYL----PITGLPEFNKLSAKLIFGADSPAIKENRVS 113 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~----~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~ 113 (280)
...++|+..+|++....+.+.+.+..+.+....+. ....+.. ...-..++++.+|+++... +.++
T Consensus 4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-------~~l~ 76 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-------EAFI 76 (370)
T ss_pred CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-------eEEE
Confidence 46899999999888877777777766666553110 0011111 2223567899999986431 2233
Q ss_pred EeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCc
Q 023599 114 TVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGA 190 (280)
Q Consensus 114 ~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~ 190 (280)
+ ++|. .++..+ +..+..+||.|++..-.+......++......+.++ ..|++.+++.+.+. +++.
T Consensus 77 ~--~sG~-~a~~~~--~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~ 144 (370)
T PRK05937 77 V--PSGY-MANLGL--CAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGR 144 (370)
T ss_pred E--CChH-HHHHHH--HHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCc
Confidence 3 5555 444443 333445777777665555444444544433333332 25899999988743 1234
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
+++++++++|+||.+.+ +++|.++|+++|+++++|++|....+...... ........+..+.+.||||.+|..|.
T Consensus 145 ~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g--~~~~~~~~~~~~~~~tlsK~~g~~G~ 219 (370)
T PRK05937 145 IFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKG--FCHSLGYENFYAVLVTYSKALGSMGA 219 (370)
T ss_pred EEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCc--hHHhhCCCCCcEEEEechhhhhcCce
Confidence 57778999999999998 55678889999999999999986544211110 01111111223678999999997775
Q ss_pred cc
Q 023599 271 RV 272 (280)
Q Consensus 271 Rv 272 (280)
++
T Consensus 220 ~v 221 (370)
T PRK05937 220 AL 221 (370)
T ss_pred EE
Confidence 53
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-13 Score=120.29 Aligned_cols=212 Identities=12% Similarity=0.098 Sum_probs=131.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|.-. ......++.+++..+.+. .. . +.+..-...+++.+++.+.+.. ...+++ +++
T Consensus 27 dg~~~lD~~s~~~~--~~lG~~p~v~~a~~~~~~--~~--~-~~~~~~~~~~~~~la~~l~~~~-----~~~~~~--~~S 92 (375)
T PRK04260 27 DGKKYLDFSSGIGV--TNLGFHPQVQQALQKQAG--LI--W-HSPNLYLNSLQEEVAQKLIGDK-----DYLAFF--CNS 92 (375)
T ss_pred CCCEEEECCCCccc--ccCCCCHHHHHHHHHHHH--hc--C-cccCccCCHHHHHHHHHHhcCc-----CCEEEE--cCc
Confidence 34578999776310 122233344444444443 11 1 1222234678899998864421 122345 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChH-HHHHHcCCe---------eeEEEeecCCCCCcCHHHHHHHHhcCCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP-NFFAAAGLA---------MKTYHYYDPKTNGLDFQGMLQDLGAAPSG 189 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~-~~~~~~G~~---------~~~v~~~~~~~~~~d~~~l~~~~~~~~~~ 189 (280)
|++|+..+..+......+++|++.+.+|.+.. ..+...|.+ +..++.. ...|++.+++.+.++
T Consensus 93 GseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~dl~~l~~~l~~~--- 165 (375)
T PRK04260 93 GAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA----IFNDLNSVKALVNKN--- 165 (375)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe----CCCCHHHHHHhcCCC---
Confidence 99999988444333345678999999987643 222222221 1111110 013789999877543
Q ss_pred cEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc
Q 023599 190 AIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 190 ~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 268 (280)
..++++.+++|++|...+ .+.++++.++|+++|+++|+||+|..+.... ..++. ...+..++ +.||||.++ +
T Consensus 166 ~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g--~~~~~-~~~~~~pd---i~t~sK~l~-~ 238 (375)
T PRK04260 166 TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG--KLYAF-EHYGIEPD---IFTLAKGLA-N 238 (375)
T ss_pred eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc--chhhh-HhhCCCCC---EEEeccccc-C
Confidence 358888999999998754 5679999999999999999999998875432 11111 11122234 348999998 8
Q ss_pred ccccceEEEEc
Q 023599 269 GERVGALSVVR 279 (280)
Q Consensus 269 G~RvG~~v~~~ 279 (280)
|+|+||+++..
T Consensus 239 G~~ig~~~~~~ 249 (375)
T PRK04260 239 GVPVGAMLAKS 249 (375)
T ss_pred CcceEEEEEcH
Confidence 99999999863
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-14 Score=125.53 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeeeEE
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMKTY 164 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~~v 164 (280)
..|.+.+++.-.+ +.+++ +++|++|+..+ +++++++||+|+++...|.+....++ ..|+++.++
T Consensus 58 ~~le~~la~Le~g--------~~a~~--~~SGmaAi~~~--l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~ 125 (386)
T PF01053_consen 58 RALEQRLAALEGG--------EDALL--FSSGMAAISAA--LLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFV 125 (386)
T ss_dssp HHHHHHHHHHHT---------SEEEE--ESSHHHHHHHH--HHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEE
T ss_pred HHHHHHHHHhhcc--------cceee--ccchHHHHHHH--HHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEe
Confidence 4577777776322 45566 99999999999 88999999999999999988876666 468888777
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCC-ceeEEcccCCCcccCcCCChh
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKR-LLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~-~~ii~De~y~~~~~~~~~~~~ 243 (280)
+. -|.+.++++++++++ +|++.+|.||+. ...++++|+++|+++| +++++|+.+.....-
T Consensus 126 d~-------~d~~~l~~~l~~~t~---~v~~EspsNP~l---~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~------ 186 (386)
T PF01053_consen 126 DP-------TDLEALEAALRPNTK---LVFLESPSNPTL---EVPDLEAIAKLAKEHGDILVVVDNTFATPYNQ------ 186 (386)
T ss_dssp ST-------TSHHHHHHHHCTTEE---EEEEESSBTTTT---B---HHHHHHHHHHTTT-EEEEECTTTHTTTC------
T ss_pred Cc-------hhHHHHHhhccccce---EEEEEcCCCccc---ccccHHHHHHHHHHhCCceEEeeccccceeee------
Confidence 64 489999999987655 999999999995 5557888899999998 999999999665432
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
.. .+.+.. |++.|.||.++-+|--+|=+++
T Consensus 187 --~p-L~~GaD-ivv~S~TKyl~Ghsdv~~G~vv 216 (386)
T PF01053_consen 187 --NP-LELGAD-IVVHSATKYLSGHSDVMGGAVV 216 (386)
T ss_dssp ---G-GGGT-S-EEEEETTTTTTTSSSE-EEEEE
T ss_pred --cc-CcCCce-EEEeeccccccCCcceeeEEEE
Confidence 11 122222 6699999999756655554444
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=123.14 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~~ 162 (280)
....|.+.+++.- +. +..++ +++|++|+.++ +++++.+||+|++++..|.+....+ +..|+++.
T Consensus 63 t~~~le~~la~LE-g~-------~~a~~--~~SGmaAi~~~--~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~ 130 (395)
T PRK08114 63 THFSLQEAMCELE-GG-------AGCAL--YPCGAAAVANA--ILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTT 130 (395)
T ss_pred hHHHHHHHHHHHh-CC-------CeEEE--EhHHHHHHHHH--HHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEE
Confidence 3456778888762 11 44455 88899999999 8888999999999999997776654 56798888
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC--CceeEEcccCCCcccCcCC
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK--RLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~--~~~ii~De~y~~~~~~~~~ 240 (280)
+++. .|.+.++++++++++ +|++.+|+||||.+.+ +++|+++|+++ ++++++|.++..-..-
T Consensus 131 ~vd~-------~d~~~l~~~l~~~Tr---lV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~~--- 194 (395)
T PRK08114 131 WFDP-------LIGADIAKLIQPNTK---VVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVLF--- 194 (395)
T ss_pred EECC-------CCHHHHHHhcCCCce---EEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccccc---
Confidence 8764 367889999976654 9999999999998775 67778899997 4999999999653331
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccc-cccceE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGAL 275 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~ 275 (280)
...+.+.. +++.|.+|.++-+| +-.|.+
T Consensus 195 ------~pl~~GaD-ivv~S~tKyl~Ghsdv~~G~v 223 (395)
T PRK08114 195 ------KALDFGID-ISIQAGTKYLVGHSDAMIGTA 223 (395)
T ss_pred ------CHHHcCCc-EEEEcCcccccCCCcceeEEE
Confidence 01122223 66999999887676 566643
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-13 Score=119.81 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=120.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCe
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLA 160 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~ 160 (280)
.+....|.++++.+-. .++.+. +++|++|+..+ ++.++++||+|++++..|++....+ +.+|++
T Consensus 62 nPT~~~lE~~~a~LEg--------~~~~~a--fsSGmaAI~~~--~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~ 129 (396)
T COG0626 62 NPTRDALEEALAELEG--------GEDAFA--FSSGMAAISTA--LLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE 129 (396)
T ss_pred CccHHHHHHHHHHhhC--------CCcEEE--ecCcHHHHHHH--HHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeE
Confidence 4456678888888731 144555 99999999999 8999999999999999998876555 467888
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+.+++. .+.+.+++++.+ +++ +|++.+|+||| +...++.+|+++|+++|+++|+|+.|..-++..
T Consensus 130 ~~~~d~-------~~~~~~~~~~~~~~tk---~v~lEtPsNP~---l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~- 195 (396)
T COG0626 130 VTFVDP-------GDDEALEAAIKEPNTK---LVFLETPSNPL---LEVPDIPAIARLAKAYGALVVVDNTFATPVLQR- 195 (396)
T ss_pred EEEECC-------CChHHHHHHhcccCce---EEEEeCCCCcc---cccccHHHHHHHHHhcCCEEEEECCcccccccC-
Confidence 877764 245666666664 555 99999999999 566678899999999999999999998876631
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
. .+.+.. |++.|.||.++-++-=+|=+++
T Consensus 196 -------P-L~~GaD-IVvhSaTKyl~GHsDvl~G~v~ 224 (396)
T COG0626 196 -------P-LELGAD-IVVHSATKYLGGHSDVLGGVVL 224 (396)
T ss_pred -------h-hhcCCC-EEEEeccccccCCcceeeeEEe
Confidence 1 123322 6799999999877666655444
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=118.49 Aligned_cols=159 Identities=12% Similarity=0.038 Sum_probs=100.9
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh--------cCCCEEEEeCCCCCChHHHHHHc-CCeee---EEEeecCC---CCCc
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH--------YYQHTVYLSQPTYGNHPNFFAAA-GLAMK---TYHYYDPK---TNGL 174 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~--------~~Gd~Vli~~P~y~~~~~~~~~~-G~~~~---~v~~~~~~---~~~~ 174 (280)
+.+++ +++|++|.+.+..+.... ..+++|++.+-+|.+........ +.... +.+. .+. -...
T Consensus 89 ~~~~~--~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 165 (400)
T PTZ00125 89 DKVLP--MNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPF-VPGFELVDYN 165 (400)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCC-CCCceEeCCC
Confidence 56666 899999999994332210 13478888888887654333222 21100 0011 000 0113
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
|++.+++.+.. .+..+|++..++||||.+++ .+.+++|.++|++||+++|+||+|..+..... ... ....+...
T Consensus 166 d~~~le~~l~~--~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~--~~~-~~~~~~~p 240 (400)
T PTZ00125 166 DVEALEKLLQD--PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK--LLA-HDHEGVKP 240 (400)
T ss_pred CHHHHHHHhCC--CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hhH-HHhcCCCC
Confidence 89999998862 23457788888999999996 45599999999999999999999987755321 111 11112222
Q ss_pred eEEEEecccccccccccccceEEEEc
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.++ ++||.++..++|+||+++..
T Consensus 241 d~~---~~sK~l~~g~~~ig~v~~~~ 263 (400)
T PTZ00125 241 DIV---LLGKALSGGLYPISAVLAND 263 (400)
T ss_pred CEE---EEcccccCCCcCcEEEEEcH
Confidence 443 47899985446999998753
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-13 Score=116.71 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=145.8
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC--CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP--ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
+.+.+.|..+. +.+-.+.+.+++.........++... .|.. ..+.+..|+.+|+++.... .+|++ |.
T Consensus 41 ~~~~vyld~~a--t~p~~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~------~dIiF--ts 109 (428)
T KOG1549|consen 41 GTRPVYLDNQA--TGPMDPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADP------SDIVF--TS 109 (428)
T ss_pred CCccEEEecCc--CCCCCHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCC------CcEEE--eC
Confidence 34566666665 22222334444444444444333322 2333 4447889999999986553 55888 99
Q ss_pred cchhHHHHHHHHHHhhc-CCC----EEEEeCCCCCChHHHHH---HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCc
Q 023599 119 SGSGSLRIGADFLAKHY-YQH----TVYLSQPTYGNHPNFFA---AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGA 190 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~-~Gd----~Vli~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~ 190 (280)
|+|++++++ +..... .+| .|++.+-.|+.....++ ..|++++++|. + +++-.|.+.+++.++++++
T Consensus 110 ~ATEs~Nlv--l~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv-~-~~~~~d~~~~~~~i~~~T~-- 183 (428)
T KOG1549|consen 110 GATESNNLV--LKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPV-E-DSGLVDISKLREAIRSKTR-- 183 (428)
T ss_pred CchHHHHHH--HHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEecc-C-ccccccHHHHHHhcCCCce--
Confidence 999999999 666543 666 89999888877655544 56999999999 3 5667899999999998766
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
++.+..-||-+|++++. ++|+++|+++++.+++|.+.+--... -.+.+.+.. ....|.-|.||.+|
T Consensus 184 -lv~I~~Vnn~~gv~~Pv---~EI~~icr~~~v~v~~DaAQavG~i~--------vDV~eln~D-~~s~s~HK~ygp~~- 249 (428)
T KOG1549|consen 184 -LVSIMHVNNEIGVLQPV---KEIVKICREEGVQVHVDAAQAVGKIP--------VDVQELNAD-FLSISAHKIYGPPG- 249 (428)
T ss_pred -EEEEEecccCccccccH---HHHHHHhCcCCcEEEeehhhhcCCcc--------ccHHHcCch-heeeecccccCCCc-
Confidence 88888899999999985 56688999999999999988554332 112222222 34667889999999
Q ss_pred ccceEEEEc
Q 023599 271 RVGALSVVR 279 (280)
Q Consensus 271 RvG~~v~~~ 279 (280)
+|++.+..
T Consensus 250 -iGaLYvr~ 257 (428)
T KOG1549|consen 250 -IGALYVRR 257 (428)
T ss_pred -ceEEEEcc
Confidence 99988763
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=121.83 Aligned_cols=156 Identities=14% Similarity=0.118 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH----HHHHHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP----NFFAAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~----~~~~~~G~~~~~ 163 (280)
...|++.++++... +..++ +++|+.|+.++ +++++.+||+|+++...|.... ..+...|+++++
T Consensus 71 ~~~le~~la~l~g~--------~~~v~--fsSG~~Ai~~a--l~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~ 138 (437)
T PRK05613 71 VEALENRIASLEGG--------VHAVA--FASGQAAETAA--ILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTF 138 (437)
T ss_pred HHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEE
Confidence 56788888888532 22333 67777999888 7777899999999999998764 344678999988
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++. + .|++.++++++++++ +|++.++.||+|.+.+ +++|+++|+++|+++|+|.++...... .
T Consensus 139 vd~--~----~d~e~l~~~l~~~tk---~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~---~-- 201 (437)
T PRK05613 139 VEN--P----DDPESWQAAVQPNTK---AFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAALV---R-- 201 (437)
T ss_pred ECC--C----CCHHHHHHhCCccCe---EEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcccccc---C--
Confidence 872 2 278999999987654 6777889999997776 667788999999999999998543221 0
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+ . +.+. =+++.|++|.++-+|.-+|-+++
T Consensus 202 p-~---~~Ga-Divv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 202 P-L---ELGA-DVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred h-H---HhCC-CEEEeeccceecCCCcceeEEEE
Confidence 0 1 2222 36688999999877877777666
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=118.70 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh---hcCCCEEEEeCCCCCCh----HHHHHHcCC
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK---HYYQHTVYLSQPTYGNH----PNFFAAAGL 159 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~---~~~Gd~Vli~~P~y~~~----~~~~~~~G~ 159 (280)
-+++.|+.+++++.... .++|++ |.|+|++++++ ..++ +.+||+|++.+-.|+.. ....+..|+
T Consensus 67 ~~e~aRe~va~~~~a~~-----~~eIvf--t~~tT~aln~v--a~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga 137 (405)
T COG0520 67 LYEAAREAVARFLNADS-----SDEIVF--TRGTTEALNLV--ARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGA 137 (405)
T ss_pred HHHHHHHHHHHHhCCCC-----CCeEEE--eCChhHHHHHH--HHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCc
Confidence 35678999999975431 378888 99999999999 4554 68999999999887554 444456799
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.+|+ + +++.++.+.+++.+.++++ +|.++.-+|.||++.+ +++|+++|+++|+++++|.+.+--....+
T Consensus 138 ~v~~i~~-~-~~g~~~~~~~~~~i~~~Tk---lvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~~id 209 (405)
T COG0520 138 KVRVIPL-D-DDGLLDLDALEKLITPKTK---LVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHLPID 209 (405)
T ss_pred EEEEEec-C-CCCCcCHHHHHHhcCCCce---EEEEECccccccccch---HHHHHHHHHHcCCEEEEECccccCccCCC
Confidence 9999999 4 5678999999998887766 9999999999999876 67779999999999999998755544311
Q ss_pred CChhHHHHhhhcCCeEEEEecccc-cccccccccceEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSK-TMGLYGERVGALSV 277 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK-~~~~~G~RvG~~v~ 277 (280)
+.+.+ -=.+..|--| .+| | --+|.+.+
T Consensus 210 --------v~~l~-~Df~afsgHKwl~g-P-~GiGvLy~ 237 (405)
T COG0520 210 --------VQELG-CDFLAFSGHKWLLG-P-TGIGVLYV 237 (405)
T ss_pred --------chhcC-CCEEEEcccccccC-C-CceEEEEE
Confidence 11111 2256888899 666 4 23555544
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-13 Score=114.19 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=126.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCe
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLA 160 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~ 160 (280)
.+....|.+.++.. + ..+..+++.+|+.|+..+ ++++..+||.|+-..--|++....+ +.+|++
T Consensus 61 NPT~~vlE~RiAaL---E-------GG~aa~a~aSG~AA~~~a--i~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~ 128 (426)
T COG2873 61 NPTTDVLEERIAAL---E-------GGVAALAVASGQAAITYA--ILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIE 128 (426)
T ss_pred CchHHHHHHHHHHh---h-------cchhhhhhccchHHHHHH--HHHhccCCCeeEeeccccCchHHHHHHHHHhcCcE
Confidence 44566788888887 2 222334499999999999 9999999999999999898865554 578999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
+.+++- .|++.++++++++++ +|+..+-.||-+.+++ +++|.++|+++++.+|+|..+..-+.
T Consensus 129 v~fvd~-------~d~~~~~~aI~~nTk---avf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl---- 191 (426)
T COG2873 129 VRFVDP-------DDPENFEAAIDENTK---AVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYL---- 191 (426)
T ss_pred EEEeCC-------CCHHHHHHHhCcccc---eEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCccee----
Confidence 998875 379999999999987 8999999999988775 67889999999999999999866322
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
....+.+.+ |++.|+||..|-.|--+|=+++
T Consensus 192 -----~rP~~hGAD-IVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 192 -----CRPIEHGAD-IVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred -----cchhhcCCC-EEEEeecccccCCccccceEEE
Confidence 111234444 5599999999999999998776
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=118.06 Aligned_cols=159 Identities=19% Similarity=0.145 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEE
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYH 165 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~ 165 (280)
-...|.+.+++++.. ++++. +++|+.|+.++ +.++ +.+||+|++|..+|......+...|++++.++
T Consensus 26 ~~~~fE~~~a~~~g~--------~~~~~--~~sgt~Al~~a--l~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~D 93 (363)
T PF01041_consen 26 YVEEFEKEFAEYFGV--------KYAVA--VSSGTSALHLA--LRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVD 93 (363)
T ss_dssp HHHHHHHHHHHHHTS--------SEEEE--ESSHHHHHHHH--HHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-
T ss_pred HHHHHHHHHHHHhCC--------CeEEE--eCChhHHHHHH--HHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEe
Confidence 367899999999742 55565 99999999999 5554 35899999999999999999999999999999
Q ss_pred eecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 166 YYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
+ +++++.+|++.++++++++++ +|++ .+.-|... ++.+|.++|+++|++||+|.+......-..
T Consensus 94 i-~~~~~~id~~~~~~~i~~~t~---ai~~---~h~~G~~~---d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g------ 157 (363)
T PF01041_consen 94 I-DPETLNIDPEALEKAITPKTK---AILV---VHLFGNPA---DMDAIRAIARKHGIPLIEDAAQAFGARYKG------ 157 (363)
T ss_dssp B-ETTTSSB-HHHHHHHHHTTEE---EEEE---E-GGGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETT------
T ss_pred c-cCCcCCcCHHHHHHHhccCcc---EEEE---ecCCCCcc---cHHHHHHHHHHcCCcEEEccccccCceeCC------
Confidence 9 688999999999999998763 4443 22334322 688999999999999999999877654111
Q ss_pred HHhhhcCCeEEEEecc--cccccccccccceEEE
Q 023599 246 RMFVADGGECLVAQSY--SKTMGLYGERVGALSV 277 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~--SK~~~~~G~RvG~~v~ 277 (280)
+.+-..++ +.+.|| +|.+. +|. -|.+++
T Consensus 158 ~~~G~~gd--~~~fSf~~~K~i~-~ge-GG~v~~ 187 (363)
T PF01041_consen 158 RPVGSFGD--IAIFSFHPTKIIT-TGE-GGAVVT 187 (363)
T ss_dssp EETTSSSS--EEEEESSTTSSS--SSS--EEEEE
T ss_pred EeccCCCC--ceEecCCCCCCCc-CCC-CeeEEe
Confidence 11212233 445555 78884 443 366655
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=113.21 Aligned_cols=207 Identities=16% Similarity=0.070 Sum_probs=128.7
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCC----HHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGL----PEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~----~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
...++|+..+| -++..-+...+++.+.+.+-......-.-..|. .+|.+.+|+|+.. +..++ .
T Consensus 102 r~~l~FsSndY---LGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~--------e~all--~ 168 (476)
T PLN02955 102 KKLLLFSGNDY---LGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKK--------EDCLV--C 168 (476)
T ss_pred ceEEEeeccCc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCC--------CcEEE--E
Confidence 36799998888 444444444444444443101000111112344 6799999999632 55565 7
Q ss_pred ccchhHHHHHHHHHHhh--------------cCCCEEEEeCCCCCChHHHHHHc----CCeeeEEEeecCCCCCcCHHHH
Q 023599 118 LSGSGSLRIGADFLAKH--------------YYQHTVYLSQPTYGNHPNFFAAA----GLAMKTYHYYDPKTNGLDFQGM 179 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~--------------~~Gd~Vli~~P~y~~~~~~~~~~----G~~~~~v~~~~~~~~~~d~~~l 179 (280)
++|..|...+ +.++. ..+|.|+.-.-.+.....-++.. ++++..++. .|++.|
T Consensus 169 sSGy~AN~~~--i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~L 239 (476)
T PLN02955 169 PTGFAANMAA--MVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHL 239 (476)
T ss_pred CChHHHHHHH--HHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHH
Confidence 7777777766 44431 23445555444444444455544 355555543 489999
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhhcCCeEEEE
Q 023599 180 LQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVADGGECLVA 258 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 258 (280)
++.++..+.+.++|+...--++.|.+.+ +++|.++|++||.++|+||+|..+..... .... ..+.-..+..|++
T Consensus 240 e~~L~~~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~--e~~g~~~di~ii~ 314 (476)
T PLN02955 240 NSLLSSCKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVA--EEFNCEADVDLCV 314 (476)
T ss_pred HHHHHhCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHH--HHhCCCCCCcEEE
Confidence 9998765444567777777899999888 56667888999999999999998887531 1221 1111123577999
Q ss_pred ecccccccccccccceEEEE
Q 023599 259 QSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~ 278 (280)
+||||.+| .+-||+++.
T Consensus 315 ~TLsKA~G---~~GGfi~gs 331 (476)
T PLN02955 315 GTLSKAAG---CHGGFIACS 331 (476)
T ss_pred EeCccchh---ccCceeecH
Confidence 99999975 456887664
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.3e-12 Score=114.27 Aligned_cols=159 Identities=11% Similarity=0.150 Sum_probs=104.0
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-cCC-------------eeeEEEeecCCCCCc-
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-AGL-------------AMKTYHYYDPKTNGL- 174 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~G~-------------~~~~v~~~~~~~~~~- 174 (280)
+.+.+ +++|++|.+.+..+........+|+...-+|.+....... .|. .+..+|..+.. .+.
T Consensus 102 ~~~~f--~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~ 178 (421)
T PRK09792 102 AKTAF--FTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGIS 178 (421)
T ss_pred ceEEE--eCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-cccc
Confidence 46666 8899999999955443322235788888888775332221 111 12223331111 112
Q ss_pred ---CHHHHHHHHhcC--CCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh
Q 023599 175 ---DFQGMLQDLGAA--PSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF 248 (280)
Q Consensus 175 ---d~~~l~~~~~~~--~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 248 (280)
+++.+++.+.+. .++..++++..-++|+|..+ +.+.+++|.++|++|++++|+||++..|.... ...+...+
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G--~~~a~~~~ 256 (421)
T PRK09792 179 TQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG--KLFAMDHY 256 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC--chhHHHhc
Confidence 347788877631 23344556555689999876 89999999999999999999999999986642 22333333
Q ss_pred hhcCCeEEEEecccccccccccccceEEEE
Q 023599 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.... +.+|||.++ +|+|+||+++.
T Consensus 257 -~~~pD---i~t~gK~l~-~G~pigav~~~ 281 (421)
T PRK09792 257 -ADKPD---LMTMAKSLA-GGMPLSGVVGN 281 (421)
T ss_pred -CCCCc---EEEeehhhc-CCCceEEEEEc
Confidence 21223 689999998 99999998874
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-12 Score=112.44 Aligned_cols=128 Identities=17% Similarity=0.106 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEE
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYH 165 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~ 165 (280)
-..+|.+++++|+.- .+.+. +++||.|+.++ +.++ +.|||+|+++.-+|....+.+...|+++++++
T Consensus 35 ~v~~FE~~~ae~~G~--------k~ava--~~sgT~AL~la--L~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvD 102 (374)
T COG0399 35 FVRRFEQAFAEYLGV--------KYAVA--VSSGTAALHLA--LLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVD 102 (374)
T ss_pred HHHHHHHHHHHHhCC--------CeEEE--ecChHHHHHHH--HHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEe
Confidence 367899999999633 33444 99999999999 5532 68999999999999999999999999999999
Q ss_pred eecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 166 YYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
+ |++++.+|.+.++++++++++ + ++.+--.-||. ++.+|.++|++||++||+|.+.+....
T Consensus 103 i-d~~T~nid~~~ie~aIt~~tK-A-IipVhl~G~~~-------dm~~i~~la~~~~l~vIEDaAqa~Ga~ 163 (374)
T COG0399 103 I-DPDTLNIDPDLIEAAITPRTK-A-IIPVHLAGQPC-------DMDAIMALAKRHGLPVIEDAAQAHGAT 163 (374)
T ss_pred c-CCcccCCCHHHHHHHcccCCe-E-EEEehhccCCC-------CHHHHHHHHHHcCCeEEEEcchhccCe
Confidence 9 788999999999999998854 2 33322233333 688889999999999999999866543
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-12 Score=116.03 Aligned_cols=212 Identities=15% Similarity=0.084 Sum_probs=133.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|.....-|+ ..+..++++.+++. .. ...|.+..+..+|.+.+++.+- ..+.+.+ +++
T Consensus 48 dG~~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~--~~-~~~~~~~~~~~~la~~L~~~~~-------~~~~v~~--~~s 114 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGH-AHPEVVEAVIEAAE--KG-LSFGAPTELEVELAELVIELVP-------SIEMVRM--VNS 114 (426)
T ss_pred CCCEEEEcccchhhhhcCC-CCHHHHHHHHHHHH--hC-CcCCCCCHHHHHHHHHHHHhCC-------CCCEEEE--ecC
Confidence 4678999998864222233 33344444445554 22 2335555566677777777641 1266777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc--------C-----Ceee-----EEEeecCCCCCcCHHHHHH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA--------G-----LAMK-----TYHYYDPKTNGLDFQGMLQ 181 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~--------G-----~~~~-----~v~~~~~~~~~~d~~~l~~ 181 (280)
|++|++.+..+......+++|+..+++|.++...+... + .... .+.. + ..|++.+++
T Consensus 115 GseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~d~~~l~~ 189 (426)
T PRK00062 115 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA--P---YNDLEAVEE 189 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEc--C---CCCHHHHHH
Confidence 99999999443322334579999999999876333221 1 0000 0111 1 137889998
Q ss_pred HHhcCCCCcEEEEec-CCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEe
Q 023599 182 DLGAAPSGAIVLLQA-SGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQ 259 (280)
Q Consensus 182 ~~~~~~~~~~~v~~~-~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (280)
.+.+...+..++++. .++| +|.+.+ .+.+++|.++|++|++++|+||+|..+..+. ... ....+..+. +.
T Consensus 190 ~i~~~~~~~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~---~~~-~~~~~~~pD---i~ 261 (426)
T PRK00062 190 LFEEYGDEIAAVIVEPVAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL---GGA-QGYYGVTPD---LT 261 (426)
T ss_pred HHHhCCCcEEEEEEeCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC---ccH-HHHhCCCcc---hH
Confidence 886543334444444 5555 787776 7889999999999999999999998874431 111 122222223 46
Q ss_pred cccccccccccccceEEEE
Q 023599 260 SYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v~~ 278 (280)
+|||.++ .||++|++++.
T Consensus 262 ~~gK~l~-~G~p~ga~~~~ 279 (426)
T PRK00062 262 TLGKIIG-GGLPVGAFGGR 279 (426)
T ss_pred hhhhHhh-CCCcceeeeEH
Confidence 8999998 89999998764
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-12 Score=113.34 Aligned_cols=217 Identities=14% Similarity=0.027 Sum_probs=122.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|.-...-|+- .++.++++.+++. .. .+ +.. ....+....+++.+..... .+.+.+ +++
T Consensus 13 dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~--~~-~~-~~~-~~~~~~~~~la~~l~~~~~----~~~v~f--~~s 80 (382)
T PLN00144 13 EGKEYLDMAAGIAVNALGHG-DPDWVKAVAEQAG--TL-AH-VSN-VYHTIPQVELAKRLVASSF----ADRVFF--CNS 80 (382)
T ss_pred CCCEEEECCcCHHhccCCCC-CHHHHHHHHHHHH--hc-CC-ccc-cccCHHHHHHHHHHHhcCC----CCeEEE--eCC
Confidence 45678888776421112221 2334444444443 11 11 111 1112233445555433221 257777 999
Q ss_pred chhHHHHHHHHHHhhcC-------------CCEEEEeCCCCCChHHHHHHcCCee----eEEEeecCCC---CCcCHHHH
Q 023599 120 GSGSLRIGADFLAKHYY-------------QHTVYLSQPTYGNHPNFFAAAGLAM----KTYHYYDPKT---NGLDFQGM 179 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~-------------Gd~Vli~~P~y~~~~~~~~~~G~~~----~~v~~~~~~~---~~~d~~~l 179 (280)
|++|.+.+..+...... ..+|+...-+|.+............ .+.+. .+.. ...|++.+
T Consensus 81 GseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~d~~~l 159 (382)
T PLN00144 81 GTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPL-MPGVTFVEYGNLEAA 159 (382)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCC-CCCeEEeCCCCHHHH
Confidence 99999998544332110 2478888888877643333221110 00111 0000 01268899
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCCCCCCHHH--HHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 180 LQDLGAAPSGAIVLLQASGHNPTGIDPTAQQ--WEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~--l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
++.+... +...+++-+. +|| |.+++.+. +++|.++|++||+++|+||+|..|..... ..+ ..+.+..+.
T Consensus 160 ~~~~~~~-~~aavi~eP~-q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~--~~~-~~~~~~~PD--- 230 (382)
T PLN00144 160 RKLIQKG-KTAAVFVEPV-QGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY--LWA-HEAYGVEPD--- 230 (382)
T ss_pred HHhcCCC-CeEEEEEccc-cCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--Hhh-hhhcCCCCC---
Confidence 9888533 2334555554 889 55566555 99999999999999999999998866421 111 112222223
Q ss_pred EecccccccccccccceEEEEc
Q 023599 258 AQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+.+|||.++ +|+|+||+++..
T Consensus 231 i~t~sK~l~-~G~pig~v~~~~ 251 (382)
T PLN00144 231 IMTLAKPLA-GGLPIGAVLVTE 251 (382)
T ss_pred EEEeccccc-CCcceEEEEEcH
Confidence 889999998 899999999853
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-11 Score=112.24 Aligned_cols=211 Identities=13% Similarity=0.132 Sum_probs=122.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|...+.-|+ -.++.+++..+++.+-......| +..-..+|.+.++++. . .+.+.+ +++
T Consensus 33 dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~la~~L~~~~----~----~~~~~f--~~S 100 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIGNGY-TNEPVLRLAKKLVDAT----F----ADKVFF--CNS 100 (397)
T ss_pred CCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC----C----CCEEEE--eCC
Confidence 4567899987632122344 23444444444444100001111 1112234555555542 1 257777 999
Q ss_pred chhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHHH-HHcCCe------------eeEEEeecCCCCCcCHHHHH
Q 023599 120 GSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNFF-AAAGLA------------MKTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 120 ~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~~-~~~G~~------------~~~v~~~~~~~~~~d~~~l~ 180 (280)
|++|.+.+..+.... .+| ++|+..+-+|.+..... ...|.. +..++. .|++.++
T Consensus 101 GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~ 173 (397)
T TIGR03246 101 GAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAK 173 (397)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHH
Confidence 999999995443222 133 57888888887654332 222211 112221 3789999
Q ss_pred HHHhcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEe
Q 023599 181 QDLGAAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQ 259 (280)
Q Consensus 181 ~~~~~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (280)
+.+.++ .++|++...+++.|... +.+.+++|.++|++||+++|.||+|..+..... ......+ +....+ -
T Consensus 174 ~~l~~~---~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~--~~a~~~~-gv~pDi---~ 244 (397)
T TIGR03246 174 ALISDK---TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE--LYAYMHY-GVTPDI---L 244 (397)
T ss_pred HHhccC---eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc--chhhhhc-CCCCCE---E
Confidence 988643 33666664444455443 899999999999999999999999977744321 1111111 222233 3
Q ss_pred cccccccccccccceEEEEc
Q 023599 260 SYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v~~~ 279 (280)
++||.++ .|+++||++...
T Consensus 245 t~~K~lg-gG~pigav~~~~ 263 (397)
T TIGR03246 245 TSAKALG-GGFPIGAMLTTT 263 (397)
T ss_pred Eeehhhh-CCcceeEEEEcH
Confidence 7899998 899999998753
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-11 Score=112.13 Aligned_cols=223 Identities=15% Similarity=0.139 Sum_probs=124.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|.-...-|+. .+..+++..+++. .. ..+.......+.+..+++.+...-.. ..+.+.+ +++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~--~~--~~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f--~~s 109 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHN-NPRVVKAIKEQTD--KL--IHYTPIYGFPVEPLLLAEKLIEIAPG--DNPKVSF--GLS 109 (443)
T ss_pred CCCEEEEccccHhhcccCCC-CHHHHHHHHHHHH--hc--cCccccccCcHHHHHHHHHHHHhCCC--CCCEEEE--cCC
Confidence 45678999877421222321 2333344444443 11 11111112223344455544332111 1156777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-HHHcCC------------eeeEEEeecCCC--CC--------cCH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-FAAAGL------------AMKTYHYYDPKT--NG--------LDF 176 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-~~~~G~------------~~~~v~~~~~~~--~~--------~d~ 176 (280)
|++|.+.+..+........+|+.-.-+|.+.... +...|. .+.+++..+... +. .+.
T Consensus 110 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08360 110 GSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV 189 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH
Confidence 9999999955433322335777777778665322 221121 123333311100 10 124
Q ss_pred HHHHHHHhcC--CCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 177 QGMLQDLGAA--PSGAIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 177 ~~l~~~~~~~--~~~~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
+.+++.+... ..+.+++++..-+||+|.+++ .+.+++|.++|++||+++|+||+|..|.... ...+...+ +..+
T Consensus 190 ~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G--~~~a~~~~-~~~p 266 (443)
T PRK08360 190 EYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTG--KWFAIEHF-GVEP 266 (443)
T ss_pred HHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc--cchhhhhc-CCCC
Confidence 5566666531 234556666656799999888 5579999999999999999999999886532 11111122 3334
Q ss_pred eEEEEecccccccccccccceEEEE
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++ ++||.++ +|+|+||+++.
T Consensus 267 Dii---tlsK~l~-~G~pigav~~~ 287 (443)
T PRK08360 267 DII---TLGKPLG-GGLPISATIGR 287 (443)
T ss_pred CEE---Eeccccc-CCceeEEEEEc
Confidence 554 6799999 99999999875
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=111.23 Aligned_cols=219 Identities=11% Similarity=-0.020 Sum_probs=126.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|.-...-|+ -.+..++++.+++. .. .+ +..... .+....+++.+...... .+.+.+ +++
T Consensus 38 dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~--~~-~~-~~~~~~-~~~~~~la~~L~~~~~~---~~~v~f--~~s 106 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGH-NDPDLVAALTEQAG--KL-WH-TSNVFY-SAPPLKLAEELVTASRF---AEKVFL--CNS 106 (408)
T ss_pred CCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHH--hc-cc-cccccC-CHHHHHHHHHHHhhCCC---CCEEEE--cCc
Confidence 4567899977742111222 12333344444443 11 11 111111 22334455554432111 257777 999
Q ss_pred chhHHHHHHHHHHhh----c--CC-CEEEEeCCCCCChHHHHHH-cCCee---eEEEeecC--CCCCcCHHHHHHHHhcC
Q 023599 120 GSGSLRIGADFLAKH----Y--YQ-HTVYLSQPTYGNHPNFFAA-AGLAM---KTYHYYDP--KTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 120 ~~~al~~~~~~~~~~----~--~G-d~Vli~~P~y~~~~~~~~~-~G~~~---~~v~~~~~--~~~~~d~~~l~~~~~~~ 186 (280)
|++|.+.+.++.... . ++ .+|+...-+|.+....... .|-.. .+-+.... .-...|.+.+++.+..+
T Consensus 107 GseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 186 (408)
T PRK04612 107 GTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGG 186 (408)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCC
Confidence 999999995544322 1 22 3688888888776433322 12110 00111000 00113788888888532
Q ss_pred CCCcEEEEecCCCCCCCCCCC--HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPT--AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~--~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
.+..++..|.+++|.+++ .+.+++|.++|++|++++|+||+|..|.... .. .... ....+..+.+|||.
T Consensus 187 ---~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~---~a~~-~~~~~pdi~t~~K~ 257 (408)
T PRK04612 187 ---DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG--TL---FAHW-QEQVTPDIVTLAKA 257 (408)
T ss_pred ---CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC--ch---hhhh-hcCCCCCEEEEcch
Confidence 234555568888987777 5689999999999999999999999876532 11 1111 22346678899999
Q ss_pred ccccccccceEEEEc
Q 023599 265 MGLYGERVGALSVVR 279 (280)
Q Consensus 265 ~~~~G~RvG~~v~~~ 279 (280)
++ +|+|+||+++..
T Consensus 258 l~-~G~piga~~~~~ 271 (408)
T PRK04612 258 LG-GGFPIGAMLAGP 271 (408)
T ss_pred hc-CCCceEEEEECH
Confidence 98 899999998753
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-12 Score=111.33 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=119.0
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~ 162 (280)
....|.+.+++.... .+.++ .++|+.|+..+ ++.++..|++|+..+..|.+....++ .+|++..
T Consensus 78 t~~~le~~iaal~ga--------~~~l~--fsSGmaA~~~a--l~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~ 145 (409)
T KOG0053|consen 78 TRDVLESGIAALEGA--------AHALL--FSSGMAAITVA--LLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGD 145 (409)
T ss_pred chHHHHHHHHHHhCC--------ceEEE--ecccHHHHHHH--HHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceee
Confidence 345677777776322 44555 99999999999 88889999999999999999877766 4677777
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.+++ -|++.+++++.++++ +|++.+|.||+..+. ++++|.++|+++|+++++|+.+...+... +
T Consensus 146 ~vd~-------~~~~~~~~~i~~~t~---~V~~ESPsNPll~v~---DI~~l~~la~~~g~~vvVDnTf~~p~~~~---p 209 (409)
T KOG0053|consen 146 FVDV-------DDLKKILKAIKENTK---AVFLESPSNPLLKVP---DIEKLARLAHKYGFLVVVDNTFGSPYNQD---P 209 (409)
T ss_pred eech-------hhHHHHHHhhccCce---EEEEECCCCCccccc---cHHHHHHHHhhCCCEEEEeCCcCcccccC---h
Confidence 7766 368889999887666 999999999997765 56777888889999999999998885531 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
. ..+.. |++.|.||.++-.+-=+|=+++
T Consensus 210 ---L---~lGAD-IV~hSaTKyi~Ghsdvi~G~iv 237 (409)
T KOG0053|consen 210 ---L---PLGAD-IVVHSATKYIGGHSDVIGGSVV 237 (409)
T ss_pred ---h---hcCCC-EEEEeeeeeecCCcceeeeEEe
Confidence 1 22222 6699999999866655554444
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-11 Score=110.34 Aligned_cols=211 Identities=18% Similarity=0.151 Sum_probs=133.3
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCC---CC--CHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPI---TG--LPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~G--~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
..+||.+-..+.++.+.+..++.+.+++.+... .....+|... .| +..+++.+++++.. ++.++
T Consensus 79 r~vinatg~v~~tNlg~s~l~~~v~eav~~~~~-~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--------e~a~v-- 147 (464)
T PRK04311 79 RPVINATGVVLHTNLGRALLSEAAIEAVTEAAR-GYSNLEYDLATGKRGSRDRALAALLCALTGA--------EDALV-- 147 (464)
T ss_pred cceecCCccEEeccCCCCCCCHHHHHHHHHHHh-cccccccchhhcccchHHHHHHHHHHHHhCC--------CeEEE--
Confidence 567887644444444555555555555545442 2212223221 12 25788888887522 34455
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC------hHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCc
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN------HPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGA 190 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~------~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~ 190 (280)
+++++.|+.++ + ..+.+||+|++++..+.. ....++..|+++++++. .. ..+++.+++++.++++
T Consensus 148 v~sgtaAl~l~--l-~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~-~~---~t~~~dle~aI~~~Tk-- 218 (464)
T PRK04311 148 VNNNAAAVLLA--L-NALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGT-TN---RTHLRDYEQAINENTA-- 218 (464)
T ss_pred ECCHHHHHHHH--H-HHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECC-CC---CCCHHHHHHhcCccCe--
Confidence 88888999888 5 346899999999753321 23456778999999876 22 3578999999987655
Q ss_pred EEEEecCCCCCC--CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc----cCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 191 IVLLQASGHNPT--GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV----MNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 191 ~~v~~~~p~NPT--G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
++++.+++||+ |.. ...++++|+++|++||+++|+|...+.+. +... ..+.+....+.+.. ++++|.+|.
T Consensus 219 -lV~~vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~-~~p~~~~~l~~GaD-iv~fSg~K~ 294 (464)
T PRK04311 219 -LLLKVHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLP-DEPTVQELLAAGVD-LVTFSGDKL 294 (464)
T ss_pred -EEEEEcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCC-CCCchhhHHhcCCc-EEEecCccc
Confidence 78888899994 422 23458888999999999999999644331 1100 01122333333334 668999999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
+|-| ..|++++.
T Consensus 295 LgGp--~~G~i~g~ 306 (464)
T PRK04311 295 LGGP--QAGIIVGK 306 (464)
T ss_pred ccCC--ceEEEEEc
Confidence 8744 58887764
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=110.04 Aligned_cols=164 Identities=19% Similarity=0.165 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh---hcCCCEEEEeCCCCCChH----HHHHHcCCe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK---HYYQHTVYLSQPTYGNHP----NFFAAAGLA 160 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~---~~~Gd~Vli~~P~y~~~~----~~~~~~G~~ 160 (280)
..+.|+.+++++.... +++|++ +.|++.+++.+ +.++ +.+||+|++.+-.|+... ...+..|++
T Consensus 45 ~~~~r~~la~~lg~~~-----~~~v~~--~~~~t~a~~~~--~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~ 115 (371)
T PF00266_consen 45 LEEAREALAKLLGAPP-----DEEVVF--TSNGTEALNAV--ASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAE 115 (371)
T ss_dssp HHHHHHHHHHHHTSST-----TEEEEE--ESSHHHHHHHH--HHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhcCCcc-----cccccc--ccccchhhhhh--hhccccccccccccccccccccccccccccccccchhh
Confidence 3578888888874331 167777 99999999999 6666 689999999998886655 333467999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
+..++. + .+..+|++.+++++.++++ +++++..+|-||...+ +++|.++|+++++++++|.+.+-...+.
T Consensus 116 v~~i~~-~-~~~~~~~~~~~~~l~~~~~---lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~i-- 185 (371)
T PF00266_consen 116 VRVIPA-D-PGGSLDLEDLEEALNPDTR---LVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVPI-- 185 (371)
T ss_dssp EEEEEE-G-TTSSCSHHHHHHHHHTTES---EEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS---
T ss_pred hccccc-c-ccchhhhhhhhhhhccccc---eEEeecccccccEEee---eceehhhhhccCCceeEechhccccccc--
Confidence 999998 3 3457899999999986665 8888888999999887 5567889999999999999987654431
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+.+.+.. +++.|.-|.+|.+| +|++++..
T Consensus 186 ------d~~~~~~D-~~~~s~~Kl~gp~G--~g~l~v~~ 215 (371)
T PF00266_consen 186 ------DLDELGAD-FLVFSSHKLGGPPG--LGFLYVRP 215 (371)
T ss_dssp -------TTTTTES-EEEEESTSTTSSST--EEEEEEEH
T ss_pred ------cccccccc-eeeecccccCCCCc--hhhheehh
Confidence 12122212 56889999555454 68887653
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-11 Score=110.43 Aligned_cols=223 Identities=9% Similarity=0.051 Sum_probs=124.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCC--CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEY--LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+...+|+..|.-...-|+. .++.++++.+++. +.....+ .+.....+|.+.+++..-+. ..+.+.+ +
T Consensus 31 dG~~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~--~~~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f--~ 100 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHS-HPRVVDAVRTQVA--EFTHTCFMVTPYEGYVALAEKLNRIAPGS-----GPKKSVF--F 100 (420)
T ss_pred CCCEEEECccCHHhccCCCC-CHHHHHHHHHHHH--hccCccccccCChHHHHHHHHHHHhCCCC-----CCCEEEE--e
Confidence 45678998777431222322 2344444444444 2111111 11111234444444442111 1156777 9
Q ss_pred ccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-C--------C-----eeeEEEeecCCC---------CCc
Q 023599 118 LSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-G--------L-----AMKTYHYYDPKT---------NGL 174 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G--------~-----~~~~v~~~~~~~---------~~~ 174 (280)
++|++|++.+..+........+|+...-+|.+........ | . .+..++..+... +.-
T Consensus 101 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (420)
T TIGR00700 101 NSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDG 180 (420)
T ss_pred CCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHH
Confidence 9999999999554433333357888888887754332221 1 1 112222200000 001
Q ss_pred CHHHHHHHHh--cCCCCcEEEEecCCCCCCCCCCCHHH-HHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc
Q 023599 175 DFQGMLQDLG--AAPSGAIVLLQASGHNPTGIDPTAQQ-WEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD 251 (280)
Q Consensus 175 d~~~l~~~~~--~~~~~~~~v~~~~p~NPTG~~~~~~~-l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 251 (280)
+++.+++.+. ..+++...|++..-+.-+|..++..+ +++|.++|++|++++|+||+|..|.... ...+.... +.
T Consensus 181 ~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g--~~~a~~~~-~~ 257 (420)
T TIGR00700 181 ELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG--AMFACEHE-GP 257 (420)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc--hhHHHhhc-CC
Confidence 2456776663 22344566666666666788765555 9999999999999999999999987642 12121111 11
Q ss_pred CCeEEEEecccccccccccccceEEEEc
Q 023599 252 GGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 252 ~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
... +.+|||.++ +|+|+||+++..
T Consensus 258 ~pD---i~~lsK~l~-~G~pig~v~~~~ 281 (420)
T TIGR00700 258 EPD---LITTAKSLA-DGLPLSGVTGRA 281 (420)
T ss_pred CCC---EEEeecccc-CCcceEEEEecH
Confidence 223 456999999 999999998753
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-11 Score=110.98 Aligned_cols=213 Identities=11% Similarity=0.085 Sum_probs=127.8
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+...+||..|.....-|+ -.+..++++.+++.+ -.....+.......+|.+.+++++ + .+.+++ +++|
T Consensus 74 G~~ylD~~sg~~~~~~Gh-~~p~v~~ai~~ql~~-~~~~~~~~~~~~~~~la~~L~~~~-~-------~~~~~f--~~SG 141 (474)
T PLN02624 74 GKKYLDFLSAYSAVNQGH-CHPKIIKALTEQAEK-LTLSSRAFYNDKFPEFAEYLTSMF-G-------YDMVLP--MNTG 141 (474)
T ss_pred CCEEEEcccchhcccCCC-CCHHHHHHHHHHHHh-cCCcccccCCHHHHHHHHHHHhhc-C-------CCeEEE--eCCh
Confidence 456788876642111121 134444444444442 111111122233455677777653 1 256777 8999
Q ss_pred hhHHHHHHHHHHhh---c----CCC-EEEEeCCCCCChHHHHHHcCCe-------------eeEEEeecCCCCCcCHHHH
Q 023599 121 SGSLRIGADFLAKH---Y----YQH-TVYLSQPTYGNHPNFFAAAGLA-------------MKTYHYYDPKTNGLDFQGM 179 (280)
Q Consensus 121 ~~al~~~~~~~~~~---~----~Gd-~Vli~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~~l 179 (280)
++|.+.+..+.... . +|+ +|+...-+|.+........... +..++. -|++.+
T Consensus 142 seA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 214 (474)
T PLN02624 142 AEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDAL 214 (474)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHH
Confidence 99999984433321 1 133 5666666776543222211111 112221 268899
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCCCCCCHHH-HHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 180 LQDLGAAPSGAIVLLQASGHNPTGIDPTAQQ-WEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~-l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
++.++....+..+|++..++|++|.+++.++ +++|.++|++||+++|.||+|..+.... ..... ...+...+++.
T Consensus 215 ~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG--~~~a~-~~~~i~pDiv~- 290 (474)
T PLN02624 215 EKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG--KMLAC-DWEEVRPDVVI- 290 (474)
T ss_pred HHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCc--chhhH-HhcCCCCCEEE-
Confidence 9988755455678999999999999988775 9999999999999999999998765432 11111 11122234443
Q ss_pred ecccccccccccccceEEEE
Q 023599 259 QSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~ 278 (280)
+||.++..++++|++++.
T Consensus 291 --lsK~lggG~~pigav~~~ 308 (474)
T PLN02624 291 --LGKALGGGVIPVSAVLAD 308 (474)
T ss_pred --ecccccCCCCcceeeeec
Confidence 689999777999999865
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-11 Score=109.09 Aligned_cols=212 Identities=17% Similarity=0.122 Sum_probs=130.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCC---CC--CHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPI---TG--LPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~G--~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
..+||.+--.+.++.+....++.+.+++.+... .....+|.-. .| ...+++.+++++.. +..++
T Consensus 74 r~vinatg~v~~tNlg~s~l~~~vieAv~~~~~-~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga--------e~alv-- 142 (454)
T TIGR00474 74 RRVINATGVVLHTNLGRAPLAEEAIEAVTDAAR-GYSNLEYDLETGKRGSRYSHVEGLLCELTGA--------EDALV-- 142 (454)
T ss_pred cceeCCCCcEEeccCCCCCCCHHHHHHHHHHHh-cccchhccccccccchHHHHHHHHHHHHhCC--------CcEEE--
Confidence 356675433333444554444444444444432 2212223211 12 36788889888532 33344
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCC---CC---hHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCc
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTY---GN---HPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGA 190 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y---~~---~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~ 190 (280)
+++++.|+.++ + ..+.+||+|++++..+ ++ +...++..|+++++++. +. ..+++.+++++.++++
T Consensus 143 v~sg~aAi~l~--l-~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~-~~---~~~l~dle~aI~~~T~-- 213 (454)
T TIGR00474 143 VNNNAAAVLLA--L-NTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGT-TN---RTHLKDYEDAITENTA-- 213 (454)
T ss_pred ECCHHHHHHHH--H-HHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCC-CC---CCCHHHHHHhcCcCCE--
Confidence 77888898877 5 4478999999998653 22 23456678999998876 22 3578999999987655
Q ss_pred EEEEecCCCCCC--CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc--CC-ChhHHHHhhhcCCeEEEEecccccc
Q 023599 191 IVLLQASGHNPT--GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM--DA-DALPVRMFVADGGECLVAQSYSKTM 265 (280)
Q Consensus 191 ~~v~~~~p~NPT--G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~--~~-~~~~~~~~~~~~~~~i~~~S~SK~~ 265 (280)
+++..+++||+ |.. ...++++|+++|+++|+++++|.+.+-+..-. .. ..+.+....+.+.. +++.|.+|.+
T Consensus 214 -lv~~~h~sN~~~~G~~-~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD-iv~fSg~K~L 290 (454)
T TIGR00474 214 -LLLKVHTSNYRIVGFT-EEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD-LVTFSGDKLL 290 (454)
T ss_pred -EEEEEccCcccccCCC-CCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC-EEEecCcccc
Confidence 77888899996 521 22357788999999999999998744331100 00 01111223333334 7789999998
Q ss_pred cccccccceEEEE
Q 023599 266 GLYGERVGALSVV 278 (280)
Q Consensus 266 ~~~G~RvG~~v~~ 278 (280)
+-| ..|++++.
T Consensus 291 gGp--~~G~i~g~ 301 (454)
T TIGR00474 291 GGP--QAGIIVGK 301 (454)
T ss_pred CCC--eEEEEEEC
Confidence 645 57887764
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=110.41 Aligned_cols=178 Identities=12% Similarity=0.083 Sum_probs=125.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC-hHHHHHHcCC
Q 023599 81 EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN-HPNFFAAAGL 159 (280)
Q Consensus 81 ~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~-~~~~~~~~G~ 159 (280)
.|...+....|.+++++++. . ++++. |++|+.|++++ +...++|||+| +.++|.. +...+...|+
T Consensus 66 ~yag~~s~~~lE~~va~~~G-~-------~~av~--v~sGT~Al~ll--~~l~l~pGDeV--psn~~f~Tt~ahIe~~Ga 131 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELYG-F-------KYVVP--THQGRGAENLL--SQIAIKPGDYV--PGNMYFTTTRYHQEKNGA 131 (450)
T ss_pred hhcCCCcHHHHHHHHHHHHC-C-------CeEEE--cCCHHHHHHHH--HHhCCCCcCEE--CCceeHHHHHHHHHhCCe
Confidence 58888889999999999962 2 55666 99999999987 55567899987 6677743 3444677888
Q ss_pred eeeEEEee--------cCCCCCcCHHHHHHHHhcCC-CCcEEEEecCCCCC-CCCCCCHHHHHHHHHHHHhCCceeEEcc
Q 023599 160 AMKTYHYY--------DPKTNGLDFQGMLQDLGAAP-SGAIVLLQASGHNP-TGIDPTAQQWEQIRQLMRLKRLLPFFDC 229 (280)
Q Consensus 160 ~~~~v~~~--------~~~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~NP-TG~~~~~~~l~~i~~~~~~~~~~ii~De 229 (280)
.++.++.. ++.++.+|++.+++++.++. .+..++++.+++|- .|.+++.++++++.++|++||+.|++|.
T Consensus 132 v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~Da 211 (450)
T TIGR02618 132 TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDA 211 (450)
T ss_pred EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 66666441 13457889999999998642 22336667778885 5899999999999999999999999999
Q ss_pred cCCC----ccc--CcCCChhHH----HHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 230 AYQG----FVM--NMDADALPV----RMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 230 ~y~~----~~~--~~~~~~~~~----~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+... |+- ++.....++ +.+... ... ++.|..|+++.+ +|=+++
T Consensus 212 AR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~-aD~-~~~S~~Kd~~~~---~GG~l~ 264 (450)
T TIGR02618 212 TRCVENAYFIKEREQGYEDKSIAEILKEMMSY-ADG-CTMSGKKDCLVN---IGGFLC 264 (450)
T ss_pred cchhhChhhhhcccccccCCCHHHHHHHHhcc-CcE-EEEeeccCCCCC---CceEEE
Confidence 8754 210 000011122 222222 233 788999988654 566665
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-11 Score=106.98 Aligned_cols=214 Identities=12% Similarity=0.088 Sum_probs=125.6
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|......|+ ..+..+++..+.+.. ...........-..+|.+.+++++ + .+.+++ +++
T Consensus 35 ~g~~~lD~~s~~~~~~~Gh-~~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~-~-------~~~~~~--~~S 102 (401)
T TIGR01885 35 EGKRYLDFLSAYSAVNQGH-CHPKIVKALTEQAQK-LTLSSRAFYNDVFGEFAEYVTKLF-G-------YDKVLP--MNT 102 (401)
T ss_pred CCCEEEEcccCHhhccCCC-CCHHHHHHHHHHHHh-ccccccccCCHHHHHHHHHHHhhc-C-------CCEEEE--eCc
Confidence 4567889987642111111 123333333333331 111111111222355666666663 1 156676 999
Q ss_pred chhHHHHHHHHHHhh-------cCC-CEEEEeCCCCCCh-HHHHHHcCC------------eeeEEEeecCCCCCcCHHH
Q 023599 120 GSGSLRIGADFLAKH-------YYQ-HTVYLSQPTYGNH-PNFFAAAGL------------AMKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 120 ~~~al~~~~~~~~~~-------~~G-d~Vli~~P~y~~~-~~~~~~~G~------------~~~~v~~~~~~~~~~d~~~ 178 (280)
|++|++.+..+.... ..| ++|+.-.-+|.+. ...+...|- .+..++. .|++.
T Consensus 103 Gs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 175 (401)
T TIGR01885 103 GAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEA 175 (401)
T ss_pred cHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHH
Confidence 999999994332211 133 5677777777653 333332221 1222222 27899
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCCCCCHH-HHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGIDPTAQ-QWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~-~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
+++.+++...+..++++...++++|...+.+ .+++|.++|++|++++|+||+|..+.... ..... ...+..++++
T Consensus 176 le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G--~~~~~-~~~~~~~di~- 251 (401)
T TIGR01885 176 LEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG--KLLCV-DHENVKPDIV- 251 (401)
T ss_pred HHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc--hhhHH-hhcCCCCCEE-
Confidence 9998865444456777888999999988644 69999999999999999999997765432 11111 1222234555
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+||.++..|+|+||++..
T Consensus 252 --~~gK~l~~g~~~ig~v~~~ 270 (401)
T TIGR01885 252 --LLGKALSGGVYPVSAVLAD 270 (401)
T ss_pred --EeeccccCCCCCcEEEEEc
Confidence 4679998666999998875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-11 Score=109.40 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=94.7
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-CC-------------eeeEEEeecCC--CCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-GL-------------AMKTYHYYDPK--TNG 173 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G~-------------~~~~v~~~~~~--~~~ 173 (280)
+.+.+ +++|++|.+.+..+........+|+...-+|.+........ |- .+..+|..+.. ..+
T Consensus 116 ~~v~f--~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (451)
T PRK06918 116 KKVLF--LNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEG 193 (451)
T ss_pred CEEEE--cCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCcccccccc
Confidence 46777 99999999999554433323357888888887764333221 11 12222221000 011
Q ss_pred cC--------HHHHHHHHhc--CCCCcEEEEecCCCCCC-CCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 174 LD--------FQGMLQDLGA--APSGAIVLLQASGHNPT-GIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 174 ~d--------~~~l~~~~~~--~~~~~~~v~~~~p~NPT-G~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
.. .+.+++.+.. ...+..++++ .|-+.. |.+++ .+.+++|.++|++||+++|+||+|..|.... .
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~-EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g--~ 270 (451)
T PRK06918 194 LTEEQYDDFMIEEFKNFFISEVAPETIAAVVM-EPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTG--K 270 (451)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCCCceEEEEE-CcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccC--c
Confidence 11 1234433321 1223334444 455555 55454 5559999999999999999999999997642 2
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+...+ +.... +.||||.++ +|+|+||+++.
T Consensus 271 ~~a~~~~-~v~pD---i~t~sK~l~-~G~pig~v~~~ 302 (451)
T PRK06918 271 YFAIEHF-DVVPD---LITVSKSLG-AGVPISGVIGR 302 (451)
T ss_pred eehhHhc-CCCCC---EEeeehhhc-CCCccEEEEEc
Confidence 2233333 21223 558999999 99999999975
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-10 Score=105.83 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=102.7
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-cCCe-------------eeEEEeecCCCC---
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-AGLA-------------MKTYHYYDPKTN--- 172 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~G~~-------------~~~v~~~~~~~~--- 172 (280)
+.+.+ +++|++|.+.+.++........+|+...-+|.+....... .|.. +..++. .....
T Consensus 102 ~~~~f--~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~ 178 (421)
T PRK06777 102 AKTAF--FTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALY-PNELHGVS 178 (421)
T ss_pred ceEEE--eCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCC-CccccCcC
Confidence 56776 8899999999955443332335788888888776433332 1210 111222 01001
Q ss_pred -CcCHHHHHHHHhc--CCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh
Q 023599 173 -GLDFQGMLQDLGA--APSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF 248 (280)
Q Consensus 173 -~~d~~~l~~~~~~--~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 248 (280)
..+++.+++.+.+ .+.+..++++....+..|. +.+.+.+++|.++|++||+++|.||+|..|.... ...+...+
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g--~~~~~~~~ 256 (421)
T PRK06777 179 VEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG--KLFAMEYY 256 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCC--chhhhhhc
Confidence 1135667777753 2344556666666777885 5789999999999999999999999999886542 12222222
Q ss_pred hhcCCeEEEEecccccccccccccceEEEE
Q 023599 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+...+++ ++||.++ +|+|+||+++.
T Consensus 257 -~~~pDiv---~~sK~l~-~G~pigav~~~ 281 (421)
T PRK06777 257 -DVKPDLI---TMAKSLG-GGMPISAVVGR 281 (421)
T ss_pred -CCCCCEE---eeehhhc-CCCceEEEEEc
Confidence 2223443 7999999 99999999875
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=108.98 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=104.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH----HHHHHcCCe
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP----NFFAAAGLA 160 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~----~~~~~~G~~ 160 (280)
.+....|.+.++++... +..++ +++|+.|+.++ +++++.+||+|+++.+.|.... ..+...|++
T Consensus 63 ~P~~~~lE~~la~leg~--------~~av~--~sSG~aAi~~a--l~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~ 130 (384)
T PRK06434 63 NPTVQAFEEKYAVLENA--------EHALS--FSSGMGAITSA--ILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIH 130 (384)
T ss_pred ChhHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcE
Confidence 33456788888888522 33444 89999999999 8888999999999988776654 445678999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
+++++..+.+++. +.+ .+..+|++.+|+|||+.+ .++++|+++|++++ +++|.++..-...
T Consensus 131 v~fvd~~~~~~~~---------l~~--~~tklv~~e~~snpt~~v---~Di~~I~~la~~~~--lvVD~t~~s~~~~--- 191 (384)
T PRK06434 131 VDYIDTDRLNSLD---------FDP--SNYDLIYAESITNPTLKV---PDIKNVSSFCHEND--VIVDATFASPYNQ--- 191 (384)
T ss_pred EEEECCCChhhee---------ecC--CCeeEEEEEcCCCCCcee---ecHHHHHHHHHHcC--eEEECCCCCcccC---
Confidence 9999872212222 122 123488899999999876 46788899999998 4569997433221
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
+.+ +.+.. +++.|.+|.++.+|-=+|=++
T Consensus 192 -----~pl-~~gaD-ivv~S~tK~i~G~~d~~gG~v 220 (384)
T PRK06434 192 -----NPL-DLGAD-VVIHSATKYISGHSDVVMGVA 220 (384)
T ss_pred -----Cch-hcCCC-EEEeecccccCCCCCceEEEE
Confidence 111 22223 568889999976553333333
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=105.36 Aligned_cols=177 Identities=13% Similarity=0.046 Sum_probs=124.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCC---ChHHHHHHc
Q 023599 81 EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYG---NHPNFFAAA 157 (280)
Q Consensus 81 ~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~---~~~~~~~~~ 157 (280)
.|.......+|++.+++.+. . +..++ +++|+.|..++ +...+.|++.|++.++++. .........
T Consensus 24 ~Yg~D~~~~~l~~~i~~l~g-~-------e~a~f--~~sGT~An~~a--l~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~ 91 (290)
T PF01212_consen 24 AYGEDPTTARLEERIAELFG-K-------EAALF--VPSGTMANQLA--LRAHLRPGESVICADTAHIHFDETGAIEELS 91 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHT-S-------SEEEE--ESSHHHHHHHH--HHHHHHTTEEEEEETTEHHHHSSTTHHHHHT
T ss_pred ccCCChhHHHHHHHHHHHcC-C-------CEEEE--eCCCChHHHHH--HHHHHhcCCceeccccceeeeeccchhhHhc
Confidence 58888788899999999863 2 44455 88999999999 7777899999999998652 223333458
Q ss_pred CCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 158 GLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPT-GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 158 G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPT-G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
|++++.++. .++..+|++.+++.+.+. ..++.+|++++|+|-. |++++.+++++|.++|++||+.+..|-+-..
T Consensus 92 G~~~~~l~~--~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~ 169 (290)
T PF01212_consen 92 GAKLIPLPS--DDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLA 169 (290)
T ss_dssp TCEEEEEBE--CTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHH
T ss_pred CcEEEECCC--cccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHH
Confidence 999999987 333579999999999873 2456799999999875 8899999999999999999999999997422
Q ss_pred cccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 234 FVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
-... ....++..+. ..-.++ .-|+||..+++ .|-+++.
T Consensus 170 ~a~~--~~~~~~~e~~-~~~D~v-~~~~tK~~g~~---~Gavl~~ 207 (290)
T PF01212_consen 170 NAAA--ALGVSLAEIA-AGADSV-SFGGTKNGGAP---GGAVLAG 207 (290)
T ss_dssp HHHC--HHHHHHHHHH-TTSSEE-EEETTSTT-SS---SEEEEEE
T ss_pred Hhhh--cccccHHHHh-hhCCEE-EEEEEcccccc---cceEEEe
Confidence 1110 0112233332 233455 56899998765 5666654
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=106.15 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=101.9
Q ss_pred cCCCeEEeecccchhHHHHHHHHHHhhcCC---CEEEEeCCCCCChH----HHHHHcCCee----eEEEeecCCCCCcCH
Q 023599 108 KENRVSTVQCLSGSGSLRIGADFLAKHYYQ---HTVYLSQPTYGNHP----NFFAAAGLAM----KTYHYYDPKTNGLDF 176 (280)
Q Consensus 108 ~~~~i~~v~t~g~~~al~~~~~~~~~~~~G---d~Vli~~P~y~~~~----~~~~~~G~~~----~~v~~~~~~~~~~d~ 176 (280)
.+++|++ |.|++++++++ +.+++.+| +.|++....|+... ..++..|+++ +.++. .+++.+|+
T Consensus 85 ~~~~v~~--~~~~t~~l~~~--~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~--~~~g~~~~ 158 (406)
T TIGR01814 85 KEDEVVV--MNTLTINLHLL--LASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP--REEETLRL 158 (406)
T ss_pred CCCcEEE--eCCchHHHHHH--HHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc--CCCCccCH
Confidence 4688988 99999999998 66655554 36888888887632 2345678877 34544 23456789
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+++.+...+.+.+++++++++|.||..++ +++|.++|+++|+++++|++..--..+. .+.+.+. =+
T Consensus 159 ~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~~i--------d~~~~gv-D~ 226 (406)
T TIGR01814 159 EDILDTIEKNGDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNVPL--------DLHDWGV-DF 226 (406)
T ss_pred HHHHHHHHhcCCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCccc--------ccccCCC-CE
Confidence 9999888643334558999999999999987 6677889999999999999986644321 1111222 25
Q ss_pred EEeccccccc-ccc
Q 023599 257 VAQSYSKTMG-LYG 269 (280)
Q Consensus 257 ~~~S~SK~~~-~~G 269 (280)
++.|..|.++ .||
T Consensus 227 ~~~s~hK~l~g~pG 240 (406)
T TIGR01814 227 ACWCTYKYLNAGPG 240 (406)
T ss_pred EEEcCccccCCCCC
Confidence 6788899863 355
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=105.47 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=118.9
Q ss_pred ecCCCCccchHHHHHHHHHHhc----cCCCCCCCCC--CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHH
Q 023599 53 RTEEGKPLLLNAVRQAEQLLVN----DLSADKEYLP--ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRI 126 (280)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~y~~--~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~ 126 (280)
+|.+..+++.+.+.+++..... ++...+.|+. ...+++.|+.+|+.+... +++|++ |+|||++.++
T Consensus 5 lD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~------~~eIiF--TSG~TEsnNl 76 (386)
T COG1104 5 LDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGAD------PEEIIF--TSGATESNNL 76 (386)
T ss_pred ccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCC------CCeEEE--ecCCcHHHHH
Confidence 3445555555555554444432 1222333421 233567888888886433 488888 9999999999
Q ss_pred HHHHHH--hhc----CCCEEEEeCCCCCChHHHHHHc---CCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 127 GADFLA--KHY----YQHTVYLSQPTYGNHPNFFAAA---GLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 127 ~~~~~~--~~~----~Gd~Vli~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
+ +.+ ... .|.+|+++.-.+....+.++.+ |+++.++|. +. ++.+|+++|++++++++. +|.+..
T Consensus 77 a--I~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V-~~-~G~v~~e~L~~al~~~T~---LVSim~ 149 (386)
T COG1104 77 A--IKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV-DS-NGLVDLEQLEEALRPDTI---LVSIMH 149 (386)
T ss_pred H--HHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC-CC-CCeEcHHHHHHhcCCCce---EEEEEe
Confidence 8 665 222 4689999988887777777655 999999998 33 678999999999987654 888888
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
.||-||++.+ +++|.++|+++++++.+|.+..-
T Consensus 150 aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~ 182 (386)
T COG1104 150 ANNETGTIQP---IAEIGEICKERGILFHVDAVQAV 182 (386)
T ss_pred cccCeeeccc---HHHHHHHHHHcCCeEEEehhhhc
Confidence 9999999887 55668999999999999998644
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-10 Score=104.23 Aligned_cols=222 Identities=10% Similarity=0.100 Sum_probs=124.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSAD-KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+|+..|.....-|+ -.+..+++..+++.+ -... ..+.+.....+|-+.+++.+-+. ..+.+.+ ++
T Consensus 38 dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~-l~~~~~~~~~~~~~~~la~~l~~~~p~~-----~~~~v~f--~~ 108 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGH-RHPRVIAAVKAQLDR-FTHTCHQVVPYENYVRLAERLNALVPGD-----FAKKTIF--VT 108 (425)
T ss_pred CCCEEEEccccHHhhccCC-CCHHHHHHHHHHHhh-ccCcccCccCCHHHHHHHHHHHHhCCCC-----CCCEEEE--CC
Confidence 4567899887753121232 223333444444431 1100 11222222234444444432110 0156777 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-cCC-------------eeeEEEeecCCCCCcC----HHHHH
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-AGL-------------AMKTYHYYDPKTNGLD----FQGML 180 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~G~-------------~~~~v~~~~~~~~~~d----~~~l~ 180 (280)
+|++|.+.+.++........+|+...-+|.+....... .|. .+..+|.. ....+.+ ++.++
T Consensus 109 SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~ 187 (425)
T PRK07495 109 TGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFP-VELHGVSVEQSLAALD 187 (425)
T ss_pred chHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCC-cccccccHHHHHHHHH
Confidence 99999999954433332336788888888765322211 110 12334431 1111222 44556
Q ss_pred HHHhc---CCCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 181 QDLGA---APSGAIVLLQASGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 181 ~~~~~---~~~~~~~v~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+.. ..+.+.+++-+..+| +| ..++.+.+++|.++|++||+++|+||+|..|..... . ..+ +....+.
T Consensus 188 ~~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~--~---~a~-~~~gv~p 260 (425)
T PRK07495 188 KLFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK--L---FAM-EHHEVAA 260 (425)
T ss_pred HHHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC--c---eee-cccCCCC
Confidence 66642 122345555555666 78 457999999999999999999999999988755321 1 111 1122445
Q ss_pred EEecccccccccccccceEEEEc
Q 023599 257 VAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+.+|||.++ .|+++||+++..
T Consensus 261 Di~tlsK~l~-~G~pigav~~~~ 282 (425)
T PRK07495 261 DLTTMAKGLA-GGFPLAAVTGRA 282 (425)
T ss_pred CEEeehhhhc-CCccceEEEEcH
Confidence 6889999998 899999998753
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.3e-10 Score=98.78 Aligned_cols=203 Identities=11% Similarity=0.000 Sum_probs=137.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhcc-CC---CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND-LS---ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
+..++||...+| -|+..-++.++++.+.+... .+ .-.-++...-..+|.+.+|+|+.. +..++
T Consensus 38 ~~~~~nf~SNdY---LGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~--------e~al~-- 104 (388)
T COG0156 38 GRKVLNFCSNDY---LGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGA--------EAALL-- 104 (388)
T ss_pred CceeEeeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--------CcEEE--
Confidence 467899999988 44444455555555554421 11 011122333356788999999522 45555
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC-C--CcEEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP-S--GAIVL 193 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~--~~~~v 193 (280)
.++|-.|...+ +-+++++||.|+.-.-.+-....-++..+++++.+.- .|++.|++.+++.. . +.++|
T Consensus 105 f~SGy~AN~~~--i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~I 175 (388)
T COG0156 105 FSSGFVANLGL--LSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLI 175 (388)
T ss_pred EcccchhHHHH--HHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEE
Confidence 67777788777 7788889999998888777777777888888887764 47899999997731 1 34577
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh-hhcCCeEEEEecccccccccc
Q 023599 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF-VADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 194 ~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G 269 (280)
+...--.=.|.+.+ +++|++++++|+.++++||+|+--++++. ..-....+ ....+..|.++||||.||..|
T Consensus 176 vtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~-GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G 248 (388)
T COG0156 176 VTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPN-GRGLAEHFGLEPEEVDIIVGTLGKALGSSG 248 (388)
T ss_pred EEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCC-CccHHHHhCCCCccceEEEEEchhhhcccC
Confidence 76666666776655 66779999999999999999998888532 11111122 111345899999999998543
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=101.44 Aligned_cols=161 Identities=16% Similarity=0.247 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEE-eCCCCCChHHHH----------H
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYL-SQPTYGNHPNFF----------A 155 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli-~~P~y~~~~~~~----------~ 155 (280)
|-+.|.+..|+.+... +.++=-+..+||+||.++ ++++++|||+++. ...-|.....+. +
T Consensus 55 GRd~le~iyA~vfgaE-------~ALVRpq~vSGTHAi~~~--Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~ 125 (403)
T PF06838_consen 55 GRDKLERIYADVFGAE-------DALVRPQFVSGTHAIALA--LFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLK 125 (403)
T ss_dssp HHHHHHHHHHHHCT-S-------EEEEETTS-SHHHHHHHH--HHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTG
T ss_pred cHHHHHHHHHHHhCch-------hhhhcccccchHHHHHHH--HHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChH
Confidence 4455555566654322 222223456789999999 9999999999875 556787777775 4
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh--CCceeEEcccCCC
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL--KRLLPFFDCAYQG 233 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~--~~~~ii~De~y~~ 233 (280)
.+|+...++++ .++..+|++.++++++++++ ++++.-+.-.-+-..++.++++++++++++ .+++|++|++|.+
T Consensus 126 e~Gi~Y~~v~L--~~dg~~D~~~i~~~~~~~tk--~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGE 201 (403)
T PF06838_consen 126 EFGIKYREVPL--TEDGTIDWEAIKKALKPNTK--MVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGE 201 (403)
T ss_dssp GGT-EEEE--B---TTSSB-HHHHHHHHHTTEE--EEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTT
T ss_pred HhCceeEEEee--cCCCCcCHHHHHHhhccCce--EEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcce
Confidence 57888999999 34468999999999996543 566666666666667899999999999997 5689999999999
Q ss_pred cccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 234 FVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
|+...+ ..+.+..+ ..+|+-|+.| .|+
T Consensus 202 FvE~~E--------P~~vGADl-~aGSLIKNpG-Ggi 228 (403)
T PF06838_consen 202 FVETQE--------PTEVGADL-MAGSLIKNPG-GGI 228 (403)
T ss_dssp TTSSS---------GGGGT-SE-EEEETTSGGG-TTT
T ss_pred eccccC--------ccccchhh-eeccceeCCC-CCc
Confidence 998521 12333444 4999999997 554
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.1e-11 Score=91.98 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCC--ccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC
Q 023599 81 EYLPITGLPEFNKLSAKLIFGADS--PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN 149 (280)
Q Consensus 81 ~y~~~~G~~~lr~~ia~~l~~~~~--~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~ 149 (280)
.|.+..|.++||+++|+|+.+..+ ..+.+++|++ |+|++++++++ +..++.+||.|+++.|+|+.
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivv--t~Ga~~al~~l--~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVL--SAGATAANEII--MFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEE--cCCHHHHHHHH--HHHHcCCCCEEEEeCCCCCC
Confidence 488899999999999999977655 4567899998 99999999999 88889999999999999973
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-09 Score=98.91 Aligned_cols=151 Identities=15% Similarity=0.201 Sum_probs=108.8
Q ss_pred cccchhHHHHHHHHHH--hhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEE
Q 023599 117 CLSGSGSLRIGADFLA--KHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194 (280)
Q Consensus 117 t~g~~~al~~~~~~~~--~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~ 194 (280)
|+|||+++..+ +.. -..++++|++++-.+......++.+|.+...++. + +++.+|++.|++++.+++.++++|+
T Consensus 90 TsGgTean~~a--~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~-~-~~g~id~~~L~~~i~~~~~~t~lvv 165 (380)
T PRK02769 90 TNGGTEGNLYG--CYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITS-L-PNGEIDYDDLISKIKENKNQPPIIF 165 (380)
T ss_pred ecChHHHHHHH--HHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceecc-C-CCCcCcHHHHHHHHHhCCCCcEEEE
Confidence 99999997766 332 2357889999998998888889999999888988 3 3567999999999987644566899
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCC---ceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKR---LLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGER 271 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~---~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 271 (280)
.+.++|+||.+-+. ++|.++|+++| +++.+|.+++.+.........+ ..+.. +... +..|.-|.++ .-..
T Consensus 166 ~t~gtt~tG~idpi---~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~-~d~~~-~vDs-is~s~HK~~~-~P~g 238 (380)
T PRK02769 166 ANIGTTMTGAIDNI---KEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPP-FSFAD-GIDS-IAISGHKFIG-SPMP 238 (380)
T ss_pred EEeCCCCCcccCCH---HHHHHHHHHhCCCceEEEEEecccceeecccCcccc-CCccC-CCCE-EEECCcccCC-CCCC
Confidence 99999999998875 55678889998 7999999998865421111100 11111 2233 3567778776 3455
Q ss_pred cceEEEE
Q 023599 272 VGALSVV 278 (280)
Q Consensus 272 vG~~v~~ 278 (280)
+|.+.+.
T Consensus 239 ~G~l~~r 245 (380)
T PRK02769 239 CGIVLAK 245 (380)
T ss_pred cEEEEEe
Confidence 7766554
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-10 Score=103.30 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=101.5
Q ss_pred CHHHHH----HHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh-HHHHHH--cCCe
Q 023599 88 LPEFNK----LSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH-PNFFAA--AGLA 160 (280)
Q Consensus 88 ~~~lr~----~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~-~~~~~~--~G~~ 160 (280)
...|.+ .+++++.. +..++ .+++|+.|+.++ +.+++.+||+|++...+|... ..-++. .+..
T Consensus 72 ~~~lE~~~~~~la~l~g~--------~~alv-~~~SG~~A~~~~--l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~ 140 (416)
T PRK13034 72 VDEVEALAIERAKQLFGC--------DYANV-QPHSGSQANGAV--YLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKW 140 (416)
T ss_pred HHHHHHHHHHHHHHHhCC--------CceEE-ecCCcHHHHHHH--HHHhcCCCCEEEEcCccceeeeecCCcceeccce
Confidence 456666 77777532 33322 268899999999 888899999999999888652 111110 1111
Q ss_pred e--eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 161 M--KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 161 ~--~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
. ..++. +..++.+|++.+++.+... ++++|++..+. +|... ++.+|.++|+++|+++|+|+++.-.....
T Consensus 141 ~~~~~~~~-~~~~~~~d~~~le~~l~~~--~~klVi~~~~~--~g~~~---dl~~l~~la~~~g~~livD~Aha~G~~~~ 212 (416)
T PRK13034 141 YNAVQYGV-DRLTGLIDYDEVEELAKEH--KPKLIIAGFSA--YPREL---DFARFREIADEVGALLMVDMAHIAGLVAA 212 (416)
T ss_pred eeeEEccc-ccccCCcCHHHHHHHHhhc--CCeEEEECCCc--ccccc---CHHHHHHHHHHcCCEEEEeCcccccCccc
Confidence 1 23443 3445678999999988543 22366664444 34333 57777888999999999999976654421
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
.... ..+ ..--++++|++|.++.+. -|+++.
T Consensus 213 g~~~---~~~---~~~Di~~~s~~K~l~g~~--GG~v~~ 243 (416)
T PRK13034 213 GEHP---NPF---PHAHVVTTTTHKTLRGPR--GGMILT 243 (416)
T ss_pred CCCC---CCC---CCceEEEEeCcccCCCCC--CeEEEE
Confidence 1110 111 123477999999995332 355543
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-10 Score=100.72 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=103.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC-hHHHHHHcC
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN-HPNFFAAAG 158 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~-~~~~~~~~G 158 (280)
-.|...+....|.+++++++.. +.++. +++|+.|++++ +...+++||+| +..++.. ....+...|
T Consensus 72 d~Yagd~s~~~LE~~vAe~lG~--------e~aV~--v~sGTaAl~ll--~~l~v~pGd~V--p~n~~f~Tt~ahI~~~G 137 (460)
T PRK13237 72 EAYAGSRNFYHLEETVQEYYGF--------KHVVP--THQGRGAENLL--SRIAIKPGQYV--PGNMYFTTTRYHQELNG 137 (460)
T ss_pred hhhcCCCcHHHHHHHHHHHHCC--------CeEEE--eCCHHHHHHHH--HHhCCCCcCEE--CCccchHhhHHHHHhCC
Confidence 4588888899999999999632 44555 99999999987 55557899975 4333332 233356678
Q ss_pred CeeeEEEe--------ecCCCCCcCHHHHHHHHhcCC-CCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHhCCceeEEc
Q 023599 159 LAMKTYHY--------YDPKTNGLDFQGMLQDLGAAP-SGAIVLLQASGHNPT-GIDPTAQQWEQIRQLMRLKRLLPFFD 228 (280)
Q Consensus 159 ~~~~~v~~--------~~~~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~NPT-G~~~~~~~l~~i~~~~~~~~~~ii~D 228 (280)
+..+.+.. .++.++.+|++.+++++.+++ .+..++++.+++|-. |+.+|.++++++.++|++||+.||+|
T Consensus 138 a~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D 217 (460)
T PRK13237 138 GIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD 217 (460)
T ss_pred cEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence 75544431 124568899999999998652 233356666688998 79999999999999999999999999
Q ss_pred ccCC
Q 023599 229 CAYQ 232 (280)
Q Consensus 229 e~y~ 232 (280)
.+..
T Consensus 218 aAra 221 (460)
T PRK13237 218 ATRC 221 (460)
T ss_pred Ccch
Confidence 9874
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=100.12 Aligned_cols=222 Identities=11% Similarity=0.067 Sum_probs=121.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCC-CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADK-EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...||+..|.....-|+ -.+..++++.+++.+ ..... .........+|.+.++++.-. ..+.+.+ ++
T Consensus 41 dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~q~~~-~~~~~~~~~~~~~~~~la~~L~~~~~~------~~~~v~f--~~ 110 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGH-RHPKVVQAIKEQADK-LMHGPSGVIYYESILKLAEELAEITPG------GLDCFFF--SN 110 (433)
T ss_pred CCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHh-ccCccccccCCHHHHHHHHHHHHhCCC------CCCEEEE--eC
Confidence 4567889887742122221 223344444444431 11010 111122234555555554311 1256666 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcC--------C-----eeeEEEeecCCC--CC--------c
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAG--------L-----AMKTYHYYDPKT--NG--------L 174 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G--------~-----~~~~v~~~~~~~--~~--------~ 174 (280)
+|++|.+.+.++........+|+..+-+|.+...... ..+ . .+..+|..+... .+ -
T Consensus 111 SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (433)
T PRK08117 111 SGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLE 190 (433)
T ss_pred cHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHH
Confidence 9999999995443322223678888888866433221 111 0 112233211000 00 1
Q ss_pred CHHHHHHHHhc--CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc
Q 023599 175 DFQGMLQDLGA--APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD 251 (280)
Q Consensus 175 d~~~l~~~~~~--~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 251 (280)
+++.+++.+.+ ...+..+|++..-..-.|.+ .+.+.+++|.++|++||+++|+||+|..|..... ......+ +.
T Consensus 191 ~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~--~~~~~~~-gv 267 (433)
T PRK08117 191 CLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE--WFAAQTF-GV 267 (433)
T ss_pred HHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc--chhHhhc-CC
Confidence 55667777653 22334566655544445655 4788899999999999999999999998755321 1111111 11
Q ss_pred CCeEEEEecccccccccccccceEEEE
Q 023599 252 GGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 252 ~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..-+.+|||.++ .|+++|+++..
T Consensus 268 ---~pDi~t~sK~lg-~G~pigav~~~ 290 (433)
T PRK08117 268 ---VPDIMTIAKGIA-SGLPLSAVVAS 290 (433)
T ss_pred ---CCCEeehhhhcc-CCCcceeEEEc
Confidence 122579999999 89999988764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-10 Score=108.73 Aligned_cols=165 Identities=13% Similarity=0.122 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccch----hHHHHHHHHHHhhcC-CC----EEEEeCCCCCChHHHHHHcCC
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS----GSLRIGADFLAKHYY-QH----TVYLSQPTYGNHPNFFAAAGL 159 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~----~al~~~~~~~~~~~~-Gd----~Vli~~P~y~~~~~~~~~~G~ 159 (280)
.++|+.+++++ + .++|.+ +++++ .++.++ +.++.++ || +|+++...++.....+...|+
T Consensus 571 ~~~r~~la~i~-g-------~~~v~f--~pnaga~ge~a~~~v--i~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~ 638 (993)
T PLN02414 571 EDLGDLLCEIT-G-------FDSFSL--QPNAGAAGEYAGLMV--IRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGM 638 (993)
T ss_pred HHHHHHHHHHh-C-------CCeEEE--cCCCcHHHHHHHHHH--HHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCC
Confidence 45777777774 2 277777 88877 788888 6777765 88 899999999888888888999
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.+++ + +++.+|+++|++++.+++++.++|++++|+|-+|... ++++|+++|+++|+++++|.++.--....
T Consensus 639 ~vv~v~~-d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~---~I~eI~~iah~~Galv~vDgAq~~a~~~l- 712 (993)
T PLN02414 639 KIVVVGT-D-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEE---GIDEICDIIHDNGGQVYMDGANMNAQVGL- 712 (993)
T ss_pred EEEEecc-C-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccc---hHHHHHHHHHHcCCEEEEEecCHHhccCc-
Confidence 9999998 4 4568999999999987654567899999999998754 47888999999999999999973322110
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccc----cccccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGL----YGERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~RvG~~v~~ 278 (280)
....+.+..+ +.+|.-|+|+. .|=.+|++.+.
T Consensus 713 ------~~p~~~GaD~-~~~s~HK~f~~P~G~GGPg~G~l~~~ 748 (993)
T PLN02414 713 ------TSPGFIGADV-CHLNLHKTFCIPHGGGGPGMGPIGVK 748 (993)
T ss_pred ------CCccccCCCE-EEecCCccCCcCcccCCCCeeeEEEc
Confidence 0111223334 46678887652 23446766553
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=95.70 Aligned_cols=137 Identities=12% Similarity=0.012 Sum_probs=103.9
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~ 194 (280)
+.+|+.+++++ +.+++.|||+|++..-+..+ +.++++.+|++++.+.. +++..+|++.+++++.+++. ..+|.
T Consensus 62 ~gsGt~amEAa--v~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~--~wg~~v~p~~v~~~L~~~~~-~~~V~ 136 (383)
T COG0075 62 SGSGTLAMEAA--VASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV--EWGEAVDPEEVEEALDKDPD-IKAVA 136 (383)
T ss_pred cCCcHHHHHHH--HHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC--CCCCCCCHHHHHHHHhcCCC-ccEEE
Confidence 88899999999 88999999999999887744 57888999999999987 56778999999999996643 33666
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc-ccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL-YGE 270 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~ 270 (280)
+.+.-.+||... ++++|+++|++|+.++|+|.+-+--..+ ....+.+-.++ +.+-=|.++. ||+
T Consensus 137 ~vH~ETSTGvln---pl~~I~~~~k~~g~l~iVDaVsS~Gg~~--------~~vd~wgiDv~-itgSQK~l~~PPGl 201 (383)
T COG0075 137 VVHNETSTGVLN---PLKEIAKAAKEHGALLIVDAVSSLGGEP--------LKVDEWGIDVA-ITGSQKALGAPPGL 201 (383)
T ss_pred EEeccCcccccC---cHHHHHHHHHHcCCEEEEEecccCCCcc--------cchhhcCccEE-EecCchhccCCCcc
Confidence 655667888765 5778899999999999999986533322 11222333444 6666788865 553
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=98.42 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCe--EEeecccchhHHHHHHHHHHhh--cCCCEEEEeCCCCCChHHHHHHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRV--STVQCLSGSGSLRIGADFLAKH--YYQHTVYLSQPTYGNHPNFFAAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i--~~v~t~g~~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~ 163 (280)
..++.+.+.+++...-+ .+++++ .+ |+|||+|+..+ +.... .++..|+++.-.+......++.+|..+..
T Consensus 64 a~~~e~~v~~~ia~llg--~~~~~~~G~f--TsGGTEaNl~a--l~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~ 137 (374)
T PLN03032 64 SRQFEVGVLDWFARLWE--LEKDEYWGYI--TTCGTEGNLHG--ILVGREVFPDGILYASRESHYSVFKAARMYRMEAVK 137 (374)
T ss_pred HHHHHHHHHHHHHHHhC--CCCccCCEEE--eCchHHHHHHH--HHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeE
Confidence 34444444444322211 123555 55 99999999888 44322 35568888888888888888889999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCC-----ceeEEcccCCCcccCc
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKR-----LLPFFDCAYQGFVMNM 238 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~-----~~ii~De~y~~~~~~~ 238 (280)
+|. + .++.+|++.|++++.+++.++.+++.+..+|+||.+-+ +++|.++|+++| +|+.+|.+|+.+....
T Consensus 138 V~~-d-~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~ 212 (374)
T PLN03032 138 VPT-L-PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPF 212 (374)
T ss_pred eee-C-CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhc
Confidence 998 3 45689999999999876545668888889999999865 556688888886 5999999997653321
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
....+. ..+. .+... ..-|.-|..+ .-.-+|.+.+.
T Consensus 213 ~~~~~~-~~~~-~~vDS-is~s~HK~~g-~P~g~G~ll~r 248 (374)
T PLN03032 213 VSRAPE-VTFR-KPIGS-VSVSGHKFLG-CPMPCGVALTR 248 (374)
T ss_pred cCCCcc-cCCC-cCCcE-EEECcccccC-CCcCeEEEEEE
Confidence 000000 1110 11122 3556778665 34455655543
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.2e-09 Score=94.03 Aligned_cols=155 Identities=10% Similarity=0.015 Sum_probs=98.0
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-cCC------------eeeEEEeecCCC-CCcCHHHHHHH
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-AGL------------AMKTYHYYDPKT-NGLDFQGMLQD 182 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~G~------------~~~~v~~~~~~~-~~~d~~~l~~~ 182 (280)
+++|++|.+.+.++........+|+...-+|.+....... .|. .+..+|..+... ..-+++.+++.
T Consensus 105 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~ 184 (412)
T TIGR02407 105 GPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKL 184 (412)
T ss_pred CCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHH
Confidence 5899999999955443332336788888888776433321 111 122333210000 00246778888
Q ss_pred HhcCC---CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 183 LGAAP---SGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 183 ~~~~~---~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
+.+.. ++..+|++..-+++.|. ..+.+.+++|.++|++||+++|+||++..|.--. .... ....+..+.++
T Consensus 185 ~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG--~~~a-~~~~~v~PDi~-- 259 (412)
T TIGR02407 185 LEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG--TFFS-FEPAGIEPDIV-- 259 (412)
T ss_pred HHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc--hhHH-hcccCCCCCEE--
Confidence 76432 23456777777888998 6799999999999999999999999998663211 0111 11112223433
Q ss_pred eccccccccc-ccccceEEEE
Q 023599 259 QSYSKTMGLY-GERVGALSVV 278 (280)
Q Consensus 259 ~S~SK~~~~~-G~RvG~~v~~ 278 (280)
++||.++ + |+|+||+++.
T Consensus 260 -~~~K~lg-~~G~pigav~~~ 278 (412)
T TIGR02407 260 -CLSKSIS-GYGLPLALTLIK 278 (412)
T ss_pred -Eechhcc-CCccceeEEEEc
Confidence 5789998 7 9999999875
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-08 Score=93.31 Aligned_cols=223 Identities=13% Similarity=0.060 Sum_probs=120.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCC-CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADK-EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+|+..|.....-|+ -.+..+++..+++.+ ....+ .+.+. +.+..+|+.+............+++ .++
T Consensus 37 dG~~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~-~~~~~~~~~~~----~~~~~lae~L~~~~p~~~~~~~~~f-~~~ 109 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGH-NHPNMKQKILDYLQS-GLPLHTLDLTT----PLKDAFIEALLNIIPKRKMDYKLQF-PGP 109 (442)
T ss_pred CCCEEEEccccHhhhcCCC-CCHHHHHHHHHHHHh-ccCccccccCc----HHHHHHHHHHHHhCCCcCCCccEEE-eCC
Confidence 4567899987753222232 233444444444441 11011 11222 3344444444332110000123332 268
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-C------------CeeeEEEeecCCCCCc--------CH-
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-G------------LAMKTYHYYDPKTNGL--------DF- 176 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G------------~~~~~v~~~~~~~~~~--------d~- 176 (280)
+|++|.+.+.++........+|+...-+|.+........ | ..+..++. ++.... +.
T Consensus 110 sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 187 (442)
T TIGR00709 110 SGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPY--PHEYRCPFGIGGEAGSN 187 (442)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCC--CccccccccCCchhHHH
Confidence 999999999554433323367888888887765443322 1 01223332 111111 11
Q ss_pred ---HHHHHHHhc---C-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh
Q 023599 177 ---QGMLQDLGA---A-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV 249 (280)
Q Consensus 177 ---~~l~~~~~~---~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 249 (280)
+.+++.+.. . .+..++++-+.++|+.....+++-++++.++|++||+++|.||++..|.... .......+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG--~~~a~~~~- 264 (442)
T TIGR00709 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG--TMFAFEHA- 264 (442)
T ss_pred HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC--chhHHHHc-
Confidence 223333321 1 2234455555555665566899999999999999999999999999986532 22222222
Q ss_pred hcCCeEEEEecccccccccccccceEEEE
Q 023599 250 ADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 250 ~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+..+++++ +||.++. |+++|++++.
T Consensus 265 gv~PDiv~---~gK~l~~-G~Pigav~~~ 289 (442)
T TIGR00709 265 GIEPDFVV---MSKAVGG-GLPLAVLLIA 289 (442)
T ss_pred CCCCcEEE---EcccccC-CcccEEEEEc
Confidence 33345555 7999995 9999999875
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-09 Score=96.30 Aligned_cols=224 Identities=10% Similarity=-0.036 Sum_probs=123.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|.....-|+. .+..++++.+++. ......+.. . ..+.+..+++.+...... ..+.+.+ +++
T Consensus 40 dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~--~~~~~~~~~-~-~~~~~~~la~~l~~~~p~--~~~~v~f--~~s 110 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHN-HPYIDQAIREQLD--RLDHVIFAG-F-THEPAERLAQRLVALTPG--GLDHVFF--SDS 110 (423)
T ss_pred CCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHh--hCCCccccc-c-CCHHHHHHHHHHHHhCCC--CCCEEEE--eCC
Confidence 45678999877431222322 2333344444443 111111100 0 112334445544332110 1257777 999
Q ss_pred chhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHHcCC-------------eeeEEEeecCCCCCcCHHHHH
Q 023599 120 GSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAAAGL-------------AMKTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 120 ~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~ 180 (280)
|++|.+.+.++.... . +| .+|+...-+|.+.......... .+..++..+.+....+.+.++
T Consensus 111 GseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~ 190 (423)
T PRK05964 111 GSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALE 190 (423)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHH
Confidence 999999995544322 1 34 5788888888765433222111 122333310100011278888
Q ss_pred HHHhcCCCCcEEEEecC-CCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 181 QDLGAAPSGAIVLLQAS-GHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 181 ~~~~~~~~~~~~v~~~~-p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
+.+.+.+++..+|++.. .+...|... +.+.+++|.++|++||+++|+||++..+.... .... ....+.... +
T Consensus 191 ~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G--~~~a-~~~~~v~pD---i 264 (423)
T PRK05964 191 ALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG--TLFA-CEQAGVSPD---I 264 (423)
T ss_pred HHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc--chhH-HHhcCCCCC---e
Confidence 88865544444555543 467778766 89999999999999999999999998775432 1111 111122223 3
Q ss_pred ecccccccccccccceEEEE
Q 023599 259 QSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~ 278 (280)
-++||.++..++++|+++..
T Consensus 265 ~~~~K~l~gG~~p~~av~~~ 284 (423)
T PRK05964 265 MCLSKGLTGGYLPLAATLCT 284 (423)
T ss_pred eeeehhhhcCcccceEEEEc
Confidence 47789997444899997654
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-09 Score=92.70 Aligned_cols=195 Identities=13% Similarity=0.038 Sum_probs=121.2
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCE
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHT 139 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~ 139 (280)
.+.+.+.+++.+.. ......|+...-...+.+.+++.+ ++ +.+++ +++||++..++ +.+.++||+.
T Consensus 11 g~~~~m~eam~~a~--~~~~~~YG~D~~~~~~e~~~ae~~-g~-------~a~~F--v~sGT~aN~la--l~~~~~~~~~ 76 (342)
T COG2008 11 GPTPEMREALAAAN--AVGDDVYGEDPTTNALEQRIAELF-GK-------EAALF--VPSGTQANQLA--LAAHCQPGES 76 (342)
T ss_pred CCCHHHHHHHHhcc--ccCCCCCCCCHHHHHHHHHHHHHh-CC-------ceEEE--ecCccHHHHHH--HHHhcCCCCe
Confidence 45566665555433 233345666555566666666654 21 55666 99999999999 8888999999
Q ss_pred EEEeCCCCCChH--HHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC----CCCcEEEEecCCCCCCCCCCCHHHHHH
Q 023599 140 VYLSQPTYGNHP--NFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA----PSGAIVLLQASGHNPTGIDPTAQQWEQ 213 (280)
Q Consensus 140 Vli~~P~y~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~----~~~~~~v~~~~p~NPTG~~~~~~~l~~ 213 (280)
|++-.-.+.... .....++ .+..++..+..+..+++++++..+... ...+.+++ .|.+|--|++++++++++
T Consensus 77 vi~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~-e~~~te~GtVy~l~el~~ 154 (342)
T COG2008 77 VICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVL-ENTATEGGTVYPLDELEA 154 (342)
T ss_pred EEEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEE-eeccCCCceecCHHHHHH
Confidence 999876553211 1111122 223333323456789999999988742 23333444 444446699999999999
Q ss_pred HHHHHHhCCceeEEcccCCCc--ccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 214 IRQLMRLKRLLPFFDCAYQGF--VMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 214 i~~~~~~~~~~ii~De~y~~~--~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
|.++|+++|+.+..|-+-..- ... ..+. ..+. .+-.++ .-++||..+.| +|-+++.+
T Consensus 155 i~~~~k~~~l~LHmDGAR~~nA~val-g~~~---~~~~-~~~D~v-~~~~tK~g~~~---~gAiv~gn 213 (342)
T COG2008 155 ISAVCKEHGLPLHMDGARLANALVAL-GVAL---KTIK-SYVDSV-SFCLTKGGGAP---VGAIVFGN 213 (342)
T ss_pred HHHHHHHhCCceeechHHHHHHHHHc-CCCH---HHHH-hhCCEE-EEecccCCcce---eeeEEEcC
Confidence 999999999999999874221 111 1122 2221 223455 45689987655 67776653
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-08 Score=92.00 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=97.0
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc----------CC---eeeEEEeecCCC-CCcCHHHHHHH
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA----------GL---AMKTYHYYDPKT-NGLDFQGMLQD 182 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~----------G~---~~~~v~~~~~~~-~~~d~~~l~~~ 182 (280)
+++|++|.+.+..+........+|+...-+|.+........ +. .+..+|..+... ..-|++.+++.
T Consensus 109 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~ 188 (425)
T PRK09264 109 GPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKL 188 (425)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHH
Confidence 57999999999554433323367888888887754322211 11 233344311000 01267888888
Q ss_pred HhcCC---CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 183 LGAAP---SGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 183 ~~~~~---~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
+.+.. .+..+|++..-..-.|. ..+.+.+++|.++|++||+++|+||++..|.... ...... ..+..+++
T Consensus 189 l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG--~~~~~~-~~~v~PDi--- 262 (425)
T PRK09264 189 LEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG--TFFSFE-RAGITPDI--- 262 (425)
T ss_pred HHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc--HHHHHh-hcCCCCCE---
Confidence 86431 23445555554555665 5689999999999999999999999998764321 111111 11223344
Q ss_pred ecccccccccccccceEEEEc
Q 023599 259 QSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.++||.++..|+++|++++..
T Consensus 263 ~t~~K~l~~~G~pigav~~~~ 283 (425)
T PRK09264 263 VTLSKSISGYGLPMALVLIKP 283 (425)
T ss_pred EEeccccCCCccceEEEEEch
Confidence 466899995599999998864
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=97.61 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=91.1
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh--------cCC-----CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH--------YYQ-----HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~--------~~G-----d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 176 (280)
+++....|+||++|+.++ +.+.. ..| ..|++++-.+......++.+|+++..+|. +++++.+|+
T Consensus 100 ~~~~g~~TsGgTEAn~~a--l~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~-d~~~~~vd~ 176 (431)
T TIGR01788 100 AEAVGTSTIGSSEAIMLG--GLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPM-DPGRYVIDP 176 (431)
T ss_pred CCCeEEEechHHHHHHHH--HHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEec-CCCceeeCH
Confidence 345544489999999988 43321 112 36888888888888888889999999998 454457999
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC------CceeEEcccCCCcc
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK------RLLPFFDCAYQGFV 235 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~------~~~ii~De~y~~~~ 235 (280)
+.|++++.+++. +|+.+..||.||.+.+. ++|+++|+++ ++++.+|.+|+.+.
T Consensus 177 ~~L~~~i~~~t~---lV~~t~g~t~tG~idpi---~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~ 235 (431)
T TIGR01788 177 EQVVEAVDENTI---GVVCILGTTYTGEYEDV---KALNDALDEYNAKTGWDIPIHVDAASGGFI 235 (431)
T ss_pred HHHHHHHhhCCe---EEEEEeCCCCCcccCCH---HHHHHHHHHHHhhhCCCceEEEecccHHHH
Confidence 999999987643 88888899999998875 5557788888 89999999998543
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=98.75 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=113.0
Q ss_pred CCCC-HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeE
Q 023599 85 ITGL-PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKT 163 (280)
Q Consensus 85 ~~G~-~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~ 163 (280)
+.|. .+..+..|+.+ +.+ +-.++ ++|+|.++.++ +++.+.+||+|+++.-++......+...|+++++
T Consensus 64 p~G~I~eAe~~aA~~f-GAd------~t~fl--vnGsT~g~~a~--i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvy 132 (417)
T PF01276_consen 64 PEGIIKEAEELAARAF-GAD------KTFFL--VNGSTSGNQAM--IMALCRPGDKVLVDRNCHKSVYNALILSGAIPVY 132 (417)
T ss_dssp TBTHHHHHHHHHHHHH-TES------EEEEE--SSHHHHHHHHH--HHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEE
T ss_pred CccHHHHHHHHHHHhc-CCC------eEEEE--ecCchHHHHHH--HHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEE
Confidence 3444 45555555554 432 22344 99999999999 8999999999999999998777788889999999
Q ss_pred EEeecCC-C--CCcCH-----HHHHHHHhcCCCCc--EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 164 YHYYDPK-T--NGLDF-----QGMLQDLGAAPSGA--IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 164 v~~~~~~-~--~~~d~-----~~l~~~~~~~~~~~--~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
++-.+++ + .+++. +.+++++.+++..+ .++++++|+ --|.+.+ +++|+++|+++++.|++||+|+.
T Consensus 133 i~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~d---i~~I~~~~h~~~~~llvDEAhGa 208 (417)
T PF01276_consen 133 IPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYD---IKEIAEICHKHGIPLLVDEAHGA 208 (417)
T ss_dssp EEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE----HHHHHHHHCCTECEEEEE-TT-T
T ss_pred ecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEEC---HHHHHHHhcccCCEEEEEccccc
Confidence 8763222 1 34566 99999998875432 246665553 4566664 67779999999999999999965
Q ss_pred c-ccCcCCChhHHHHhhh--cCCeEEEEecccccccccccccceEEE
Q 023599 234 F-VMNMDADALPVRMFVA--DGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
. .|. ..+...+..-.+ ....++++.|+-|++ +++.-+-++-
T Consensus 209 h~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh 252 (417)
T PF01276_consen 209 HFGFH-PLPRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLH 252 (417)
T ss_dssp TGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEE
T ss_pred cccCC-CCccchhhccCccccccceeeeechhhcc--cccccceEEE
Confidence 4 333 111111111111 123789999999997 5777665543
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-08 Score=89.47 Aligned_cols=217 Identities=13% Similarity=0.002 Sum_probs=125.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|.-.+.-|+. .+..+++..+++. +. .+.+ .....+....+++++..... .+.+++ +++
T Consensus 34 dG~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~--~~-~~~~--~~~~~~~~~~la~~l~~~~~----~~~v~f--~~S 101 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAE--KL-INPS--PAFYNEPMAKLAGLLTQHSC----FDKVFF--ANS 101 (395)
T ss_pred CCCEEEECCcChhhccCCCC-CHHHHHHHHHHHH--hc-cccc--ccccCHHHHHHHHHHhhccC----CCEEEE--eCC
Confidence 45678999876431223433 3334444444443 11 1111 11234567778888754321 267777 999
Q ss_pred chhHHHHHHHHHHhh----cCC-CEEEEeCCCCCChHHH-HHHcCCee---eEEEeecCC--CCCcCHHHHHHHHhcCCC
Q 023599 120 GSGSLRIGADFLAKH----YYQ-HTVYLSQPTYGNHPNF-FAAAGLAM---KTYHYYDPK--TNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 120 ~~~al~~~~~~~~~~----~~G-d~Vli~~P~y~~~~~~-~~~~G~~~---~~v~~~~~~--~~~~d~~~l~~~~~~~~~ 188 (280)
|++|.+.+..+.... .+| .+|+..+.+|.+.... +...|... .+.|....- ....|++.+++.+.++
T Consensus 102 GseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 179 (395)
T PRK03715 102 GAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDK-- 179 (395)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCC--
Confidence 999999994443321 134 5788888888765333 22233211 111110000 0014788888888543
Q ss_pred CcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 189 GAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
.++|++...++..|... +.+.+++|.++|++||+++|.||++..|.-.. .... ....+.... +.+|||.++
T Consensus 180 -~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG--~~~a-~~~~gv~PD---i~t~gK~lg- 251 (395)
T PRK03715 180 -TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG--TLFA-YELSGIEPD---IMTLGKGIG- 251 (395)
T ss_pred -ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCc--chhh-HhhcCCCCc---eeeehhhhh-
Confidence 33666665555666654 68889999999999999999999998763321 1111 111122234 357799998
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
.|+-+|.+++.
T Consensus 252 ~G~p~~av~~~ 262 (395)
T PRK03715 252 GGVPLAALLAK 262 (395)
T ss_pred CCcceEEEEEc
Confidence 68888887654
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-09 Score=95.29 Aligned_cols=206 Identities=18% Similarity=0.136 Sum_probs=127.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCC-----CCCC-CCC---CHHHHHHHHHHHhCCCCccccCCCe
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADK-----EYLP-ITG---LPEFNKLSAKLIFGADSPAIKENRV 112 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~y~~-~~G---~~~lr~~ia~~l~~~~~~~~~~~~i 112 (280)
.+.|+|=.++ | ...+.+..+......++. .. +|+. ... ++.+....++.+++... .|+
T Consensus 49 ~~~l~LiasE----N---~~s~~v~~a~~s~l~nky-aeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~-----anv 115 (493)
T PRK13580 49 RSSLKLIASE----N---YSSLAVQLAMGNLLTDKY-AEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEH-----AYV 115 (493)
T ss_pred hcCceEeccc----c---cCCHHHHHHhcccccccC-cCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCc-----ccc
Confidence 4668887666 5 455555555444332221 12 2322 222 23344444444665432 333
Q ss_pred EEeecccchhHHHHHHHHHHhhcC-------------------------------CCEEEEeCCCCCChHHH-----HHH
Q 023599 113 STVQCLSGSGSLRIGADFLAKHYY-------------------------------QHTVYLSQPTYGNHPNF-----FAA 156 (280)
Q Consensus 113 ~~v~t~g~~~al~~~~~~~~~~~~-------------------------------Gd~Vli~~P~y~~~~~~-----~~~ 156 (280)
+..+|+.|...+ +.+++.| ||+|+..++..+++... +..
T Consensus 116 ---qp~Sg~~An~~v--~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~ 190 (493)
T PRK13580 116 ---QPHSGADANLVA--FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISG 190 (493)
T ss_pred ---cCCCcHHHHHHH--HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhh
Confidence 478889999999 8888876 89999998877665322 222
Q ss_pred cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 157 AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 157 ~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
...+.+.+++ +++++.+|++.+++.+.+.++ .++++..+|-.+ .. ++++|.++|+++|+++++|+++.--..
T Consensus 191 ~~~~~~~y~v-d~~~g~iD~d~l~~~~~~~~p---lvii~g~S~~~~-~~---dl~~i~eia~~~gA~L~VD~AH~~Gli 262 (493)
T PRK13580 191 KMFHQRSYGV-DPDTGLLDYDEIAALAREFKP---LILVAGYSAYPR-RV---NFAKLREIADEVGAVLMVDMAHFAGLV 262 (493)
T ss_pred heeeeEeccc-CcccCccCHHHHHHHHhhcCC---EEEEeCccccCC-Cc---CHHHHHHHHHHcCCEEEEECchhhcee
Confidence 2356677777 555678999999999987755 555556666644 44 477778889999999999999977655
Q ss_pred CcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 237 NMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
........ ....+ +.+ ++++|++|++. |-+-|++.+.
T Consensus 263 gg~~~~~~-~~~~~-~~D-~vtgT~hKaL~--GP~GG~I~~~ 299 (493)
T PRK13580 263 AGKVFTGD-EDPVP-HAD-IVTTTTHKTLR--GPRGGLVLAK 299 (493)
T ss_pred ccccchhh-cCCCC-CCc-EEEeCChhhcc--CCCeEEEEec
Confidence 32110000 00111 123 67999999983 4456777664
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.03 E-value=9e-09 Score=94.22 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCC--eEEeecccchhHHHHHHHHHHh--hcCCCEEEEeCCCCCChHHHHHHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENR--VSTVQCLSGSGSLRIGADFLAK--HYYQHTVYLSQPTYGNHPNFFAAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~--i~~v~t~g~~~al~~~~~~~~~--~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~ 162 (280)
+..++.+.+.+|+...-+.+ +++ =.+ |+|||+++..+ +..- ..+...|++++-.+......++.+|++++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p--~~~~~G~v--tsGGTEaNL~A--l~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~ 203 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIE--KNEYWGYI--TNCGTEGNLHG--ILVGREVFPDGILYASRESHYSVFKAARMYRMECV 203 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCC--CCCCeEEE--eCcHHHHHHHH--HHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcce
Confidence 56778888888865443321 222 233 99999999888 4432 22334788888888888899999999999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCc-----eeEEcccCCCccc
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRL-----LPFFDCAYQGFVM 236 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~-----~ii~De~y~~~~~ 236 (280)
.+|. .+++.+|++.|++++.+++.++.+|+.+-++-+||.+ +++++|.++|+++|+ |+-+|.+|+.+..
T Consensus 204 ~Vp~--d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l 277 (470)
T PLN02263 204 KVDT--LVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMM 277 (470)
T ss_pred Eecc--CCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHh
Confidence 9998 3567899999999998776567788888899999975 557777888999886 9999999988754
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-08 Score=89.73 Aligned_cols=221 Identities=13% Similarity=0.048 Sum_probs=117.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...||+..|.-...-|+ -.++.++++.+++. .. ..+....+..+.+..+++.+....... ..+.+.+ +++
T Consensus 54 dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~--~~--~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f--~~s 125 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGN-SAPRVVEAVREQVA--RF--THTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSAL--FNS 125 (443)
T ss_pred CCCEEEEcCcchhhhccCC-CCHHHHHHHHHHHH--hc--cCccccccCCHHHHHHHHHHHHhCCCC-CCCEEEE--eCC
Confidence 3456788877642111222 12333444444443 21 112222223345555555554332110 0145666 888
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-CC-------------eeeEEEeecCCC----CCcC------
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-GL-------------AMKTYHYYDPKT----NGLD------ 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~----~~~d------ 175 (280)
|++|.+.+.++.......++|+....+|.+........ +. .+..++.....+ ...+
T Consensus 126 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (443)
T PRK06058 126 GAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAA 205 (443)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHH
Confidence 89999999554433333478999999998875443321 10 112222100100 0011
Q ss_pred --HHHHHHHHhcCCCCcEEEEecCCCCCCCCC--CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc
Q 023599 176 --FQGMLQDLGAAPSGAIVLLQASGHNPTGID--PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD 251 (280)
Q Consensus 176 --~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~--~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 251 (280)
++.+++.+. +.+..+++ ..|-+..|-+ .+.+-+++|.++|++||+++|.||++..|.... ..+. ....+.
T Consensus 206 ~~~~~l~~~~~--~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG--~~fa-~~~~gv 279 (443)
T PRK06058 206 RAITVIEKQVG--ADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG--AWFA-CEHEGI 279 (443)
T ss_pred HHHHHHHHhhC--CCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCh--hhhH-HHhcCC
Confidence 122222221 22333444 4566666543 358889999999999999999999999885432 1111 122233
Q ss_pred CCeEEEEecccccccccccccceEEEE
Q 023599 252 GGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 252 ~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.++++++ +|.++ .|+++|+++..
T Consensus 280 ~PDiv~~---gK~l~-~G~Pi~av~~~ 302 (443)
T PRK06058 280 VPDLITT---AKGIA-GGLPLSAVTGR 302 (443)
T ss_pred CCCEEEE---ccccc-CCCccEEEEEc
Confidence 3455544 79999 89999999875
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-07 Score=88.04 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=98.5
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+..+.... . +| .+|+...-+|.+........ |. .+..+|..+..
T Consensus 113 ~~v~f--~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~ 190 (460)
T PRK06541 113 NRVFF--TTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFY 190 (460)
T ss_pred CEEEE--cCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccc
Confidence 57777 999999999985443322 1 22 67888888886654322211 11 12223321000
Q ss_pred C---CCcC--------HHHHHHHHhcC-CCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 171 T---NGLD--------FQGMLQDLGAA-PSGAIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 171 ~---~~~d--------~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
. ++-+ ++.+++.+... ++..++|++..-+++.|.+.+ .+-+++|.++|++||+++|.||++..|.--
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~ 270 (460)
T PRK06541 191 RAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRL 270 (460)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC
Confidence 0 1112 36677777542 233455555545899998865 888999999999999999999999777321
Q ss_pred cCCChhHHHHhhhcCCeEEEEeccccccccccc-ccceEEEEc
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYGE-RVGALSVVR 279 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~~ 279 (280)
. ...... ..+..++++ +|||.++ .|+ ++|++++..
T Consensus 271 G--~~~a~~-~~gv~PDiv---t~gK~l~-~G~~pigav~~~~ 306 (460)
T PRK06541 271 G--EMFGCE-RFGYVPDII---TCAKGIT-SGYSPLGAMIASD 306 (460)
T ss_pred c--hhhhhh-hcCCCCCEE---Eeccccc-CCccceeEEEEcH
Confidence 1 111111 112233544 4899998 897 999998753
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-07 Score=86.67 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=97.0
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCC-------------eeeEEEeecCCC--CC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGL-------------AMKTYHYYDPKT--NG 173 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~-------------~~~~v~~~~~~~--~~ 173 (280)
+.+.+ +++|++|.+.+.++........+|+...-+|.+...... ..+. .+..+|..+... +.
T Consensus 104 ~~v~f--~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 181 (445)
T PRK08593 104 KRVTF--GLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYE 181 (445)
T ss_pred CEEEE--CCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCcccccccc
Confidence 46777 999999999995443322223578888888876533222 1111 122333211100 00
Q ss_pred -cC-------HHHHHHHHhcC--CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 174 -LD-------FQGMLQDLGAA--PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 174 -~d-------~~~l~~~~~~~--~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.+ ++.+++.+... ..+..+|++.......|.. .+.+-+++|.++|++||+++|.||++..|.... ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG--~~ 259 (445)
T PRK08593 182 EPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG--KW 259 (445)
T ss_pred CCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc--hH
Confidence 11 24444444321 2345677777777777876 688899999999999999999999998774421 11
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.....+ +..+. +-+++|.++ .|+++|++++.
T Consensus 260 ~a~~~~-gv~pD---i~t~gK~l~-~G~p~gav~~~ 290 (445)
T PRK08593 260 SSISHF-NITPD---LMSFGKSLA-GGMPMSAIVGR 290 (445)
T ss_pred HHHHhc-CCCCC---Eeeeccccc-CCcccEEEEEc
Confidence 111111 22234 347899998 78999998875
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=90.84 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHH-hhc--C---C------CEEEEeCCCCCChHHHH
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLA-KHY--Y---Q------HTVYLSQPTYGNHPNFF 154 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~-~~~--~---G------d~Vli~~P~y~~~~~~~ 154 (280)
+...+.+.+..++...-+.+ +...-..|.|||+++.++..... ... . + .+|+++.-.+..+...+
T Consensus 98 ~a~~~E~~~v~~l~~l~~~~---~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa 174 (460)
T COG0076 98 AAAELEERVVNMLSDLLGAP---EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA 174 (460)
T ss_pred hHHHHHHHHHHHHHHHhCCC---CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHH
Confidence 66777777777754443322 22221229999999997722111 111 1 1 16899988888899999
Q ss_pred HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCc
Q 023599 155 AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGF 234 (280)
Q Consensus 155 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~ 234 (280)
+.+|+....+++ ++.++.+|++++++++.+++... +|+-+-++-+||. .+++++|.++|+++++++.+|.+|+.+
T Consensus 175 ~~lG~~~~~v~~-~~~~~~id~~~l~~~i~~~t~~g-~vV~~aGtT~~G~---iDdi~~ia~ia~~~~i~lHVDAA~GG~ 249 (460)
T COG0076 175 RYLGLGLRRVPT-VPTDYRIDVDALEEAIDENTIGG-VVVGTAGTTDTGS---IDDIEELADIAEEYGIWLHVDAAFGGF 249 (460)
T ss_pred HHhCCCceeEEe-ccCccccCHHHHHHHHHhhccCc-eEEEEecCCCCCc---cCCHHHHHHHHHHcCCcEEEEccccce
Confidence 999999999998 44478999999999999886533 4666678899985 567899999999999999999999998
Q ss_pred ccCcCCChhHHHHhhhc-CCeEEEEecccccccccccccceEEEEc
Q 023599 235 VMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.......... ..+ .. ....| .-|+-|.. ++=.-+||+.+.+
T Consensus 250 ~~pf~~~~~~-~~f-~l~~vdSI-t~d~HK~g-~aP~~~G~il~rd 291 (460)
T COG0076 250 LLPFLEPDGR-WDF-GLEGVDSI-TVDGHKYG-LAPIGCGVVLFRD 291 (460)
T ss_pred eecccCccch-hhc-CCCCceEE-EECccccc-CCCCCceEEEEEC
Confidence 7621111111 011 11 12333 56788866 4678888887754
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=96.84 Aligned_cols=177 Identities=15% Similarity=0.084 Sum_probs=117.7
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCee
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAM 161 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~ 161 (280)
+.|..-+.+..+..|+. ++.+ .-.++ ++|+|.++.++ +++.+.+||+|+++.-++-...+.+...|+++
T Consensus 201 ~~p~G~I~eAq~~aA~~-fgA~------~t~Fl--vNGST~gn~a~--i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~P 269 (755)
T PRK15029 201 LDHTGAFGESEKYAARV-FGAD------RSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLILTGAKP 269 (755)
T ss_pred CCCCcHHHHHHHHHHHH-hCCC------cEEEE--eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeE
Confidence 33443344555555554 4432 22344 99999999988 88999999999999999988888888899999
Q ss_pred eEEEee-cCCC--CCcC-----HHHHHHHHhcCCC-------CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeE
Q 023599 162 KTYHYY-DPKT--NGLD-----FQGMLQDLGAAPS-------GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPF 226 (280)
Q Consensus 162 ~~v~~~-~~~~--~~~d-----~~~l~~~~~~~~~-------~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii 226 (280)
+++.-. +..+ .+++ .+.+++++++++. ++.++++++|+ --|.+.+ +++|+++|+++++.|+
T Consensus 270 vyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~d---i~~I~~~~h~~~~~ll 345 (755)
T PRK15029 270 VYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYN---AKEAQDLLEKTSDRLH 345 (755)
T ss_pred EEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeC---HHHHHHHHHhcCCeEE
Confidence 998531 1111 3344 8899999976642 22367776553 4577665 6677899999999999
Q ss_pred EcccCCCc-ccCcCCCh-hHHHH--hhhcCCeEEEEecccccccccccccceE
Q 023599 227 FDCAYQGF-VMNMDADA-LPVRM--FVADGGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 227 ~De~y~~~-~~~~~~~~-~~~~~--~~~~~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
+||+|+.. .|.+.-+. .++.. ....+..++++.|.-|++ |++.-|-+
T Consensus 346 vDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~ 396 (755)
T PRK15029 346 FDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASY 396 (755)
T ss_pred EECccccccccCccccccccccccccccCCCceEEEEchhhcc--cchhhhhh
Confidence 99999654 44321111 11100 011345679999999997 46665544
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-08 Score=89.25 Aligned_cols=163 Identities=14% Similarity=0.068 Sum_probs=100.6
Q ss_pred HHHHHHHHHhCCCCccccCCCeEE-eecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH----------cCC
Q 023599 91 FNKLSAKLIFGADSPAIKENRVST-VQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA----------AGL 159 (280)
Q Consensus 91 lr~~ia~~l~~~~~~~~~~~~i~~-v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~----------~G~ 159 (280)
.|+.+++++... ++++.+ ++++||+++..++ +.+++.+||+|++....++.+...... .+.
T Consensus 85 ar~~~a~lf~a~------~~~~~~~~~~~sgt~an~~v--~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~ 156 (452)
T PTZ00094 85 CQKRALEAFGLD------PEEWGVNVQPYSGSPANFAV--YTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYF 156 (452)
T ss_pred HHHHHHHHhCCC------cccceeecCCCchHHHHHHH--HHHhcCCCCEEEecccccCCcccccccccccccccceeee
Confidence 344666665332 244433 2247899999998 778888999999987776655433211 112
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
++..++. +. ++.+|++.+++.+.+... + ++++. ++.+|...+. ++|.++|+++|+++++|+++.--....+
T Consensus 157 ~~~~~~~-~~-~g~id~~~L~~~l~~~~~-~-lvi~~--~s~~g~~~di---~~I~~i~~~~ga~l~vDaaq~~G~i~~~ 227 (452)
T PTZ00094 157 ESLPYQV-NE-KGLIDYDKLEELAKAFRP-K-LIIAG--ASAYPRDIDY---KRFREICDSVGAYLMADIAHTSGLVAAG 227 (452)
T ss_pred eeeeccc-CC-CCCcCHHHHHHHHHHhCC-C-EEEEe--CCCCCCccCH---HHHHHHHHHcCCEEEEeccchhccccCC
Confidence 3334444 33 367999999999965322 2 44443 3448877765 4557789999999999999866544211
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
....+ + . +.. +++.|..|+++ |-+-|++.+.
T Consensus 228 ~~~~~---~-~-~~D-~l~~S~hK~l~--GP~Gg~l~~~ 258 (452)
T PTZ00094 228 VLPSP---F-P-YAD-VVTTTTHKSLR--GPRSGLIFYR 258 (452)
T ss_pred CCCCC---C-C-CCc-EEEcCCccCCC--CCCceEEEEe
Confidence 10000 1 1 123 66999999874 3344776653
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=9e-08 Score=88.72 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=100.0
Q ss_pred eecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH---------HHcCCeeeEEE--eecCCCCCcCHHHHHHHH
Q 023599 115 VQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF---------AAAGLAMKTYH--YYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 115 v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~---------~~~G~~~~~v~--~~~~~~~~~d~~~l~~~~ 183 (280)
|+..+|+.|..++ +.+++.|||+|+..+..++++.... ...|..+..++ + +++++.+|.+++++..
T Consensus 218 VQp~SGs~AN~aV--~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~-d~~~g~IDyd~lek~a 294 (586)
T PLN02271 218 VQPYSCTSANFAV--YTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKV-NPQTGYIDYDKLEEKA 294 (586)
T ss_pred eeeccHHHHHHHH--HHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccc-ccccCccCHHHHHHHh
Confidence 3477889999999 8899999999999999998876543 23454444444 5 4566789999999954
Q ss_pred -hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccc
Q 023599 184 -GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYS 262 (280)
Q Consensus 184 -~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 262 (280)
..+++ +|++..-.||. .+ +++++.++|+++|+++++|.++..-...... .+ +..+ +.+ ++.+|..
T Consensus 295 ~~~rPK---LII~g~Saypr--~~---D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~-~~---sP~~-~aD-vvt~TTH 360 (586)
T PLN02271 295 LDFRPK---ILICGGSSYPR--EW---DYARFRQIADKCGAVLMCDMAHISGLVAAKE-CV---NPFD-YCD-IVTSTTH 360 (586)
T ss_pred hhcCCe---EEEECchhccC--cC---CHHHHHHHHHHcCCEEEEECcccccccccCc-CC---CCCc-CCc-EEEeCCc
Confidence 33333 77776667772 33 4667788999999999999998554432111 10 0111 123 6789999
Q ss_pred ccccccccccceEEEE
Q 023599 263 KTMGLYGERVGALSVV 278 (280)
Q Consensus 263 K~~~~~G~RvG~~v~~ 278 (280)
|++. |=|-|.+.+.
T Consensus 361 KtLr--GPrGG~I~~r 374 (586)
T PLN02271 361 KSLR--GPRGGIIFYR 374 (586)
T ss_pred ccCC--CCCceEEEec
Confidence 9983 5566877663
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-07 Score=83.66 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=120.0
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|.-...-|+ -.++.+++..+++.+ ........+.....+|.+.++++. + .+.+.+ +++
T Consensus 22 dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~-~~~~~~~~~~~~~~~la~~l~~~~-~-------~~~v~~--~~S 89 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGH-NHPEWVEEMSEQLEK-LVVAGPMFEHEEKEEMLEELSKWV-N-------YEYVYM--GNS 89 (364)
T ss_pred CCCEEEEcccChhhccCCC-CCHHHHHHHHHHHHh-cCCccCCcCCHHHHHHHHHHHhhc-C-------CCEEEE--eCc
Confidence 4567899977642122232 123344444444441 111111112223345666666653 1 156676 999
Q ss_pred chhHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHHHHH--------cCCe-----eeEEEeecCCCCCcCHHHHHHHHhc
Q 023599 120 GSGSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNFFAA--------AGLA-----MKTYHYYDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~~~~--------~G~~-----~~~v~~~~~~~~~~d~~~l~~~~~~ 185 (280)
|++|++++..+.... .| ++|+...-+|.+....... .+.. +..++. .|.+.+++.+.+
T Consensus 90 GseA~e~Alklar~~-~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~~ 161 (364)
T PRK04013 90 GTEAVEAALKFARLY-TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-------NDVEAAKEAITK 161 (364)
T ss_pred hHHHHHHHHHHHHHH-hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-------CCHHHHHHHhcC
Confidence 999999995544333 45 8999999989775433222 1111 112221 267888888764
Q ss_pred CCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 186 APSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
+ ..++++..-+.-.|. ..+.+-++++.++|++||+++|+||+...+... ...... ..+..++++ .++|.
T Consensus 162 ~---~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG---~~~a~~-~~gv~PDiv---~~gK~ 231 (364)
T PRK04013 162 E---TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTG---KFLAIE-HYKVEPDIV---TMGKG 231 (364)
T ss_pred C---cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCC---chhHHH-hcCCCCCEE---Eeccc
Confidence 3 335665544443444 346677999999999999999999999877322 121212 123334555 44999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
++ .|+-+|.++..
T Consensus 232 lg-gG~P~~a~~~~ 244 (364)
T PRK04013 232 IG-NGVPVSLTLTN 244 (364)
T ss_pred cc-CCceeEEEEec
Confidence 98 58888877654
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.9e-07 Score=82.83 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=94.8
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-CC-------------eeeEEEeecCCCCC--
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-GL-------------AMKTYHYYDPKTNG-- 173 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G~-------------~~~~v~~~~~~~~~-- 173 (280)
+.+.+ +++|++|.+.+.++.......++|+...-+|.+........ |. .+..++. ++.+.
T Consensus 116 ~~v~f--~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 191 (441)
T PRK05769 116 KKVFF--TNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPY--PNPYRNP 191 (441)
T ss_pred CEEEE--CCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCC--Ccccccc
Confidence 56777 99999999999554433323367888888887765333221 11 1222332 11100
Q ss_pred ---c--------CHHHHHHHH-hc--CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 174 ---L--------DFQGMLQDL-GA--APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 174 ---~--------d~~~l~~~~-~~--~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
- +.+.+++.+ ++ .+.+..+|++..-..-.|.. .+.+.+++|.++|++||+++|.||++..|....
T Consensus 192 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G 271 (441)
T PRK05769 192 WGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG 271 (441)
T ss_pred ccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc
Confidence 0 123455523 22 22344555555444445664 457789999999999999999999998764422
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.......+ +..++++ +|||.++ .|+++|++++.+
T Consensus 272 --~~~a~~~~-gv~pDiv---t~~K~l~-~G~p~gav~~~~ 305 (441)
T PRK05769 272 --KMFAIEHF-GVEPDII---TLAKAIA-GGLPLGAVIGRA 305 (441)
T ss_pred --ceehhhcc-CCCCCEE---EEccccc-CCcccEEEEEeh
Confidence 11111111 2223554 4899998 799999988653
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.8e-08 Score=81.36 Aligned_cols=158 Identities=15% Similarity=0.215 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEe-CCCCCChHHH----------HH
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLS-QPTYGNHPNF----------FA 155 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~-~P~y~~~~~~----------~~ 155 (280)
|-..|.+-.|+.+... ..++-.+..+|++|+.++ ++.+++|||+.+.. .--|.....+ ++
T Consensus 66 GRdtLe~vyA~vf~aE-------~a~VRpq~isGTHAI~~a--Lfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~ 136 (416)
T COG4100 66 GRDTLERVYAQVFGAE-------AALVRPQIISGTHAIACA--LFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLK 136 (416)
T ss_pred chhHHHHHHHHHhccc-------cceeeeeeecchhHHHHH--HHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHH
Confidence 4555666666665332 223334567889999999 99999999987655 3445545444 45
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh--CCceeEEcccCCC
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL--KRLLPFFDCAYQG 233 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~--~~~~ii~De~y~~ 233 (280)
.+|+....+|+ ..+..+|.+.+++.+.++++ .+.+.-+...-.--.++.+++++++++.++ .|+++++|++|.+
T Consensus 137 dfgi~Y~~v~L--t~~gkiD~~~v~~~i~~~tk--li~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGE 212 (416)
T COG4100 137 DFGIKYKAVPL--TADGKIDIQAVKTAISDRTK--LIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGE 212 (416)
T ss_pred HhCcceeeccc--ccCCcccHHHHHHhcCccce--EEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchh
Confidence 67788888888 33457999999999998765 344444433333334889999999999997 4699999999999
Q ss_pred cccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 234 FVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
|+...+.- ..+..+ .-+|+-|+-|
T Consensus 213 FvE~~EPt--------~vGaDl-iAGSLIKNpG 236 (416)
T COG4100 213 FVEEKEPT--------HVGADL-IAGSLIKNPG 236 (416)
T ss_pred hhhccCcc--------ccchhh-hccceeeCCC
Confidence 99752211 112233 3678888766
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-07 Score=86.19 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=89.6
Q ss_pred eecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-HHHcC-----Cee--e--EEEeecCCCCCcCHHHHHHHHh
Q 023599 115 VQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-FAAAG-----LAM--K--TYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 115 v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-~~~~G-----~~~--~--~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
++.++|+.|+..+ +.+++.|||+|+..+...+++... ....| ... . .+.. +.+++.+|++.+++++.
T Consensus 104 v~~~SG~~AN~av--~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~-~~~~g~iD~d~Le~~l~ 180 (475)
T PLN03226 104 VQPLSGSPANFAV--YTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRL-DESTGLIDYDKLEKKAM 180 (475)
T ss_pred cCcCchHHHHHHH--HHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeee-cCCCCCcCHHHHHHHHh
Confidence 4568889999999 889999999999865433223221 11111 111 1 3333 44567899999999987
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
+... .+++.. .++ +|...+ +++|.++|+++|+++++|+++.--.........+ + + +.+ ++++|++|+
T Consensus 181 ~~~p--klIv~~-~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p---~-~-~~D-iv~~t~hK~ 247 (475)
T PLN03226 181 LFRP--KLIIAG-ASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASP---F-E-YCD-VVTTTTHKS 247 (475)
T ss_pred hcCC--eEEEEe-cCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC---C-C-CCe-EEEecCccc
Confidence 5422 244432 233 555444 5577899999999999999886544321111001 1 1 123 668999999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
++ |-+-|++.+.
T Consensus 248 L~--GP~Gg~I~~~ 259 (475)
T PLN03226 248 LR--GPRGGMIFFR 259 (475)
T ss_pred cc--CCCceEEEEc
Confidence 83 3344776653
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.5e-08 Score=86.75 Aligned_cols=154 Identities=12% Similarity=-0.014 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeeccc-chhHHHHHHHHHHhhc---CCCEEEEeCCCCCChHHHHHHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLS-GSGSLRIGADFLAKHY---YQHTVYLSQPTYGNHPNFFAAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g-~~~al~~~~~~~~~~~---~Gd~Vli~~P~y~~~~~~~~~~G~~~~~ 163 (280)
..+.|+.+++++... .++++++ |.| +|++++++ +.+++. +||.|++ .|........++..|++++.
T Consensus 46 ~~~~r~~l~~l~~~~-----~~~~vvf--~~gs~T~a~~~~--~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~ 115 (355)
T cd00611 46 VNEAESDLRELLNIP-----DNYKVLF--LQGGATGQFAAV--PLNLLGDKGTADYVVT-GAWSAKAAKEAKRYGGVVVI 115 (355)
T ss_pred HHHHHHHHHHHhCCC-----CCceEEE--EcCCchHHHHHH--HHhcCCCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEE
Confidence 456788888886432 1367777 877 99999999 777766 4455543 22222223367788999999
Q ss_pred EEeecCCCCCc-C-HHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 164 YHYYDPKTNGL-D-FQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 164 v~~~~~~~~~~-d-~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
++. +++. .+ + .+..+..+.++++ +|.+++..|.||..++ ++++.+|+++++|.+..-....-+
T Consensus 116 ~~~-~~~g-~~~~~~~~~~~~~~~~~~---lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs~g~~~id-- 180 (355)
T cd00611 116 VAA-KEEG-KYTKIPDVETWDLAPDAA---YVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSNILSRPID-- 180 (355)
T ss_pred Eec-cccc-CCCCCCCHhhcCCCCCCC---EEEEeCCcccccEEcc--------eecccCCCeEEEEccccccCCCCC--
Confidence 987 3221 12 3 2222233333333 7888899999998632 344569999999998766554321
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+.+. . +.+.|.-|.+|.+| +|.+++
T Consensus 181 ------v~~~--~-~~~ss~~K~lGP~G--~g~l~~ 205 (355)
T cd00611 181 ------VSKF--G-VIYAGAQKNLGPAG--VTVVIV 205 (355)
T ss_pred ------HHHh--C-EEEeecccccCCCc--eEEEEE
Confidence 1111 2 35566799998665 555554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=88.36 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=104.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCcccc-----CCCeEEeecccchhHHHHHHHHHHh----hc-------CCCEEEEe
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIK-----ENRVSTVQCLSGSGSLRIGADFLAK----HY-------YQHTVYLS 143 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~-----~~~i~~v~t~g~~~al~~~~~~~~~----~~-------~Gd~Vli~ 143 (280)
..|...++..++.+.+.+|+...-+.+-. ...=++ ++||++|...+ +.+- .+ +.-.|+++
T Consensus 160 ~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~--~sGgSeAnl~a--l~aAR~~~~~~~g~~~~~~~vvy~S 235 (539)
T PLN02590 160 FTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVI--QGTGCEAVLVV--VLAARDRILKKVGKTLLPQLVVYGS 235 (539)
T ss_pred CCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEE--cCchHHHHHHH--HHHHHHHHHhhhcccCCCCEEEEec
Confidence 34555667778888888886554433210 011233 89999988766 3321 10 11255566
Q ss_pred CCCCCChHHHHHHcCC---eeeEEEeecC-CCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 023599 144 QPTYGNHPNFFAAAGL---AMKTYHYYDP-KTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQ 216 (280)
Q Consensus 144 ~P~y~~~~~~~~~~G~---~~~~v~~~~~-~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~ 216 (280)
+-.+......++.+|+ .++.||. +. +++.+|++.|++++.+. ...+.+|+-+-.+-.||.+ +++++|.+
T Consensus 236 ~~aH~Sv~KAa~ilGlg~~~vr~Vp~-d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai---Dpl~~Ia~ 311 (539)
T PLN02590 236 DQTHSSFRKACLIGGIHEENIRLLKT-DSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV---DPLVPLGN 311 (539)
T ss_pred CCchHHHHHHHHHcCCCcccEEEEeC-CCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc---CCHHHHHH
Confidence 6667777888888888 5888898 44 45789999999999753 2346788887788888865 56788899
Q ss_pred HHHhCCceeEEcccCCCccc
Q 023599 217 LMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 217 ~~~~~~~~ii~De~y~~~~~ 236 (280)
+|++|++|+.+|.+|+.+..
T Consensus 312 i~~~~g~WlHVDaA~GG~al 331 (539)
T PLN02590 312 IAKKYGIWLHVDAAYAGNAC 331 (539)
T ss_pred HHHHhCCeEEEecchhhhhh
Confidence 99999999999999988764
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-07 Score=85.25 Aligned_cols=183 Identities=12% Similarity=0.077 Sum_probs=118.9
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCcccc-----CCCeEEeecccchhHHHHHHHHHHh----hc-C-----CC-EEEEeCC
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIK-----ENRVSTVQCLSGSGSLRIGADFLAK----HY-Y-----QH-TVYLSQP 145 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~-----~~~i~~v~t~g~~~al~~~~~~~~~----~~-~-----Gd-~Vli~~P 145 (280)
|...+...++.+.+.+|+...-+.+-. ...-.+ |+||+++...+ +..- .. . .. .|++++-
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~--tsggs~anl~a--l~~AR~~~~~~~g~~~~~~~vv~~S~~ 189 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVI--QGTASEAVLVV--LLAARDRVLRKVGKNALEKLVVYASDQ 189 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEE--cCccHHHHHHH--HHHHHHHHHHHhcccccCCeEEEEcCC
Confidence 444456778888888886544332210 012234 89999988766 3221 11 1 12 4666766
Q ss_pred CCCChHHHHHHcCCe---eeEEEeecC-CCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH
Q 023599 146 TYGNHPNFFAAAGLA---MKTYHYYDP-KTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLM 218 (280)
Q Consensus 146 ~y~~~~~~~~~~G~~---~~~v~~~~~-~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~ 218 (280)
.+......+..+|+. ++.||. +. +++.+|++.|++++++. ...+.+|+-+-.+-.||.+-+ +++|+++|
T Consensus 190 aH~Sv~Kaa~~lGlg~~~v~~Vp~-d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~ 265 (490)
T PLN02880 190 THSALQKACQIAGIHPENCRLLKT-DSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIA 265 (490)
T ss_pred chHHHHHHHHHcCCCHHHEEEeec-CCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHH
Confidence 777778888888883 788888 43 45789999999999753 334678888888899998766 56668889
Q ss_pred HhCCceeEEcccCCCcccCcCCChhHHHHhhhc--CCeEEEEecccccccccccccceEEEE
Q 023599 219 RLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD--GGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 219 ~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++||+|+.+|.+|+.+..-. +..+...+. ..+. +..++-|.+. .-.-+|.+.+.
T Consensus 266 ~~~~iwlHVDaA~gg~~~~~----~~~~~~l~gie~aDS-it~d~HKwl~-~P~~~g~llvr 321 (490)
T PLN02880 266 KSNGMWFHVDAAYAGSACIC----PEYRHYIDGVEEADS-FNMNAHKWFL-TNFDCSLLWVK 321 (490)
T ss_pred HHcCCEEEEehhhHHHHHhC----HHHHHHhcCchhcCE-EEECchhhcC-CCccEEEEEEe
Confidence 99999999999998875421 011211111 1123 3667788775 56667766654
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=78.02 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=114.7
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
..+||-... .+.|.+.+++++.+.. -+ ..-|+.......|.+.+|+.+ ++ |.-++ .++|+.
T Consensus 22 ~~vDLRSDT------vT~PTdeMr~am~eA~--vg-DdVyGeD~tt~rLE~~vA~l~-GK-------EAgLF--v~SGTm 82 (384)
T KOG1368|consen 22 RSVDLRSDT------VTVPTDEMRRAMAEAS--VG-DDVYGEDPTTNRLEQRVAELF-GK-------EAGLF--VPSGTM 82 (384)
T ss_pred ecccccccc------ccCChHHHHHHHhhcc--cC-cccccCCccHHHHHHHHHHHh-Cc-------cceee--eccccc
Confidence 446665533 3467777877776643 12 223555556788999999985 33 33334 555566
Q ss_pred HHHHHHHHHHhhc-CCCEEEEeCCCCC-ChH--HHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC-----CCCcEEE
Q 023599 123 SLRIGADFLAKHY-YQHTVYLSQPTYG-NHP--NFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-----PSGAIVL 193 (280)
Q Consensus 123 al~~~~~~~~~~~-~Gd~Vli~~P~y~-~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-----~~~~~~v 193 (280)
+..++ +...+. +|.+|++-+-++. .|+ .+....|+.+.++.- +++..+|+++++.++... -....++
T Consensus 83 gNlla--Im~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ledIe~~ir~~~GD~H~p~T~LI 158 (384)
T KOG1368|consen 83 GNLLA--IMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKN--ENDGTMDLEDIEAAIRVPKGDCHMPPTKLI 158 (384)
T ss_pred ccHHH--HHHHhcCCCceEEeccchheeehhccChhhhccceeEeeee--CCCCeeeHHHHHHhhcCCCCCccCCCceEE
Confidence 66666 555555 9999999886652 222 122234556666653 566789999999999732 1234699
Q ss_pred EecCCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccC
Q 023599 194 LQASGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAY 231 (280)
Q Consensus 194 ~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y 231 (280)
++.|-+|-+| .+++.+++.++.+||++|++-+-.|-+-
T Consensus 159 clENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGAR 197 (384)
T KOG1368|consen 159 CLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGAR 197 (384)
T ss_pred EeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhh
Confidence 9999998888 9999999999999999999999999864
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=81.46 Aligned_cols=215 Identities=13% Similarity=0.078 Sum_probs=119.7
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+...||+..|.-...-|+ -.++..+++.+++. ... .+.. ..+....+++.+...-.. .+.+.+ +++|
T Consensus 98 G~~yiD~~~g~g~~~lGh-~~p~v~~av~~ql~--~~~--~~~~---~~~~~~~lAe~l~~~~p~---~~~v~f--~~SG 164 (474)
T PLN02482 98 GNEYIDYVGSWGPAIIGH-ADDEVLAALAETMK--KGT--SFGA---PCLLENVLAEMVIDAVPS---VEMVRF--VNSG 164 (474)
T ss_pred CCEEEEecccccccccCC-CCHHHHHHHHHHHh--hCC--CCCC---CCHHHHHHHHHHHHhCCC---CCEEEE--eCCh
Confidence 456777766642111122 12334444444444 221 1211 113444455554332211 267777 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-Hc--CCe------eeEEEeec-CC----CCCcCHHHHHHHHhcC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AA--GLA------MKTYHYYD-PK----TNGLDFQGMLQDLGAA 186 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~--G~~------~~~v~~~~-~~----~~~~d~~~l~~~~~~~ 186 (280)
++|.+.+.++.......++|+...-+|.++...+. .. |.. ...++... ++ .+ -|++.+++.+.++
T Consensus 165 sEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~ 243 (474)
T PLN02482 165 TEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDLEAVKKLFEAN 243 (474)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CChHHHHHHHHhC
Confidence 99999995544333233678888888877643211 10 000 00000000 00 01 2788999888765
Q ss_pred CCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTM 265 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 265 (280)
.....+|++..-..-.|.+.+ .+-+++|.++|++||+++|.||+...|.... .. .....+...++ .+|+|.+
T Consensus 244 ~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~---~g-a~~~~gv~PDi---~t~gK~l 316 (474)
T PLN02482 244 KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY---GG-AQEYFGITPDL---TTLGKVI 316 (474)
T ss_pred CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc---ch-HhHHhCCCCCE---EEecchh
Confidence 444556666555555676554 6779999999999999999999997763321 11 11222222344 4789999
Q ss_pred cccccccceEEE
Q 023599 266 GLYGERVGALSV 277 (280)
Q Consensus 266 ~~~G~RvG~~v~ 277 (280)
+ .|+-+|.++.
T Consensus 317 g-gG~Pigav~g 327 (474)
T PLN02482 317 G-GGLPVGAYGG 327 (474)
T ss_pred h-CCCceEEEEE
Confidence 8 7888888755
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-06 Score=79.59 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=94.2
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhc--CC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCCCCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHY--YQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPKTNG 173 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~--~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~~ 173 (280)
+.+++ +++|++|.+++.++..... .| .+|+...-+|.+........ |- .+..+|.
T Consensus 135 ~~v~f--~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~------- 205 (442)
T TIGR03372 135 KYSFF--CNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF------- 205 (442)
T ss_pred CEEEE--eCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------
Confidence 45666 9999999999955443321 24 57888888887664333222 11 1122222
Q ss_pred cCHHHHHHHHhc---CCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh
Q 023599 174 LDFQGMLQDLGA---APSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV 249 (280)
Q Consensus 174 ~d~~~l~~~~~~---~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 249 (280)
.|.+.+++.++. ...+..++++..-..--|... +++-++++.++|++||+++|.||+...|.--. ..+.... .
T Consensus 206 ~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG--~~~a~e~-~ 282 (442)
T TIGR03372 206 GDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG--KMFACEH-E 282 (442)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc--cchhhhh-c
Confidence 256777776643 223445666554444456544 57778999999999999999999997663321 1111111 1
Q ss_pred hcCCeEEEEecccccccccc-cccceEEEE
Q 023599 250 ADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 250 ~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
+..++++ +++|.+| .| +-+|.+++.
T Consensus 283 gv~PDiv---t~gK~lg-~G~~Pigavv~~ 308 (442)
T TIGR03372 283 GVQPDIL---CLAKALG-GGVMPIGATIAT 308 (442)
T ss_pred CCCCCee---eehhhhc-CCcccceEEEec
Confidence 2233544 4899998 67 578887754
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-07 Score=89.02 Aligned_cols=172 Identities=12% Similarity=0.048 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHhCCCCccccCC-CeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHH---HHHcCCeee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNF---FAAAGLAMK 162 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~---~~~~G~~~~ 162 (280)
+++.|+.+++++.... ++ +|++ |.|+|+|++++ +.++ +.+||+|++..-.|...... ++..|+++.
T Consensus 80 ~e~aR~~ia~~lga~~-----~~~~VvF--tsnaT~alnlv--a~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~ 150 (805)
T PLN02724 80 IESARQQVLEYFNAPP-----SDYACVF--TSGATAALKLV--GETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAI 150 (805)
T ss_pred HHHHHHHHHHHhCCCc-----cceEEEE--eCChHHHHHHH--HHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEE
Confidence 5678899999874321 13 4566 99999999999 4444 57899999987666554433 345699999
Q ss_pred EEEeecC------CCCCcCH--HHHHHHHh----c---CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC-----C
Q 023599 163 TYHYYDP------KTNGLDF--QGMLQDLG----A---APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK-----R 222 (280)
Q Consensus 163 ~v~~~~~------~~~~~d~--~~l~~~~~----~---~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~-----~ 222 (280)
.++...+ +...++. +.+++.+. . ..++..++.++.-+|-||..++.+.++++.+.+.++ +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 9887211 1112332 55665532 0 012235899999999999999988665544443332 3
Q ss_pred ceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 223 LLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 223 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++++|.+..--.... + +.+.+.. .+..|+-|.+|.| -.+|.+++.
T Consensus 231 ~~v~vDaaQ~~g~~pi--D------v~~~~~D-fl~~S~HK~~GgP-~G~G~L~vr 276 (805)
T PLN02724 231 WMVLLDAAKGCGTSPP--D------LSRYPAD-FVVVSFYKIFGYP-TGLGALLVR 276 (805)
T ss_pred eEEEeehhhhcCCCCC--C------hhhcCCC-EEEEecceeccCC-CCceEEEEe
Confidence 6799999875443321 1 1112223 4477888988733 236666554
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.5e-07 Score=78.74 Aligned_cols=210 Identities=12% Similarity=0.131 Sum_probs=122.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
++...|||..|.--+.-|+ -.+..+++..++...--.....|.. ....+|-+.+++.. . ..+.+++ +++
T Consensus 40 ~G~~YlDf~~Giav~~lGH-~hP~iv~al~~Q~~kl~h~sn~~~~-~~~~~la~~L~~~s----~---~~d~vff--~NS 108 (404)
T COG4992 40 QGREYLDFAAGIAVNNLGH-CHPALVEALKEQAEKLWHVSNLFYN-EPQAELAEKLVELS----P---FADRVFF--CNS 108 (404)
T ss_pred CCCEeeeeccceeeeccCC-CCHHHHHHHHHHHHHhhhcccccCC-hHHHHHHHHHHhhC----c---cccEEEE--cCC
Confidence 4578899988863233332 1233334433333310011112322 22334444444442 1 1488888 999
Q ss_pred chhHHHHHHHHHHhhc--CC-CEEEEeCCCCCChHHHHHHcCC-------------eeeEEEeecCCCCCcCHHHHHHHH
Q 023599 120 GSGSLRIGADFLAKHY--YQ-HTVYLSQPTYGNHPNFFAAAGL-------------AMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~--~G-d~Vli~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
|++|++.+..+..... ++ .+|+...-+|.+-.-..-..+. .+.++|. -|++.+++++
T Consensus 109 GaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpf-------nDi~al~~ai 181 (404)
T COG4992 109 GAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPF-------NDIEALEAAI 181 (404)
T ss_pred cHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCC-------CCHHHHHHHh
Confidence 9999999954443333 22 3677776666543211111111 1223333 2899999999
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccc
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYS 262 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 262 (280)
.+++ +.|++..-+=--|+..+ .+-++++.++|++||+++|.||+...+.-.. ..+....+ +-.+++ -++.
T Consensus 182 ~~~t---aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG--k~fA~e~~-gV~PDI---~tla 252 (404)
T COG4992 182 DEDT---AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG--KLFAYEHY-GVEPDI---LTLA 252 (404)
T ss_pred ccCe---EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccc--hHHHHHHh-CCCCCE---EEee
Confidence 8854 37777766767776655 4557899999999999999999998886532 12222211 222344 4678
Q ss_pred ccccccccccceEEE
Q 023599 263 KTMGLYGERVGALSV 277 (280)
Q Consensus 263 K~~~~~G~RvG~~v~ 277 (280)
|.+| .|+-||.+++
T Consensus 253 K~Lg-GG~PigA~la 266 (404)
T COG4992 253 KALG-GGFPIGAMLA 266 (404)
T ss_pred cccc-CCccceeeEE
Confidence 9998 7899998876
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=85.06 Aligned_cols=206 Identities=20% Similarity=0.186 Sum_probs=114.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC---CCC------CHHHHHHHHHHHhCCCCccccCCCe
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP---ITG------LPEFNKLSAKLIFGADSPAIKENRV 112 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~G------~~~lr~~ia~~l~~~~~~~~~~~~i 112 (280)
...|+|-..+ | ...+.+.++......+.. ..+|+. ..| ++.|....++-+++... .++-
T Consensus 20 ~~~l~LiaSE----N---~~Sp~v~~al~S~l~nky-aeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~----~~w~ 87 (399)
T PF00464_consen 20 RSTLNLIASE----N---YMSPAVREALGSDLTNKY-AEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEP----KEWY 87 (399)
T ss_dssp HHSEE-CTT------------HHHHHHHTSGGGGS--TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-ST----TTEE
T ss_pred hcCccccCcc----c---ccCHHHHHHhCCcceeec-cccCCCcccccCcchhhHHHHHHHHHHHHHhCCCc----ccce
Confidence 3568887666 5 455555554444332221 222211 123 34455555555666541 1233
Q ss_pred EEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-----H-----HHcCCeeeEEEeecCCCCCcCHHHHHHH
Q 023599 113 STVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-----F-----AAAGLAMKTYHYYDPKTNGLDFQGMLQD 182 (280)
Q Consensus 113 ~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-----~-----~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 182 (280)
+-|+..+|+.|..++ +.++++|||+|+..++..++|... . .....+.+.+++ +++++.+|.+++++.
T Consensus 88 anvqp~SGs~An~av--~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~-d~~~~~ID~d~l~~~ 164 (399)
T PF00464_consen 88 ANVQPHSGSQANLAV--YMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPV-DPDTGLIDYDELEKL 164 (399)
T ss_dssp EE---SSHHHHHHHH--HHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB--TTTSSB-HHHHHHH
T ss_pred EEeecCCchHHHHHH--HHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeee-ecCCCeECHHHHHHH
Confidence 446789999999999 999999999999999888766421 1 223457888888 667889999999999
Q ss_pred HhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecc
Q 023599 183 LGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSY 261 (280)
Q Consensus 183 ~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 261 (280)
+.+..+ .+|+..--+.| -.-+++++.++|.+.|.+++.|-++- .|+.... .+ +..+. .+ |+.+|+
T Consensus 165 a~~~kP--klIi~G~S~y~-----~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~--~~---~P~~~-AD-vvt~sT 230 (399)
T PF00464_consen 165 AKEHKP--KLIICGASSYP-----RPIDFKRFREIADEVGAYLMADISHIAGLIAGGL--FP---NPFPY-AD-VVTGST 230 (399)
T ss_dssp HHHH----SEEEEE-SSTS-----S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS--S-----GCCT-SS-EEEEES
T ss_pred HhhcCC--CEEEECchhcc-----CccCHHHHHHHHHhcCcEEEecccccccceehhe--ec---Ccccc-ce-EEEeec
Confidence 876522 25554332322 24568899999999999999999983 2332211 11 11122 23 669999
Q ss_pred cccccccccccceEEEE
Q 023599 262 SKTMGLYGERVGALSVV 278 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~ 278 (280)
-|+| +|=|-|.+.+-
T Consensus 231 hKtl--~GPrggiI~~~ 245 (399)
T PF00464_consen 231 HKTL--RGPRGGIILTN 245 (399)
T ss_dssp SGGG---SSS-EEEEES
T ss_pred cccc--cccCceEEEEc
Confidence 9998 58898887764
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=81.01 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=129.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCC----CCCCCCCCCC----CHHHHHHHHHHHhCCCCccccCCCeE
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS----ADKEYLPITG----LPEFNKLSAKLIFGADSPAIKENRVS 113 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~y~~~~G----~~~lr~~ia~~l~~~~~~~~~~~~i~ 113 (280)
.+.|+|=..+ | ...+.+.++.-....++. -..+|+.-.- ++.|....++.|++... .|+
T Consensus 26 ~~~ieLIASE----N---~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~-----anV- 92 (413)
T COG0112 26 REHIELIASE----N---FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEY-----ANV- 92 (413)
T ss_pred hhceeeeecc----c---cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCc-----ccc-
Confidence 3678887666 6 555666555544443221 1123433222 24455555666777653 343
Q ss_pred EeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH---HcC--CeeeEEEeecCCCCCcCHHHHHHHHhcCCC
Q 023599 114 TVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA---AAG--LAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 114 ~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~---~~G--~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~ 188 (280)
+..+|++|...+ +++++.|||+|+-.+-..++|...-. ..| .+.+.+++ +.++..+|.|++++...+..+
T Consensus 93 --QPhSGs~AN~av--~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~v-d~et~~IDyD~~~k~a~e~kP 167 (413)
T COG0112 93 --QPHSGSQANQAV--YLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGV-DPETGLIDYDEVEKLAKEVKP 167 (413)
T ss_pred --CCCCchHHHHHH--HHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEeccc-ccccCccCHHHHHHHHHHhCC
Confidence 478889999999 99999999999999998888754431 122 46777787 677889999999999887622
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccC-CCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAY-QGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
++++.---.. .-.-+++++.++|.+.|.++++|-++ ..|+.....+ .|+ +. .+ ++.+|.-|+|
T Consensus 168 --K~ii~G~SaY-----~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p-~P~----~~-Ad-vVTtTTHKTl-- 231 (413)
T COG0112 168 --KLIIAGGSAY-----SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHP-NPL----PH-AD-VVTTTTHKTL-- 231 (413)
T ss_pred --CEEEECcccc-----ccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCC-CCC----Cc-cc-eEeCCcccCC--
Confidence 2555422111 22346888999999999999999998 3333322111 011 11 12 5689999998
Q ss_pred cccccceEEE
Q 023599 268 YGERVGALSV 277 (280)
Q Consensus 268 ~G~RvG~~v~ 277 (280)
.|=|-|.+.+
T Consensus 232 rGPrGG~Il~ 241 (413)
T COG0112 232 RGPRGGIILT 241 (413)
T ss_pred CCCCceEEEe
Confidence 5778887654
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-06 Score=78.75 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=119.4
Q ss_pred CCCCeeEeecceeecCCCCccchH-HHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLN-AVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...||+..|.-...-| ...+ .+++..+++. ...... .+.....+|.+.+++.. . ..+.+.+ ++
T Consensus 51 dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~--~~~~~~-~~~~~~~~la~~l~~~~----p---~~~~v~f--~~ 116 (428)
T PRK12389 51 DGNKYIDYLAAYGPIITG--HAHPHITKAITEAAE--NGVLYG-TPTELEIEFAKMLKEAI----P---SLEKVRF--VN 116 (428)
T ss_pred CCCEEEEccccccccccC--CCCHHHHHHHHHHHH--hCCccC-CCCHHHHHHHHHHHHhC----C---CCcEEEE--eC
Confidence 456788987774211122 2333 3344444443 221111 22222233444444432 1 1267777 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCCeee--------EEEe-ecCCC---CCcCHHHHHHHHhc
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGLAMK--------TYHY-YDPKT---NGLDFQGMLQDLGA 185 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~~~~--------~v~~-~~~~~---~~~d~~~l~~~~~~ 185 (280)
+|++|.+.+.++........+|+...-+|.+...... ..|.... .++. ..++. ...|++.+++.+.+
T Consensus 117 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 196 (428)
T PRK12389 117 SGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDK 196 (428)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHh
Confidence 9999999995544333233678888888877543322 2221100 0000 00000 01278899988875
Q ss_pred CCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 186 APSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
...+..+|++..-..-.|.+. +.+-+++|.++|+++|+++|.||+...|.... .. .....+..+++ -+++|.
T Consensus 197 ~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~---~~-a~~~~gv~PDi---vt~gK~ 269 (428)
T PRK12389 197 WGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMY---GG-AQDLLGVEPDL---TALGKI 269 (428)
T ss_pred cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCc---ch-hhHHhCCCCCe---eeechh
Confidence 444445666655555556554 67789999999999999999999998773211 00 11112223344 377999
Q ss_pred ccccccccceEEE
Q 023599 265 MGLYGERVGALSV 277 (280)
Q Consensus 265 ~~~~G~RvG~~v~ 277 (280)
++ .|+-+|.+++
T Consensus 270 lg-gG~Pi~av~~ 281 (428)
T PRK12389 270 IG-GGLPIGAYGG 281 (428)
T ss_pred hc-CCCceeEEeE
Confidence 97 6888888765
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=88.39 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=109.2
Q ss_pred CCC-HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEE
Q 023599 86 TGL-PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTY 164 (280)
Q Consensus 86 ~G~-~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v 164 (280)
.|. .+..+..|+. ++.+ .-..+ ++|++.++.++ +.+.+.+||+|++..-++-...+.+...|++++++
T Consensus 194 ~G~i~eAe~~AA~~-fgAd------~tyfv--vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl 262 (714)
T PRK15400 194 SGPHKEAEEYIARV-FNAD------RSYMV--TNGTSTANKIV--GMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYF 262 (714)
T ss_pred ChHHHHHHHHHHHH-hCCC------cEEEE--eCchHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence 344 4555555554 4432 22334 99999999999 88889999999999999877777888899999998
Q ss_pred EeecCCC----CCcC-----HHHHHHHHhcCCC--CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 165 HYYDPKT----NGLD-----FQGMLQDLGAAPS--GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 165 ~~~~~~~----~~~d-----~~~l~~~~~~~~~--~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
.-.- +. .+++ .+.+++++.+++. ++..+++++| +--|.+++.. +|++.|..++ |++||+|..
T Consensus 263 ~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~---~I~~~~~~~~--ilvDEAwga 335 (714)
T PRK15400 263 RPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTD---FIKKTLDVKS--IHFDSAWVP 335 (714)
T ss_pred cccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHH---HHHHHhCCCC--EEEEccchh
Confidence 5421 22 2335 8999999987643 2335666666 5668888765 5566666666 789999976
Q ss_pred c-ccCcCC-ChhHHHHhhhcCCeEEEEeccccccc
Q 023599 234 F-VMNMDA-DALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 234 ~-~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
. .|.+.- +..++..-.+.++.++++.|.-|+++
T Consensus 336 h~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~ 370 (714)
T PRK15400 336 YTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA 370 (714)
T ss_pred hhccCcccCCcChhhcCCCCCCceEEEEchhhccc
Confidence 5 343211 12223211112256799999999974
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.7e-07 Score=82.72 Aligned_cols=184 Identities=9% Similarity=0.084 Sum_probs=114.5
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCc-c--------ccCCCeEEeecccchhHHHHHHHHHH---h-hc-------------
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSP-A--------IKENRVSTVQCLSGSGSLRIGADFLA---K-HY------------- 135 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~-~--------~~~~~i~~v~t~g~~~al~~~~~~~~---~-~~------------- 135 (280)
+...+...++.+.+.+|+...-+. + -.++.-.-+.|+||+.|...+ +.. . +.
T Consensus 121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~A--l~~AR~~~~~~~~~~~~~~~~gl 198 (522)
T TIGR03799 121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITA--LWVARNRLLKADGDFKGVAREGL 198 (522)
T ss_pred eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHH--HHHHHHHhccccccccccccccc
Confidence 444445667777777775332110 0 011111112289999988876 322 1 11
Q ss_pred ---------CCCEEEEeCCCCCChHHHHHHcCC---eeeEEEeecCCCCCcCHHHHHHHHhc---CCCCcEEEEecCCCC
Q 023599 136 ---------YQHTVYLSQPTYGNHPNFFAAAGL---AMKTYHYYDPKTNGLDFQGMLQDLGA---APSGAIVLLQASGHN 200 (280)
Q Consensus 136 ---------~Gd~Vli~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~~~~---~~~~~~~v~~~~p~N 200 (280)
++..|++++-.+......++.+|+ +++.+|. + +++.+|++.|++++.+ +..++++|+.+..++
T Consensus 199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~-d-~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt 276 (522)
T TIGR03799 199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKT-D-ANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT 276 (522)
T ss_pred hhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEe-C-CCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence 134688887777777778888887 7889998 3 4578999999999863 223455666667788
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc--CCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD--GGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.||.+-+ +++|+++|+++|+|+.+|.+|.....-.. . .+.+... ..+. +..|.-|.++ .-.-+|.+.+.
T Consensus 277 ~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~-~---~r~~l~gle~aDS-it~d~HK~l~-~P~g~G~llvr 347 (522)
T TIGR03799 277 ETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSN-T---YRHLLKGIERADS-VTIDAHKQLY-VPMGAGMVLFK 347 (522)
T ss_pred CCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCH-H---HHHHhcCchhCCE-EEEChhhcCC-cCcccEEEEEe
Confidence 9998876 56668889999999999999986543110 1 1122111 1233 3667788654 23556666554
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-06 Score=79.10 Aligned_cols=217 Identities=12% Similarity=0.030 Sum_probs=116.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHH-HHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAV-RQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...||+..|.-...-| ...+.+ ++..+++. ......+ +.....+|-+.+++.+ . ...+.+.+ ++
T Consensus 51 dG~~yiD~~~g~~~~~lG--h~~p~v~~ai~~q~~--~~~~~~~-~~~~~~~la~~L~~~~----~--~~~~~v~f--~~ 117 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHG--HSHPKICDAIQQGAE--RGTSYGL-TSEQEILFAEELFSYL----G--LEDHKIRF--VS 117 (433)
T ss_pred CCCEEEEcccchhccccC--CCCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHhC----C--CCcCEEEE--eC
Confidence 456788997774211112 233333 33333333 2211111 2222234444444442 1 11256777 99
Q ss_pred cchhHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHH-HH--HcCCe----e-eEE--EeecCCC---CCcCHHHHHHHHh
Q 023599 119 SGSGSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNF-FA--AAGLA----M-KTY--HYYDPKT---NGLDFQGMLQDLG 184 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~-~~--~~G~~----~-~~v--~~~~~~~---~~~d~~~l~~~~~ 184 (280)
+|++|.+.+.++.... .| .+|+...-+|.+.... +. ..+.. . ..+ +...... ..-|.+.+++.+.
T Consensus 118 SGsEA~e~AiklAr~~-tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 196 (433)
T PRK00615 118 SGTEATMTAVRLARGI-TGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMN 196 (433)
T ss_pred chHHHHHHHHHHHHHh-hCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHH
Confidence 9999999995543322 34 5788888888775311 10 11100 0 000 0000000 0126888998886
Q ss_pred cCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
+...+..+|++.....-.|... +.+-+++|.++|++||+++|.||++..+... .... ....+....++ .|+|
T Consensus 197 ~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G---~~ga-~~~~gv~PDi~---~~gK 269 (433)
T PRK00615 197 SLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVA---QGGA-AAIYHVKPDIT---VYGK 269 (433)
T ss_pred hcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccccccc---HhHH-HHhcCCCCCeE---EEcc
Confidence 5434444555554444446544 4677899999999999999999999766322 1111 11112233444 4899
Q ss_pred cccccccccceEEEE
Q 023599 264 TMGLYGERVGALSVV 278 (280)
Q Consensus 264 ~~~~~G~RvG~~v~~ 278 (280)
.+| .|+-+|++++.
T Consensus 270 ~lg-gG~p~~av~~~ 283 (433)
T PRK00615 270 ILG-GGLPAAAVVAH 283 (433)
T ss_pred ccc-CCcceeeeeec
Confidence 997 67878887764
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-07 Score=75.24 Aligned_cols=166 Identities=13% Similarity=0.061 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEe
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHY 166 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~ 166 (280)
-+..|.+.+++|+. . +.+-+ |+|+.++-+++ +.+++.+||.|++-.-.+....-.++.+|+++..||-
T Consensus 62 pI~~F~~dlaeFlg-~-------D~~R~--t~GARe~Kfav--Mhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~ 129 (382)
T COG1103 62 PIKDFLEDLAEFLG-M-------DEVRV--TAGAREAKFAV--MHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPN 129 (382)
T ss_pred cHHHHHHHHHHHhC-C-------ceeee--cccchhhHHHH--HHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCC
Confidence 35678888999962 2 55666 99999999999 8999999999999887665555667789999999996
Q ss_pred ecCCCCCcCHHHHHHHHhc---C-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 167 YDPKTNGLDFQGMLQDLGA---A-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~---~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
....++.++++...+.+.+ . .+.+++.+++++. |..=+..+-++++++|+++++.++...+|.--..+-
T Consensus 130 tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~D---g~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpv---- 202 (382)
T COG1103 130 TGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVD---GEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPV---- 202 (382)
T ss_pred CCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccC---CCcCCchhhHHHHHHHHHcCCceEeecceeeccccc----
Confidence 5455688999888887754 2 2345667775554 555567788999999999999999999996544321
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+..+.+.. ..++|=-|+++ +.--+|.+..
T Consensus 203 ----s~ke~g~D-FiVgSGHKsmA-As~PiGvl~~ 231 (382)
T COG1103 203 ----SGKEIGAD-FIVGSGHKSMA-ASAPIGVLAM 231 (382)
T ss_pred ----cccccCCC-EEEecCccchh-ccCCeeEEee
Confidence 11112223 34788888886 5556676543
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-08 Score=85.93 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcC----C--CEEEEeCCCCCChHHHHHHcCCee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYY----Q--HTVYLSQPTYGNHPNFFAAAGLAM 161 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~----G--d~Vli~~P~y~~~~~~~~~~G~~~ 161 (280)
.++|.+.|.+....-+........|++ .+|+++.++++ +.++... + -.|+...|.|+.|......+.-..
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~--GtGsTQL~~Aa--lyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~ 120 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVF--GTGSTQLFNAA--LYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRL 120 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEE--ECHHHHHHHHH--HHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTT
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEE--cCCHHHHHHHH--HHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccC
Confidence 467888888875333333222233444 99999999999 5554322 2 379999999999987765433233
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
..+.- |...|. ........+=++++||||.|.. .+. +++..+..+|.|-+|..=+|.+
T Consensus 121 y~w~G-da~~~~----------~~~~~~~~IElVTSPNNPDG~l-----r~~---V~~g~~~k~I~D~AYYWPhyTp--- 178 (363)
T PF04864_consen 121 YKWAG-DASNFK----------NSDNPSPYIELVTSPNNPDGQL-----REA---VLNGSSGKVIHDLAYYWPHYTP--- 178 (363)
T ss_dssp EEEEE-ECCCGT----------T-S-CCGEEEEEESS-TTT--------------SSTTTEEEEEEE-TT-STTTS----
T ss_pred ccccc-cHHhhc----------cCCCCCCeEEEEeCCCCCcccc-----cch---hcCCCCcceeeeeeeecccccc---
Confidence 33333 222221 1112334577889999999964 122 2345567789999998877642
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+....+ .=|-+.|+||.-|=+|-|+||+++-
T Consensus 179 ---I~~~aD---~DiMLFT~SK~TGHAGSR~GWAlVK 209 (363)
T PF04864_consen 179 ---ITAPAD---HDIMLFTLSKLTGHAGSRFGWALVK 209 (363)
T ss_dssp -----S-B-----SEEEEEHHHHCS-GGG-EEEEEES
T ss_pred ---cCCCCC---CceEEEEEecccCccccccceeeec
Confidence 222222 2355899999999999999999874
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=91.54 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=100.0
Q ss_pred CCeEEeecccchhHHHHHHH-HHHh-hcCCC----EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 110 NRVSTVQCLSGSGSLRIGAD-FLAK-HYYQH----TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~-~~~~-~~~Gd----~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
+++.+ +.+||+++...... +... ..+|+ +|++++-.++.....+...|++++.++. + .++.+|++.|++++
T Consensus 558 d~~sl-~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~-d-~~G~iD~~~L~~~i 634 (954)
T PRK05367 558 DAVSL-QPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVAC-D-ENGNIDLDDLRAKA 634 (954)
T ss_pred CCEEE-CccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECC-C-CCCCcCHHHHHHHH
Confidence 45555 25555555533310 2221 24565 6999999898777888899999999998 3 34689999999999
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
.++..+.++|++++|++- |. -.+++++|+++|+++|+++++|.++..-..... ...+.+.. ++..|.-|
T Consensus 635 ~~~~~~la~V~it~pst~-G~--~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~-------~pg~~GAD-i~~~s~HK 703 (954)
T PRK05367 635 EEHADNLAAIMITYPSTH-GV--FEETIREICEIVHEHGGQVYLDGANMNAQVGLA-------RPGDIGAD-VSHLNLHK 703 (954)
T ss_pred hccCCCeEEEEEEcCCCC-ee--ecCCHHHHHHHHHHcCCEEEEECcChhhccCCC-------ChhhcCCC-EEEecCcc
Confidence 875344567777666654 22 224588899999999999999999853322110 01123334 44677889
Q ss_pred ccccc----ccccceEEEE
Q 023599 264 TMGLY----GERVGALSVV 278 (280)
Q Consensus 264 ~~~~~----G~RvG~~v~~ 278 (280)
+|+.| |=-+|.+.+.
T Consensus 704 ~f~~P~G~GGPg~G~l~vr 722 (954)
T PRK05367 704 TFCIPHGGGGPGVGPIGVK 722 (954)
T ss_pred cCCCCcCCCCCceEEEeec
Confidence 87532 3335565553
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-07 Score=86.11 Aligned_cols=147 Identities=18% Similarity=0.106 Sum_probs=98.3
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-HHHcCCeeeEEEeec-CCC--CCcCHH-----HHHHHHhcCC
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-FAAAGLAMKTYHYYD-PKT--NGLDFQ-----GMLQDLGAAP 187 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-~~~~G~~~~~v~~~~-~~~--~~~d~~-----~l~~~~~~~~ 187 (280)
++|+|.++.++ +.+.+.+||+|++..-++-...+. +...|++++++.-.- +.+ .+++.+ .+++++.+++
T Consensus 196 vNGTS~gn~a~--i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~ 273 (720)
T PRK13578 196 LNGTSASNKVV--TNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVA 273 (720)
T ss_pred eCChhHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcC
Confidence 99999999999 889999999999999988766663 778999999985421 111 334544 4888887662
Q ss_pred -C-----C-cEEEEecCCCCCCCCCCCHHHHHHHHHH-HHhCCceeEEcccCCCc-ccCcC-CChhHH-HHhhhcCCeEE
Q 023599 188 -S-----G-AIVLLQASGHNPTGIDPTAQQWEQIRQL-MRLKRLLPFFDCAYQGF-VMNMD-ADALPV-RMFVADGGECL 256 (280)
Q Consensus 188 -~-----~-~~~v~~~~p~NPTG~~~~~~~l~~i~~~-~~~~~~~ii~De~y~~~-~~~~~-~~~~~~-~~~~~~~~~~i 256 (280)
. + .+++++++| +--|.+++. ++|++. +++++ .|++||+|... .|.+. ++.++. ..+-..+.-++
T Consensus 274 p~~~~~~~p~k~vvit~p-TYdG~~ydi---~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~ 348 (720)
T PRK13578 274 PERADEARPFRLAVIQLG-TYDGTIYNA---RQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIF 348 (720)
T ss_pred ccccccccCceEEEEECC-CCcceeecH---HHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeE
Confidence 2 1 357777655 355888765 555666 56677 99999999655 34321 111111 11111123589
Q ss_pred EEeccccccccccccc
Q 023599 257 VAQSYSKTMGLYGERV 272 (280)
Q Consensus 257 ~~~S~SK~~~~~G~Rv 272 (280)
++.|.-|+++ |+--
T Consensus 349 v~QStHKtL~--alTQ 362 (720)
T PRK13578 349 VTQSVHKQQA--GFSQ 362 (720)
T ss_pred EEEChhhcch--hhhh
Confidence 9999999973 5443
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-07 Score=89.11 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=92.4
Q ss_pred CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 023599 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQL 217 (280)
Q Consensus 138 d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~ 217 (280)
++|+++.-.++.....++..|++++.++. + +++.+|+++|++++.++..+.++|++++|+| +|.+-+ ++++|+++
T Consensus 579 ~~vlip~saHgtnPasa~~~G~~Vv~V~~-d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~i 653 (939)
T TIGR00461 579 NICLIPVSAHGTNPASAAMAGMQVVPVNC-D-QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDI 653 (939)
T ss_pred CEEEEEccccCcCHHHHHHCCCEEEEecc-C-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHH
Confidence 57999998887777778899999999998 3 4568999999999986434556888999999 786543 38889999
Q ss_pred HHhCCceeEEcccCCC-cccCcCCChhHHHHhhhcCCeEEEEeccccccc----ccccccceEEEE
Q 023599 218 MRLKRLLPFFDCAYQG-FVMNMDADALPVRMFVADGGECLVAQSYSKTMG----LYGERVGALSVV 278 (280)
Q Consensus 218 ~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~----~~G~RvG~~v~~ 278 (280)
|+++|.++++|-++.- +..- ....+.+.+ ++.+|.-|+|+ ..|=-+|.+.+.
T Consensus 654 ah~~G~~v~VDgAq~~al~~l--------~~Pg~~GaD-i~~~s~HKtf~~P~G~GGPg~G~i~vr 710 (939)
T TIGR00461 654 VHSFGGQVYLDGANMNAQVGL--------TSPGDLGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVK 710 (939)
T ss_pred HHHcCCEEEEEecChhhCCCC--------CCccccCCC-EEEecCCccCCCCCCCCCCCeEEEEEh
Confidence 9999999999999843 2221 001122233 44677888765 234456777664
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.9e-07 Score=85.22 Aligned_cols=149 Identities=11% Similarity=0.024 Sum_probs=101.8
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee-cCCC--CCcCH-----HHHHHHHhcCCC
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY-DPKT--NGLDF-----QGMLQDLGAAPS 188 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~--~~~d~-----~~l~~~~~~~~~ 188 (280)
++|++.++.++ +.+.+.+||+|++..-++-...+.+...|++++++.-. ++.+ .+++. +.+++++.+++.
T Consensus 217 vNGTS~~n~av--~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~ 294 (713)
T PRK15399 217 TNGTSTSNKIV--GMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQ 294 (713)
T ss_pred eCChHHHHHHH--HHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCC
Confidence 99999999999 88899999999999999877777888899999998531 1111 33455 899999987643
Q ss_pred --CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCcee-EEcccCCCc-ccCcC-CChhHHHHhhhcCCeEEEEecccc
Q 023599 189 --GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLP-FFDCAYQGF-VMNMD-ADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 189 --~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~i-i~De~y~~~-~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
++..+++++| +--|.+++.+++.+ .| ++.+ ++||+|... .|.+. .+..++........-++++.|.-|
T Consensus 295 ~~~p~~vvit~p-TYdGi~yd~~~I~~---~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHK 367 (713)
T PRK15399 295 AQWPVHAVITNS-TYDGLLYNTDWIKQ---TL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHK 367 (713)
T ss_pred cCCceEEEEECC-CCCceeeCHHHHHH---Hh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhc
Confidence 2356777666 56788887766544 44 4545 699999764 33321 112222211012345778999999
Q ss_pred cccccccccceEE
Q 023599 264 TMGLYGERVGALS 276 (280)
Q Consensus 264 ~~~~~G~RvG~~v 276 (280)
++ +|+.-+-++
T Consensus 368 tL--~alTQaS~i 378 (713)
T PRK15399 368 ML--AAFSQASLI 378 (713)
T ss_pred cc--cccchheee
Confidence 97 566655443
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-07 Score=82.78 Aligned_cols=202 Identities=13% Similarity=0.100 Sum_probs=121.0
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcccc-----CCCeEEeecccchhHHHHHHHHHHh-
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIK-----ENRVSTVQCLSGSGSLRIGADFLAK- 133 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~-----~~~i~~v~t~g~~~al~~~~~~~~~- 133 (280)
.+...+........+ .....|...+...++.+.+.+|+...-+.+-. ...=++ |+||++++..+ +.+.
T Consensus 51 ~~~~i~~~~l~~~~n--~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~--t~Ggt~anl~a--l~aAR 124 (373)
T PF00282_consen 51 SPASILADLLASALN--QNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVF--TSGGTEANLYA--LLAAR 124 (373)
T ss_dssp CHHHHHHHHHHHHHT---BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEE--ESSHHHHHHHH--HHHHH
T ss_pred cHHHHHHHHHHhhhc--ccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeE--eccchHHHHHH--HHHHH
Confidence 444555555555442 21333433445667788888886544333211 011223 99999999877 3321
Q ss_pred ---h----cCC-----C-EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecC
Q 023599 134 ---H----YYQ-----H-TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQAS 197 (280)
Q Consensus 134 ---~----~~G-----d-~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~ 197 (280)
. ..| + .|++++-.+......+..+|+.++.||+ ++ ++.+|++.|++++.+. ...+.+|+.+-
T Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~-~~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~ 202 (373)
T PF00282_consen 125 ERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPT-DE-DGRMDIEALEKALEKDIANGKTPFAVVATA 202 (373)
T ss_dssp HHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-B-BT-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEB
T ss_pred HHHhhhhhhcccccccccccccccccccHHHHhcceeeeEEEEecC-Cc-chhhhHHHhhhhhcccccccccceeeeccC
Confidence 1 112 2 5666666777788899999999999999 44 6789999999998653 22355677777
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc--CcCCChhHHHHhhhcCCeEEEEecccccccccccccceE
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM--NMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
.+..||.+ +++++|.++|+++++|+-+|.+|+...+ +..+. -...+. ....| .-++-|.++ .-.-+|++
T Consensus 203 Gtt~~Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~--~~~gi~--~adSi-t~d~HK~l~-~P~~~~~~ 273 (373)
T PF00282_consen 203 GTTNTGAI---DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRH--LLFGIE--RADSI-TIDPHKWLG-VPYGCGVL 273 (373)
T ss_dssp S-TTTSBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGG--GGTTGG--GESEE-EEETTTTTS--SSS-EEE
T ss_pred CCcccccc---cCHHHHhhhccccceeeeecccccccccccccccc--cccccc--ccccc-ccchhhhhc-CCccceeE
Confidence 88888865 6788899999999999999999998332 21111 011111 11333 457788887 55677776
Q ss_pred EEE
Q 023599 276 SVV 278 (280)
Q Consensus 276 v~~ 278 (280)
.+.
T Consensus 274 l~r 276 (373)
T PF00282_consen 274 LVR 276 (373)
T ss_dssp EES
T ss_pred Eee
Confidence 653
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.7e-06 Score=76.61 Aligned_cols=223 Identities=12% Similarity=0.098 Sum_probs=118.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|.....-|+. .+..+++..+++.+-......+.......+|.+.+++..- ...+.+.+ +++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p------~~~~~v~f--~~S 121 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYS-HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISP------IENPKVLF--GLS 121 (457)
T ss_pred CCCEEEECCcCHHhhccCCC-CHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCC------CCcCEEEE--eCc
Confidence 35678898777421112321 2233344444443100111122222222345555554421 11256777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-cCC-------------eeeEEEeecCCC--CC----cCH---
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-AGL-------------AMKTYHYYDPKT--NG----LDF--- 176 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~G~-------------~~~~v~~~~~~~--~~----~d~--- 176 (280)
|++|.+.+..+........+|+...-+|.+....... .|. .+..+|..+... +. .+.
T Consensus 122 GsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 201 (457)
T PRK05639 122 GSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDEL 201 (457)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHH
Confidence 9999999955543333346788888888775432221 111 123333311100 00 022
Q ss_pred -----HHHHHHHhc---CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 177 -----QGMLQDLGA---APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 177 -----~~l~~~~~~---~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
+.+++.+.. .+.+...|++..-+--.|.. .+.+-+++|.++|++||+++|.||+...|.... ..+. ..
T Consensus 202 ~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG--~~~a-~~ 278 (457)
T PRK05639 202 INRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG--KWFA-SE 278 (457)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCc--hHHH-HH
Confidence 234444322 13345566665555555664 468889999999999999999999998763321 1111 11
Q ss_pred hhhcCCeEEEEecccccccccccccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+...++++ |+|.++ .|+-+|.+++.
T Consensus 279 ~~gv~PDiv~---~gK~l~-gG~pi~av~~~ 305 (457)
T PRK05639 279 WFEVKPDLII---FGKGVA-SGMGLSGVIGR 305 (457)
T ss_pred hcCCCCCEEE---echhhc-CCCcceeEEeh
Confidence 1233346665 799997 68888888764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.4e-07 Score=87.28 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=104.4
Q ss_pred CCCCCC---CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh----c---CC-CEEEEeCCCC
Q 023599 79 DKEYLP---ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH----Y---YQ-HTVYLSQPTY 147 (280)
Q Consensus 79 ~~~y~~---~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~----~---~G-d~Vli~~P~y 147 (280)
.+.|.| .+|..++...+.+++....+ .+.+.+ +-.+|..+-.+. ++++- . ++ ++|+++.-.+
T Consensus 529 ~hPyqp~e~sQG~lq~i~elq~~l~eLtG----md~~Sl-~p~sGA~gE~A~--Lmair~yh~~~Ge~~r~~vLIp~saH 601 (954)
T PRK12566 529 LHPFAPREQAEGYRAMIDELEAWLCAITG----FDAICM-QPNSGAQGEYAG--LLAIRRYHRSRGQSQRDICLIPSSAH 601 (954)
T ss_pred CCCCCchhhhcCHHHHHHHHHHHHHHHHC----CCeEee-cCCchHHHHHHH--HHHHHHHHHhcCCCCCCEEEeccccc
Confidence 366887 67765544444444222211 133332 344555555444 33321 1 22 5788888777
Q ss_pred CChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE
Q 023599 148 GNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF 227 (280)
Q Consensus 148 ~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~ 227 (280)
......+...|++++.++. + +++.+|+++|++++.+...+.++|++++|++=. ++ .+++++|+++|+++|+++++
T Consensus 602 gtNpasa~~~GieVv~Vp~-D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~G--v~-e~~V~eI~~iah~~Galv~v 676 (954)
T PRK12566 602 GTNPASAQMAGMRVVIVEC-D-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHG--VY-EEGIREICEVVHQHGGQVYM 676 (954)
T ss_pred ccCHHHHHHCCCEEEEecc-C-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCc--ee-cchHHHHHHHHHHcCCEEEE
Confidence 5555667788999999998 4 356899999999997544455677776666544 33 56799999999999999999
Q ss_pred cccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 228 DCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 228 De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
|-+..--.... ....+.+.. ++.+++-|+|+
T Consensus 677 DgA~~~a~~~l-------~~Pg~~GAD-i~~~s~HKtf~ 707 (954)
T PRK12566 677 DGANLNAQVGL-------ARPADIGAD-VSHMNLHKTFC 707 (954)
T ss_pred EeeChhhccCC-------CChhhcCCC-EEEecCCcccC
Confidence 99874211111 111123333 45788889885
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.8e-07 Score=78.92 Aligned_cols=138 Identities=13% Similarity=-0.007 Sum_probs=93.5
Q ss_pred CCeEEeeccc-chhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEEEeec--CCCCCcCHHHHHHHHh
Q 023599 110 NRVSTVQCLS-GSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTYHYYD--PKTNGLDFQGMLQDLG 184 (280)
Q Consensus 110 ~~i~~v~t~g-~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~~~ 184 (280)
+++++ +.| ||+|++++ +.+++.+||++++..-+... +..+++.+|+ +..+...+ +++..++++.++. .
T Consensus 56 ~~v~~--~~gsgT~a~ea~--~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~ 128 (349)
T TIGR01364 56 YEVLF--LQGGATGQFAAV--PLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--S 128 (349)
T ss_pred ceEEE--EcCCchHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--C
Confidence 45666 655 99999999 88888899998888766533 4666778898 66666411 1223456665442 2
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
+ +..+|.+++..|.||+..+ ++++.+++++++|.+-.-...+.+ +.+. + +++.|.-|.
T Consensus 129 ~---~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss~g~~~id--------~~~~-d--~~~~ssqK~ 186 (349)
T TIGR01364 129 E---DAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSNILSRPID--------VSKF-G--LIYAGAQKN 186 (349)
T ss_pred C---CCCEEEEcCCCCcccEecc--------eecccCCCeEEEEccccccCccCC--------HHHc-c--EEEEecccc
Confidence 2 2347888888899998664 556678999999998765544321 1122 2 788889999
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
+|.|| +|.+++.
T Consensus 187 lgP~G--lg~l~~s 198 (349)
T TIGR01364 187 IGPAG--LTVVIVR 198 (349)
T ss_pred cCCCc--eEEEEEC
Confidence 99776 5555543
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.1e-06 Score=74.02 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=127.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.++..|||..|.--..-|+ -.+..++++.+++..-......|......-+|-+.+.+.+-+. ....+.+ +++
T Consensus 54 dG~~ylDf~sgi~v~~~GH-~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~-----~~~~~~f--~~s 125 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGH-NHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGS-----GLKKVFF--GNS 125 (447)
T ss_pred CCCEEEEcccCcchhccCC-CCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcc-----cCCeEEe--cCC
Confidence 4567899988631011121 2334445555555521112233333223344555555543221 1255666 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-HHHc--------C-----CeeeEEEeecCCC--CCc--------C
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-FAAA--------G-----LAMKTYHYYDPKT--NGL--------D 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-~~~~--------G-----~~~~~v~~~~~~~--~~~--------d 175 (280)
|++|.+++..+.........|+...-+|.+.... +... | ..+..+|..+.-. +.. .
T Consensus 126 GaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~ 205 (447)
T COG0160 126 GAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA 205 (447)
T ss_pred cHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHH
Confidence 9999999965554444456788888888654322 2211 1 1255555522111 111 2
Q ss_pred HHHHHHHHhc---CCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc
Q 023599 176 FQGMLQDLGA---APSGAIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD 251 (280)
Q Consensus 176 ~~~l~~~~~~---~~~~~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 251 (280)
.+.++..+.. .+.+.+.+++..-+.-.|.+.+ .+-++++.++|++||+++|.||+...+.--. ..+.+... +-
T Consensus 206 ~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG--~~fa~E~~-gv 282 (447)
T COG0160 206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG--KMFAFEHF-GV 282 (447)
T ss_pred HHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc--cchhhhhc-CC
Confidence 3445554432 2455677887777777777655 4556999999999999999999998887642 22222222 22
Q ss_pred CCeEEEEecccccccccccccceEEEE
Q 023599 252 GGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 252 ~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+| ++||.+| .|+-+|-++..
T Consensus 283 ~PDiv---t~aK~ig-~G~Pl~avv~r 305 (447)
T COG0160 283 EPDIV---TLAKSLG-GGLPLSAVVGR 305 (447)
T ss_pred CCCEE---Eeccccc-CCCceeEEecc
Confidence 23555 6799998 59999987754
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.9e-07 Score=75.13 Aligned_cols=108 Identities=10% Similarity=0.073 Sum_probs=86.4
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCC--ChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYG--NHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~ 194 (280)
...|+.+++++ +.+++.|||.|++..-+-. .+.+..+.+|+++..++. +.+....++.+++++..++. .+++
T Consensus 74 sgsGh~g~E~a--l~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~--~~G~~~~le~i~~~lsqh~p--~~vf 147 (385)
T KOG2862|consen 74 SGSGHSGWEAA--LVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEA--DIGQAVPLEEITEKLSQHKP--KAVF 147 (385)
T ss_pred ecCCcchHHHH--HHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEec--CcccCccHHHHHHHHHhcCC--ceEE
Confidence 77789999999 8999999999988865442 356777899999999976 55678899999999988743 3777
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ 232 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~ 232 (280)
+++-..-||+.-+ -+..+-++|++|+.++++|.+-+
T Consensus 148 v~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaS 183 (385)
T KOG2862|consen 148 VTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVAS 183 (385)
T ss_pred EEecCccccccch--HHHHHHHHhhcCCeEEEEechhh
Confidence 7767778887654 24556778999999999999864
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-06 Score=76.77 Aligned_cols=209 Identities=11% Similarity=0.126 Sum_probs=128.8
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
-.|||=... +...+.+...+++.. + ...|...+....|.+.+++.+ +. +.++. |+.|.+
T Consensus 42 V~IDLrSDT-----gT~apS~~m~aAM~~-----G-DD~Y~gdpSv~~Lee~vael~-G~-------E~alp--thqGRg 100 (467)
T TIGR02617 42 VFIDLLTDS-----GTGAVTQSMQAAMMR-----G-DEAYSGSRSYYALAESVKNIF-GY-------QYTIP--THQGRG 100 (467)
T ss_pred eEEECccCC-----CCCCCCHHHHHHHHc-----C-CcccccCchHHHHHHHHHHHh-CC-------ceEEE--CCCCch
Confidence 457886544 222355555555443 2 245888888899999999985 33 44555 888899
Q ss_pred HHHHHHHHHHhhc-CCCEEEEeCC--------CCCChHHHHHHcCCeeeEEEee--------cCCCCCcCHHHHHHHHhc
Q 023599 123 SLRIGADFLAKHY-YQHTVYLSQP--------TYGNHPNFFAAAGLAMKTYHYY--------DPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 123 al~~~~~~~~~~~-~Gd~Vli~~P--------~y~~~~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~~~~ 185 (280)
+-.++ +..+++ +||++.+..+ .|..........|+.++.++.. .+..+.+|++++++++.+
T Consensus 101 aE~Il--~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~ 178 (467)
T TIGR02617 101 AEQIY--IPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEE 178 (467)
T ss_pred HHHHH--HHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhh
Confidence 98888 666677 7887775443 2232345566788887776431 122467899999999986
Q ss_pred CC-CCc--EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC----ccc--CcCCChhHHHHhhh---cCC
Q 023599 186 AP-SGA--IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG----FVM--NMDADALPVRMFVA---DGG 253 (280)
Q Consensus 186 ~~-~~~--~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~----~~~--~~~~~~~~~~~~~~---~~~ 253 (280)
.. .+. ...-++ .|-=-|+.+|.+.++++.++|++||+.++.|-+-.. |+- +......++..+.. ...
T Consensus 179 ~g~~~i~~v~~tlt-~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~a 257 (467)
T TIGR02617 179 VGPNNVPYIVATIT-CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYA 257 (467)
T ss_pred cCCCCceeeeeeEE-EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccC
Confidence 31 111 111111 122358899999999999999999999999975311 110 00001122233321 112
Q ss_pred eEEEEecccccccccccccceEEEEc
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.. +..|+||.+++ .+|-+++..
T Consensus 258 Ds-vt~slsKglgA---pvGg~Lag~ 279 (467)
T TIGR02617 258 DM-LAMSAKKDAMV---PMGGLLCFK 279 (467)
T ss_pred CE-EEEEcCCCCCC---cccceEEec
Confidence 33 47799998865 488777654
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.2e-06 Score=76.91 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=93.8
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhc--CC-CEEEEeCCCCCChHHHHH-HcCCeee---EEEeecCCC--CCcCHHHHH
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHY--YQ-HTVYLSQPTYGNHPNFFA-AAGLAMK---TYHYYDPKT--NGLDFQGML 180 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~--~G-d~Vli~~P~y~~~~~~~~-~~G~~~~---~v~~~~~~~--~~~d~~~l~ 180 (280)
+.+.+ +++|++|.+.+.++..... .| .+|+...-+|.+...... ..|-... +.|....-. ...|.+.++
T Consensus 142 ~~v~f--~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 219 (459)
T PRK11522 142 KYSFF--CNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMR 219 (459)
T ss_pred CEEEE--eCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHH
Confidence 56777 9999999999955443332 23 368888888877643332 2221110 111100000 012677888
Q ss_pred HHHhc---CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 181 QDLGA---APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 181 ~~~~~---~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+.. ...+..++++..-..-.|.. .+.+-++++.++|++||+++|.||+...|.-.. ..+... ..+..+.++
T Consensus 220 ~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG--~~~a~e-~~gv~PDiv 296 (459)
T PRK11522 220 TALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG--KMFACE-HENVQPDIL 296 (459)
T ss_pred HHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc--hhhhhh-ccCCCCCEE
Confidence 87753 22334456655544445664 466778999999999999999999997653211 111111 112223444
Q ss_pred EEecccccccccc-cccceEEEE
Q 023599 257 VAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 257 ~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
+++|.+| .| +-+|.+++.
T Consensus 297 ---t~gK~lg-gG~~Pigav~~~ 315 (459)
T PRK11522 297 ---CLAKALG-GGVMPIGATIAT 315 (459)
T ss_pred ---Eechhhh-CCCccceeEEEc
Confidence 7899998 67 578877764
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=74.44 Aligned_cols=159 Identities=12% Similarity=0.087 Sum_probs=93.8
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH-HHHHcCC------------eeeEEEeecCCC--CC-
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN-FFAAAGL------------AMKTYHYYDPKT--NG- 173 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~-~~~~~G~------------~~~~v~~~~~~~--~~- 173 (280)
+.+.+ +++|++|.+++..+........+|+...-+|.+... .+...|. .+..+|..+... +.
T Consensus 131 ~~v~f--~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (459)
T PRK06082 131 NRVLF--APGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPD 208 (459)
T ss_pred CEEEE--CCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCC
Confidence 56777 999999999995444333233688888888866532 2222221 112222100000 00
Q ss_pred c------CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 174 L------DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 174 ~------d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
. .++.+++.+.+. .+..+|++....+--+...+.+-+++|.++|++||+++|.||+...|.-.. ..+. ..
T Consensus 209 ~~~~~~~~~~~l~~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG--~~fa-~e 284 (459)
T PRK06082 209 ADGSDVHYADYLEYVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG--EWFT-HQ 284 (459)
T ss_pred hhHHHHHHHHHHHHHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc--hhhH-hH
Confidence 0 135577777543 234455655444444456778889999999999999999999998763321 1111 12
Q ss_pred hhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
..+..+++++ ++|.++ .| +-+|.+++.
T Consensus 285 ~~gv~PDiv~---~gKgl~-gG~~P~~av~~~ 312 (459)
T PRK06082 285 AYGIEPDILC---IGKGLG-GGLVPIAAMITK 312 (459)
T ss_pred hhCCCCCEEE---eccccc-CCCCcceEEEEc
Confidence 2233345554 899998 56 478877654
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=78.65 Aligned_cols=155 Identities=9% Similarity=-0.081 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEEEe
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTYHY 166 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~~ 166 (280)
.+.++.+++++... ...++++ .+.+|+.+++++ +.+++.+||++++..-+..+ +...++.+|.. ..+..
T Consensus 51 ~~~~~~l~~l~~~~-----~~~~v~~-~~gsgt~~~Ea~--~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~ 121 (360)
T PRK05355 51 EEAEADLRELLNIP-----DNYKVLF-LQGGASLQFAMV--PMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAAS 121 (360)
T ss_pred HHHHHHHHHHhCCC-----CCcEEEE-EcCCchHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEec
Confidence 45666666665321 1134544 378889999999 89999999998888766543 35567778864 55554
Q ss_pred ecCCCCCcCHHHHHH-HHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 167 YDPKTNGLDFQGMLQ-DLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~-~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
+......+..++++ .+.++++ +|.+++..|.||...+ ++++| +++++|+|.+-.-...+.
T Consensus 122 -~~~~g~~~~~~~~~~~l~~~~~---~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss~g~~~i------- 182 (360)
T PRK05355 122 -SEDDGFTYIPPLDEWQLSDDAA---YVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSDILSRPI------- 182 (360)
T ss_pred -ccccCCCCCCChhhccCCCCCC---EEEEccCCCcceEecC--ccccc------CCCcEEEEcCccccCccC-------
Confidence 22122334444444 5554433 7888888899999874 34444 899999999876554431
Q ss_pred HHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
.+.+. . +++.|--|.+|.|| +|.+++
T Consensus 183 -dv~~~--d-~~~~ssqK~lgP~G--lg~l~~ 208 (360)
T PRK05355 183 -DVSKF--G-LIYAGAQKNIGPAG--LTIVIV 208 (360)
T ss_pred -CHHHc--c-EEEEeccccccCCc--eEEEEE
Confidence 11122 2 77888889998665 444444
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.4e-06 Score=75.25 Aligned_cols=221 Identities=9% Similarity=-0.034 Sum_probs=114.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCC-CHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITG-LPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G-~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+|+..|.....-|+. .+..++++.+++. .. .|....+ ..+.+..+++.+...-. ...+.+.+ ++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~--~~---~~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f--~~ 110 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYN-HPQLNAAMKSQID--AM---SHVMFGGITHPPAIELCRKLVAMTP--QPLECVFL--AD 110 (428)
T ss_pred CCCEEEEcchhHHhhcCCCC-CHHHHHHHHHHHh--hc---CCccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eC
Confidence 45678899877421222322 2333344444443 11 1111100 12334445555433211 11256777 99
Q ss_pred cchhHHHHHHHHHHhh----cC-CCEEEEeCCCCCChHHHHHHc-CC-------------eeeEEEeecCC---CC-CcC
Q 023599 119 SGSGSLRIGADFLAKH----YY-QHTVYLSQPTYGNHPNFFAAA-GL-------------AMKTYHYYDPK---TN-GLD 175 (280)
Q Consensus 119 g~~~al~~~~~~~~~~----~~-Gd~Vli~~P~y~~~~~~~~~~-G~-------------~~~~v~~~~~~---~~-~~d 175 (280)
+|++|.+.+.++.... .. ..+|+...-+|.+........ +. .+..++..+.. .+ .-|
T Consensus 111 SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d 190 (428)
T PRK07986 111 SGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERD 190 (428)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHH
Confidence 9999999985544332 12 367888888887643222111 11 11222220000 00 125
Q ss_pred HHHHHHHHhcCCCCcEEEEecC-CCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 176 FQGMLQDLGAAPSGAIVLLQAS-GHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 176 ~~~l~~~~~~~~~~~~~v~~~~-p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
++.+++.+.....+..+|++.. .+.-.|. ..+++-+++|.++|++||+++|.||++..+.... . ... ....+..+
T Consensus 191 ~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG-~-~fa-~~~~gv~P 267 (428)
T PRK07986 191 IAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG-K-LFA-CEHAGIAP 267 (428)
T ss_pred HHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC-C-eee-ecccCCCC
Confidence 6788888865433444555543 2444454 3467889999999999999999999996663221 1 100 11112223
Q ss_pred eEEEEecccccccccc-cccceEEE
Q 023599 254 ECLVAQSYSKTMGLYG-ERVGALSV 277 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G-~RvG~~v~ 277 (280)
.++ .++|.++ .| +-+|.+++
T Consensus 268 Di~---t~gK~l~-gG~~p~~av~~ 288 (428)
T PRK07986 268 DIL---CLGKALT-GGTMTLSATLT 288 (428)
T ss_pred CEE---Eechhhh-CCcccCcchhc
Confidence 455 4899997 56 35665443
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.5e-05 Score=72.28 Aligned_cols=222 Identities=13% Similarity=0.078 Sum_probs=116.6
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...||+..|.-...-|+- .+..+++..+++. .. .+ +.... ..+.+..+++.+...-.. ..+.+.+ +++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~--~~-~~-~~~~~-~~~~~~~lae~L~~~~p~--~~~~v~f--~~S 120 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQ-HPKVVAAIQEQAA--RL-CT-VAPAH-ANDARSEAARLIAERAPG--DLSKVFF--TNG 120 (451)
T ss_pred CCCEEEEcccCHHhhcCCCC-CHHHHHHHHHHHH--hc-CC-cCCcc-CCHHHHHHHHHHHHhCCC--CCCEEEE--cCC
Confidence 45678899777421222321 2334444444443 11 11 11111 122334444443322110 1257777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCC-----------eeeEEEeecCCC--CC--cC-------H
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGL-----------AMKTYHYYDPKT--NG--LD-------F 176 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~-----------~~~~v~~~~~~~--~~--~d-------~ 176 (280)
|++|.+.+.++........+|+...-+|.+...... ..|. .+..++..+... +. -| +
T Consensus 121 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK06062 121 GADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL 200 (451)
T ss_pred hHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence 999999995443332233678888888876643322 1111 112222100000 10 12 5
Q ss_pred HHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe
Q 023599 177 QGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE 254 (280)
Q Consensus 177 ~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 254 (280)
+.+++.+... +.+..+|++..-..--|.+ .+.+-+++|.++|++||+++|.||+...|.-.. ..+. ....+..+.
T Consensus 201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG--~~~a-~~~~gv~PD 277 (451)
T PRK06062 201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTG--KWFA-IEHFGVVPD 277 (451)
T ss_pred HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCc--HHHH-HHhcCCCCC
Confidence 7778877543 2334455554444334555 467889999999999999999999998763221 1111 111122334
Q ss_pred EEEEeccccccccccc-ccceEEEE
Q 023599 255 CLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 255 ~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
+ -.|+|.++ .|+ -+|.++..
T Consensus 278 i---~t~gK~lg-gG~~Pigav~~~ 298 (451)
T PRK06062 278 L---ITFAKGVN-SGYVPLGGVAIS 298 (451)
T ss_pred e---eeechhhh-cCCcCcEEEEEc
Confidence 3 46799998 674 78877654
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-05 Score=72.72 Aligned_cols=224 Identities=13% Similarity=0.038 Sum_probs=118.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...||+..|.....-|+. .++.+++..+++.+ ....+.+ .. -..+.+..+|+.+...-. -..+.+.+ +++
T Consensus 48 dG~~ylD~~sg~~~~~lGh~-~p~v~~Av~~q~~~-~~~~~~~-~~-~~~~~~~~lAe~L~~~~p--~~~~~v~f--~~s 119 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYG-RTEVAEAIAEQAKE-LAYYHTY-VG-HGTEASITLSKRIIDRAP--AGMSKVYY--GLS 119 (461)
T ss_pred CCCEEEEcccchhhhcCCCC-CHHHHHHHHHHHHh-cCccccc-cc-cCCHHHHHHHHHHHHhCC--CCcCEEEE--eCc
Confidence 45678999888532222322 33444444444441 1111111 00 112334444444432211 11267777 999
Q ss_pred chhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHHc----------C---CeeeEEEeecCCCC---C----
Q 023599 120 GSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAAA----------G---LAMKTYHYYDPKTN---G---- 173 (280)
Q Consensus 120 ~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~~----------G---~~~~~v~~~~~~~~---~---- 173 (280)
|++|.+.+..+.... . +| .+|+...-+|.+........ + ..+..++....... +
T Consensus 120 GSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 199 (461)
T PRK07482 120 GSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEE 199 (461)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHH
Confidence 999999995544321 1 23 57888888887753221111 1 01122221000000 0
Q ss_pred ----cCHHHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 174 ----LDFQGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 174 ----~d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
.+.+.+++.+... +.+...|++..-..-.|.. .+.+-+++|.++|++||+++|.||+...|.--. .... ..
T Consensus 200 ~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG--~~~a-~~ 276 (461)
T PRK07482 200 QFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLG--SMFG-SD 276 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc--chhh-HH
Confidence 1357778777532 3344566655444445666 567789999999999999999999998884321 1111 11
Q ss_pred hhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
..+..+++++ ++|.++ .|+ -+|.+++.
T Consensus 277 ~~gv~PDiv~---~gKgl~-gG~~Pi~av~~~ 304 (461)
T PRK07482 277 HYGIEPDLIT---VAKGLT-SAYAPLSGSIVG 304 (461)
T ss_pred hcCCCCCEEE---Eccccc-cCccccceeeec
Confidence 2233446664 589887 574 67766653
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-06 Score=74.04 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=100.1
Q ss_pred CCCCCC---CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc-CC----CEEEEeCCCCCCh
Q 023599 79 DKEYLP---ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY-YQ----HTVYLSQPTYGNH 150 (280)
Q Consensus 79 ~~~y~~---~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~-~G----d~Vli~~P~y~~~ 150 (280)
.+.|.| .+|..++...+.+||..-.+- +.|.+-.-.|+++=..-+..+.+... .| +.|+||+..++..
T Consensus 95 iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~----DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN 170 (496)
T COG1003 95 IHPFQPEEQVQGYLELIYELQEWLKEITGM----DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN 170 (496)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC
Confidence 455666 467777777777777554432 56655333444332222211222222 33 6899999999988
Q ss_pred HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEccc
Q 023599 151 PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCA 230 (280)
Q Consensus 151 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~ 230 (280)
...+...|.+++.|++ .+++.+|+++|++++.++.. .++++||| ..-+-.+.+++|+++..++|..+-.|-+
T Consensus 171 PASAam~G~~VV~V~~--~~~G~VDlddLk~k~~~~~A---alMiTnPs---T~GvFE~~I~ei~~ivH~~Gg~vY~DGA 242 (496)
T COG1003 171 PASAAMAGFKVVVVKC--DENGNVDLDDLRAKAEDNLA---ALMITNPS---TLGVFEEDIREICEIVHEAGGQVYYDGA 242 (496)
T ss_pred hhhHhhcCceEEEEec--CCCCCccHHHHHHHhcccee---EEEeccCc---ccccchhhHHHHHHHHHHcCCEEEecCc
Confidence 8888999999999999 44568999999999986543 77775553 4446788899999999999999999987
Q ss_pred CCC
Q 023599 231 YQG 233 (280)
Q Consensus 231 y~~ 233 (280)
.-.
T Consensus 243 NlN 245 (496)
T COG1003 243 NLN 245 (496)
T ss_pred chh
Confidence 633
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-05 Score=73.72 Aligned_cols=208 Identities=17% Similarity=0.198 Sum_probs=110.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCC-CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYL-PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...||+..|.-...-|+. .+..++++.+++. ... .+. +.....+|.+.+++.+-+ .+.+.+ ++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~--~~~--~~~~~~~~~~~la~~l~~~~p~-------~~~v~f--~~ 111 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHA-YPPVVEAVREALQ--DGC--NFTRPSAIELDAAESFLELIDG-------ADMVKF--CK 111 (431)
T ss_pred CCCEEEEccccccchhcCCC-CHHHHHHHHHHHH--hCc--CCCCCCHHHHHHHHHHHHhCCc-------cceEEE--ec
Confidence 45678999877421222321 2334444444444 221 122 111112345555554311 256777 99
Q ss_pred cchhHHHHHHHHHHhhcCCC-EEEEe-CCCCCChHHHH-----HHcCCe--e--eEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 119 SGSGSLRIGADFLAKHYYQH-TVYLS-QPTYGNHPNFF-----AAAGLA--M--KTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd-~Vli~-~P~y~~~~~~~-----~~~G~~--~--~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
+|++|.+.+.++.... .|. +|+.. .-+|..+.... ...|.. . ..+.+ + .-|++.+++.+.+..
T Consensus 112 sGseA~e~AlklAr~~-tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~--~---~~d~~~l~~~l~~~~ 185 (431)
T PRK06209 112 NGSDATSAAVRLARAY-TGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF--R---YNDIASLEALFEDHP 185 (431)
T ss_pred CHHHHHHHHHHHHHHH-hCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc--C---CCCHHHHHHHHHhCC
Confidence 9999999995543322 443 45443 22222111000 000110 0 01111 1 127899999886543
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
.+..+|++. | -.|...+.+.+++|.++|++|++++|.||+...+.... .......+..+. +.+++|.+|
T Consensus 186 ~~~aavi~E-p--v~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~----~g~~~~~gv~PD---i~t~gK~lg- 254 (431)
T PRK06209 186 GRIACVILE-P--ATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM----RGAQKLYGIVPD---LSCFGKALG- 254 (431)
T ss_pred CCEEEEEEc-c--ccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc----chhhHHhCCCcc---eeeehhhhc-
Confidence 334444443 3 23446678889999999999999999999986664321 011111122223 467899998
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
.|+-+|.+++.
T Consensus 255 gG~p~~av~~~ 265 (431)
T PRK06209 255 NGFAVSALAGK 265 (431)
T ss_pred CCcccEEEEEH
Confidence 68888887764
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.4e-06 Score=76.78 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
+.+..+..|+. ++.+ .-..+ ++|.+.|+.++ +.+.+.+||.|+++..++-.....+...|+.++++.-.
T Consensus 72 i~eAqe~aA~~-fgAd------~tyFv--vNGTS~ank~v--i~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~ 140 (557)
T COG1982 72 IKEAQELAARV-FGAD------HTYFV--VNGTSTANKAV--INAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPS 140 (557)
T ss_pred HHHHHHHHHHH-hCCC------ceEEE--ECCccHHHHHH--HHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCC
Confidence 34555555555 4442 23344 99999999999 89999999999999999987777788899998887542
Q ss_pred -cC-CC--CCcCHHHHHHHHhcCCCCcEEEEecCCCCCC--CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 168 -DP-KT--NGLDFQGMLQDLGAAPSGAIVLLQASGHNPT--GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 168 -~~-~~--~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPT--G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
++ -+ .+++.+.+++++.+++...++++++ ||| |++++ .++|++++.+.++|+..|++..-. ++.. +
T Consensus 141 ~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vit---npTYdGv~~n---~~~i~~~~~~~~a~v~~deah~~~-~~~~-~ 212 (557)
T COG1982 141 RNPLYGIIGGIPLETFKEALLAHPDAEKLAVIT---NPTYDGVCYN---LRKIVELLHHYGAWVLYDEAHPAH-FDFS-P 212 (557)
T ss_pred CCccccccCCCCHHHHHHHHHhChhhheeEEEe---cCccceEeec---HHHHHHHHhhcCceEEhhhcCccc-cccc-c
Confidence 22 12 6789999999998875431466663 555 66666 456678888899999999976433 2211 1
Q ss_pred hhHHHHhhhcCCeEEEEeccccccc
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
..+- .......+++..|.-|..+
T Consensus 213 ~l~~--~~~~~~~~~~tqS~HK~l~ 235 (557)
T COG1982 213 MLPE--SALNGGADFVTQSTHKLLA 235 (557)
T ss_pred cCcc--hhhhcCceEEEechhhhhh
Confidence 1111 1122457889999999874
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-05 Score=71.67 Aligned_cols=155 Identities=11% Similarity=0.021 Sum_probs=91.5
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-HHH-cCCeee------EEE--ee---cCCCCCcCH
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-FAA-AGLAMK------TYH--YY---DPKTNGLDF 176 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-~~~-~G~~~~------~v~--~~---~~~~~~~d~ 176 (280)
+.+.+ +++|++|.+.+.++.......++|+...-+|.++... +.. .+.+.. .++ .. ....+ -|+
T Consensus 131 ~~v~F--~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~ 207 (453)
T PRK07046 131 PYWQV--ATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDL 207 (453)
T ss_pred CEEEE--ECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCH
Confidence 67777 9999999999955443332346788888888776322 111 000000 000 00 00011 278
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 255 (280)
+.+++.+.. .+...|++..-..-.|. ..+.+-++++.++|+++|+++|.||+.. |...... . ....+..+.+
T Consensus 208 ~~l~~~l~~--~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg-~---~~~~gv~PDi 280 (453)
T PRK07046 208 AALEAALAD--GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGG-Y---TRAHGLEPDF 280 (453)
T ss_pred HHHHHHhCC--CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcc-h---hHHhCCCccc
Confidence 999988853 23445554433322343 3456789999999999999999999986 4332111 1 1222323455
Q ss_pred EEEecccccccccccccceEEEE
Q 023599 256 LVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 256 i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ .|+|.++ .|+-+|.++..
T Consensus 281 ~---t~gK~lg-gG~Pi~av~g~ 299 (453)
T PRK07046 281 L---VVGKPIA-GGVPCAVYGFS 299 (453)
T ss_pred e---eehhhhc-CCCcceeeeeh
Confidence 4 4799998 68888876653
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-05 Score=71.68 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=91.9
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHH-HHHcCC-------------eeeEEEeecC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNF-FAAAGL-------------AMKTYHYYDP 169 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~-~~~~G~-------------~~~~v~~~~~ 169 (280)
+.+.+ +++|++|.+.+..+.... .+| .+|+.-.-+|.+.... +...|- .+..+|..+.
T Consensus 105 ~~v~f--~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~ 182 (429)
T PRK06173 105 NKIFF--ADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI 182 (429)
T ss_pred CEEEE--eCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCc
Confidence 67777 999999999985443322 133 5788888888774211 111110 1122222000
Q ss_pred C---CC-CcCHHHHHHHHhcCCCCcEEEEecCC-CCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 170 K---TN-GLDFQGMLQDLGAAPSGAIVLLQASG-HNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 170 ~---~~-~~d~~~l~~~~~~~~~~~~~v~~~~p-~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
. .+ .-+++.+++.+.....+...+++..- +.-.|.. .+++-++++.++|++||+++|.||++..|.... ...
T Consensus 183 ~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG--~~~ 260 (429)
T PRK06173 183 KFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG--KLF 260 (429)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC--cch
Confidence 0 00 01366677777644444556666542 5555655 688889999999999999999999996653221 111
Q ss_pred HHHHhhhcCCeEEEEeccccccccccc-ccceEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGE-RVGALSV 277 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~ 277 (280)
.. ...+..+.+++ |+|.++ .|. =+|-+++
T Consensus 261 a~-~~~gv~PDiv~---~gK~l~-gG~~p~~a~~~ 290 (429)
T PRK06173 261 AL-EHAGVVPDIMC---IGKALT-GGYLTLSATIT 290 (429)
T ss_pred HH-HhcCCCCCEEE---eehhhh-CCccccceEEe
Confidence 11 11222334443 899996 563 4555543
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-05 Score=70.92 Aligned_cols=207 Identities=17% Similarity=0.158 Sum_probs=123.2
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+...||+-.+.= +..+--..+.+.++.++... .+ ..|..+. ++.-.+|+.+...-. ..+.+-+ +++|
T Consensus 52 Gn~YIDy~~~~G--p~ilGH~~p~V~~Av~~~l~-~G--~~fg~Pt---e~Ei~~Aell~~~~p---~~e~vrf--vnSG 118 (432)
T COG0001 52 GNEYIDYVLGWG--PLILGHAHPAVVEAVQEQLE-RG--LSFGAPT---ELEVELAELLIERVP---SIEKVRF--VNSG 118 (432)
T ss_pred CCEeeehhccCc--ccccCCCCHHHHHHHHHHHH-hc--CCCCCCC---HHHHHHHHHHHHhcC---cccEEEE--ecch
Confidence 456777765541 12222333445444444331 33 3454442 333444554433321 1377778 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcC--C-----------------eeeEEEeecCCCCCcCHHHHH
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAG--L-----------------AMKTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G--~-----------------~~~~v~~~~~~~~~~d~~~l~ 180 (280)
|+|...+.++..-...-|+|+..+-+|.++.+.+. ..| . ....+|+ -|++.++
T Consensus 119 TEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y-------ND~~al~ 191 (432)
T COG0001 119 TEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-------NDLEALE 191 (432)
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC-------CCHHHHH
Confidence 99999885544333344899999999987755543 222 1 1122222 3899999
Q ss_pred HHHhcCCCCc-EEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 181 QDLGAAPSGA-IVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 181 ~~~~~~~~~~-~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
+++.+...+. .+++=+-+.| -|. ...++-++.|.++|+++|+++|.||+.-.|..... ..+....+ .+. +
T Consensus 192 ~~~~~~g~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~g-Gaq~~~gi---~PD---l 263 (432)
T COG0001 192 EAFEEYGDDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALG-GAQGYYGV---EPD---L 263 (432)
T ss_pred HHHHHcCCcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCc-ccccccCc---Ccc---h
Confidence 9998875444 4455445555 233 34567789999999999999999999987766421 12111111 112 5
Q ss_pred ecccccccccccccceEE
Q 023599 259 QSYSKTMGLYGERVGALS 276 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v 276 (280)
..|.|..| -|+-+|.+-
T Consensus 264 ttlGKiIG-GGlP~ga~g 280 (432)
T COG0001 264 TTLGKIIG-GGLPIGAFG 280 (432)
T ss_pred hhhhhhhc-CCcceeeec
Confidence 67899998 888888653
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.2e-05 Score=70.98 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=118.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCC--CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEY--LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+...||+..|.....-|+- .+..++++.+++.+ -.....+ .......+|-+.+++..- -..+.+.+ +
T Consensus 44 dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~-~~~~~~~~~~~~~~~~~lae~L~~~~p------~~~~~v~f--~ 113 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYG-QESIVEAAAEQMRE-LPYATGYFHFGSEPAIRLAAKLAERAP------GSLNHVYF--T 113 (459)
T ss_pred CCCEEEECcccHHhccCCCC-CHHHHHHHHHHHHh-cCCcccccccCCHHHHHHHHHHHhhCC------CCcCEEEE--e
Confidence 45678999777431222322 33444444444441 1111111 011112234444444321 11256777 9
Q ss_pred ccchhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHH-c---------CC---eeeEEEeecCCC--CCcC-
Q 023599 118 LSGSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAA-A---------GL---AMKTYHYYDPKT--NGLD- 175 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~-~---------G~---~~~~v~~~~~~~--~~~d- 175 (280)
++|++|.+.+.++.... . +| .+|+...-+|.+....... . |. .+..++...... +.-|
T Consensus 114 ~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (459)
T PRK05965 114 LGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDP 193 (459)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCCh
Confidence 99999999995543322 1 33 5788888899776432111 1 10 112222200000 1123
Q ss_pred -------HHHHHHHHhcCC-CCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 176 -------FQGMLQDLGAAP-SGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 176 -------~~~l~~~~~~~~-~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
++.+++.+.+.. .+...|++..-+.-.|.. .+.+-++++.++|++||+++|.||+...|.--. ..+...
T Consensus 194 ~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG--~~~a~~ 271 (459)
T PRK05965 194 QAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG--PLFACE 271 (459)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc--hhhhHh
Confidence 256777776432 344566665555555654 577888999999999999999999998884321 111111
Q ss_pred HhhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
..+..+++++ ++|.++ .|+ -+|.+++.
T Consensus 272 -~~gv~PDiv~---~gKgl~-gG~~Pi~av~~~ 299 (459)
T PRK05965 272 -AEGVVPDLMT---VAKGLT-SGYVPMGAVLMS 299 (459)
T ss_pred -hcCCCCCeEE---echhhc-cCCcceeEEEEc
Confidence 1233345554 589997 684 88877764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.4e-05 Score=70.74 Aligned_cols=160 Identities=9% Similarity=-0.009 Sum_probs=95.1
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHH-HHHcC------------CeeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNF-FAAAG------------LAMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~-~~~~G------------~~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+..+.... .+| .+|+...-+|.+.... +...| ..+..++..+..
T Consensus 115 ~~v~f--~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~ 192 (453)
T PRK06943 115 GHAFF--ASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDAR 192 (453)
T ss_pred CEEEE--eCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcc
Confidence 46777 999999999995443211 133 5788888888765321 11111 012223321110
Q ss_pred C--CC--------cCHHHHHHHHhcCCCCcEEEEecC-CCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 171 T--NG--------LDFQGMLQDLGAAPSGAIVLLQAS-GHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 171 ~--~~--------~d~~~l~~~~~~~~~~~~~v~~~~-p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
. +. -+++.+++.+.....+...|++.. .+.-.|. ..+.+-++++.++|++||+++|.||+...|.--.
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG 272 (453)
T PRK06943 193 GARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG 272 (453)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCc
Confidence 0 00 124677777764444455666553 2455565 4678889999999999999999999998874321
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
..+.. ...+..++++++ +|.++ .| +-+|.+++.
T Consensus 273 --~~fa~-~~~gv~PDivt~---gKgl~-gG~~Pi~av~~~ 306 (453)
T PRK06943 273 --TFFAC-EQAGVWPDFLCL---SKGIS-GGYLPLSLVLSR 306 (453)
T ss_pred --chhHH-HhCCCCCCeEee---ehhhc-cCcccceEEEEc
Confidence 11111 122333466654 89987 68 478877654
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=77.78 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecc-cchhHHHHHHHHHHhhcC-CCEEEEeCCCCCC-hHH-HHHHcCC-eee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCL-SGSGSLRIGADFLAKHYY-QHTVYLSQPTYGN-HPN-FFAAAGL-AMK 162 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~-g~~~al~~~~~~~~~~~~-Gd~Vli~~P~y~~-~~~-~~~~~G~-~~~ 162 (280)
..+.|+.+++++... .+++|++ +. ++|.+++++ +.+++.+ ++.|++ .-.|+. +.. ..+.+|+ +++
T Consensus 50 ~~~~r~~l~~l~~~~-----~~~~v~~--~~gs~T~~~~~~--~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~ 119 (378)
T PRK03080 50 LKRVIEGTRELLSLP-----EGYEVGI--VPGSDTGAWEMA--LWSLLGARRVDHLA-WESFGSKWATDVVKQLKLEDPR 119 (378)
T ss_pred HHHHHHHHHHHhCCC-----CCceEEE--ECCchHHHHHHH--HHhcCCCCcceEEE-eCHHHHHHHHHHHhhcCCCCce
Confidence 356777777775432 1256776 64 899999999 7777764 444444 323322 222 2256788 888
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. +++..+|++.++ . ++ .|.+++..|.||...+.+++ ++ +++|+++++|.+..-...+-+ .
T Consensus 120 ~~~~--~~g~~~d~~~i~----~-~~---~V~~~h~~t~tG~~~pi~~I---~~--~~~g~~~vVDa~qs~G~~pid--v 182 (378)
T PRK03080 120 VLEA--DYGSLPDLSAVD----F-DR---DVVFTWNGTTTGVRVPVARW---IG--ADREGLTICDATSAAFALPLD--W 182 (378)
T ss_pred Eecc--CCCCCCCHhhcC----C-CC---CEEEEecCCccceeccchhh---cc--ccCCCeEEEecccccccCCCC--H
Confidence 8886 344567766533 2 23 46778889999999985544 55 778999999998766555321 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+ . +++.|.-|.++. --.+|++++.
T Consensus 183 ---~~i-----D-~~~~s~~K~l~~-P~G~g~l~v~ 208 (378)
T PRK03080 183 ---SKL-----D-VYTFSWQKVLGG-EGGHGMAILS 208 (378)
T ss_pred ---HHC-----c-EEEEehhhhCCC-CCceEEEEEC
Confidence 111 2 667888898853 2345655543
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5e-05 Score=70.56 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=94.0
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+..+.... . +| .+|+...-+|.+........ |. .+..+|..+..
T Consensus 108 ~~v~f--~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~ 185 (466)
T PRK07030 108 SRCFY--ADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCY 185 (466)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcc
Confidence 57777 999999999995443221 1 33 57888888887654332221 11 12223221000
Q ss_pred --CCC--------cCHHHHHHHHhcCCCCcEEEEecC-CCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 171 --TNG--------LDFQGMLQDLGAAPSGAIVLLQAS-GHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 171 --~~~--------~d~~~l~~~~~~~~~~~~~v~~~~-p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
..+ -+++.+++.+.+...+...|++.. .+.-.|. ..+++-+++|.++|++||+++|.||+...|.--.
T Consensus 186 ~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG 265 (466)
T PRK07030 186 LRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG 265 (466)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc
Confidence 001 124566777765444445555543 2333455 4567889999999999999999999998774321
Q ss_pred CCChhHHHHhhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
..+. ....+..+.++++ +|.++ .|+ -+|.+++.
T Consensus 266 --~~~a-~~~~gv~PDiv~~---gKgl~-gG~~Pi~av~~~ 299 (466)
T PRK07030 266 --TMFA-CEQAGIRPDFLCL---SKALT-GGYLPLAAVLTT 299 (466)
T ss_pred --cchH-HHhcCCCCCEEee---ehhcc-CCcccceEEEec
Confidence 1111 1122333455544 89988 684 78877764
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.6e-05 Score=70.16 Aligned_cols=222 Identities=14% Similarity=0.087 Sum_probs=111.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCC--CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEY--LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+...||+..|.....-|+ -.+..++++.+++.+ -.....+ .......+|.+.+++++-. ..+.+.+ +
T Consensus 52 dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~-~~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~v~f--~ 121 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQ-LPYYNMFFHTTHPAVIELSELLFSLLPG------HYSHAIY--T 121 (460)
T ss_pred CCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHh-CCCeecccccCCHHHHHHHHHHHHhCCC------CcCEEEE--e
Confidence 3567899877743222343 233444444444441 1100001 0111123444555444211 1256777 9
Q ss_pred ccchhHHHHHHHHHHhh-----cCCCE-EEEeCCCCCChHH-HHHHcCCe-----------eeEEEeecC--CCCCc---
Q 023599 118 LSGSGSLRIGADFLAKH-----YYQHT-VYLSQPTYGNHPN-FFAAAGLA-----------MKTYHYYDP--KTNGL--- 174 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~-----~~Gd~-Vli~~P~y~~~~~-~~~~~G~~-----------~~~v~~~~~--~~~~~--- 174 (280)
++|++|.+.+..+.... ++++. |+...-+|.+... .+...|.. +..+|.... ..+..
T Consensus 122 ~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 201 (460)
T PRK12403 122 NSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPA 201 (460)
T ss_pred CCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChH
Confidence 99999999995444322 23333 4455567765422 22222211 222221000 00011
Q ss_pred -----CHHHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 175 -----DFQGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 175 -----d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
+.+.+++.+.+. ..+..+|++..-..--|.+ .+.+-+++|.++|++||+++|.||+...|.-.. .... ..
T Consensus 202 ~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG--~~~a-~e 278 (460)
T PRK12403 202 EFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG--EWFA-HE 278 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc--hhhh-hh
Confidence 124565555432 2334455555444444654 467778999999999999999999997764321 1111 11
Q ss_pred hhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
..+..+++++ ++|.++ .|+ -+|.+++.
T Consensus 279 ~~gv~PDiv~---~gK~lg-gG~~Piga~v~~ 306 (460)
T PRK12403 279 HFGFEPDTLS---IAKGLT-SGYVPMGGLVLS 306 (460)
T ss_pred hcCCCCCeEE---Eccccc-ccccceEEEEEC
Confidence 1222345553 899998 674 78877653
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.4e-05 Score=70.49 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=92.2
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhc-----CC-CEEEEeCCCCCChHHHHH-Hc---------C---CeeeEEEeecC-
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHY-----YQ-HTVYLSQPTYGNHPNFFA-AA---------G---LAMKTYHYYDP- 169 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~-----~G-d~Vli~~P~y~~~~~~~~-~~---------G---~~~~~v~~~~~- 169 (280)
+.+.+ +++|++|.+.+..+..... +| .+|+...-+|.+.....- .. + ..+..+|....
T Consensus 107 ~~v~f--~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~ 184 (442)
T PRK13360 107 NHVFF--TNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDL 184 (442)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchh
Confidence 56777 9999999999854433221 22 578888888877532111 11 1 11223332100
Q ss_pred C--CCCc--------CHHHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 170 K--TNGL--------DFQGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 170 ~--~~~~--------d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
. .+.. ..+.+++.+... ..+..+|++..-.--.|.. .+.+-+++|.++|++|++++|.||++..|.--
T Consensus 185 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~Grt 264 (442)
T PRK13360 185 ARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRL 264 (442)
T ss_pred hccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence 0 0111 145777777533 2344566655544445554 46777899999999999999999999776321
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
.. ... ....+....++ +|+|.++ .| +-+|.+++.
T Consensus 265 G~--~~a-~~~~gv~PDiv---t~gK~l~-gG~~P~gav~~~ 299 (442)
T PRK13360 265 GA--PFA-AQYFGVTPDLL---TCAKGLT-NGAIPMGAVFVS 299 (442)
T ss_pred cc--chh-hhhcCCCCcee---eeeeccc-cCccceEEEEEc
Confidence 11 111 11112223433 7899997 46 577776553
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4e-05 Score=68.15 Aligned_cols=210 Identities=17% Similarity=0.097 Sum_probs=127.9
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHH-HHHHHHhCCCCccccCCCeEEeecccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNK-LSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~-~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
..+||.+-...++.-|.....+..-.+...+.+ ....+.|+-..|...-|- .+++.+.+..+ .+.+++ ++..
T Consensus 20 ~~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~-~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~----aea~~i--vnnn 92 (395)
T COG1921 20 RRVINAIGTVLMTNLGRSLYSPEAIEAMKEAMR-APVELETDLKTGKRGARLTELAELLCGLTG----AEAAAI--VNNN 92 (395)
T ss_pred hhhhhhhhhheeccCCCccCCHHHHHHHHHHhc-ccceeeeecccchhhHHHHHHHHHHhcccc----hhheee--ECCc
Confidence 356666543333334444444433334444442 333446666555543333 33444433322 356666 8888
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeC-----CCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEe
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQ-----PTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~-----P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~ 195 (280)
+.|+.++ +.++.. +.+|++.. ++-++..+.++..|++++++... ......+++.++.+++. .++-+
T Consensus 93 ~aAVll~--~~al~~-~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t----n~t~~~d~~~AIne~ta--~llkV 163 (395)
T COG1921 93 AAAVLLT--LNALAE-GKEVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT----NRTHLKDYELAINENTA--LLLKV 163 (395)
T ss_pred HHHHHHH--Hhhhcc-CCeEEEEccccccCCCCChhHHHHHcCCEEEEeccc----CcCCHHHHHHHhccCCe--eEEEE
Confidence 8888887 555544 54555542 46678899999999999998752 23678999999998865 22222
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceE
Q 023599 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 196 ~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
-+.|.+--..++ +++++++|+++++++++|.+-...+.. . +.++.+...+..+ +++|--|.++ |-+-|.+
T Consensus 164 ~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~-e---~~l~~~la~GaDL-V~~SgdKllg--GPqaGii 233 (395)
T COG1921 164 HSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDK-E---PDLREALALGADL-VSFSGDKLLG--GPQAGII 233 (395)
T ss_pred eecccccccccc---HHHHHHHHHHcCCCEEEecCCcccccc-c---cchhHHHhcCCCE-EEEecchhcC--CCccceE
Confidence 223322222233 456789999999999999998877652 1 1224444555444 4889999987 7788877
Q ss_pred EE
Q 023599 276 SV 277 (280)
Q Consensus 276 v~ 277 (280)
+.
T Consensus 234 ~G 235 (395)
T COG1921 234 VG 235 (395)
T ss_pred ec
Confidence 64
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.5e-05 Score=69.10 Aligned_cols=220 Identities=9% Similarity=-0.048 Sum_probs=113.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCC-CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSA-DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+||..|.-...-|+ -.+..++++.+++.+ ... ...+.......+|-+.+++..- . .-+.+.+ ++
T Consensus 43 dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~-~-----~~~~v~f--~~ 112 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGY-NHPRLNAAAQKQIDK-MSHVMFGGFTHKPAIELCQKLVKMTP-N-----ALDCVFL--AD 112 (427)
T ss_pred CCCEEEEccchHHHhcCCC-CCHHHHHHHHHHHHh-cCCccccccCCHHHHHHHHHHHhhCC-C-----CCCEEEE--eC
Confidence 3567899977642111232 223344444444431 110 1111122223345555555421 1 1257777 99
Q ss_pred cchhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHHHHH-cCCe-------------eeEEEeecCCCC-----C
Q 023599 119 SGSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNFFAA-AGLA-------------MKTYHYYDPKTN-----G 173 (280)
Q Consensus 119 g~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~~~~-~G~~-------------~~~v~~~~~~~~-----~ 173 (280)
+|++|.+.+..+.... .+| .+|+...-+|.+....+.. .|.. +..++. ....+ .
T Consensus 113 sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~ 191 (427)
T TIGR00508 113 SGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPA-PQNRFDEEWNE 191 (427)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCC-CCccccchhHH
Confidence 9999999884433221 133 5788888888765432222 1210 111211 00001 1
Q ss_pred cCHHHHHHHHhcCCCCcEEEEecC-CCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc
Q 023599 174 LDFQGMLQDLGAAPSGAIVLLQAS-GHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD 251 (280)
Q Consensus 174 ~d~~~l~~~~~~~~~~~~~v~~~~-p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 251 (280)
.|++.+++.+.+...+..+|++.. .+.--|. ..+.+.+++|.++|++|++++|+||++..+.... .. .. ....+.
T Consensus 192 ~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G-~~-~~-~~~~~v 268 (427)
T TIGR00508 192 EAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG-KL-FA-CEHAGV 268 (427)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC-cc-ch-hhhcCC
Confidence 146777777765433344555443 1444454 4478999999999999999999999997664321 11 11 111122
Q ss_pred CCeEEEEeccccccccccc-ccceEEE
Q 023599 252 GGECLVAQSYSKTMGLYGE-RVGALSV 277 (280)
Q Consensus 252 ~~~~i~~~S~SK~~~~~G~-RvG~~v~ 277 (280)
...+++ ++|.++ .|+ -++.++.
T Consensus 269 ~pDi~~---~gK~l~-gG~~p~~a~~~ 291 (427)
T TIGR00508 269 VPDILC---VGKALT-GGYMTLSATVT 291 (427)
T ss_pred CCCEEE---echhhh-cCcccceEEEE
Confidence 334443 799996 675 3444443
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.9e-05 Score=69.17 Aligned_cols=160 Identities=11% Similarity=0.047 Sum_probs=95.2
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+.++.... .+| .+|+...-+|.+........ |. .+..+|..+..
T Consensus 117 ~~v~f--~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~ 194 (460)
T PRK06916 117 KKVFY--SDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTY 194 (460)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCccc
Confidence 56777 999999999995543321 233 57888888887754322221 11 12223221000
Q ss_pred --CCC--------cCHHHHHHHHhcCCCCcEEEEecC-CCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 171 --TNG--------LDFQGMLQDLGAAPSGAIVLLQAS-GHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 171 --~~~--------~d~~~l~~~~~~~~~~~~~v~~~~-p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
.+. .+++.+++.+.....+...|++.. .+.-.|.. .+++-++++.++|+++|+++|.||+...|.--.
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG 274 (460)
T PRK06916 195 RSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG 274 (460)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc
Confidence 001 135667777764444455565543 24455655 588889999999999999999999987763321
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
..... ...+..+.++ .++|.++ .| +-+|.+++.
T Consensus 275 --~~~a~-~~~gv~PDiv---~~gK~l~-gG~~Pi~av~~~ 308 (460)
T PRK06916 275 --KMFAC-EHENVTPDIM---TAGKGLT-GGYLPIAITVTT 308 (460)
T ss_pred --hhhHH-HhcCCCCCee---eeehhhh-cCccccceeeec
Confidence 11111 1223334555 4699987 67 478877654
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.2e-05 Score=68.92 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=91.9
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhc-----CC-CEEEEeCCCCCChHHHHHH-cCC------------eeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHY-----YQ-HTVYLSQPTYGNHPNFFAA-AGL------------AMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~-----~G-d~Vli~~P~y~~~~~~~~~-~G~------------~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+..+..... +| .+|+...-+|.+....... .|. .+..++. ++
T Consensus 106 ~~v~f--~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~--~~ 181 (451)
T PRK07678 106 YVIFF--SNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPP--PD 181 (451)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCC--Cc
Confidence 45666 9999999999855443221 34 5788888888765433221 111 1222222 11
Q ss_pred CCCc---------C---HHHHHHHHh-cCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 171 TNGL---------D---FQGMLQDLG-AAPSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 171 ~~~~---------d---~~~l~~~~~-~~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
.+.. | .+.+++.+. ....+...|++.....--|.+ .+.+-++++.++|++||+++|.||+...|.-
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGR 261 (451)
T PRK07678 182 CYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGR 261 (451)
T ss_pred cccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCc
Confidence 1111 1 233566664 223345566655444334555 5677889999999999999999999987743
Q ss_pred CcCCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 237 NMDADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
-. ..+.... .+..+.++ +++|.++ .| +-+|.+++.
T Consensus 262 tG--~~~~~~~-~gv~PDiv---t~gK~lg-gG~~Pi~av~~~ 297 (451)
T PRK07678 262 TG--KAFGFMN-YGVKPDII---TMAKGIT-SAYLPLSATAVK 297 (451)
T ss_pred Cc--hhHHHHh-cCCCCCEE---Eeecccc-cCCcceeEEEEc
Confidence 21 1112222 23334555 6699998 56 578877664
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00013 Score=67.92 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=95.1
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+..+.... .+| .+|+...-+|.+........ |. .+..+|..+..
T Consensus 130 ~~v~f--~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~ 207 (472)
T PRK08742 130 SKVFY--ADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAY 207 (472)
T ss_pred CEEEE--eCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCcc
Confidence 57777 999999999995544322 133 57888888887764332221 11 12223321000
Q ss_pred --CCC--------cCHHHHHHHHhcCCCCcEEEEecC-CCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 171 --TNG--------LDFQGMLQDLGAAPSGAIVLLQAS-GHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 171 --~~~--------~d~~~l~~~~~~~~~~~~~v~~~~-p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
..+ .+++.+++.+.....+...|++.. ...-.|. ..+++-++++.++|++||+++|.||+...|..-.
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG 287 (472)
T PRK08742 208 LAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG 287 (472)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc
Confidence 001 125667777754434455566543 2455565 4578889999999999999999999998875421
Q ss_pred CCChhHHHHhhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
..+... ..+..++++++ +|.++ .|+ -+|.+++.
T Consensus 288 --~~~a~e-~~gv~PDiv~~---gKgl~-gG~~Plaav~~~ 321 (472)
T PRK08742 288 --TLFACE-QAGVMPDLLCL---SKGLT-GGFLPLSAVLAT 321 (472)
T ss_pred --cchHHH-hcCCCCCEEEE---ccccc-CCCCCcceeecc
Confidence 111111 12333456644 89987 674 67776653
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-05 Score=69.75 Aligned_cols=223 Identities=14% Similarity=0.079 Sum_probs=114.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC-CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP-ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+||..|.-...-| ...+.+.++.++... . ..|.. .....+.+..+++.+...-.. ..+++.+ ++
T Consensus 14 dG~~~lD~~~~~~~~~lG--h~~p~i~~ai~~~~~-~---~~~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f--~~ 83 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLG--HNHPEIAEAIAEQAN-K---LNYVSFSGFTHPEAAELAEKLAELFPG--GLDRVFF--AN 83 (339)
T ss_dssp TSEEEEESSHHHHTTTT---BT-HHHHHHHHHHHH-H---CSSCSTTTSEEHHHHHHHHHHHHHSST--TEEEEEE--ES
T ss_pred CCCEEEECCCCccceecC--CCccccchhHHHHhh-h---cccccccceeccchhhhhhhhhhcccc--ccceeee--cc
Confidence 356788997664312222 333444444433321 1 11211 112223344444444322210 2367777 99
Q ss_pred cchhHHHHHHHHHH-----hhcCC-CEEEEeCCCCCChHHHHHHc----------C---CeeeEEEeecCCC---CCcCH
Q 023599 119 SGSGSLRIGADFLA-----KHYYQ-HTVYLSQPTYGNHPNFFAAA----------G---LAMKTYHYYDPKT---NGLDF 176 (280)
Q Consensus 119 g~~~al~~~~~~~~-----~~~~G-d~Vli~~P~y~~~~~~~~~~----------G---~~~~~v~~~~~~~---~~~d~ 176 (280)
+|++|++.+..+.. ...+| .+|+...-+|.+........ + ..+..+|..+... ..-..
T Consensus 84 sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 163 (339)
T PF00202_consen 84 SGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACL 163 (339)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHH
Confidence 99999999955443 02233 68998888887643222111 1 1234555411000 00001
Q ss_pred HHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe
Q 023599 177 QGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE 254 (280)
Q Consensus 177 ~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 254 (280)
+.+++.+.+. .++...+++..-+--.|.. .+.+-+++|.++|++||+++|.||++..+.--.. ... ....+..+.
T Consensus 164 ~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~--~~a-~~~~gv~PD 240 (339)
T PF00202_consen 164 NALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK--FFA-SEHYGVDPD 240 (339)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS--SSG-HHHHTSSSS
T ss_pred HHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC--ccc-eecccccCc
Confidence 1233333221 2233444444333334544 4567789999999999999999999998854211 111 222344456
Q ss_pred EEEEecccccccccccccceEEEEc
Q 023599 255 CLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 255 ~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++++ +|.++ .|+-+|.+++.+
T Consensus 241 iv~~---gK~l~-gG~p~sav~~~~ 261 (339)
T PF00202_consen 241 IVTF---GKGLG-GGLPISAVLGSE 261 (339)
T ss_dssp EEEE---EGGGG-TTSSEEEEEEEH
T ss_pred cccc---ccchh-hhhhcccccccc
Confidence 6654 69998 688888887653
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00015 Score=67.38 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=91.2
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-cC------------CeeeEEEeecCCC--CC--------
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-AG------------LAMKTYHYYDPKT--NG-------- 173 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~G------------~~~~~v~~~~~~~--~~-------- 173 (280)
+++|++|.+.+.++........+|+...-+|.+....... .| ..+..++..+... ++
T Consensus 133 ~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 212 (464)
T PRK06938 133 GPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVR 212 (464)
T ss_pred CCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHH
Confidence 4799999999955443222236788888888775433222 11 0123333311100 00
Q ss_pred cCHHHHHHHHhcCC---CCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh
Q 023599 174 LDFQGMLQDLGAAP---SGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV 249 (280)
Q Consensus 174 ~d~~~l~~~~~~~~---~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 249 (280)
.+.+.+++.+.+.. .+...|++..-.---|.+ .+.+-++++.++|++||+++|.||+...|.--. ..+. ....
T Consensus 213 ~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG--~~~a-~e~~ 289 (464)
T PRK06938 213 ANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG--KMFA-FEHA 289 (464)
T ss_pred HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc--HHHH-HHhc
Confidence 13567787776421 234455554333333554 468899999999999999999999998884321 1111 1122
Q ss_pred hcCCeEEEEecccccccccccccceEEEE
Q 023599 250 ADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 250 ~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+-.++++++ +|.++ .|+-+|.++..
T Consensus 290 gv~PDiv~~---gKglg-gG~PlsAv~~~ 314 (464)
T PRK06938 290 GIIPDVVVL---SKAIG-GSLPLAVVVYR 314 (464)
T ss_pred CCCCCEEEe---ecccc-CCCceEEEeeh
Confidence 333456644 89997 68888877753
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.5e-05 Score=68.22 Aligned_cols=216 Identities=11% Similarity=0.055 Sum_probs=112.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCC--CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEY--LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+...+|+..|.....-|+. .+..+++..+++. ......+ .......+|.+.+++.. .. ..+.+.+ +
T Consensus 38 dG~~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~--~~~~~~~~~~~~~~~~~lae~L~~~~----p~--~~~~v~f--~ 106 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHG-HPRLKAAAHKQID--TMSHVMFGGLTHEPAIKLTRKLLNLT----DN--GLDHVFY--S 106 (422)
T ss_pred CCCEEEEcchhHHHhcCCCC-CHHHHHHHHHHHH--hCCCcccCCcCCHHHHHHHHHHHhhC----CC--CcCEEEE--e
Confidence 45678999877431222321 2333444444443 1111111 11111234444444432 10 1257777 9
Q ss_pred ccchhHHHHHHHHHHhhc-----CC-CEEEEeCCCCCChHHHHHH-cCC-------------eeeEEEeecCCCCCcC--
Q 023599 118 LSGSGSLRIGADFLAKHY-----YQ-HTVYLSQPTYGNHPNFFAA-AGL-------------AMKTYHYYDPKTNGLD-- 175 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~-----~G-d~Vli~~P~y~~~~~~~~~-~G~-------------~~~~v~~~~~~~~~~d-- 175 (280)
++|++|.+.+..+..... +| .+|+...-+|.+....... .+- ....+|. +.....+
T Consensus 107 ~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~ 184 (422)
T PRK05630 107 DSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPA--PPVRGSSPQ 184 (422)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCC--CcccCCChH
Confidence 999999999855433221 23 5788888888764322221 110 1222332 1101111
Q ss_pred -----HHHHHHHHhcCCCCcEEEEecC-CCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh
Q 023599 176 -----FQGMLQDLGAAPSGAIVLLQAS-GHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF 248 (280)
Q Consensus 176 -----~~~l~~~~~~~~~~~~~v~~~~-p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 248 (280)
.+.+++.+.+ +...+++.. .+.-.|.. .+.+-++++.++|++||+++|.||++..+.... .... ...
T Consensus 185 ~~~~~~~~~~~~~~~---~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG--~~~a-~~~ 258 (422)
T PRK05630 185 EISEYLRSLELLIDE---TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTG--ELFA-TLA 258 (422)
T ss_pred HHHHHHHHHHHHHhh---ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCc--hhhH-HHh
Confidence 2334444432 334555543 25555664 567789999999999999999999997773321 1111 111
Q ss_pred hhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 249 VADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
.+..++++ +++|.++ .| .-+|.+++.
T Consensus 259 ~gv~PDi~---t~gK~l~-gG~~p~~av~~~ 285 (422)
T PRK05630 259 AGVTPDIM---CVGKALT-GGFMSFAATLCT 285 (422)
T ss_pred cCCCCCee---eeechhh-cCccccceeecc
Confidence 22233455 7799886 57 478877764
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=9e-05 Score=68.82 Aligned_cols=224 Identities=14% Similarity=0.047 Sum_probs=116.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...||+..|.....-|+- .+..++++.+++.+ ....... .....+.+..+++.+...-.. ..+.+.+ +++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~-~~~~~~~--~~~~~~~~~~lae~L~~~~p~--~~~~v~f--~~S 117 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFS-EQRLVEAAARQMKK-LPFYHTF--SHKSHGPVIDLAEKLVAMAPV--PMSKVFF--TNS 117 (460)
T ss_pred CCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHHh-CCCeecc--cccCCHHHHHHHHHHHHhCCC--CCCEEEE--eCC
Confidence 45678999877421222322 33344444444441 1111111 011122333344444322111 1256777 999
Q ss_pred chhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCCCCC-------
Q 023599 120 GSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPKTNG------- 173 (280)
Q Consensus 120 ~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~~------- 173 (280)
|++|.+++.++.... . +| .+|+...-+|.+........ |. .+..++..+...+.
T Consensus 118 GseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 197 (460)
T PRK06105 118 GSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEE 197 (460)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChH
Confidence 999999995443211 1 23 57888788886653222111 10 12222221000000
Q ss_pred ----cCHHHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 174 ----LDFQGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 174 ----~d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
...+.+++.+... .++...|++..-+.--|.. .+++-++++.++|++||+++|.||++..|.--. ..+...
T Consensus 198 ~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG--~~f~~~- 274 (460)
T PRK06105 198 AFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG--NMFGCE- 274 (460)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc--hhhhHH-
Confidence 0135677776432 3344566665445445655 578889999999999999999999997773311 111111
Q ss_pred hhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
..+..+++ -.++|.++ .| +-+|.++..
T Consensus 275 ~~~v~PDi---~~~gK~lg-gG~~P~~av~~~ 302 (460)
T PRK06105 275 TFGIKPDI---LVMSKQLS-SSYQPLSAVLMN 302 (460)
T ss_pred hcCCCCCe---eeeecccc-cCcccceEEEEc
Confidence 12222343 47799997 56 478877764
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00015 Score=67.10 Aligned_cols=223 Identities=11% Similarity=-0.015 Sum_probs=114.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...||+..|.....-|+ -.+..+++..+++. .. .+.+..... .+.+..+++.+...-. ...+.+.+ +++
T Consensus 29 dG~~ylD~~~g~~~~~lGh-~hp~v~~Ai~~ql~--~~-~~~~~~~~~-~~~~~~lae~L~~~~p--~~~~~v~f--~~s 99 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGH-GVKEIADAIKEQAE--EV-SFVYRSQFT-SEPAEKLAKKLSDLSP--GDLNWSFF--VNS 99 (447)
T ss_pred CCCEEEECchhHHhccCCC-CCHHHHHHHHHHHh--hC-cCccccccC-CHHHHHHHHHHHHhCC--CCCCEEEE--eCC
Confidence 4567899877743111222 12333344444443 11 111111111 1233444444433211 11245666 999
Q ss_pred chhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHHHHH-cCC------------eeeEEEeecCCCC--C-----
Q 023599 120 GSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNFFAA-AGL------------AMKTYHYYDPKTN--G----- 173 (280)
Q Consensus 120 ~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~~~~-~G~------------~~~~v~~~~~~~~--~----- 173 (280)
|++|.+.+.++.... .+| .+|+...-+|.+....... .|. .+..++....... .
T Consensus 100 GsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 179 (447)
T PRK06917 100 GSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPT 179 (447)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHH
Confidence 999999995443221 133 5788888888775433222 111 1111221000000 0
Q ss_pred ---cCHHHHHHHHhcCC-CCcEEEEecCCC-CCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 174 ---LDFQGMLQDLGAAP-SGAIVLLQASGH-NPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 174 ---~d~~~l~~~~~~~~-~~~~~v~~~~p~-NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
-+.+.+++.+.... ++...|++..-. |--|. ..+.+-+++|.++|++||+++|.||+...|.--. .... ..
T Consensus 180 ~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG--~~~a-~~ 256 (447)
T PRK06917 180 CQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG--AMFA-ME 256 (447)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCccc--chhh-HH
Confidence 12456777776432 234455554323 22333 4578889999999999999999999998763211 1111 11
Q ss_pred hhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
..+..++++ +|+|.++ .|+ -+|.+++.
T Consensus 257 ~~gv~PDi~---~~gK~l~-~G~~Pi~a~~~~ 284 (447)
T PRK06917 257 HWGVEPDIM---TLGKGLG-AGYTPIAATVVS 284 (447)
T ss_pred hcCCCCCEE---Eeeehhc-cCCcceEEEEEc
Confidence 123233543 6699997 675 77877654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.9e-05 Score=72.32 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=73.0
Q ss_pred EEEEeCCCCCChHHHHHHcCC---eeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHH
Q 023599 139 TVYLSQPTYGNHPNFFAAAGL---AMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWE 212 (280)
Q Consensus 139 ~Vli~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~ 212 (280)
+|+++.-.+..+...+..+|+ .++.||. ++++.+|++.|++.+.+. ...+.+|+-+-.+..+|.+=+.+++.
T Consensus 224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~Vpv--D~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~ 301 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPV--DSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIV 301 (608)
T ss_pred EEEECCCccHHHHHHHHHcCCCcccEEEeec--CCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHH
Confidence 577777767777888888888 5889998 346789999999998642 23345677777888999877777666
Q ss_pred HHHHHHHhCCc--eeEEcccCCCcc
Q 023599 213 QIRQLMRLKRL--LPFFDCAYQGFV 235 (280)
Q Consensus 213 ~i~~~~~~~~~--~ii~De~y~~~~ 235 (280)
+|++-++++|+ |+.+|.+|+.+.
T Consensus 302 ~l~~~~~~~gl~~~lHVDAAyGG~~ 326 (608)
T TIGR03811 302 ALRNKLMKEGIYFYLHVDAAYGGYG 326 (608)
T ss_pred HHHHHHHHcCCceeEeeeccccchh
Confidence 66666688897 699999999863
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00022 Score=66.36 Aligned_cols=161 Identities=14% Similarity=0.177 Sum_probs=91.9
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+.++.... . +| .+|+...-+|.+........ |- .+..++..+..
T Consensus 113 ~~v~f--~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (466)
T PRK07036 113 NHVFL--TTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPY 190 (466)
T ss_pred CEEEE--eCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccc
Confidence 56777 999999999995543222 1 23 57888888887754332221 10 12223221100
Q ss_pred --CCCcC--------HHHHHHHHhc-CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 171 --TNGLD--------FQGMLQDLGA-APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 171 --~~~~d--------~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
..+.. .+.+++.+.. .+.+...|++.....-.|.. .+++-++++.++|++||+++|.||+...|.--.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG 270 (466)
T PRK07036 191 RRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG 270 (466)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc
Confidence 01111 2345555543 23444566655544445654 567888999999999999999999997773211
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
.........+..++++ .++|.++ .| +-+|.+++.
T Consensus 271 --~~~~~~~~~gv~PDiv---t~gK~l~-gG~~Pi~av~~~ 305 (466)
T PRK07036 271 --HFFASEAVFGIQPDII---TFAKGLT-SGYQPLGAVIIS 305 (466)
T ss_pred --hhhhhhhhcCCCCCEE---EEccccc-cCccccEEEEEc
Confidence 1111111112233444 5699997 67 478877764
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00013 Score=73.84 Aligned_cols=161 Identities=15% Similarity=0.054 Sum_probs=90.2
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-C-----C--------eeeEEEeecCC--CCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-G-----L--------AMKTYHYYDPK--TNG 173 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G-----~--------~~~~v~~~~~~--~~~ 173 (280)
+.+.+ +++|++|.+.+.++........+|+..+-+|.+........ + . .+..++..+.. .+.
T Consensus 642 ~~v~f--~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~ 719 (972)
T PRK06149 642 DTVFL--VNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFR 719 (972)
T ss_pred CEEEE--eCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCC
Confidence 56777 99999999999544333333367888888887543221100 0 0 01222220000 011
Q ss_pred -cC-----HHHHHHHHh---cCCCCcEEEEecC-CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 174 -LD-----FQGMLQDLG---AAPSGAIVLLQAS-GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 174 -~d-----~~~l~~~~~---~~~~~~~~v~~~~-p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
.+ .+.+++.++ +...+.++|++.. ..+--....+++-++++.++|++||+++|.||+...|.--. +..+
T Consensus 720 ~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG-~~~~ 798 (972)
T PRK06149 720 GADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG-HYFW 798 (972)
T ss_pred CcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccC-ccch
Confidence 11 234343332 2223344455443 33433355678889999999999999999999997664321 1111
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.... .+....++ +++|.+| .|+-+|.+++.
T Consensus 799 a~e~-~gv~PDiv---t~gK~lg-~G~Pl~av~~~ 828 (972)
T PRK06149 799 GFEQ-QGVVPDII---TMAKGMG-NGHPLGAVITR 828 (972)
T ss_pred hhhh-cCCCCCEE---Eeccccc-CCeeeEEEEEc
Confidence 1111 12234555 7799998 78888988764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00022 Score=66.88 Aligned_cols=225 Identities=15% Similarity=0.039 Sum_probs=116.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...|||..|.....-|+ -.+..++++.+++.+ -.....+ ..+..+....+++.+...... ...+.+.+ +++
T Consensus 87 dG~~ylD~~sg~~~~~lGh-~hp~v~~Av~~ql~~-~~~~~~~--~~~~~~~~~~lae~L~~~~~~-~~~~~v~f--~~S 159 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGG-SEPRLVAAATEQLNK-LPFYHSF--WNRTTKPSLDLAKELLEMFTA-RKMGKVFF--TNS 159 (504)
T ss_pred CCCEEEEcCcCHHhcccCC-CCHHHHHHHHHHHhh-ccceecc--cccCcHHHHHHHHHHHhhcCC-CCCCEEEE--eCC
Confidence 3567899887642122232 233444444444441 1111111 112234445555554332110 11245666 999
Q ss_pred chhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHHHHH-cCCe------------eeEEEeecCCCC----C---
Q 023599 120 GSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNFFAA-AGLA------------MKTYHYYDPKTN----G--- 173 (280)
Q Consensus 120 ~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~~~~-~G~~------------~~~v~~~~~~~~----~--- 173 (280)
|++|.+.+..+.... .+| .+|+..+-+|.+....... .|.. +..++..+...+ .
T Consensus 160 GsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 239 (504)
T PLN02760 160 GSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEE 239 (504)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHH
Confidence 999999994443211 133 5788888888766332211 2211 112221000000 0
Q ss_pred ----cCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 174 ----LDFQGMLQDLGA-APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 174 ----~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
...+.+++.+.+ .+++.++|++..-..--|.+ .+.+-+++|.++|++||+++|.||++..|.--. .... ..
T Consensus 240 ~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG--~~~a-~e 316 (504)
T PLN02760 240 EFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG--TMFG-CD 316 (504)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc--hhhH-HH
Confidence 012456666643 22334556655444444654 467889999999999999999999997773311 1111 11
Q ss_pred hhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
..+..++ |.+|+|.++ .| +-+|.+++.
T Consensus 317 ~~gv~PD---ivtlgK~lg-gG~~PigAv~~~ 344 (504)
T PLN02760 317 KYNIKPD---LVSLAKALS-SAYMPIGAVLVS 344 (504)
T ss_pred hcCCCCc---EEEeccccc-CCccccceEeec
Confidence 1122234 567799997 56 478877654
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00017 Score=66.68 Aligned_cols=160 Identities=13% Similarity=0.036 Sum_probs=91.3
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHHc-C------------CeeeEEEeec-C
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAAA-G------------LAMKTYHYYD-P 169 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~~-G------------~~~~~v~~~~-~ 169 (280)
+.+.+ +++|++|.+.+..+.... . ++ .+|+...-+|.+........ | ..+..+|... .
T Consensus 110 ~~v~f--~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (445)
T PRK09221 110 DHVFF--TNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDL 187 (445)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccc
Confidence 57777 999999999985443322 1 22 57888888887653221111 1 1122233210 0
Q ss_pred C--CCCc--------CHHHHHHHHhcC-CCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 170 K--TNGL--------DFQGMLQDLGAA-PSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 170 ~--~~~~--------d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
. .+.. ..+.+++.+... .++..+|++..-..-.|... +.+-+++|.++|++||+++|.||+...|.--
T Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt 267 (445)
T PRK09221 188 PENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRL 267 (445)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcC
Confidence 0 0110 135677777543 23445666655555556644 5667899999999999999999999766321
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
. ....... .+..++ +-+++|.++ .| +-+|.+++.
T Consensus 268 G--~~~~~~~-~gv~PD---i~~~gK~l~-gG~~Pi~av~~~ 302 (445)
T PRK09221 268 G--AAFAAER-FGVTPD---IITFAKGLT-NGAIPMGAVIAS 302 (445)
T ss_pred c--hhhHHHh-cCCCCC---EEEeccccc-cCcccceeeEEc
Confidence 1 1111111 122223 447899997 45 567776553
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00026 Score=65.39 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=113.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|.....-|+ -.+..+++..+++. ........ ... .+....+++.+...-. ...+.+.+ +++
T Consensus 28 dG~~ylD~~~g~~~~~lGh-~~p~v~~av~~ql~--~~~~~~~~-~~~-~~~~~~lae~L~~~~p--~~~~~v~f--~~s 98 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGH-SHPRVIAAIHAQID--RLAYAHTS-FFT-TEPAEALADRLVAAAP--AGLEHVYF--VSG 98 (443)
T ss_pred CCCEEEEcCccHhhhccCC-CCHHHHHHHHHHHH--hccCcccc-ccC-CHHHHHHHHHHHHhCC--CCCCEEEE--cCC
Confidence 4567899987743122222 12333344444443 11100100 011 2233445555433211 01257777 999
Q ss_pred chhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHHHHH-cCC------------eeeEEEeecCCCC---Cc---
Q 023599 120 GSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNFFAA-AGL------------AMKTYHYYDPKTN---GL--- 174 (280)
Q Consensus 120 ~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~~~~-~G~------------~~~~v~~~~~~~~---~~--- 174 (280)
|++|.+.+..+.... .+| .+|+...-+|.+....... .|- .+..++....... ..
T Consensus 99 GsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 178 (443)
T PRK07483 99 GSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDE 178 (443)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHH
Confidence 999999995544333 134 4688878888665322211 110 1122221000000 00
Q ss_pred -----CHHHHHHHHhc-CCCCcEEEEecCCCC-CCC-CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 175 -----DFQGMLQDLGA-APSGAIVLLQASGHN-PTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 175 -----d~~~l~~~~~~-~~~~~~~v~~~~p~N-PTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
..+.+++.+.. ...+...|++..-+- --| ...+.+-++++.++|++||+++|.||+...|.--. ..+...
T Consensus 179 ~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG--~~~a~~ 256 (443)
T PRK07483 179 AYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG--TLFACE 256 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc--HHHHHh
Confidence 02566665543 223344555543321 124 35678889999999999999999999998774321 111111
Q ss_pred HhhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
..+..+++++ ++|.++ .|+ -+|.+++.
T Consensus 257 -~~gv~PDiv~---~gK~l~-gG~~Pi~av~~~ 284 (443)
T PRK07483 257 -EDGVAPDLVT---IAKGLG-AGYQPIGAVLAS 284 (443)
T ss_pred -hcCCCCCeee---ehhhhc-cCccccEEEEEc
Confidence 1233345554 499997 685 78877764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00028 Score=65.37 Aligned_cols=160 Identities=15% Similarity=0.094 Sum_probs=90.6
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHHHHHHc-C------------CeeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPNFFAAA-G------------LAMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~~~~~~-G------------~~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+.++.... .+| .+|+...-+|.+........ | ..+..++..+..
T Consensus 105 ~~v~f--~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~ 182 (449)
T PRK07481 105 RRVFF--SSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLY 182 (449)
T ss_pred CEEEE--cCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCccc
Confidence 56777 999999999995543322 134 57888888887753322111 1 012222220000
Q ss_pred --CCC-cCHHHH--------HHHHh-cCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 171 --TNG-LDFQGM--------LQDLG-AAPSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 171 --~~~-~d~~~l--------~~~~~-~~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
.+. .|.+.+ ++.+. ..+++..+|++..-+.-.|.. .+.+-++++.++|++||+++|.||+...|.--
T Consensus 183 ~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRt 262 (449)
T PRK07481 183 RNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRT 262 (449)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcC
Confidence 011 133333 34343 223344566655444444654 56777999999999999999999999877432
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
. .... ....+..+++++ ++|.++ .| +-+|.+++.
T Consensus 263 G--~~~a-~~~~gv~PDiv~---~gKgl~-gG~~Pi~av~~~ 297 (449)
T PRK07481 263 G--SWFG-SRGWGVKPDIMC---LAKGIT-SGYVPLGATMVN 297 (449)
T ss_pred c--hhhH-hhhcCCCCCEEE---Eeeccc-CCCcCceEEEEc
Confidence 1 1111 112233345554 499987 57 478877664
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00047 Score=64.01 Aligned_cols=225 Identities=12% Similarity=0.093 Sum_probs=112.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...||+..|.....-|+ -.++.+++..+++. ........ .-..+.+..+++.+...-........+.+ .+++
T Consensus 56 dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~q~~--~~~~~~~~--~~~~~~~~~lAe~L~~~~p~~~~~~~~~f-~~~S 129 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGH-NHPDVLQSIQDVLT--SGLPLHTL--DLTTPLKDAFSEYLLSLLPGQGKEYCLQF-TGPS 129 (459)
T ss_pred CCCEEEEcccchhhccCCC-CCHHHHHHHHHHHh--hhcccccc--ccCCHHHHHHHHHHHHhCCCccccceEEE-eCCC
Confidence 4567899987753121232 12334444444443 21111110 01123444555554332110000012322 2689
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-C------------CeeeEEEeecCCC--CC----cCHHHH-
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-G------------LAMKTYHYYDPKT--NG----LDFQGM- 179 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G------------~~~~~v~~~~~~~--~~----~d~~~l- 179 (280)
|++|.+.+.++.......++|+...-+|.+........ | ..+..+|..+... +. -+.+.+
T Consensus 130 GsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (459)
T PRK06931 130 GADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALT 209 (459)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHH
Confidence 99999999554433333467888888887765443321 1 1122333211000 00 122322
Q ss_pred ---HHHHhc---CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcC
Q 023599 180 ---LQDLGA---APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADG 252 (280)
Q Consensus 180 ---~~~~~~---~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 252 (280)
++.+.+ ...+...+++..-.--.|.. .+.+-++++.++|++||+++|.||+...|.--. ..+... ..+..
T Consensus 210 ~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG--~~~a~~-~~gv~ 286 (459)
T PRK06931 210 YYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG--KMFAFE-HAGIE 286 (459)
T ss_pred HHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc--hHHHhh-hcCCC
Confidence 333321 12234455554333333543 578889999999999999999999998874321 111111 12333
Q ss_pred CeEEEEecccccccccccccceEEE
Q 023599 253 GECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 253 ~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
++++ .++|.++ .|+-+|.++.
T Consensus 287 PDiv---t~gK~l~-gG~Pi~av~~ 307 (459)
T PRK06931 287 PDII---VMSKAVG-GGLPLAVLGI 307 (459)
T ss_pred CCEE---Eeccccc-CCcceeeeee
Confidence 4555 4499998 6888886543
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00026 Score=65.70 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=89.5
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh----c-CC-CEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH----Y-YQ-HTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPK 170 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~----~-~G-d~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~ 170 (280)
+.+.+ +++|++|.+.+..+.... . +| .+|+...-+|.+........ |. .+..++. +.
T Consensus 112 ~~v~f--~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~--p~ 187 (456)
T PRK07480 112 NHVFF--TNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQ--PY 187 (456)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCC--Cc
Confidence 57777 999999999995443322 1 33 46887777886643211111 11 0111221 00
Q ss_pred CC----CcC--------HHHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 171 TN----GLD--------FQGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 171 ~~----~~d--------~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
.+ ..+ .+.+++.+.+. ..+...|++...+.--|.. .+.+-+++|.++|++||+++|.||++..|.-
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGR 267 (456)
T PRK07480 188 WFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGR 267 (456)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 00 001 25565555432 3344566665544445664 4566699999999999999999999987733
Q ss_pred CcCCChhHHHHhhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 237 NMDADALPVRMFVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
-. ...... ..+..++++ .|+|.++ .|+ -+|.+++.
T Consensus 268 tG--~~~a~~-~~gv~PDiv---~~gK~l~-gG~~Pi~av~~~ 303 (456)
T PRK07480 268 TG--EWFGSQ-HFGIKPDLM---TIAKGLT-SGYIPMGAVGVG 303 (456)
T ss_pred Cc--chhhhh-hcCCCCCee---eeehhhc-cCCccceEEEEc
Confidence 11 111111 123233444 5699987 574 78877764
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00045 Score=70.13 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=90.5
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-c--------C----CeeeEEEeecC--CCCCc
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-A--------G----LAMKTYHYYDP--KTNGL 174 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~--------G----~~~~~v~~~~~--~~~~~ 174 (280)
+.+.+ +++|++|.+++.++........+|+...-+|.+....... . + ..+..++..+. ..+..
T Consensus 681 ~~v~f--~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 758 (1013)
T PRK06148 681 TVAFF--VNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERW 758 (1013)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCC
Confidence 55666 9999999999955543333346788888888665322111 1 1 01111111000 00110
Q ss_pred -C-------HHHHHHHHh---cCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 175 -D-------FQGMLQDLG---AAPSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 175 -d-------~~~l~~~~~---~~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
+ .+.+++.+. ....+.+.|++..-.---|. ..+++-++++.++|+++|+++|.||+...|.--.. ..
T Consensus 759 ~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~-~~ 837 (1013)
T PRK06148 759 PDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGS-HW 837 (1013)
T ss_pred ChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCC-cc
Confidence 1 134555443 22233445555433322343 55788899999999999999999999987743110 01
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.... .+..+.+ -+++|.+| .|+-+|.+++.
T Consensus 838 ~a~e~-~gv~PDi---vt~gK~lg-gG~Plgav~~~ 868 (1013)
T PRK06148 838 WAFET-QGVVPDI---VTMGKPIG-NGHPMGAVVTT 868 (1013)
T ss_pred hhhhh-cCCCcce---eeeccccc-CCcceEEEEEc
Confidence 11111 1223344 45699998 78989988764
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.4e-05 Score=64.28 Aligned_cols=203 Identities=14% Similarity=0.014 Sum_probs=118.3
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhcc-CCCCCCCCCCCCC----HHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND-LSADKEYLPITGL----PEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~G~----~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
..+++|...+| -|+..-++.+.+..+.+..- .+ ..+-.-..|. ..|...||++..+ |+.++
T Consensus 67 k~ilnFcaNnY---LGLsshPeii~a~~~aleeyGaG-lssvrfIcGtq~iHk~LE~kiAqfh~r--------ED~il-- 132 (417)
T KOG1359|consen 67 KKILNFCANNY---LGLSSHPEIINAGQKALEEYGAG-LSSVRFICGTQDIHKLLESKIAQFHGR--------EDTIL-- 132 (417)
T ss_pred cceeeeccccc---ccccCChHHHHHHHHHHHHhCCC-ccceeEEecchHHHHHHHHHHHHHhCC--------CceEE--
Confidence 56889988777 55555555555544444310 11 0110012333 4566777777422 44455
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC-CcEEEEe
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS-GAIVLLQ 195 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~-~~~~v~~ 195 (280)
.+.+-.|...+ +-+++.|-|.|+--...+-...+-.+.. . .-..+|+-.++..+.++.+ +.++|+.
T Consensus 133 ypscfdANag~--feail~pedAvfSDeLNhASIIdGirLc-----k------ry~h~dv~~l~~~l~~a~k~r~klv~T 199 (417)
T KOG1359|consen 133 YPSCFDANAGA--FEAILTPEDAVFSDELNHASIIDGIRLC-----K------RYRHVDVFDLEHCLISACKMRLKLVVT 199 (417)
T ss_pred eccccccchHH--HHHhcChhhhhhccccccchhhhhhHHH-----h------hhccchhHHHHHHHHHhhhheEEEEEe
Confidence 77777777777 6777778777776554443332222211 1 1113567777776665432 2235554
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEecccccccccccccce
Q 023599 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMGLYGERVGA 274 (280)
Q Consensus 196 ~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RvG~ 274 (280)
..--.=-|.+.+ +++|++++++||.++++||++..+.+.... .- ...... +++-.|..++++|.+| |---||
T Consensus 200 Dg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tG-rG-t~E~~~vm~~vdiinsTLgKAlG--ga~GGy 272 (417)
T KOG1359|consen 200 DGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETG-RG-TAEEFGVMGDVDIINSTLGKALG--GASGGY 272 (417)
T ss_pred cceeccCCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCC-CC-hHHHhCCCCcceehhhhhhhhhc--CCCCCC
Confidence 444455666665 566789999999999999999999884211 10 112212 3455677899999987 666777
Q ss_pred EEEE
Q 023599 275 LSVV 278 (280)
Q Consensus 275 ~v~~ 278 (280)
..++
T Consensus 273 ttgp 276 (417)
T KOG1359|consen 273 TTGP 276 (417)
T ss_pred ccCC
Confidence 7665
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00079 Score=59.78 Aligned_cols=221 Identities=13% Similarity=0.085 Sum_probs=124.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCC--CHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITG--LPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G--~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+.+.||+..+......++. .++..+++.+... . ..+...+..- .-++.+.+.+.+. +. ..+.|.+ +
T Consensus 54 ~g~EyiD~~ssw~~~~~Gha-npev~ral~~q~~--k-~~hs~~~~~t~eav~l~~~l~~~~~-~~----~~~rvff--~ 122 (433)
T KOG1401|consen 54 DGKEYIDFTSSWAVTILGHA-NPEVARALAEQAK--K-LGHSSNGYFTLEAVELEEVLSAVLG-KG----SAERVFF--C 122 (433)
T ss_pred CcceeeeeccceeccccCCC-CHHHHHHHHHHHh--h-heeccCccccHHHHHHHHHHHhccc-CC----CccEEEE--e
Confidence 45678999888643333433 3344444444433 1 1122222222 2234444444431 11 3588888 9
Q ss_pred ccchhHHHHHHHHHHhhc-CC---C--EEEEeCCCCCCh-HHHHHHcCCeeeEEEee--cCC--C-CCcCHHHHHHHHhc
Q 023599 118 LSGSGSLRIGADFLAKHY-YQ---H--TVYLSQPTYGNH-PNFFAAAGLAMKTYHYY--DPK--T-NGLDFQGMLQDLGA 185 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~-~G---d--~Vli~~P~y~~~-~~~~~~~G~~~~~v~~~--~~~--~-~~~d~~~l~~~~~~ 185 (280)
++|++|.+.+..+..... .+ + +|+...-+|.+- ...+...+......|.. -++ + ..-|..++++.++.
T Consensus 123 nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~ 202 (433)
T KOG1401|consen 123 NSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFES 202 (433)
T ss_pred cCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHh
Confidence 999999999943332211 11 1 366666777543 33333222222222110 011 0 12368999999998
Q ss_pred CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 186 APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
+.....+|++.--+=--|.. ..++.+..|.+.|+++++++|.||+...|.--. .-+. ..+....++ |.++.|.
T Consensus 203 h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g--~~~a-~e~~~~~PD---I~t~aK~ 276 (433)
T KOG1401|consen 203 HKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG--YGWA-QEYFGVTPD---ITTVAKP 276 (433)
T ss_pred CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccc--hHHH-HHHhCcCCc---ceeehhh
Confidence 86555667765544333433 457788999999999999999999998875421 1111 222223233 4567899
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
++ -|+-+|..++.
T Consensus 277 L~-gGlPigA~~v~ 289 (433)
T KOG1401|consen 277 LG-GGLPIGATGVR 289 (433)
T ss_pred cc-CCceeEEEeeh
Confidence 98 78999977664
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00081 Score=61.99 Aligned_cols=125 Identities=9% Similarity=0.062 Sum_probs=76.8
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhc------C------CCEEEEeCCCCCChHHHHHH-cCCe-e--eEEEe-------
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHY------Y------QHTVYLSQPTYGNHPNFFAA-AGLA-M--KTYHY------- 166 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~------~------Gd~Vli~~P~y~~~~~~~~~-~G~~-~--~~v~~------- 166 (280)
+.+.+ +++|++|++.+..+..... . +.+|+...-+|.+....... .|.. . ...+.
T Consensus 104 ~~v~f--~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~ 181 (431)
T TIGR03251 104 PHLFF--IEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRID 181 (431)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCC
Confidence 56777 9999999999955443221 1 36788888888765433322 2211 0 00010
Q ss_pred ---e----cCCCCC-------cCHHHHHHHHhcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccC
Q 023599 167 ---Y----DPKTNG-------LDFQGMLQDLGAAPSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAY 231 (280)
Q Consensus 167 ---~----~~~~~~-------~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y 231 (280)
. +.+... -+++.+++.+.....+...+++.....-.|.. .+++-+++|.++|++||+++|.||++
T Consensus 182 ~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~ 261 (431)
T TIGR03251 182 NPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQ 261 (431)
T ss_pred CCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch
Confidence 0 000000 12455566665444455666666555555654 57889999999999999999999999
Q ss_pred CCccc
Q 023599 232 QGFVM 236 (280)
Q Consensus 232 ~~~~~ 236 (280)
..|..
T Consensus 262 tG~Gr 266 (431)
T TIGR03251 262 TGVGL 266 (431)
T ss_pred hccCc
Confidence 87754
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=60.89 Aligned_cols=149 Identities=8% Similarity=0.035 Sum_probs=85.5
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh--------c---CC-CEEEEeCCCCCChHHHHHH-cCCee-----------eEEE
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH--------Y---YQ-HTVYLSQPTYGNHPNFFAA-AGLAM-----------KTYH 165 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~--------~---~G-d~Vli~~P~y~~~~~~~~~-~G~~~-----------~~v~ 165 (280)
+.+.+ +++|++|.+.+..+.... . +| .+|+...-+|.+....... .|... ..++
T Consensus 111 ~~v~f--~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~ 188 (443)
T PRK08297 111 PHLFF--VDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRID 188 (443)
T ss_pred CEEEE--eCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccC
Confidence 67777 999999999995544221 1 12 5788888888776433332 22110 0011
Q ss_pred eec------CCC-C------CcCHHHHHHHHhcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccC
Q 023599 166 YYD------PKT-N------GLDFQGMLQDLGAAPSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAY 231 (280)
Q Consensus 166 ~~~------~~~-~------~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y 231 (280)
... ..+ . .-+++.+++.+.+.+.+...+++..-.---|. ..+++-+++|.++|++||+++|.||++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~ 268 (443)
T PRK08297 189 NPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQ 268 (443)
T ss_pred CCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 000 000 0 01245566777655445556665543333344 377899999999999999999999999
Q ss_pred CCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 232 QGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
..|.... ..+. ....+..+.++ .|+|.++
T Consensus 269 tGfGRtG--~~~a-~~~~gv~PDiv---~~gK~l~ 297 (443)
T PRK08297 269 TGVGLTG--TAWA-YQQLGVRPDIV---AFGKKTQ 297 (443)
T ss_pred hccCccc--hHHH-HHhcCCCCCEE---Eeccccc
Confidence 8874421 1111 11123234555 3688775
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00041 Score=69.51 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcC--CCEEEEeCCCCCChHHHH----HHcCCee
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYY--QHTVYLSQPTYGNHPNFF----AAAGLAM 161 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~--Gd~Vli~~P~y~~~~~~~----~~~G~~~ 161 (280)
.++++.++++. +. ...|+.+ ..+++.+.+.+ +.++ ..+ +++|++++-.|+.+..++ +..|+++
T Consensus 124 ~~~Qt~la~Lt-G~-----~~anaSl--~d~aTAa~ea~--~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev 193 (954)
T PRK05367 124 LNFQTMVADLT-GL-----EIANASL--LDEATAAAEAM--ALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEV 193 (954)
T ss_pred HHHHHHHHHHH-CC-----Chhhccc--cccHHHHHHHH--HHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEE
Confidence 34667777764 33 2477787 99999999988 4443 344 489999999998877665 4579999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.++. +. |.+ . .+...+++.+| |-+|.+.+ +++|+++|+++|+++++|.....+..-
T Consensus 194 ~~~~~-~~-----d~~-------~--~~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l---- 250 (954)
T PRK05367 194 VVGDA-AK-----ALD-------H--DDVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTLL---- 250 (954)
T ss_pred EEecC-cc-----CCC-------c--ccEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCC----
Confidence 99987 22 111 1 12234444444 78998874 778899999999999998643222221
Q ss_pred hhHHHHhhhcCCeEEEEeccccc-----ccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKT-----MGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~-----~~~~G~RvG~~v~~ 278 (280)
....+.+..++ ++|.-|. ||-|| .|++.+.
T Consensus 251 ----~~pge~GaDi~-vgs~qkfg~P~g~GGP~--aGflavr 285 (954)
T PRK05367 251 ----TPPGEMGADIA-VGSAQRFGVPMGFGGPH--AAYFAVR 285 (954)
T ss_pred ----CChhhcCCCEE-EeeCcccCCCCCCCCCC--EEEEEEC
Confidence 01122333444 4555565 65554 7777764
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.5e-05 Score=66.53 Aligned_cols=145 Identities=10% Similarity=-0.044 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeec-ccchhHHHHHHHHHHhhcCCCEEEEeCCCCC-ChHHHHHH--cCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQC-LSGSGSLRIGADFLAKHYYQHTVYLSQPTYG-NHPNFFAA--AGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t-~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~-~~~~~~~~--~G~~~~~ 163 (280)
..+.|+.+++++.... +++|++ + .+||.+++++ +.+++.+ +.+.+..-.|. .+...+.. .+.++..
T Consensus 43 ~~~~r~~l~~l~~~~~-----~~~v~f--~~gs~T~a~~~~--~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~ 112 (361)
T TIGR01366 43 VGRVREGLAELFSLPD-----GYEVIL--GNGGATAFWDAA--TFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPII 112 (361)
T ss_pred HHHHHHHHHHHhCCCC-----CceEEE--ECCchhHHHHHH--HHhcccc-cccEEecCHHHHHHHHHHHhhhccCCceE
Confidence 4567888888864321 246665 5 5599999999 7776543 33344333342 23334443 2336677
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++. +++..++. .+.++++ +|++++..|.||...+.+++ ++++|+++|+|.+-.-....- +.
T Consensus 113 ~~~--~~~~~~~~-----~~~~~~~---lV~~~h~et~tG~~~pi~~I------~~~~g~~~iVDavqs~g~~~i--dv- 173 (361)
T TIGR01366 113 VTA--DPGSAPEP-----QADPGVD---VIAWAHNETSTGVAVPVRRP------EGSDDALVVIDATSGAGGLPV--DI- 173 (361)
T ss_pred Eec--CCCCCCCC-----ccCCCCC---EEEEcccCCccceecccccc------cccCCCeEEEEcCccccCCCC--CH-
Confidence 765 22223332 2333334 88889999999999986654 478999999999876554432 11
Q ss_pred HHHHhhhcCCeEEEEecccccccccc
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G 269 (280)
.. .+ +++.|--|.+|.+|
T Consensus 174 --~~-----~D-~~~~s~~K~lg~~~ 191 (361)
T TIGR01366 174 --AE-----TD-VYYFAPQKNFASDG 191 (361)
T ss_pred --HH-----CC-EEEEEchhhcCCCC
Confidence 11 13 36789999998774
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=64.86 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHH-HHHhhc--CC---CEEEEeCCCCCChHHHHHHcCC
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGAD-FLAKHY--YQ---HTVYLSQPTYGNHPNFFAAAGL 159 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~-~~~~~~--~G---d~Vli~~P~y~~~~~~~~~~G~ 159 (280)
++...+..+...++......+ ++.+- ..|.|+++++.++-. ...... .| ..++++.-....+....+..+.
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~--~~~~g-~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v 192 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAP--SDSCG-CGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEV 192 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCC--ccccC-ccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEE
Confidence 455566666655533222221 23332 349999999554411 111111 23 3455555555666777777889
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh-CCceeEEcccCCCccc
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL-KRLLPFFDCAYQGFVM 236 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~-~~~~ii~De~y~~~~~ 236 (280)
++..+++ ++.++.+|+..+.+.+.+++. .++..-|+-|+|. .+++++|.+++.+ +++.+-+|.+-+.|+-
T Consensus 193 ~l~~V~~-~~~~~~~D~~k~~~~i~eNti---~lv~~~~~~p~G~---~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~ 263 (491)
T KOG1383|consen 193 ELREVPL-DEGDYRVDPGKVVRMIDENTI---MLVGSLPNFPTGE---IEDVEKLADLLLEIWDIPIHVDACLGGFIN 263 (491)
T ss_pred EEEeeec-cccceEecHHHHHHHhccceE---EEEEEcCCCCccc---hhhHHHHHHHHHHHhCCceeecccCccccc
Confidence 9999999 678899999999999998765 7888889999995 5778889999988 9999999999988875
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.003 Score=58.67 Aligned_cols=125 Identities=8% Similarity=-0.012 Sum_probs=77.8
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-c-----------------------CC---CEEEEeCCCCCChHHHHHH-cCC--
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-Y-----------------------YQ---HTVYLSQPTYGNHPNFFAA-AGL-- 159 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-~-----------------------~G---d~Vli~~P~y~~~~~~~~~-~G~-- 159 (280)
+.+.+ +++|++|.+.+..+.... . +| .+|+...-+|.+....... .|-
T Consensus 123 ~~v~f--~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~ 200 (464)
T TIGR00699 123 DQVWT--GMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKP 200 (464)
T ss_pred CEEEE--eCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCcc
Confidence 56777 999999999995544221 0 12 2688888889765433222 121
Q ss_pred ---------eeeEEEeecCC-CC-----------CcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHH
Q 023599 160 ---------AMKTYHYYDPK-TN-----------GLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQL 217 (280)
Q Consensus 160 ---------~~~~v~~~~~~-~~-----------~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~ 217 (280)
.+..+|..+.. .+ .-+++.+++.+.+...+...|++..-..-.|... +.+-+++|.++
T Consensus 201 ~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~l 280 (464)
T TIGR00699 201 IHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDI 280 (464)
T ss_pred ccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHH
Confidence 11112210000 00 0135667777765434455666665555567666 68889999999
Q ss_pred HHhCCceeEEcccCCCccc
Q 023599 218 MRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 218 ~~~~~~~ii~De~y~~~~~ 236 (280)
|++||+++|.||+...|..
T Consensus 281 c~~~g~lLI~DEV~tGfGr 299 (464)
T TIGR00699 281 TKKHNVAFIVDEVQTGVGA 299 (464)
T ss_pred HHHcCCEEEEeeeeeCCCC
Confidence 9999999999999977743
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=97.64 E-value=2.9e-05 Score=68.45 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=33.0
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCC---C---CChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPT---Y---GNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~---y---~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
+..++ +++...|+.++ +- .+.+|.+|+++.-. + +...++++..|+++++|-.. .....+++++++
T Consensus 63 eaA~V--vNnnaAAv~L~--l~-~la~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt----N~t~~~Dye~AI 133 (367)
T PF03841_consen 63 EAALV--VNNNAAAVLLA--LN-TLAKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT----NRTHLSDYEKAI 133 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccc--cc-ccccccccccccccccccccccccccccccccccccccccc----cccccccccccc
Confidence 55555 77777777776 33 34577788877532 2 23567778889999999863 245688889999
Q ss_pred hcCCCCcEEEEecCCCCCC--CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC---cCCChhHHHHhhhcCCeEEEE
Q 023599 184 GAAPSGAIVLLQASGHNPT--GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN---MDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPT--G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~---~~~~~~~~~~~~~~~~~~i~~ 258 (280)
.+++. +++--+++|-. |..-.. .++++++++++|++++++|-.-+.+..- .-...+.++.+...+..+ ++
T Consensus 134 ~e~Ta---~ll~Vh~Sn~~i~GFt~~~-~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDl-V~ 208 (367)
T PF03841_consen 134 TENTA---ALLKVHTSNFRIQGFTGEV-SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADL-VT 208 (367)
T ss_dssp -------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SE-EE
T ss_pred ccccc---ccccccccccccccccccc-cHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCE-EE
Confidence 88865 55555566663 322222 4788899999999999999976443320 001122334444444444 47
Q ss_pred ecccccccccccccceEEE
Q 023599 259 QSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~ 277 (280)
.|=-|.+| |=..|.++.
T Consensus 209 fSGdKlLG--GPQaGiI~G 225 (367)
T PF03841_consen 209 FSGDKLLG--GPQAGIIVG 225 (367)
T ss_dssp EETTSSSS--S-S-EEEEE
T ss_pred EECCCcCC--CCCeEEEEe
Confidence 88899997 456787764
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0019 Score=56.56 Aligned_cols=141 Identities=9% Similarity=0.097 Sum_probs=99.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc-----CCCEEEEeC-CCCCChHH
Q 023599 79 DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY-----YQHTVYLSQ-PTYGNHPN 152 (280)
Q Consensus 79 ~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~-----~Gd~Vli~~-P~y~~~~~ 152 (280)
...|..+++...|++++.+.+ +. +.++. |+-|.+|-+++ +-.+++ ||.+..+++ ..|.....
T Consensus 72 DEAYagsrs~~~L~~avkdif-Gf-------q~~iP--thQGRgAE~Il--~~i~ik~~~~~pg~~~~~~sN~~FdTTr~ 139 (471)
T COG3033 72 DEAYAGSRSYYALADAVKDIF-GF-------QYTIP--THQGRGAENIL--IPILIKKGEQEPGSKMVAFSNYHFDTTRG 139 (471)
T ss_pred chhhcccccHHHHHHHHHHhc-Cc-------eeeee--ccCCccHHHHH--HHHHhhhccccCCccccccccceecchhH
Confidence 346999999999999999986 22 44455 88888887777 443343 454444444 44455666
Q ss_pred HHHHcCCeeeEEEeecC---C-----CCCcCHHHHHHHHhcCC--CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCC
Q 023599 153 FFAAAGLAMKTYHYYDP---K-----TNGLDFQGMLQDLGAAP--SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKR 222 (280)
Q Consensus 153 ~~~~~G~~~~~v~~~~~---~-----~~~~d~~~l~~~~~~~~--~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~ 222 (280)
..+..|+.++-++.... + .+.+|++.|++.+.+-. +.+.+++....|.--|+-.|.+.++++.++|++|+
T Consensus 140 h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ 219 (471)
T COG3033 140 HIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYD 219 (471)
T ss_pred HHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcC
Confidence 77788988877765211 1 24678999999998752 22334444445667889999999999999999999
Q ss_pred ceeEEcccC
Q 023599 223 LLPFFDCAY 231 (280)
Q Consensus 223 ~~ii~De~y 231 (280)
+.++.|.+-
T Consensus 220 ipvv~Da~R 228 (471)
T COG3033 220 IPVVMDAAR 228 (471)
T ss_pred CcEEeehhh
Confidence 999999864
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0019 Score=57.31 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
..+|.+.+|+.... +..++ .++.--|.+.....++..-||.+|+--.-..-....-.+..++. +.+--
T Consensus 218 hv~LE~eLA~LHqK--------~aALl--FsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~-K~IFr- 285 (570)
T KOG1360|consen 218 HVRLEAELADLHQK--------EAALL--FSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVP-KHIFR- 285 (570)
T ss_pred hhhHHHHHHHHhcC--------cceee--eeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCc-ceeec-
Confidence 45688888887432 22233 44444455555223344558877765443222222222333322 22221
Q ss_pred cCCCCCcCHHHHHHHHhcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 168 DPKTNGLDFQGMLQDLGAA-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 168 ~~~~~~~d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
. -|++.|++++++. +..+++|-..+-+.=+|.+-+. ++|++++++||.+.+.||++.--.|.+...
T Consensus 286 -H----ND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcpl---eelcDvah~yGAiTFlDEVHAVGlYG~rGa----- 352 (570)
T KOG1360|consen 286 -H----NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPL---EELCDVAHKYGAITFLDEVHAVGLYGPRGA----- 352 (570)
T ss_pred -c----CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCH---HHHHHHHHHhCceeeeehhhhhccccCCCC-----
Confidence 1 3899999999865 3345688888889999988775 566999999999999999997766643210
Q ss_pred Hhhhc----CCeEEEEecccccccccccccceEE
Q 023599 247 MFVAD----GGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 247 ~~~~~----~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
...+. ..-=|..+++.|.||+-| ||+.
T Consensus 353 GvgerdGvm~kvDiIsGTLgKafGcVG---GYIA 383 (570)
T KOG1360|consen 353 GVGERDGVMHKVDIISGTLGKAFGCVG---GYIA 383 (570)
T ss_pred CccccCCcchhhhhcccchhhhccccc---ceeh
Confidence 01111 111255899999998643 5553
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0092 Score=59.06 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=60.5
Q ss_pred HHHHHHHhc-----CCCCcEEEEecC-CCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh
Q 023599 177 QGMLQDLGA-----APSGAIVLLQAS-GHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV 249 (280)
Q Consensus 177 ~~l~~~~~~-----~~~~~~~v~~~~-p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 249 (280)
+.+++.+.+ ...+...+++.. .+.--|..+ ++.-++++.++|++||+++|.||++..|.--.. ... ....
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~--~fa-~e~~ 643 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV--ESA-WELL 643 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc--hhh-HHhc
Confidence 456666653 223445555543 245557665 677889999999999999999999998854211 111 2222
Q ss_pred hcCCeEEEEecccccccccc-cccceEEEE
Q 023599 250 ADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 250 ~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
+..++++ .++|.++ .| +-+|.+++.
T Consensus 644 gv~PDIi---~~gKgLt-gG~~Plaa~l~~ 669 (817)
T PLN02974 644 GCKPDIA---CYAKLLT-GGLVPLAATLAT 669 (817)
T ss_pred CCCCCEE---eeccccc-CCCCccEEEEEc
Confidence 3333544 5689887 67 478877764
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0029 Score=56.99 Aligned_cols=139 Identities=9% Similarity=-0.094 Sum_probs=84.8
Q ss_pred CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEEEeec-CCCCCcCHHHHHHHHhcCC
Q 023599 111 RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTYHYYD-PKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 111 ~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~~~~~~ 187 (280)
++++ ...||+.+++++ ..+++.+|+++++..-++.. +...++.+|...+.....+ .....++++.+ +..
T Consensus 72 ~v~~-l~Gsgt~~~ea~--~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~- 143 (365)
T PLN02452 72 EVLF-LQGGASTQFAAI--PLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELT- 143 (365)
T ss_pred eEEE-EeCccHHHHHHH--HHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCC-
Confidence 4443 378889999999 88989999998888766533 4556667886433332211 11124566654 222
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
++...|.+++....||+.+. ++.++. ++++|+|.+-.-....- .+.+. .+++ .|.-|.+|.
T Consensus 144 ~~~~~v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~Ss~g~~pi--------dv~~~--~v~~-~saqK~lGP 204 (365)
T PLN02452 144 PDAKFVHICANETIHGVEFK--DYPDVG------NVPLVADMSSNFLSKPV--------DVSKY--GVIY-AGAQKNVGP 204 (365)
T ss_pred CCCcEEEECCCCCCCcEecC--cccccC------CCeEEEECCccccCccc--------CHHHc--CEEE-EecccccCC
Confidence 23347777666778887543 233332 37999999875554321 11121 3444 699999998
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
+| +|.+++.
T Consensus 205 ~G--l~~v~vr 213 (365)
T PLN02452 205 SG--VTIVIIR 213 (365)
T ss_pred CC--eEEEEEc
Confidence 88 5666654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0065 Score=61.12 Aligned_cols=154 Identities=10% Similarity=0.045 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCC--CEEEEeCCCCCChHHHHH----HcCCe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQ--HTVYLSQPTYGNHPNFFA----AAGLA 160 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~G--d~Vli~~P~y~~~~~~~~----~~G~~ 160 (280)
+.++++.+++++ +. ..+|+.+ +.+++.+.+++ +.+. +.+| |+|++++-.|+.+..+++ ..|++
T Consensus 150 l~~~Qt~ia~Lt-G~-----~~anaSL--~d~aTAaaea~--~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~Gie 219 (993)
T PLN02414 150 LLNYQTMITDLT-GL-----PMSNASL--LDEGTAAAEAM--AMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLE 219 (993)
T ss_pred HHHHHHHHHHHh-CC-----ChhhEee--cCChHHHHHHH--HHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCE
Confidence 456777788774 32 3488888 99999999988 4443 3444 789999999998876664 46889
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.++. +.. + .. ......+++. -.|-+|.+.+ +++|+++|+++|+++++ .+. .+..-.
T Consensus 220 V~~v~~-~~~----~------~~---~~~v~~vlvq-~P~~~G~v~d---v~~I~~~ah~~GaL~iV-aad-~lal~~-- 277 (993)
T PLN02414 220 VVVADE-KDF----D------YS---SGDVCGVLVQ-YPATDGEVLD---YAEFVKNAHANGVKVVM-ATD-LLALTM-- 277 (993)
T ss_pred EEEecc-hhh----c------cc---cCceEEEEEe-cCCCCeEEcC---HHHHHHHHHHcCCEEEE-EEC-HHHhcC--
Confidence 998887 221 1 01 1112233332 2346998864 67889999999999998 322 111110
Q ss_pred ChhHHHHhhhcCCeEEEEecccccc---cccccccceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTM---GLYGERVGALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~---~~~G~RvG~~v~~ 278 (280)
. ....+.+..++ +++--|.. |..|=+.|++.+.
T Consensus 278 -l---~~pge~GADi~-vgsgqKwg~P~G~GGP~aGflavr 313 (993)
T PLN02414 278 -L---KPPGEWGADIV-VGSAQRFGVPMGYGGPHAAFLATS 313 (993)
T ss_pred -C---CCHhhccCcEE-EECCCccccCCCCCCCCeeEEEEC
Confidence 0 11122333444 56655554 1124447887765
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0017 Score=58.56 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=83.7
Q ss_pred ecccchhHHHHHHHHHHhh-cCCCEEEEeCCCCCCh-H-HHHHHcCC-eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcE
Q 023599 116 QCLSGSGSLRIGADFLAKH-YYQHTVYLSQPTYGNH-P-NFFAAAGL-AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAI 191 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~~-~~Gd~Vli~~P~y~~~-~-~~~~~~G~-~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 191 (280)
.+.||+++++++ +.+++ .+|++|++.. .|+.- . .+++.+|+ ++..+.. +.+..+|++.++. . + .
T Consensus 63 l~GsGT~a~Eaa--~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~--~~g~~~~~~~ve~----~-~-~- 130 (374)
T TIGR01365 63 VPASDTGAVEMA--LWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEA--EYGKLPDLKKVDF----K-N-D- 130 (374)
T ss_pred ECCchHHHHHHH--HHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcC--CCCCCCCHHHcCC----C-C-C-
Confidence 399999999999 88888 4899999875 55432 4 77888999 4777765 5666789888873 1 1 2
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 269 (280)
|++++.-..||+..+.+ +++..+ ++.++|+|.+-.-...+.+ + + .-=+++.|.-|.+++|+
T Consensus 131 -v~~vhnETSTGv~npv~---~i~~~~--~~~lliVDavSs~g~~~l~--------~-d--~iDv~~tgsQK~L~~pp 191 (374)
T TIGR01365 131 -VVFTWNGTTSGVRVPNG---DFIPAD--REGLTICDATSAAFAQDLD--------Y-H--KLDVVTFSWQKVLGGEG 191 (374)
T ss_pred -EEEecCCCchheecccc---cccccc--CCCcEEEEccchhcCCCCC--------h-h--HCcEEEEechhccCCCC
Confidence 33444556788877753 333211 5899999998655543311 1 1 12255888899997753
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0006 Score=61.22 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
..++.+.+|+|+... +.+++ .. |-+...+. +-.++.+|.-|+--+-.+.....-++..|+.++-+..
T Consensus 184 hkelE~l~A~f~g~e-------~a~vF--~m-Gf~TNs~~--~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkH- 250 (519)
T KOG1357|consen 184 HKELEELVARFLGVE-------DAIVF--SM-GFATNSMN--IPSLLGKGSLIISDELNHASLITGARLSGATTRVFRH- 250 (519)
T ss_pred HHHHHHHHHHhcCCc-------ceEEE--ec-cccccccC--cceeecCCcceeeccccchheeccccccCceEEEEec-
Confidence 356777777775322 44443 33 34444444 5567888877766655555555556667777766654
Q ss_pred cCCCCCcCHHHHHHHHhcC----------CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 168 DPKTNGLDFQGMLQDLGAA----------PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 168 ~~~~~~~d~~~l~~~~~~~----------~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
-|.+.||+.+.+. +-++++++...-..=-|.+. ++.+++++++++..+++.||++.--...
T Consensus 251 ------Ndm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv---~Lp~vvalkkkykayl~lDEAHSiGA~g 321 (519)
T KOG1357|consen 251 ------NDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIV---DLPEVVALKKKYKAYLYLDEAHSIGAMG 321 (519)
T ss_pred ------CCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeec---ccHHHHHhhccccEEEEeeccccccccC
Confidence 1466666666431 22445666554443444433 4678899999999999999999665442
Q ss_pred cCCChhHHHHhh--hcCCeEEEEecccccccccc
Q 023599 238 MDADALPVRMFV--ADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 238 ~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~~~G 269 (280)
.. --....+. +..+--|-+++|+|+||.+|
T Consensus 322 ~t--Grgvce~~g~d~~dvDImMGtftKSfga~G 353 (519)
T KOG1357|consen 322 AT--GRGVCEYFGVDPEDVDIMMGTFTKSFGAAG 353 (519)
T ss_pred CC--CcceeeccCCCchhheeecceehhhccccc
Confidence 10 00011111 12235577999999998765
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.021 Score=49.65 Aligned_cols=111 Identities=15% Similarity=0.032 Sum_probs=76.8
Q ss_pred CCCeEEeecccchhHHHHHHHHHHhhc--CCCEEEEeCCCCCC-----hHHHHHHcCCeeeEEEeecCCCCCcCHHHHHH
Q 023599 109 ENRVSTVQCLSGSGSLRIGADFLAKHY--YQHTVYLSQPTYGN-----HPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQ 181 (280)
Q Consensus 109 ~~~i~~v~t~g~~~al~~~~~~~~~~~--~Gd~Vli~~P~y~~-----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 181 (280)
++++++ +.+.+--++-+ +.+.++ +|++|++++-.-.+ ...++...|+. +.+ .....++++++
T Consensus 93 ~~Evvv--~dtts~nl~k~--L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~----~~~~~P~~~~~ 161 (407)
T COG3844 93 AGEVVV--TDTTSINLFKV--LAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL----EGVIAPRALEE 161 (407)
T ss_pred CCceEE--eCCcchHHHHH--HHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc----eeeeChHHHHH
Confidence 577776 77776666655 555554 68999998754332 23344444432 111 11345678888
Q ss_pred HHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 182 DLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 182 ~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
+++... .++++++-|.-||+.+. +.+|-+++++++++++.|-++.--..
T Consensus 162 ~~~dd~---AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGav 210 (407)
T COG3844 162 AITDDV---AVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAV 210 (407)
T ss_pred hhccce---EEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCc
Confidence 887653 49999999999999885 66778899999999999999876655
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0078 Score=55.00 Aligned_cols=188 Identities=10% Similarity=-0.047 Sum_probs=100.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCC-CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSA-DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+|-..|..-..-|+ -.++..+++.+++.+-... ...+.... ..+|-+.+++..-.. .-+++.+ +.
T Consensus 42 ~G~r~lDg~sg~W~~~~Gh-~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~aP~~-----~l~~vFf--~~ 112 (449)
T COG0161 42 DGRRYLDGMSGLWCVNHGH-GRPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELAPEG-----GLDHVFF--TD 112 (449)
T ss_pred CCCEEEecccHHHHhhcCc-CCHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhCCCC-----CccEEEE--eC
Confidence 3456777666643222222 2233444444555421111 11111111 445666666664211 1378888 99
Q ss_pred cchhHHHHHHHHHHh-----hcCCC-EEEEeCCCCCChHHHHHHc--------------CCeeeEEEeecC------CCC
Q 023599 119 SGSGSLRIGADFLAK-----HYYQH-TVYLSQPTYGNHPNFFAAA--------------GLAMKTYHYYDP------KTN 172 (280)
Q Consensus 119 g~~~al~~~~~~~~~-----~~~Gd-~Vli~~P~y~~~~~~~~~~--------------G~~~~~v~~~~~------~~~ 172 (280)
||++|.+.+..+... -+|.. +++.-..+|.+-.-..... -..+..++..+. ..+
T Consensus 113 sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~ 192 (449)
T COG0161 113 SGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG 192 (449)
T ss_pred CchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCC
Confidence 999999988443321 12333 4777778885531111111 111222222110 001
Q ss_pred C----cCHHHHHHHHhcCC-CCcEEEEecCCCCC-CCCCCCH-HHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 173 G----LDFQGMLQDLGAAP-SGAIVLLQASGHNP-TGIDPTA-QQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 173 ~----~d~~~l~~~~~~~~-~~~~~v~~~~p~NP-TG~~~~~-~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
. -..++|++.+.++. ...+.++...-.-- +|..+++ .=++++.++|++||+++|.||+-..|.-
T Consensus 193 ~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGR 263 (449)
T COG0161 193 DEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGR 263 (449)
T ss_pred hHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCc
Confidence 1 23677888887764 55556665443434 6665544 4579999999999999999999988865
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0081 Score=53.27 Aligned_cols=172 Identities=12% Similarity=0.022 Sum_probs=104.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhcc-CCC--CCC-CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEe
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND-LSA--DKE-YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTV 115 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v 115 (280)
.+.+++||...++. ++....+..+.+...+..- -+. ..+ |+...=...|.+.||+|+... +.|+
T Consensus 92 ~G~~~~N~aS~NfL---~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E-------~aiv-- 159 (467)
T KOG1358|consen 92 DGKDVLNFASANFL---GLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTE-------DAIV-- 159 (467)
T ss_pred cCceeecccchhhh---hhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCc-------ceee--
Confidence 45688898877663 3334444444444444310 000 001 333333457889999997433 4444
Q ss_pred ecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC-------C
Q 023599 116 QCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP-------S 188 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-------~ 188 (280)
-+-|-.++..+ +-+++..||.|.+-.-.....+.-++...-.+.++.- .|.+.++..+.+.+ +
T Consensus 160 -Ys~gF~ti~S~--ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k 229 (467)
T KOG1358|consen 160 -YSYGFSTIESA--IPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPK 229 (467)
T ss_pred -eccccchhhhc--chhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecC-------CCHHHHHHhccCcchhhhhccc
Confidence 34445556655 6778899999888765555555555544444555542 36677766665432 2
Q ss_pred C---cEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 189 G---AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 189 ~---~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
+ .++++..----+||...+ +.+|+++..|+...||.||.|+--..
T Consensus 230 ~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~l 277 (467)
T KOG1358|consen 230 KALTRRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVL 277 (467)
T ss_pred cccceEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEecccccccc
Confidence 1 346666555678888776 55668889999999999999966554
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0092 Score=53.54 Aligned_cols=134 Identities=11% Similarity=-0.092 Sum_probs=78.1
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEE-EeCCCCCC--hHHHHHHcCCeeeEEEeecC--CCCCcCHHHHHHHHh
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVY-LSQPTYGN--HPNFFAAAGLAMKTYHYYDP--KTNGLDFQGMLQDLG 184 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vl-i~~P~y~~--~~~~~~~~G~~~~~v~~~~~--~~~~~d~~~l~~~~~ 184 (280)
.+|++ ...||+++++++ ..+++.+||+++ +..-++.. +...++.+| ++..+..... .+..++.+.+ .
T Consensus 68 y~Vlf-l~GggT~~~ea~--~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~----~ 139 (364)
T PRK12462 68 YGVVF-LQGGSSLQFSMI--PMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL----D 139 (364)
T ss_pred CeEEE-EeccHHHHHHHH--HHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh----c
Confidence 34554 377799999999 899999999665 44444422 345555666 5444431011 1233445543 2
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
..+ +...|.++.-...||+.++ ++.+.++.++|+|-+-.-+..+. ...+. =+++.|.=|.
T Consensus 140 ~~~-d~~~v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~~~s~pi--------d~~~~---dvi~agsQKn 199 (364)
T PRK12462 140 WDA-RAPFRHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSDFMSRPF--------DVEAY---GMVYAHAQKN 199 (364)
T ss_pred cCC-CCcEEEEccCCCCceEecC--------cccccCCCeEEEEcCchhhCCCC--------ChHHc---cEEEeecccc
Confidence 221 2336666655667787775 22334689999999865544321 11111 3567888999
Q ss_pred ccccccc
Q 023599 265 MGLYGER 271 (280)
Q Consensus 265 ~~~~G~R 271 (280)
+|.||+=
T Consensus 200 lgP~Glt 206 (364)
T PRK12462 200 LGPAGVT 206 (364)
T ss_pred CCCCceE
Confidence 9977653
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.05 Score=49.72 Aligned_cols=154 Identities=12% Similarity=0.156 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc-CCCEEEEeCCCCCChHHHHH----HcCCeeeEE
Q 023599 90 EFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY-YQHTVYLSQPTYGNHPNFFA----AAGLAMKTY 164 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~-~Gd~Vli~~P~y~~~~~~~~----~~G~~~~~v 164 (280)
++...+++. .+.+. .|.-+ -.|++++-+.+.......+ .+++|+++.-.++.+..+++ ..|++++.+
T Consensus 114 e~Qs~i~eL-TGmdv-----aNaSl--yd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~ 185 (429)
T PF02347_consen 114 EYQSMICEL-TGMDV-----ANASL--YDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEV 185 (429)
T ss_dssp HHHHHHHHH-HTSSE-----E-SEB--SSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE
T ss_pred HHHHHHHHh-hCCCc-----cCCCC--CChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEe
Confidence 455555554 34432 23333 5577766666622222222 34699999999999988766 468899999
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
+. ++. ...| .++...|++.+|| -.|.+ +++++|.++++++|.+++. -+ ..+....
T Consensus 186 ~~-~~~-~~~d-----------~~~~a~v~vq~Pn-~~G~~---ed~~~i~~~~h~~gal~~~-~a-d~~aL~~------ 240 (429)
T PF02347_consen 186 PL-DED-GTTD-----------DDDTAAVMVQNPN-TFGVF---EDIKEIADIAHAAGALVIV-GA-DPNALGG------ 240 (429)
T ss_dssp -B-BTT-CSB------------STTEEEEEEESS--TTSB-----THHHHHHHHHHTT-EEEE-CG-GCCGCCT------
T ss_pred cc-ccc-CCcc-----------ccCeEEEEeecCC-CCceE---eeHHHHHHHHHHcCCEEEE-ec-CHHHHhC------
Confidence 87 332 2333 2345678887775 55654 3488999999999988876 22 1222111
Q ss_pred HHHhhhcCCeEEEEeccccccccc----ccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLY----GERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~----G~RvG~~v~~ 278 (280)
+.+..+.+..++ +++ .|.||.| |=-.|++.+.
T Consensus 241 l~~Pge~GADI~-vg~-~Q~fg~p~~~GGP~~G~~a~~ 276 (429)
T PF02347_consen 241 LKSPGEYGADIV-VGE-HQTFGIPMGFGGPGAGFFAVR 276 (429)
T ss_dssp C--GGGGT-SEE-EEC-CTTTT---CCC-S--EEEEE-
T ss_pred cCChhhcCccEE-eeC-CCCCcccCCCCCCCeeeEEEh
Confidence 123334556777 777 8888764 3345665554
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.08 Score=53.02 Aligned_cols=111 Identities=10% Similarity=0.098 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh--h-cCCCEEEEeCCCCCChHHHHH----HcCCeee
Q 023599 90 EFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK--H-YYQHTVYLSQPTYGNHPNFFA----AAGLAMK 162 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~--~-~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~ 162 (280)
++++.+++. .+.+ ..|..+ ..+++.+.+++ +++. . +++++|++++-.++.+..+++ ..|++++
T Consensus 113 e~Qt~i~eL-tGm~-----~aNaSl--~d~atA~aEa~--~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~ 182 (939)
T TIGR00461 113 NFQTVVSDL-TGLP-----VANASL--LDEGTAAAEAM--ALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVI 182 (939)
T ss_pred HHHHHHHHH-HCCC-----hhhhhc--cchhhHHHHHH--HHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEE
Confidence 455556655 3332 245555 77888877766 4442 2 234899999999998887766 6788887
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcc
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDC 229 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De 229 (280)
.+++ +.|+..+ + ...+++.+| |-+|.+. ++++|+++++++|.+++++.
T Consensus 183 ~~~~----------~~l~~~~--~---~~~v~~q~P-n~~G~ie---d~~~i~~~~h~~gal~~~~a 230 (939)
T TIGR00461 183 VVDC----------SDIKKAV--D---VFGCLLQYP-ATDGSIL---DYKQLIDALHSHKSLVSVAA 230 (939)
T ss_pred EEcH----------HHHhhcC--C---EEEEEEECC-CCCeEEe---cHHHHHHHHHHcCCEEEEEe
Confidence 7754 3344443 1 235666565 5778764 68899999999999999854
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0045 Score=55.31 Aligned_cols=150 Identities=11% Similarity=-0.002 Sum_probs=79.5
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh--cCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee-cCCCCCcCHHHHHHHHhcC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH--YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY-DPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~~~~~ 186 (280)
...++ ++.+|+--..+. ++++- ..++.|+.+.-........+..+|.+++.|+.. +++....|.+.+++.+++.
T Consensus 75 ~~~~~--vP~atgm~l~l~-l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~ 151 (389)
T PF05889_consen 75 KSCFV--VPMATGMSLTLC-LLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL 151 (389)
T ss_dssp CEEEE--ESS-HHHHHHHH-HHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH
T ss_pred cceEE--EecccccHHHHH-HHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh
Confidence 44444 666554332221 33332 356888888654433344455689999888753 2333455788999988765
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
....++.+++..+---|. -.+++++|.++|+++|+..|+..+|.--.... -..+......+--=+++.|+-|.|=
T Consensus 152 G~~~iLcvltttscfapr--~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~---~~~i~~a~~~GRvda~vqS~dkNF~ 226 (389)
T PF05889_consen 152 GADNILCVLTTTSCFAPR--LPDDIEEIAKICKEYDIPHLVNNAYGVQSSKC---MHLIQQAWRVGRVDAFVQSTDKNFM 226 (389)
T ss_dssp CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTTT-HHH---HHHHHHHHHHSTCSEEEEEHHHHHC
T ss_pred CCCCeEEEEEecCccCCC--CCccHHHHHHHHHHcCCceEEccchhhhHHHH---HHHHHHHHhcCCcceeeeecCCCEE
Confidence 444455555443332222 23459999999999999999999997643311 0011111122221256888888884
Q ss_pred c
Q 023599 267 L 267 (280)
Q Consensus 267 ~ 267 (280)
.
T Consensus 227 V 227 (389)
T PF05889_consen 227 V 227 (389)
T ss_dssp E
T ss_pred e
Confidence 3
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0036 Score=56.48 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=69.1
Q ss_pred EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 023599 139 TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIR 215 (280)
Q Consensus 139 ~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~ 215 (280)
.+..++-.....+..+...|.+++.++. ++ +++++.+.|++++.+. .-.+.+++. +-=|..+-+-+++.+|.
T Consensus 184 V~Y~SDqahssveka~~i~~VklR~l~t-d~-n~~mr~~~L~~AIe~D~arGlIPf~v~a---t~GTT~~ca~D~l~elg 258 (511)
T KOG0628|consen 184 VAYCSDQAHSSVEKACLIAGVKLRALPT-DE-NFGMRGDTLRKAIEEDIARGLIPFFVCA---TLGTTSSCAFDELEELG 258 (511)
T ss_pred eEEecCcccchHHHhHhhcceeEEEeec-cc-CcCCCHHHHHHHHHHHHhCCCccEEEEE---eecCccccccccHHHhc
Confidence 3455566666677777778889999998 34 8999999999999864 222334443 22333344678899999
Q ss_pred HHHHhCCceeEEcccCCCccc
Q 023599 216 QLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 216 ~~~~~~~~~ii~De~y~~~~~ 236 (280)
.+|+++++|+-+|.+|+.-.+
T Consensus 259 ~Vc~~~glWLHVDAAYAGsa~ 279 (511)
T KOG0628|consen 259 PVCREEGLWLHVDAAYAGSAF 279 (511)
T ss_pred chhhhcCEEEEeehhhccccc
Confidence 999999999999999986655
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.1 Score=46.50 Aligned_cols=221 Identities=15% Similarity=0.096 Sum_probs=116.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
++..++|+..|.....-|+ --++.+..+.+++..--.....|... -..+|.+++++.+-+.- ..+++ +++
T Consensus 48 ~G~ryLD~f~Gi~tvslGH-chP~v~~a~~kQl~~l~H~t~~~~~~-pi~~~Ae~L~s~~P~~l------~~vfF--~ns 117 (442)
T KOG1404|consen 48 EGRRYLDAFGGIVTVSLGH-CHPDVVAAAVKQLKKLYHTTSGYLNP-PIHDLAEALVSKLPGDL------KVVFF--VNS 117 (442)
T ss_pred CCceeehhhCCeEEEEcCC-CChHHHHHHHHhhhhhEEeeccccCC-cHHHHHHHHHHhCCCCc------eEEEE--ecC
Confidence 4567788887765333232 23344455555543111112334332 35678888887753321 34556 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH-HHcCCeeeEEEe------------ecCCC--CCcC-----H---
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF-AAAGLAMKTYHY------------YDPKT--NGLD-----F--- 176 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~-~~~G~~~~~v~~------------~~~~~--~~~d-----~--- 176 (280)
|++|.+++..+..+-...-.++--.-+|.+..... ...|......+. .++.. ++=+ .
T Consensus 118 GsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~ 197 (442)
T KOG1404|consen 118 GSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRY 197 (442)
T ss_pred CchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHH
Confidence 99999999433322222235555556775543332 222222111111 00000 1101 2
Q ss_pred -HHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 177 -QGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 177 -~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
++++..+... +...+.++...-+---|.+ +++-=+++..++|+++|.++|.||+...|.--. .. ..+. ..+
T Consensus 198 a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG--~~---wgfe-~h~ 271 (442)
T KOG1404|consen 198 AKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG--HM---WGFE-SHG 271 (442)
T ss_pred HHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc--cc---cccc-ccC
Confidence 3444444433 2333444444433333433 445568999999999999999999998886532 12 2221 111
Q ss_pred eEEEEecccccccccccccceEEE
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
-+==|-+++|.+| .|.-+|.++.
T Consensus 272 v~PDIvTmAKgiG-nG~Pl~AVvt 294 (442)
T KOG1404|consen 272 VVPDIVTMAKGIG-NGFPLGAVVT 294 (442)
T ss_pred CCccHHHHHhhcc-CCCcceeeec
Confidence 1222568899998 7899998765
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.2 Score=45.27 Aligned_cols=153 Identities=12% Similarity=0.133 Sum_probs=90.0
Q ss_pred EeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCC-----CCC----HHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 46 NLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPI-----TGL----PEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 46 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-----~G~----~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
-++.|.+ + . ..++.+. +.+..++.....|+|- +|. -+++..+++. .+.+. .|--.
T Consensus 79 fiG~GyY---~-~-~~P~vI~---rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dL-TGm~V-----ANASm-- 142 (450)
T COG0403 79 FIGAGYY---D-T-YTPPVIL---RNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADL-TGLDV-----ANASM-- 142 (450)
T ss_pred hccCccc---C-C-cCcHHHH---HHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHH-hCCCc-----ccchh--
Confidence 4567776 2 1 3334443 2344335555667663 332 2334444443 44443 33333
Q ss_pred cccchhHHHHHHHHHHhhc-CCCEEEEeCCCCCChHHHHHH----cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcE
Q 023599 117 CLSGSGSLRIGADFLAKHY-YQHTVYLSQPTYGNHPNFFAA----AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAI 191 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~-~Gd~Vli~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 191 (280)
-.++|.+-+++.......+ +..+|+++.-.|+.+..+++- .|.+++.++. + |.+.+++. ... ...
T Consensus 143 ~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~-~------d~~~l~~~-~~~--~~~ 212 (450)
T COG0403 143 LDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA-D------DLDDLESA-DDG--DVF 212 (450)
T ss_pred hhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc-c------hhhhhhhc-ccc--CeE
Confidence 5667776666632223333 358999999999999999873 4567776665 1 67777776 322 223
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF 227 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~ 227 (280)
.+++.+| ...-....+++++.+.+++++.++++
T Consensus 213 gv~vQyP---~~~G~~~~d~~~l~~~~h~~~al~~v 245 (450)
T COG0403 213 GVLVQYP---NTFGIVEEDLRALIEAAHSAGALVIV 245 (450)
T ss_pred EEEEecC---CCCCccchhHHHHHHHHhhcCCEEEE
Confidence 5555444 43335667899999999999876664
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.07 Score=50.54 Aligned_cols=144 Identities=13% Similarity=0.122 Sum_probs=95.8
Q ss_pred CCCCCC---CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh---HHHHHHHHHHhhcCC--CEEEEeCCCCCCh
Q 023599 79 DKEYLP---ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG---SLRIGADFLAKHYYQ--HTVYLSQPTYGNH 150 (280)
Q Consensus 79 ~~~y~~---~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~---al~~~~~~~~~~~~G--d~Vli~~P~y~~~ 150 (280)
.+.|.| .+|+.++-+.+-++|..-.+. +++.+-.-+|+++ ++..+..++.....| ...+||....+..
T Consensus 568 IHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~----D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN 643 (1001)
T KOG2040|consen 568 IHPFAPVEQAQGYQQLFTELEKDLCEITGF----DSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN 643 (1001)
T ss_pred CCCCCchHHHhhHHHHHHHHHHHhheeecc----cceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC
Confidence 455666 356666666666665443332 5555432333332 333332222222233 3577787788878
Q ss_pred HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEccc
Q 023599 151 PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCA 230 (280)
Q Consensus 151 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~ 230 (280)
...+.+.|.+++.|.+ ..++.+|...|++...++.++-..++++.|+ ..-+-.+.+++++++..+||--|-.|-+
T Consensus 644 PASA~MagmkvvpV~~--~~~G~id~~dLk~kaekh~~~Laa~MvTYPS---T~GvfE~~i~d~cd~iHehGGQVYlDGA 718 (1001)
T KOG2040|consen 644 PASAAMAGMKVVPVGC--DANGNIDMVDLKAKAEKHKDNLAALMVTYPS---THGVFEEGIDDICDIIHEHGGQVYLDGA 718 (1001)
T ss_pred hhhHHhcCCEEEEeec--cCCCCccHHHHHHHHHHhhhhhheeEEeccc---ccccccccHHHHHHHHHhcCCEEEecCC
Confidence 8888899999999998 3456799999999998876666677775554 3335567799999999999999988887
Q ss_pred C
Q 023599 231 Y 231 (280)
Q Consensus 231 y 231 (280)
.
T Consensus 719 N 719 (1001)
T KOG2040|consen 719 N 719 (1001)
T ss_pred C
Confidence 6
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.076 Score=47.83 Aligned_cols=91 Identities=11% Similarity=0.096 Sum_probs=61.8
Q ss_pred CEEEEe-CCCCCChHHHHHHcC---CeeeEEEeecCCCCCcCHHHHHHHHhcCCCC---cEEEEecCCCCCCCCCCCHHH
Q 023599 138 HTVYLS-QPTYGNHPNFFAAAG---LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSG---AIVLLQASGHNPTGIDPTAQQ 210 (280)
Q Consensus 138 d~Vli~-~P~y~~~~~~~~~~G---~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~---~~~v~~~~p~NPTG~~~~~~~ 210 (280)
+-|+.. +-++......+..+| -.++.|+. .+.+.+++++||+.+.+...+ +.++..+..+..-| .-++
T Consensus 197 ~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t--~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~G---AFDd 271 (510)
T KOG0629|consen 197 PLILFTSEESHYSIKKAAAFLGLGTDHCIKVKT--DERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLG---AFDD 271 (510)
T ss_pred cEEEEecccchhhHHHHHHHhccCCceeEEecc--cccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeee---ccCc
Confidence 334443 334444666666677 36777777 345689999999999765333 44444333333444 4567
Q ss_pred HHHHHHHHHhCCceeEEcccCCC
Q 023599 211 WEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 211 l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
+..|+++|++|++|+.+|.+|+.
T Consensus 272 L~~iadiC~k~~lWmHvDAAwGG 294 (510)
T KOG0629|consen 272 LNGIADICEKHKLWMHVDAAWGG 294 (510)
T ss_pred HHHHHHHHHhcCEEEEeeccccc
Confidence 88889999999999999999987
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.084 Score=46.70 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=89.1
Q ss_pred EeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-HHHcCC---------eeeEEEeecCCCCCcCHHHHHHHH
Q 023599 114 TVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-FAAAGL---------AMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 114 ~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-~~~~G~---------~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
-|+..+|+.|.+.+ +.+++.|+++|+--+.--+++... ...-+- +--++.+ ++.++-+|.|.|++..
T Consensus 109 NVQp~SGSPANfav--Ytall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv-~~~TG~IDYD~Le~~A 185 (477)
T KOG2467|consen 109 NVQPYSGSPANFAV--YTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKV-DPSTGYIDYDKLEKTA 185 (477)
T ss_pred eeccCCCCchhhHH--HhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceee-CCCCCceehHHHHHHH
Confidence 36789999999999 999999999998776544443211 111111 1122334 5677889999999987
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccC-CCcccCcCCChhHHHHhhhcCCeEEEEecc
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAY-QGFVMNMDADALPVRMFVADGGECLVAQSY 261 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 261 (280)
..-.+ + +++--. ..++ .-+..++.++|.+.|.+++.|-++ +.++... ..++..... =|+..+.
T Consensus 186 ~~frP-k-~iiaG~------SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~--vipsPFey~-----DiVTTTT 250 (477)
T KOG2467|consen 186 TLFRP-K-LIIAGT------SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAG--VIPSPFEYC-----DIVTTTT 250 (477)
T ss_pred HhcCC-c-EEEecc------ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcc--cCCCccccc-----ceeeccc
Confidence 65422 2 444211 1122 234577788889999999999988 3333321 111112221 2667888
Q ss_pred cccccccccccceEEEE
Q 023599 262 SKTMGLYGERVGALSVV 278 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~ 278 (280)
-|++ -|=|-|.+...
T Consensus 251 HKsL--RGPRg~mIFyR 265 (477)
T KOG2467|consen 251 HKSL--RGPRGAMIFYR 265 (477)
T ss_pred cccc--cCCcceeEEEe
Confidence 8886 47788876643
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.24 Score=50.48 Aligned_cols=213 Identities=11% Similarity=-0.011 Sum_probs=123.0
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
.-+||++.+- .....-.+-+......+. ......|.++.|...||+.||.|+...++.++++++|++ .++-..
T Consensus 388 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 460 (1082)
T PLN02672 388 GSLDLSFEDE---SVADEKIPFLAYLASALK--GLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVV--FPSRAV 460 (1082)
T ss_pred hhcccccccc---ccchhhccHHHHHHHHHc--cCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEE--eccHHH
Confidence 4567765431 111122223333334444 444678999999999999999999988999999999998 999999
Q ss_pred HHHHHHHHHH----hhcCCCEEEEeCCCCCChHHHHHHcCC-------eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcE
Q 023599 123 SLRIGADFLA----KHYYQHTVYLSQPTYGNHPNFFAAAGL-------AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAI 191 (280)
Q Consensus 123 al~~~~~~~~----~~~~Gd~Vli~~P~y~~~~~~~~~~G~-------~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 191 (280)
|++.+.++.+ +++.+.+-.++ ..+...+...|. ..++|-- .+. .-+.+.+++.+- ++.
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~--~~~ 529 (1082)
T PLN02672 461 AIENALRLFSPRLAIVDEHLTRWLP----KKWLTSLAIENATSDSKSDDVITVIE-APR----QSDLVIELIKKL--KPQ 529 (1082)
T ss_pred HHHHHHHhhChHHHhhhhhhhccCC----HHHHhHhhhhcccccCccCCeEEEEe-CCC----cchHHHHHHHhC--CCe
Confidence 9988844432 33344333332 122333333221 1111111 111 123445555433 122
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccC-CCcccCcCCChhHHHHhhh--cCCeEEEEeccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAY-QGFVMNMDADALPVRMFVA--DGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~ 268 (280)
+|+..-.. +-..+...++.|++.+++.|..++.|.+- .++..-+. +..-++.+.. ...+..++.++-|+--.+
T Consensus 530 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (1082)
T PLN02672 530 VVVTGMAD---FEMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSLPG-SNGVLKYLAGHPLPSHAAIICGLVKNQVYS 605 (1082)
T ss_pred EEEEeccc---hhhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccCCC-cccHHHHhcCCCCCcchhHhhhhhhccccc
Confidence 55553333 33456677899999999999999999863 34443221 1112222222 233777788888877667
Q ss_pred ccccceEEE
Q 023599 269 GERVGALSV 277 (280)
Q Consensus 269 G~RvG~~v~ 277 (280)
.+-+.+++-
T Consensus 606 ~~~~~~~~~ 614 (1082)
T PLN02672 606 DLEVAFVIS 614 (1082)
T ss_pred cceEEEEec
Confidence 887777653
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.71 E-value=5.8 Score=33.92 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=80.4
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh--cCC-CEEEEeCCCCCChHHHHHHcCCeeeEE-EeecCCCCCcCHHHHHHHHhc
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH--YYQ-HTVYLSQPTYGNHPNFFAAAGLAMKTY-HYYDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~--~~G-d~Vli~~P~y~~~~~~~~~~G~~~~~v-~~~~~~~~~~d~~~l~~~~~~ 185 (280)
.+.++|...-|+ ++.+. ++++- +|. ..|+-+.-.-.......-..|++++-+ +..+.+.-..|++.++..+++
T Consensus 76 ~nc~vvpl~tgm-slslc--~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee 152 (432)
T KOG3843|consen 76 ANCFVVPLATGM-SLSLC--FLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEE 152 (432)
T ss_pred hceeEEeccccc-cHHHH--HHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHH
Confidence 555553333333 34444 34332 344 334433322222233334678887666 443444455689999998887
Q ss_pred CCCCcEEEEe-c--CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccc
Q 023599 186 APSGAIVLLQ-A--SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYS 262 (280)
Q Consensus 186 ~~~~~~~v~~-~--~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 262 (280)
....- ++++ + ++--| -+++.+++|..+|..|++.-|+.++|+--..+. .-.+....+.+.-=.++.|+-
T Consensus 153 ~g~dc-ilci~sttscfap----r~pd~leaiaaica~~diphivnnayglqsee~---i~~iaa~~~~grida~vqsld 224 (432)
T KOG3843|consen 153 LGEDC-ILCIHSTTSCFAP----RSPDNLEAIAAICAAHDIPHIVNNAYGLQSEEC---IHKIAAAAECGRIDAFVQSLD 224 (432)
T ss_pred hCCce-EEEEeecccccCC----CCCchHHHHHHHHHccCchhhhccccccchHHH---HHHHHHHhhhccHHHHHHHhh
Confidence 74433 3443 1 11122 256789999999999999999999997654321 001111111121124567777
Q ss_pred cccccc
Q 023599 263 KTMGLY 268 (280)
Q Consensus 263 K~~~~~ 268 (280)
|.|-+|
T Consensus 225 knf~vp 230 (432)
T KOG3843|consen 225 KNFMVP 230 (432)
T ss_pred hcceee
Confidence 777544
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.34 Score=42.46 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=47.0
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHH-HHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQ-QWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~-~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
|.+.|+..+.. ++.+.+++..-+--.|+++++. =+++..++|++||+++|.||+...+.-.
T Consensus 195 d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RT 256 (427)
T KOG1402|consen 195 DAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLART 256 (427)
T ss_pred CHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhccccc
Confidence 68899998876 3445666665667777766554 4789999999999999999999877653
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=4.8 Score=40.70 Aligned_cols=147 Identities=10% Similarity=0.082 Sum_probs=78.8
Q ss_pred eeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCC-----CC----HHHHHHHHHHHhCCCCccccCCCeEE
Q 023599 44 KLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPIT-----GL----PEFNKLSAKLIFGADSPAIKENRVST 114 (280)
Q Consensus 44 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----G~----~~lr~~ia~~l~~~~~~~~~~~~i~~ 114 (280)
..-++.|.+ + ...+..+. +.+..+++....|.|-+ |. .+++..+++. .+.+. .|--+
T Consensus 81 ~~fiG~G~y---~--~~~P~vi~---~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~L-tGm~v-----aNASl 146 (954)
T PRK12566 81 TSLIGMGYH---G--TVTPTVIL---RNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDL-TGLDL-----ANASL 146 (954)
T ss_pred ccccccccc---C--CcCcHHHH---HHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHH-hCchh-----hhhhh
Confidence 345677776 2 13334442 22332244455666643 32 3455555554 34332 22223
Q ss_pred eecccchhHHHHHHHHHHhhc-CCCEEEEeCCCCCChHHHHH----HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCC
Q 023599 115 VQCLSGSGSLRIGADFLAKHY-YQHTVYLSQPTYGNHPNFFA----AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSG 189 (280)
Q Consensus 115 v~t~g~~~al~~~~~~~~~~~-~Gd~Vli~~P~y~~~~~~~~----~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~ 189 (280)
-.+++.+-+++.......+ ...+|+|++-.++.+..+++ ..|++++. +.+++.+.+ +
T Consensus 147 --~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~~---~ 208 (954)
T PRK12566 147 --LDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAAH---A 208 (954)
T ss_pred --ccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCCC---C
Confidence 4466655554411112222 24689999999988888776 34555543 222232322 2
Q ss_pred cEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeE
Q 023599 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPF 226 (280)
Q Consensus 190 ~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii 226 (280)
...+++.+|| -.|.+ +++++|.++++++|.++|
T Consensus 209 ~~~v~vq~P~-~~G~i---~d~~~i~~~~h~~gal~~ 241 (954)
T PRK12566 209 VFGALLQYPD-THGEI---RDLRPLIDQLHGQQALAC 241 (954)
T ss_pred EEEEEEECCC-CceEE---ccHHHHHHHHHHcCCEEE
Confidence 3466666664 67766 568888999999998765
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.1 Score=37.16 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=85.7
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-------HcCC---eeeEE---Eeec-----------CC-C
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-------AAGL---AMKTY---HYYD-----------PK-T 171 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-------~~G~---~~~~v---~~~~-----------~~-~ 171 (280)
+++|++|.+++.++..-...-.-|++.+-.|.++..... ..|. ++.++ |+.| +. +
T Consensus 108 ~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~ 187 (452)
T KOG1403|consen 108 VNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDAD 187 (452)
T ss_pred ecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCccc
Confidence 999999999996655544444455666667766543321 0121 22222 2211 00 0
Q ss_pred -CCcCHHHHHHHHh---cCCCCcEEEEecCCCCCCCCCCCHHH-HHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 172 -NGLDFQGMLQDLG---AAPSGAIVLLQASGHNPTGIDPTAQQ-WEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 172 -~~~d~~~l~~~~~---~~~~~~~~v~~~~p~NPTG~~~~~~~-l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
...=.+.+++.++ .+..+...++-.+-+.=-|+++++.. .+++++..+.+|-+.|.||+.-.|.-- ...+|++.
T Consensus 188 ~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRv-G~hyWafq 266 (452)
T KOG1403|consen 188 MGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRV-GSHYWAFQ 266 (452)
T ss_pred chhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhccccc-chhhhhhh
Confidence 0011233333332 22233334554455555677776655 588889999999999999999887653 23455544
Q ss_pred HhhhcCCeEEEEecccccccccccccceEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
.+ +.-+.+ -++.|-.| .|.-++.++
T Consensus 267 ~y-~fiPDI---VtmgKpmG-NGhPVa~Va 291 (452)
T KOG1403|consen 267 TY-NFIPDI---VTMGKPMG-NGHPVAAVA 291 (452)
T ss_pred hh-ccccch---heecccCC-CCCeeeEEe
Confidence 33 111233 35568887 788787765
|
|
| >cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex) | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.6 Score=38.87 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=46.4
Q ss_pred HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE
Q 023599 151 PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF 227 (280)
Q Consensus 151 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~ 227 (280)
...+..+.+++..+.+.|..+|.+..+.+.++-..... .....+.|..++.+|+++|++.|+++||-||-
T Consensus 24 id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~-------~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 24 IDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGS-------TEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred HHHHHHhCCcEEEEEeecCCcceeeecCcccccccccc-------cccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 34455678888888886666666665554443211111 01234567789999999999999999987763
|
SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. |
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.10 E-value=4.5 Score=35.30 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=47.0
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHhhcCC-C-EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHh
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAKHYYQ-H-TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~~~~G-d-~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
+.+...++-.|+ |+-++.++ +.+.. .| . .+.+|+-.-......++.+|++++.+|- .+....=-.+..++...
T Consensus 59 l~pG~tIVE~TS-GNTGI~LA--~vaa~-~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~-~~g~~~~a~~~a~el~~ 133 (300)
T COG0031 59 LKPGGTIVEATS-GNTGIALA--MVAAA-KGYRLIIVMPETMSQERRKLLRALGAEVILTPG-APGNMKGAIERAKELAA 133 (300)
T ss_pred CCCCCEEEEcCC-ChHHHHHH--HHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC-CCCchHHHHHHHHHHHH
Confidence 556666665454 45566666 44322 34 2 3444443445567888999999999986 22111112333344444
Q ss_pred cCCCCcEEEEecCCCCCC
Q 023599 185 AAPSGAIVLLQASGHNPT 202 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPT 202 (280)
+.+. .++..+.+.||.
T Consensus 134 ~~p~--~~~~~~Qf~Npa 149 (300)
T COG0031 134 EIPG--YAVWLNQFENPA 149 (300)
T ss_pred hCCC--ceEchhhcCCCc
Confidence 4432 245544455554
|
|
| >cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides | Back alignment and domain information |
|---|
Probab=85.02 E-value=2.7 Score=36.81 Aligned_cols=69 Identities=10% Similarity=0.011 Sum_probs=46.0
Q ss_pred HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE
Q 023599 151 PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF 227 (280)
Q Consensus 151 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~ 227 (280)
...+..++.++..+.+.|..+|.+....+.++-... .. .++ .+.|-.++++|+++|++.|+++|+-||-
T Consensus 22 id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g-~~------~~~-~~~~~~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 22 IDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKG-GQ------INP-RSPGGFYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhc-cc------ccC-CCCCCeECHHHHHHHHHHHHHcCCEEEE
Confidence 344556788888888866666766655555543221 10 112 2445579999999999999999987663
|
These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.34 E-value=2.6 Score=37.52 Aligned_cols=87 Identities=8% Similarity=0.051 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCC---CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc---CCChhHHHHh
Q 023599 176 FQGMLQDLGAAP---SGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM---DADALPVRMF 248 (280)
Q Consensus 176 ~~~l~~~~~~~~---~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~---~~~~~~~~~~ 248 (280)
++++++.+.+.. +..+.+++..-+.--|. --|++-++.|.+++++|++.+|+||+.-.-.... .++++-+.+.
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P 334 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP 334 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence 456666665432 22334444333333332 3578899999999999999999999985544321 1223222222
Q ss_pred hhcCCeEEEEecccccccccc
Q 023599 249 VADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G 269 (280)
.. +-+|||-|-..|
T Consensus 335 ----pD---~vTFSKK~q~gG 348 (484)
T KOG1405|consen 335 ----PD---VVTFSKKFQTGG 348 (484)
T ss_pred ----cc---ceehhhhhhcCc
Confidence 22 346888875444
|
|
| >cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides | Back alignment and domain information |
|---|
Probab=82.21 E-value=3.2 Score=37.19 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=44.9
Q ss_pred HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE
Q 023599 151 PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF 227 (280)
Q Consensus 151 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~ 227 (280)
...+..+.+++..+.+.|...|.+....+.++.... . ...|..++.+|+++|++.|+++||-||-
T Consensus 24 Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~g-a-----------~~~~~~YT~~di~eiv~yA~~rgI~vIP 88 (348)
T cd06562 24 IDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKG-A-----------YSPSEVYTPEDVKEIVEYARLRGIRVIP 88 (348)
T ss_pred HHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhcc-C-----------cCCCceECHHHHHHHHHHHHHcCCEEEE
Confidence 344456778888888866666777665555532211 0 1245679999999999999999987764
|
The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in |
| >cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin | Back alignment and domain information |
|---|
Probab=80.76 E-value=3.8 Score=36.11 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=40.4
Q ss_pred HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeE
Q 023599 151 PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPF 226 (280)
Q Consensus 151 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii 226 (280)
...+..+..++....+.|..+|.+....+.+.. +. . ..|..++.+|+++|++.|+++|+-||
T Consensus 24 Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt-~~---------g----~~~~~yT~~di~elv~yA~~rgI~vI 85 (311)
T cd06570 24 LDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQ-QK---------A----SDGLYYTQEQIREVVAYARDRGIRVV 85 (311)
T ss_pred HHHHHHhCCeEEEEEEecCCCceeecCCCcccc-cc---------C----CCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 344456777888888755555555443332211 11 0 13556999999999999999998766
|
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 280 | ||||
| 3ii0_A | 422 | Crystal Structure Of Human Glutamate Oxaloacetate T | 2e-72 | ||
| 1ajs_A | 412 | Refinement And Comparison Of The Crystal Structures | 4e-72 | ||
| 1ajr_A | 412 | Refinement And Comparison Of The Crystal Structures | 2e-71 | ||
| 2cst_A | 411 | Crystal Structure Of The Closed Form Of Chicken Cyt | 2e-71 | ||
| 1aat_A | 411 | Oxoglutarate-Induced Conformational Changes In Cyto | 5e-71 | ||
| 7aat_A | 401 | X-Ray Structure Refinement And Comparison Of Three | 1e-67 | ||
| 1aka_A | 401 | Structural Basis For The Catalytic Activity Of Aspa | 5e-67 | ||
| 3pd6_A | 401 | Crystal Structure Of Mouse Mitochondrial Aspartate | 2e-66 | ||
| 3hlm_A | 401 | Crystal Structure Of Mouse Mitochondrial Aspartate | 1e-65 | ||
| 1b4x_A | 396 | Aspartate Aminotransferase From E. Coli, C191s Muta | 6e-62 | ||
| 2d5y_A | 396 | Aspartate Aminotransferase Mutant Mc With Isovaleri | 2e-61 | ||
| 1aam_A | 396 | The Structural Basis For The Altered Substrate Spec | 2e-61 | ||
| 3aat_A | 396 | Activity And Structure Of The Active-Site Mutants R | 2e-61 | ||
| 1asl_A | 396 | Crystal Structures Of Escherichia Coli Aspartate Am | 2e-61 | ||
| 1qit_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 3e-61 | ||
| 1ari_A | 396 | Aspartate Aminotransferase, W140h Mutant, Maleate C | 3e-61 | ||
| 1qir_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 4e-61 | ||
| 1qis_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 5e-61 | ||
| 1asf_A | 396 | The Structural Basis For The Reduced Activity Of Th | 6e-61 | ||
| 4f5m_A | 406 | Wild-type E. Coli Aspartate Aminotransferase: A Tem | 1e-60 | ||
| 2aat_A | 396 | 2.8-Angstroms-Resolution Crystal Structure Of An Ac | 1e-60 | ||
| 1ix6_A | 396 | Aspartate Aminotransferase Active Site Mutant V39f | 1e-60 | ||
| 1aia_A | 396 | Structural Basis For The Catalytic Activity Of Aspa | 1e-60 | ||
| 2q7w_A | 396 | Structural Studies Reveals The Inactivation Of E. C | 1e-60 | ||
| 1arh_A | 396 | Aspartate Aminotransferase, Y225rR386A MUTANT Lengt | 2e-60 | ||
| 1asb_A | 396 | The Structural Basis For The Reduced Activity Of Th | 2e-60 | ||
| 1g7w_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 2e-60 | ||
| 1g4x_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 2e-60 | ||
| 1g7x_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 2e-60 | ||
| 1ahy_A | 396 | Aspartate Aminotransferase Hexamutant Length = 396 | 4e-60 | ||
| 1g4v_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 6e-60 | ||
| 3zzj_A | 396 | Structure Of An Engineered Aspartate Aminotransfera | 6e-60 | ||
| 2d61_A | 396 | Aspartate Aminotransferase Mutant Ma With Maleic Ac | 8e-60 | ||
| 1ix8_A | 396 | Aspartate Aminotransferase Active Site Mutant V39fN | 9e-60 | ||
| 1bqa_A | 396 | Aspartate Aminotransferase P195a Mutant Length = 39 | 9e-60 | ||
| 4f5f_A | 406 | Structure Of Aspartate Aminotransferase Conversion | 2e-59 | ||
| 1tog_A | 396 | Hydrocinnamic Acid-Bound Structure Of Srhept + A293 | 2e-59 | ||
| 1toj_A | 396 | Hydrocinnamic Acid-Bound Structure Of Srhept Mutant | 2e-59 | ||
| 1toe_A | 396 | Unliganded Structure Of Hexamutant + A293d Mutant O | 2e-59 | ||
| 1czc_A | 396 | Aspartate Aminotransferase Mutant Atb17139S142N WIT | 2e-59 | ||
| 1bqd_A | 396 | Aspartate Aminotransferase P138aP195A DOUBLE MUTANT | 7e-59 | ||
| 3tat_A | 397 | Tyrosine Aminotransferase From E. Coli Length = 397 | 8e-59 | ||
| 3fsl_A | 397 | Crystal Structure Of Tyrosine Aminotransferase Trip | 9e-59 | ||
| 2d64_A | 396 | Aspartate Aminotransferase Mutant Mabc With Isovale | 1e-58 | ||
| 2d66_A | 396 | Aspartate Aminotransferase Mutant Mab Length = 396 | 1e-58 | ||
| 1yoo_A | 396 | Aspartate Aminotransferase Mutant Atb17 With Isoval | 3e-58 | ||
| 4f5h_A | 406 | Intercoversion Of Substrate Specificity: E. Coli As | 6e-58 | ||
| 4f5i_A | 406 | Substrate Specificity Conversion Of E. Coli Pyridox | 1e-57 | ||
| 4f5j_A | 406 | Rational Design And Directed Evolution For Conversi | 3e-57 | ||
| 4f5g_A | 406 | Rational Design And Directed Evolution Of E. Coli A | 3e-57 | ||
| 4f5k_A | 406 | Substrate Specificity Conversion Of Aspartate Amino | 1e-56 | ||
| 1yaa_A | 412 | Aspartate Aminotransferase From Saccharomyces Cerev | 3e-56 | ||
| 3uak_A | 406 | Crystal Structure Of De Novo Designed Cysteine Este | 2e-54 | ||
| 4f4e_A | 420 | Crystal Structure Of Aromatic-Amino-Acid Aminotrans | 2e-52 | ||
| 4eff_A | 420 | Crystal Structure Of Aromatic-Amino-Acid Aminotrans | 2e-52 | ||
| 4h51_A | 420 | Crystal Structure Of A Putative Aspartate Aminotran | 2e-52 | ||
| 3meb_A | 448 | Structure Of Cytoplasmic Aspartate Aminotransferase | 2e-52 | ||
| 4eu1_A | 409 | Structure Of A Mitochondrial Aspartate Aminotransfe | 7e-52 | ||
| 1ay4_A | 394 | Aromatic Amino Acid Aminotransferase Without Substr | 1e-42 | ||
| 3k7y_A | 405 | Aspartate Aminotransferase Of Plasmodium Falciparum | 1e-38 | ||
| 3rq1_A | 418 | Crystal Structure Of Aminotransferase Class I And I | 3e-11 | ||
| 4emy_A | 413 | Crystal Structure Of Aminotransferase From Anaeroco | 5e-06 |
| >pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422 | Back alignment and structure |
|
| >pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411 | Back alignment and structure |
|
| >pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411 | Back alignment and structure |
|
| >pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms Of Mitochondrial Aspartate Aminotransferase Length = 401 | Back alignment and structure |
|
| >pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking Its Pyridoxal-5'-Phosphate-Binding Lysine Residue Length = 401 | Back alignment and structure |
|
| >pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identified Kynurenine Aminotransferase-Iv Length = 401 | Back alignment and structure |
|
| >pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate AminotransferaseKYNURENINE AMINOTRANSFERASE IV Length = 401 | Back alignment and structure |
|
| >pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396 | Back alignment and structure |
|
| >pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396 | Back alignment and structure |
|
| >pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396 | Back alignment and structure |
|
| >pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406 | Back alignment and structure |
|
| >pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396 | Back alignment and structure |
|
| >pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396 | Back alignment and structure |
|
| >pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396 | Back alignment and structure |
|
| >pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396 | Back alignment and structure |
|
| >pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT Length = 396 | Back alignment and structure |
|
| >pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The D223a(D222a) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L Length = 396 | Back alignment and structure |
|
| >pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L Length = 396 | Back alignment and structure |
|
| >pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292LR386L Length = 396 | Back alignment and structure |
|
| >pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396 | Back alignment and structure |
|
| >pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f Length = 396 | Back alignment and structure |
|
| >pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396 | Back alignment and structure |
|
| >pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A Length = 396 | Back alignment and structure |
|
| >pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant Length = 396 | Back alignment and structure |
|
| >pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To Tyrosine Aminotransferase: Chimera P1. Length = 406 | Back alignment and structure |
|
| >pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396 | Back alignment and structure |
|
| >pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT Length = 396 | Back alignment and structure |
|
| >pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli Length = 397 | Back alignment and structure |
|
| >pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple Mutant (P181q, R183g,A321k) From Escherichia Coli At 2.35 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396 | Back alignment and structure |
|
| >pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate Aminotransferase To Tyrosine Aminotransferase: Chimera P3. Length = 406 | Back alignment and structure |
|
| >pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli Pyridoxal-5'-phosphate Dependent Aspartate Aminotransferase To Tyrosine Aminotransferase: Chimera P4. Length = 406 | Back alignment and structure |
|
| >pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of Substrate Specificity From E.coli Aspartate Aminotransferase To Tyrosine Aminotransferase: Mutant P5. Length = 406 | Back alignment and structure |
|
| >pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate Aminotransferase To Tyrosine Aminotransferase: Mutant P2. Length = 406 | Back alignment and structure |
|
| >pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406 | Back alignment and structure |
|
| >pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae Cytoplasm Length = 412 | Back alignment and structure |
|
| >pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase Ech14, Northeast Structural Genomics Consortium Target Or54 Length = 406 | Back alignment and structure |
|
| >pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Covalently Bound To Pyridoxal Phosphate Length = 420 | Back alignment and structure |
|
| >pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Length = 420 | Back alignment and structure |
|
| >pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase From Leishmania Major Friedlin Length = 420 | Back alignment and structure |
|
| >pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448 | Back alignment and structure |
|
| >pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase From Trypanosoma Brucei Length = 409 | Back alignment and structure |
|
| >pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate Length = 394 | Back alignment and structure |
|
| >pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405 | Back alignment and structure |
|
| >pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From Veillonella Parvula Length = 418 | Back alignment and structure |
|
| >pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus Prevotii Dsm 20548. Length = 413 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397 | Back alignment and structure |
|---|
Score = 424 bits (1092), Expect = e-150
Identities = 113/261 (43%), Positives = 158/261 (60%)
Query: 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS 77
F++V A PI +M F+EDP K+NL G+Y E+G L AV +AE L
Sbjct: 2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 78 ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ 137
YLP+ GL + A L+FGAD P +K+ RV+T+Q L GSG+L++GADFL +++ +
Sbjct: 62 GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
V++S PT+ NH FA AG + TY +YD TNG+ F +L L +G+IVLL
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
HNPTG D T QW+ + ++++ + L+PF D AYQGF M+ DA +R + G LV
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALV 241
Query: 258 AQSYSKTMGLYGERVGALSVV 278
+ S+SK LYGERVG LSV+
Sbjct: 242 SNSFSKIFSLYGERVGGLSVM 262
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420 | Back alignment and structure |
|---|
Score = 422 bits (1087), Expect = e-149
Identities = 120/263 (45%), Positives = 157/263 (59%), Gaps = 1/263 (0%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F V A PI + AF D P K+NLG GVY E+GK LL AVR AE+ V
Sbjct: 23 SLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA 82
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
+ YLPI G+ ++ KL+ G DSP I RV T Q L G+G+L+IGADFL
Sbjct: 83 -GLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLN 141
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
+ V +S P++ NH F AG + Y YYD KTNG++F GML L G IV+L
Sbjct: 142 PKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLH 201
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255
A HNPTG+D QW Q+ ++++ +RL+PF D AYQGF +++ADA VR+F A
Sbjct: 202 ACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNV 261
Query: 256 LVAQSYSKTMGLYGERVGALSVV 278
V+ S+SK+ LYGERVGALS++
Sbjct: 262 FVSSSFSKSFSLYGERVGALSII 284
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401 | Back alignment and structure |
|---|
Score = 420 bits (1082), Expect = e-148
Identities = 120/265 (45%), Positives = 172/265 (64%), Gaps = 3/265 (1%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S + V PI V AF+ D + K+NLG G YR + GKP +LN VR+AE ++
Sbjct: 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
DKEYLPI GL +F + SA+L G +S A K R TVQ +SG+GSLR+GA+FL + +
Sbjct: 62 -KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 120
Query: 136 -YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194
+ VYL +P++GNH F AGL ++ Y YYDPKT LDF G ++D+ P +I+LL
Sbjct: 121 KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180
Query: 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253
A HNPTG+DP +QW+++ +++ + LL +FD AYQGF +++ DA +R F+ G
Sbjct: 181 HACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240
Query: 254 ECLVAQSYSKTMGLYGERVGALSVV 278
+ +++QSY+K MGLYGER GA +V+
Sbjct: 241 DVVLSQSYAKNMGLYGERAGAFTVI 265
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405 | Back alignment and structure |
|---|
Score = 418 bits (1078), Expect = e-148
Identities = 84/265 (31%), Positives = 143/265 (53%), Gaps = 3/265 (1%)
Query: 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN 74
D + I F+ED K+NL GV ++G + ++V A++L+
Sbjct: 2 DKLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTE 61
Query: 75 DLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH 134
+ +K YL G +F+ L+ LIFG +S I++ ++ T+QC+ G+G++ + +FL K
Sbjct: 62 N-YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFL-KM 119
Query: 135 YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194
T+Y++ P Y NH N + G +K +++D +++ L DL P+G+ V+L
Sbjct: 120 LNVETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVIL 179
Query: 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253
Q S +NP ++ + +++I +++ K+ + FD AYQGF N++ D L +R F
Sbjct: 180 QISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI 239
Query: 254 ECLVAQSYSKTMGLYGERVGALSVV 278
V QS+SK M LYGER GAL +V
Sbjct: 240 AFSVCQSFSKNMSLYGERAGALHIV 264
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412 | Back alignment and structure |
|---|
Score = 416 bits (1071), Expect = e-146
Identities = 109/267 (40%), Positives = 155/267 (58%), Gaps = 4/267 (1%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
+ F + ++ + + +D K++LG G YR + GKP +L +V+ AE+L+ ND
Sbjct: 3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND 62
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYL ITGLP +AK+IFG S A++E+RV +VQ LSG+G+L I A F +K +
Sbjct: 63 SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF 122
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
VYLS+PT+ NH F GL TY Y+ +T LD G L + AP G+I +L
Sbjct: 123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLH 182
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVAD--- 251
+ HNPTG+DPT++QW QI + K + FD AYQGF ++D DA VR+ V
Sbjct: 183 SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242
Query: 252 GGECLVAQSYSKTMGLYGERVGALSVV 278
V QS++K G+YGERVG +
Sbjct: 243 VSPVFVCQSFAKNAGMYGERVGCFHLA 269
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412 | Back alignment and structure |
|---|
Score = 414 bits (1066), Expect = e-146
Identities = 131/270 (48%), Positives = 177/270 (65%), Gaps = 7/270 (2%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +V +A + ++ ++A FREDP P K+NLG G YRT++ +P +L VR+ EQ + N+
Sbjct: 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYLPI GL EF +++L G DSPA++E RV VQ L G+G+LRIGA+FLA+ Y
Sbjct: 64 SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 136 Y-----QHTVYLSQPTYGNHPNFFAAAGLA-MKTYHYYDPKTNGLDFQGMLQDLGAAPSG 189
VY+S PT+ NH F AG +++Y Y+D + GLD QG L DL AP
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMF 248
+I +L A HNPTG DPT +QW+QI +M+ + L PFFD AYQGF N++ DA +R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278
V++G E AQS+SK GLY ERVG L+VV
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVV 273
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396 | Back alignment and structure |
|---|
Score = 412 bits (1061), Expect = e-145
Identities = 115/261 (44%), Positives = 158/261 (60%), Gaps = 1/261 (0%)
Query: 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS 77
FE + A PI + FR D P K+NLG GVY+ E GK +L +V++AEQ L+ +
Sbjct: 2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-E 60
Query: 78 ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ 137
K YL I G+PEF + + +L+FG S I + R T Q G+G+LR+ ADFLAK+
Sbjct: 61 TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV 120
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
V++S P++ NH + F +AGL ++ Y YYD + + LDF ++ L A +G +VL
Sbjct: 121 KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 180
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
HNPTGIDPT +QW+ + QL K LP FD AYQGF ++ DA +R F A E +V
Sbjct: 181 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240
Query: 258 AQSYSKTMGLYGERVGALSVV 278
A SYS GLY ERVGA ++V
Sbjct: 241 ASSYSXNFGLYNERVGACTLV 261
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394 | Back alignment and structure |
|---|
Score = 410 bits (1055), Expect = e-144
Identities = 94/261 (36%), Positives = 135/261 (51%), Gaps = 4/261 (1%)
Query: 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS 77
+ A I A+M FR DP K++LG GVY+ G ++ AV AEQ ++
Sbjct: 2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-E 60
Query: 78 ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ 137
K Y ++G PEF K +LI G +K +T+ + G+G+LR +
Sbjct: 61 TTKTYAGLSGEPEFQKAMGELILG---DGLKSETTATLATVGGTGALRQALELARMANPD 117
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
V++S PT+ NH + GL ++TY Y+D +T G+DF+GM DL AA G +VLL
Sbjct: 118 LRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGC 177
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
HNPTG + T QW +I ++ LP D AYQGF ++ DA R+ + E L+
Sbjct: 178 CHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLI 237
Query: 258 AQSYSKTMGLYGERVGALSVV 278
A S SK G+Y ER G L +
Sbjct: 238 AASCSKNFGIYRERTGCLLAL 258
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409 | Back alignment and structure |
|---|
Score = 406 bits (1045), Expect = e-143
Identities = 101/265 (38%), Positives = 146/265 (55%), Gaps = 8/265 (3%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
+ PI + FR DP+ K+NL GVYR + +P +L V+QA
Sbjct: 15 QTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATLGT--- 71
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
+ +Y P+TG+ F + + KL FG A+++ R+++ Q L G+G+LRIG D L +
Sbjct: 72 ---NMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFV 128
Query: 136 -YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194
+ +Y Y NH + FA AG+ + Y YYDP T GL+ GML+ L AP G+++L+
Sbjct: 129 ANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILV 188
Query: 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253
A HNPTG+DPT W Q+ +++ + +PF D AYQGF +D DA R V
Sbjct: 189 HACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP 248
Query: 254 ECLVAQSYSKTMGLYGERVGALSVV 278
+VAQS+SK GLYG R GAL +
Sbjct: 249 NLIVAQSFSKNFGLYGHRCGALHIS 273
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-142
Identities = 111/270 (41%), Positives = 155/270 (57%), Gaps = 7/270 (2%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F + I + + D +P K+NLG G YR E GKP +L AV++AE ++ +D
Sbjct: 23 SVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSD 82
Query: 76 LS-ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH 134
LS +KEY P+ G P F + + L+FG DS A +E R+++ Q LSG+GSL IG +FL
Sbjct: 83 LSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLW 142
Query: 135 YYQHTVYLSQPTYGNHPNFFAAA----GLAMKTYHYYDPKTN-GLDFQGMLQDLGAAPSG 189
+ Y+ T+ NH + + K Y Y +DF +D+ +AP
Sbjct: 143 MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEK 202
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMF 248
+I L A HNP+GID T QW+++ +M+ K+ + FFD AYQGF + +ADA VRMF
Sbjct: 203 SIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMF 262
Query: 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278
V G E LVAQS+SK GLYGER+G L VV
Sbjct: 263 VDAGVEVLVAQSFSKNFGLYGERIGCLHVV 292
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-122
Identities = 61/277 (22%), Positives = 103/277 (37%), Gaps = 21/277 (7%)
Query: 16 SAFEQVARAADIPIYAVM----AAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQL 71
+A + I+ A +E+ +N G EEG + L V++
Sbjct: 8 AAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLS 67
Query: 72 LVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL 131
L + Y PI G+P+F + K FG P E + ++ G+G +
Sbjct: 68 LSDSE--HVGYAPIAGIPDFLCAAEKECFGNFRP---EGHIRSIATAGGTGGIHHLIHNY 122
Query: 132 AKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKT--NGLDFQGMLQDLGAAPSG 189
+ V + +G + + G + TY +D N FQ + +L A +
Sbjct: 123 TEP--GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTN 180
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMR------LKRLLPFFDCAYQGFVMNMDADAL 243
+V+ G+NPTG + W+ I ++ ++ D AY + D
Sbjct: 181 VVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRA 240
Query: 244 PVRMFVADGGECL--VAQSYSKTMGLYGERVGALSVV 278
F E L V S SK +YG+RVGA+ +
Sbjct: 241 FFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGI 277
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 7e-82
Identities = 41/253 (16%), Positives = 92/253 (36%), Gaps = 15/253 (5%)
Query: 35 AFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94
+ + N G+ ++GK +++ L D Y P G+ E L
Sbjct: 40 SQSAEAKSTTYNATIGMATNKDGKMFA-SSLDAMFNDLTPD--EIFPYAPPQGIEELRDL 96
Query: 95 SAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF 154
+ + + +N + + + L + D T+ L + +GN+ F
Sbjct: 97 WQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQ--DDTILLPEHNWGNYKLVF 154
Query: 155 A-AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQ 213
G ++TY +D K +++ L + ++++ +NPTG PT ++
Sbjct: 155 NTRNGANLQTYPIFD-KDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTT 213
Query: 214 IRQLMR-----LKRLLPFFDCAYQGFV---MNMDADALPVRMFVADGGECLVAQSYSKTM 265
I + ++ +++ D AY G + + + ++ + +K
Sbjct: 214 IVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF 273
Query: 266 GLYGERVGALSVV 278
+G RVG ++
Sbjct: 274 FAWGFRVGFMTFG 286
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
+ P+Y + G ++T+ DF+ + +
Sbjct: 107 EEIGYVHPSYSYYGTLAEVQGARVRTFGLTG------DFRIAGFPERYEGKVFFL---TT 157
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
+ P G + E I +L R + D Y F +++AL V +V
Sbjct: 158 PNAPLG---PSFPLEYIDELARRCAGMLVLDETYAEFA---ESNALE---LVRRHENVVV 208
Query: 258 AQSYSKTMGLYGERVG 273
++ SK+ L G R+G
Sbjct: 209 TRTLSKSYSLAGMRIG 224
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 21/150 (14%), Positives = 56/150 (37%), Gaps = 13/150 (8%)
Query: 127 GAD---FLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL 183
GA L+ ++ + + P+Y + G+ Y + +D++ ++
Sbjct: 86 GASEIIELSISLFEKILII-VPSYAEYEINAKKHGV--SVVFSYLDENMCIDYEDIIS-- 140
Query: 184 GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243
V++ + +NP G +++ + +L K+ D A+ F + + +
Sbjct: 141 -KIDDVDSVII-GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFV 198
Query: 244 PVRMFVADGGECLVAQSYSKTMGLYGERVG 273
+ + + ++ +K + G R G
Sbjct: 199 G---EIKNYSCLFIIRAMTKFFAMPGIRFG 225
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 280 | |||
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.98 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.98 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.98 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.98 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.98 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.97 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.97 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.97 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.97 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.97 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.97 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.97 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.97 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.97 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.97 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.97 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.94 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.96 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.96 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.96 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.96 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.94 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.94 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.94 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.93 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.92 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.92 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.91 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.91 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.91 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.91 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.9 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.9 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.9 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.9 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.9 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.9 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.9 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.89 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.89 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.89 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.89 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.89 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.89 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.89 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.88 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.88 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.88 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.88 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.88 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.88 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.88 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.88 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.87 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.87 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.87 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.87 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.87 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.87 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.87 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.86 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.86 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.86 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.86 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.86 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.86 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.86 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.86 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.86 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.86 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.86 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.85 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.85 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.85 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.85 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.85 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.85 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.85 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.85 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.85 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.85 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.84 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.84 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.84 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.84 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.84 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.84 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.84 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.84 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.84 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.83 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.83 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.83 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.83 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.83 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.83 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.82 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.82 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.82 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.82 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.82 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.82 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.82 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.82 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.82 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.81 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.81 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.81 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.81 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.81 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.81 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.81 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.81 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.81 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.8 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.8 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.8 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.8 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.8 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.8 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.8 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.79 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.79 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.79 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.79 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.79 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.79 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.79 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.79 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.78 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.78 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.78 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.77 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.77 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.77 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.76 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.76 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.76 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.75 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.75 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.75 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.74 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.74 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.74 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.74 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.73 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.73 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.73 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.72 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.71 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.71 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.7 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.7 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.69 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.69 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.67 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.67 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.64 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.61 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.59 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.38 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.59 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.57 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.56 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.55 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.53 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.49 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.99 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.94 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 98.93 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 98.91 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 98.77 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.58 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.57 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 98.45 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 98.43 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 97.95 |
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=341.43 Aligned_cols=259 Identities=31% Similarity=0.542 Sum_probs=216.4
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
|+|.+++..++++++++.+.++....+++|||++|.|.|+++.+++++.++++.. +..+....++|.+..|.++||+++
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai 81 (405)
T 3k7y_A 3 KLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT 81 (405)
T ss_dssp CGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred chhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence 5899999999999999999998777789999999997777777778888888776 531133467899999999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc--CCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCC
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY--YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNG 173 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~--~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 173 (280)
++|+.+.+...+.++++.+++|.|+++|+.++ +..+.. + |+|++++|+|..|...++..|++++.+|+.++++++
T Consensus 82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~--~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 158 (405)
T 3k7y_A 82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVL--LEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLID 158 (405)
T ss_dssp HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHH--HHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTE
T ss_pred HHHHcCCCCccccccceEEEEcCchHHHHHHH--HHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCC
Confidence 99998887766667765333499999999999 555555 8 999999999999999999999999999985555689
Q ss_pred cCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc-CCChhHHHHhhhcC
Q 023599 174 LDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM-DADALPVRMFVADG 252 (280)
Q Consensus 174 ~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~ 252 (280)
+|++.+++++.+.++.++++++++||||||.+++.+++++|+++|++|+++||+||+|.+|.++. ..+..++..+.+..
T Consensus 159 ~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~ 238 (405)
T 3k7y_A 159 INYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKN 238 (405)
T ss_dssp ECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTT
T ss_pred cCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcC
Confidence 99999999997643333455555569999999999999999999999999999999999999852 22344566665556
Q ss_pred CeEEEEecccccccccccccceEEEE
Q 023599 253 GECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 253 ~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++|+++||||+|+++|||+||++++
T Consensus 239 ~~~i~~~S~SK~~~l~GlRiG~~~~~ 264 (405)
T 3k7y_A 239 IAFSVCQSFSKNMSLYGERAGALHIV 264 (405)
T ss_dssp CCEEEEEECTTTSCCTTTTEEEEEEE
T ss_pred CcEEEEeeCCccCCCccccceEEEEE
Confidence 79999999999999999999999763
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=332.17 Aligned_cols=259 Identities=42% Similarity=0.728 Sum_probs=220.3
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
+.|++++..|+++|+.+++.++.+.++ +|||++|.|.|++|.+++.++++++.+.+.. ....++|.|..|+++||+++
T Consensus 19 ~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~-~~~~~~Y~p~~G~p~lr~ai 96 (420)
T 4h51_A 19 ERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLD-MNLDYEYLPISGYQPFIDEA 96 (420)
T ss_dssp HHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHH-TTCCCCCCCTTCCHHHHHHH
T ss_pred HHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhc-CCCCCCCCCcCChHHHHHHH
Confidence 468889999999999999999876654 9999999999999999999999999888763 44467899999999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHH--hhcCCCEEEEeCCCCCChHHHHHHcCCe-eeEEEeecCCCC
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLA--KHYYQHTVYLSQPTYGNHPNFFAAAGLA-MKTYHYYDPKTN 172 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~--~~~~Gd~Vli~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~~ 172 (280)
++++++.... .+++..++|.||++|+..++.++. +..|||+|++++|+|++|..+++..|++ +..++.++++++
T Consensus 97 a~~~~g~~~~---~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~ 173 (420)
T 4h51_A 97 VKIIYGNTVE---LENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTV 173 (420)
T ss_dssp HHHHHC---C---GGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGT
T ss_pred HHHhcCCCcc---ccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccccc
Confidence 9999887543 366777789999999988854443 3469999999999999999999999997 556666566678
Q ss_pred CcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc-CCChhHHHHhhhc
Q 023599 173 GLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM-DADALPVRMFVAD 251 (280)
Q Consensus 173 ~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~ 251 (280)
.+|++.+.+.+...+++.+++++++||||||.+++.+++++|+++|+++++++|+||+|++|.++. ..+...++.+.+.
T Consensus 174 ~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~ 253 (420)
T 4h51_A 174 SLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARR 253 (420)
T ss_dssp EECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred CCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhh
Confidence 899999999998777777899999999999999999999999999999999999999999999853 2233455556667
Q ss_pred CCeEEEEecccccccccccccceEEEEc
Q 023599 252 GGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 252 ~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
..+++++.||||+|+++|||+||++++.
T Consensus 254 ~~~~i~~~s~SK~~~~~G~RvG~~~~~~ 281 (420)
T 4h51_A 254 GIEVLLAQSFSKNMGLYSERAGTLSLLL 281 (420)
T ss_dssp TCCCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred CceEEEEeccccccccccCceEEEEecc
Confidence 7899999999999999999999998864
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=319.23 Aligned_cols=266 Identities=44% Similarity=0.750 Sum_probs=223.0
Q ss_pred cCCCCccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCH
Q 023599 10 KESDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLP 89 (280)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~ 89 (280)
..++.|++++++...++++++.+...+.....+++|||+.|.+.++++.+++.+.+.++..+... .....+|.+..|.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~-~~~~~~Y~~~~g~~ 95 (420)
T 4f4e_A 17 QGPGSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVE-AGLPRGYLPIDGIA 95 (420)
T ss_dssp -----CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-TCCCCCCCCTTCCH
T ss_pred cCccccCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhc-cCCCCCCCCCCCcH
Confidence 44567889999999999999999988876667799999999765666666666777666666543 33456899999999
Q ss_pred HHHHHHHHHHhCCCCccccCC--CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 90 EFNKLSAKLIFGADSPAIKEN--RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~~~~~~~--~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
+||+++++++.+.....+.++ +|++ |+|+++|+.++.++++++.+||+|++++|+|..|...++..|++++.+++.
T Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~~~i~~--t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~ 173 (420)
T 4f4e_A 96 AYDASVQKLLLGDDSPLIAAGRVVTAQ--ALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYY 173 (420)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEE--EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECE
T ss_pred HHHHHHHHHhcCCCccccccCceEEEE--CCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeee
Confidence 999999999988776555677 7777 999999999996666778999999999999999999999999999999985
Q ss_pred cCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 168 DPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 168 ~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
+++++++|++.+++.+++.+.+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++...+..++..
T Consensus 174 ~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 253 (420)
T 4f4e_A 174 DAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRL 253 (420)
T ss_dssp ETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHH
T ss_pred ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHH
Confidence 55678899999999998654455799999999999999999999999999999999999999999999864334566666
Q ss_pred hhhcCCeEEEEecccccccccccccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.+..+++++++||||+||++|+|+||++++
T Consensus 254 ~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~ 284 (420)
T 4f4e_A 254 FAAANLNVFVSSSFSKSFSLYGERVGALSII 284 (420)
T ss_dssp HHHTTCCEEEEEECTTTTTCGGGCEEEEEEE
T ss_pred HHhcCCCEEEEEeCCccCcCcCCCcEEEEEE
Confidence 6666789999999999999999999999753
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=312.86 Aligned_cols=262 Identities=46% Similarity=0.851 Sum_probs=222.3
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
|+|++++..++++++..++.++.+..+++|+|+.|.|+|+.+++.+.+.+.++...+... ....+|.+..|.++||+++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~~i 80 (401)
T 7aat_A 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK-KMDKEYLPIAGLADFTRAS 80 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-TCCCCCCCTTCCHHHHHHH
T ss_pred ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhccc-ccccCCCCCCCCHHHHHHH
Confidence 689999999999999999988877777899999999878877777778888877776532 2367799999999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHH-HhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCc
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL-AKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGL 174 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~-~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 174 (280)
++++.+.++..+++++|++++|+||++++.++...+ .++.+||+|++++|+|..|...++..|++++.+++.+++++++
T Consensus 81 a~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (401)
T 7aat_A 81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL 160 (401)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred HHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCcc
Confidence 999988877777789997767999999999883322 2347999999999999999999999999999999854556899
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhhcCC
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVADGG 253 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~ 253 (280)
|++.+++.+.+.+++.+++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. .+..++..+.+...
T Consensus 161 d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~ 240 (401)
T 7aat_A 161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240 (401)
T ss_dssp CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred CHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCC
Confidence 99999998876444567999999999999999999999999999999999999999999988531 12344555556678
Q ss_pred eEEEEecccccccccccccceEEEE
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++|+++||||+||++|+|+||++++
T Consensus 241 ~~i~~~S~sK~~~~~G~RiG~l~~~ 265 (401)
T 7aat_A 241 DVVLSQSYAKNMGLYGERAGAFTVI 265 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEE
T ss_pred cEEEEecCCcccccccCceEEEEEE
Confidence 9999999999999999999999874
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=318.27 Aligned_cols=264 Identities=40% Similarity=0.696 Sum_probs=226.3
Q ss_pred CCCccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhc-cCCCCCCCCCCCCCHH
Q 023599 12 SDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN-DLSADKEYLPITGLPE 90 (280)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~G~~~ 90 (280)
...|++|.+++..++++++.+++.++.+..+.+|+|++|.|.|+++++++.+.+.++.+.+.+ +.....+|.+..|.++
T Consensus 19 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~ 98 (448)
T 3meb_A 19 PGSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPL 98 (448)
T ss_dssp ---CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHH
T ss_pred cchhhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHH
Confidence 345889999999999999999999987777779999999998888888899999888777651 1234678999999999
Q ss_pred HHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeeeEEEe
Q 023599 91 FNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMKTYHY 166 (280)
Q Consensus 91 lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~~v~~ 166 (280)
||+++++++++....++.+++|++++|+||++|+++++.+++++.+||+|++++|+|..|...++ ..|++++.+++
T Consensus 99 lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~ 178 (448)
T 3meb_A 99 FLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY 178 (448)
T ss_dssp HHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECC
T ss_pred HHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEec
Confidence 99999999977665545578999888999999999865477788899999999999999999999 99999999998
Q ss_pred ecCC-CCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc-CCChhH
Q 023599 167 YDPK-TNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM-DADALP 244 (280)
Q Consensus 167 ~~~~-~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~ 244 (280)
.+++ ++.+|++.+++++.+.+.+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|++|.++. ..+.++
T Consensus 179 ~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~ 258 (448)
T 3meb_A 179 LRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFA 258 (448)
T ss_dssp BCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred cccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchh
Confidence 5555 68999999999998654456788999999999999999999999999999999999999999998852 123455
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
+..+.+...++|+++||||+||++|+|+||+
T Consensus 259 ~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l 289 (448)
T 3meb_A 259 VRMFVDAGVEVLVAQSFSKNFGLYGERIGCL 289 (448)
T ss_dssp HHHHHHTTCCEEEEEECTTTSCCGGGCCEEE
T ss_pred HHHHhhcCCcEEEEecccccCCCccccceee
Confidence 6666566789999999999999999999998
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=300.17 Aligned_cols=259 Identities=42% Similarity=0.733 Sum_probs=218.1
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHH-HhccCCCCCCCCCCCCCHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQL-LVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
+|++++..+++.++.+.+.+..+..+++|+|+.|.+.++++.+++.+.+.++..+ ... .....+|.+..|.++||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~-~~~~~~y~~~~g~~~lr~~l 79 (397)
T 3fsl_A 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ-PHGASLYLPMEGLNCYRHAI 79 (397)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHS-CCCCCCCCCTTCCHHHHHHH
T ss_pred CcccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccC-ccccccCCCCCchHHHHHHH
Confidence 4677888889999999988887777889999999765666666665666666665 542 32356799989999999999
Q ss_pred HHHHhCCCCccccCC--CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCC
Q 023599 96 AKLIFGADSPAIKEN--RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNG 173 (280)
Q Consensus 96 a~~l~~~~~~~~~~~--~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 173 (280)
++++.+.+...++++ +|++ |+|+++++.++.++++++.+||+|+++.|+|..+...++..|++++.+++.++++++
T Consensus 80 a~~~~~~~~~~~~~~~~~i~~--t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (397)
T 3fsl_A 80 APLLFGADHPVLKQQRVATIQ--TLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNG 157 (397)
T ss_dssp HHHHHCTTCHHHHTTCEEEEE--ESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTE
T ss_pred HHHHhcCCcccccccceEEEE--cCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCc
Confidence 999987776555678 7787 999999999996666778899999999999999999999999999999985456788
Q ss_pred cCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 174 LDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 174 ~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
+|++.+++.+.+...+.+++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++......++..+.+..+
T Consensus 158 ~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
T 3fsl_A 158 VRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGL 237 (397)
T ss_dssp ECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTC
T ss_pred CcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCC
Confidence 99999999998654455799999999999999999999999999999999999999999999863334556666656678
Q ss_pred eEEEEecccccccccccccceEEEE
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++++++||||.||++|+|+||++++
T Consensus 238 ~~i~~~S~SK~~~~~G~riG~~~~~ 262 (397)
T 3fsl_A 238 PALVSNSFSKIFSLYGERVGGLSVM 262 (397)
T ss_dssp CEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred CEEEEecccccccCcCCCeeEEEEe
Confidence 9999999999999999999999864
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=301.13 Aligned_cols=259 Identities=39% Similarity=0.703 Sum_probs=201.6
Q ss_pred CCCCccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHH
Q 023599 11 ESDGDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPE 90 (280)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~ 90 (280)
++.--++|++++..++++++.+++.++.+..+++|+|+.|.|++.++++.+.+++.++ . .....+|.+..|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~--~~~~~~y~~~~g~~~ 83 (409)
T 4eu1_A 10 GTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA----T--LGTNMDYAPVTGIAS 83 (409)
T ss_dssp -----------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC----C--CCSCCCCCCTTCCHH
T ss_pred cchhhhHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc----C--ccccccCCCCCCcHH
Confidence 3444578999999999999999988887777899999999987777767776666554 2 334678999999999
Q ss_pred HHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHH-HhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC
Q 023599 91 FNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL-AKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP 169 (280)
Q Consensus 91 lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~-~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~ 169 (280)
||+++++++.+....++++++|..++|.||++++.++..++ .++.+||+|++++|+|..+...++..|++++.+++.++
T Consensus 84 lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 163 (409)
T 4eu1_A 84 FVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDP 163 (409)
T ss_dssp HHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEET
T ss_pred HHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecC
Confidence 99999999977766555578886556999999999874333 34568999999999999999999999999999998555
Q ss_pred CCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHh
Q 023599 170 KTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMF 248 (280)
Q Consensus 170 ~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~ 248 (280)
+++.+|++.+++.+++.+++.+++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.. .+..++..+
T Consensus 164 ~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 243 (409)
T 4eu1_A 164 ATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHL 243 (409)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred cCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHH
Confidence 6788999999999976444456888899999999999999999999999999999999999999998631 123445555
Q ss_pred hhcCCeEEEEecccccccccccccceE
Q 023599 249 VADGGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
.+...++|+++||||+||++|+|+||+
T Consensus 244 ~~~~~~~i~~~S~SK~~g~~G~riG~~ 270 (409)
T 4eu1_A 244 VDMVPNLIVAQSFSKNFGLYGHRCGAL 270 (409)
T ss_dssp HTTSSCCEEEEECTTTSSCGGGCCEEE
T ss_pred HhhCCcEEEEecCcccccCccCCceEE
Confidence 556679999999999999999999998
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=293.20 Aligned_cols=261 Identities=41% Similarity=0.723 Sum_probs=215.0
Q ss_pred ccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHH-HhccCCCCCCCCCCCCCHHHHH
Q 023599 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQL-LVNDLSADKEYLPITGLPEFNK 93 (280)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~G~~~lr~ 93 (280)
||+|+++...++.++..+.+.+....++++|+|+.|.|+|+++.+.+.+.+.++..+ ... ....++|.+..|.++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~~y~~~~g~~~lr~ 80 (412)
T 1yaa_A 2 ATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND-SSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp TTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTC-TTCCCCCCCTTCCHHHHH
T ss_pred cchhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcC-cccccCCCCCCCcHHHHH
Confidence 678889988888888888888866556789999999987887776777777777766 552 233567988999999999
Q ss_pred HHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCC
Q 023599 94 LSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNG 173 (280)
Q Consensus 94 ~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~ 173 (280)
++++++.+..+..+++++|++++|+||++|++++.+++..+.+||+|++++|+|..+...++..|++++.+++.++++++
T Consensus 81 ~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 160 (412)
T 1yaa_A 81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCc
Confidence 99999977666556678888767999999999986556666799999999999999999999999999999974344678
Q ss_pred cCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhhcC
Q 023599 174 LDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVADG 252 (280)
Q Consensus 174 ~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~ 252 (280)
+|++.+++++.+++.+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ....++..+....
T Consensus 161 ~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T 1yaa_A 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcC
Confidence 999999999976533345777799999999999999999999999999999999999999988520 1223444444444
Q ss_pred C---eEEEEecccccccccccccceEE
Q 023599 253 G---ECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 253 ~---~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
. ++++++||||.||++|+|+||++
T Consensus 241 ~~~~~~i~~~s~sK~~~~~GlriG~~~ 267 (412)
T 1yaa_A 241 STVSPVFVCQSFAKNAGMYGERVGCFH 267 (412)
T ss_dssp TTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred CCCcceEEEeccCCCCCCcCCcceEEE
Confidence 5 89999999999998899999998
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=288.23 Aligned_cols=262 Identities=49% Similarity=0.878 Sum_probs=214.6
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
++|+++...++.+++.+........++++|+|+.|.|.+.++.+.+.+.+.++..+...+....++|.+..|.++||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred chhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence 47888888888889888888765556789999999976666555666777777666552222356798899999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCC-----CEEEEeCCCCCChHHHHHHcCCe-eeEEEeecC
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ-----HTVYLSQPTYGNHPNFFAAAGLA-MKTYHYYDP 169 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~G-----d~Vli~~P~y~~~~~~~~~~G~~-~~~v~~~~~ 169 (280)
++++.+.++..+.+++|++++|+||++|++++.++...+.+| |+|+++.|+|..+...++..|++ ++.+++..+
T Consensus 84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 163 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT 163 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence 999977666556678887667999999999996555667899 99999999999999999999999 999998434
Q ss_pred CCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHh
Q 023599 170 KTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMF 248 (280)
Q Consensus 170 ~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~ 248 (280)
+++.+|++.+++++.+...+.+++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ....++..+
T Consensus 164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 243 (412)
T 1ajs_A 164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243 (412)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHH
Confidence 5678999999999976433456888899999999999999999999999999999999999999988520 123344545
Q ss_pred hhcCCeEEEEecccccccccccccceEEE
Q 023599 249 VADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
....+++++++||||.||++|+|+||+++
T Consensus 244 ~~~~~~~i~~~s~sK~~~~~G~riG~~~~ 272 (412)
T 1ajs_A 244 VSEGFELFCAQSFSKNFGLYNERVGNLTV 272 (412)
T ss_dssp HHTTCCEEEEEECTTTSCCGGGCEEEEEE
T ss_pred hccCCcEEEEEecccccCCCCcceEEEEE
Confidence 44567899999999999988999999987
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=287.91 Aligned_cols=260 Identities=44% Similarity=0.771 Sum_probs=195.0
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSA 96 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia 96 (280)
+|+++...++..++.....+....+++.|||+.|.+.+.++...+.+.+.++..+... ....++|.+..|.++||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~y~~~~g~~~lr~~la 79 (396)
T 2q7w_A 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLE-NETTKNYLGIDGIPEFGRCTQ 79 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHH-HCCCCCCCCTTCCHHHHHHHH
T ss_pred CccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcC-cccccCCCCCCCCHHHHHHHH
Confidence 3566777777777777666654445678999999975655544555666666655432 223567989999999999999
Q ss_pred HHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH
Q 023599 97 KLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 97 ~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 176 (280)
+++.+.+...+++++|++++|+||++|++++.+++..+.+||+|+++.|+|..+...++..|++++.+++..++++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 159 (396)
T 2q7w_A 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDF 159 (396)
T ss_dssp HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCH
Confidence 99977665445678887556999999999994444445799999999999999999999999999999984335678999
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+++++.+.+.+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++......++..+....++++
T Consensus 160 ~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (396)
T 2q7w_A 160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEE
Confidence 99999997653345688889999999999999999999999999999999999999998852112334454544457899
Q ss_pred EEecccccccccccccceEEE
Q 023599 257 VAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+++||||.||++|+|+||+++
T Consensus 240 ~~~s~sK~~~~~G~riG~~~~ 260 (396)
T 2q7w_A 240 VASSYSXNFGLYNERVGACTL 260 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEE
T ss_pred EEEeccccccccccccceEEE
Confidence 999999999999999999986
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=285.31 Aligned_cols=241 Identities=17% Similarity=0.131 Sum_probs=188.9
Q ss_pred cccccCCChHHHHHHHhhc--CCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHH
Q 023599 20 QVARAADIPIYAVMAAFRE--DPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAK 97 (280)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~ 97 (280)
++...++..+.++.....+ ..+++.|+|+.|++ +. +.++...++..+.+. .. ..+|.+..|.++||+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~--~~-~~~y~~~~g~~~lr~~ia~ 79 (385)
T 1b5p_A 7 RVQAMKPSATVAVNAKALELRRQGVDLVALTAGEP-DF---DTPEHVKEAARRALA--QG-KTKYAPPAGIPELREALAE 79 (385)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC-SS---CCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHHHH
T ss_pred HHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCC-CC---CCCHHHHHHHHHHHh--cC-CCCCCCCCCCHHHHHHHHH
Confidence 3444555556555443321 13467899999985 22 233333343334343 22 3568888899999999999
Q ss_pred HHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHH
Q 023599 98 LIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 98 ~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 177 (280)
++...++..+++++|++ |+|+++++.++ +.+++.+||+|+++.|+|..+...++..|++++.+++..++++.+|++
T Consensus 80 ~~~~~~g~~~~~~~i~~--t~g~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 155 (385)
T 1b5p_A 80 KFRRENGLSVTPEETIV--TVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPE 155 (385)
T ss_dssp HHHHTTCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHH
T ss_pred HHHHHhCCCCChHHEEE--cCChHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHH
Confidence 99766555566789988 99999999999 777789999999999999999999999999999999832246789999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
.+++++.++ .+++++++||||||.+++.+++++|+++|++||++||+||+|.++.++. ...++..+.+ +++++
T Consensus 156 ~l~~~l~~~---~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~--~~~i~ 228 (385)
T 1b5p_A 156 RVRRAITPR---TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG--EHFSPGRVAP--EHTLT 228 (385)
T ss_dssp HHHTTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS--CCCCGGGTCT--TTEEE
T ss_pred HHHHhcCCC---CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC--CCCCHHHcCC--CCEEE
Confidence 999988654 3478889999999999999999999999999999999999999998853 2223344422 68999
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++||||.||++|+|+||+++.
T Consensus 229 ~~s~SK~~~~~G~RiG~~~~~ 249 (385)
T 1b5p_A 229 VNGAAKAFAMTGWRIGYACGP 249 (385)
T ss_dssp EEESTTTTTCGGGCCEEEECC
T ss_pred EEechhhcCCcccceEEEEeC
Confidence 999999999999999999874
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=279.61 Aligned_cols=257 Identities=37% Similarity=0.634 Sum_probs=204.6
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSA 96 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia 96 (280)
+|.++...++..++++...+....+++.|+|+.|.|.+.++.+.+.+.+.++..+... ....++|.+..|.++||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~y~~~~g~~~lr~~la 79 (394)
T 2ay1_A 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLE-TETTKTYAGLSGEPEFQKAMG 79 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-HCCCCCCCCSSCCHHHHHHHH
T ss_pred CCccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcC-CcccCCCCCCCCcHHHHHHHH
Confidence 3677788888888888877765556789999999975555544566667666666542 223567988899999999999
Q ss_pred HHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH
Q 023599 97 KLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 97 ~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 176 (280)
+++.+.. .++++|++++|+||++|++++.+.+..+.+||+|+++.|+|..+...++..|++++.+++..++++.+|+
T Consensus 80 ~~~~~~~---~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 156 (394)
T 2ay1_A 80 ELILGDG---LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF 156 (394)
T ss_dssp HHHHGGG---CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred HHHhCCC---CCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCH
Confidence 9985432 1457877656999999999994333333499999999999999999999999999999984335678999
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+++++.+.+.+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++......++..+....++++
T Consensus 157 ~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 236 (394)
T 2ay1_A 157 EGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVL 236 (394)
T ss_dssp HHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEE
Confidence 99999998653345678889999999999999999999999999999999999999998752112334444544456899
Q ss_pred EEecccccccccccccceEEE
Q 023599 257 VAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+++||||.||++|+|+||+++
T Consensus 237 ~~~s~sK~~~~~G~riG~~~~ 257 (394)
T 2ay1_A 237 IAASCSKNFGIYRERTGCLLA 257 (394)
T ss_dssp EEEECTTTTTCGGGCEEEEEE
T ss_pred EEEeccCCCcCcCCccceEEE
Confidence 999999999999999999987
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=282.51 Aligned_cols=250 Identities=15% Similarity=0.163 Sum_probs=188.5
Q ss_pred ccccccccCCChHHHHHHHhhcCCC--CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPS--PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ 94 (280)
.++.+...+.++|+.+.+.++.+.. .++|+|+.|.+ +..+...+.+.+.++..+... .....+|.+..|.++||++
T Consensus 27 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~-~~~~~~y~~~~g~~~lr~~ 104 (427)
T 3dyd_A 27 RPSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALD-SGKYNGYAPSIGFLSSREE 104 (427)
T ss_dssp CCCC----------------CCCCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHH-HCCSSSCCCTTCCHHHHHH
T ss_pred chhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHh-cCcCCCCCCCCCcHHHHHH
Confidence 4466666677788888877765443 46799999996 432333455555555555442 2334679899999999999
Q ss_pred HHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCc
Q 023599 95 SAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGL 174 (280)
Q Consensus 95 ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 174 (280)
+++++.+. +..+.+++|++ |+||++|+.++ +..++.+||+|+++.|+|..+...++..|++++.+++.+++++.+
T Consensus 105 la~~~~~~-~~~~~~~~v~~--t~g~t~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 179 (427)
T 3dyd_A 105 IASYYHCP-EAPLEAKDVIL--TSGCSQAIDLC--LAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEI 179 (427)
T ss_dssp HHHHHCBT-TBCCCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEE
T ss_pred HHHHHhhc-CCCCChHHEEE--ecCcHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCC
Confidence 99998765 45566789988 99999999999 677788999999999999999999999999999999854456889
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE 254 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 254 (280)
|++.+++++.++ ..++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+ +...+
T Consensus 180 d~~~l~~~l~~~---~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~-~~~~~~~~-~~~~~ 254 (427)
T 3dyd_A 180 DLKQLEYLIDEK---TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC-KYEPLATL-STDVP 254 (427)
T ss_dssp CHHHHHSSCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC-CCCCGGGG-CSSCC
T ss_pred CHHHHHHHhccC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC-cCccHHHh-CCCCc
Confidence 999999988654 34788899999999999999999999999999999999999999988532 22233333 33457
Q ss_pred EEEEecccccccccccccceEEEE
Q 023599 255 CLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 255 ~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++++||||.|+++|+|+||+++.
T Consensus 255 vi~~~S~sK~~~~~G~riG~~~~~ 278 (427)
T 3dyd_A 255 ILSCGGLAKRWLVPGWRLGWILIH 278 (427)
T ss_dssp EEEEEESTTTSSCGGGCCEEEEEE
T ss_pred EEEEeeccccCCCcCcceEEEEec
Confidence 999999999999999999999986
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=281.16 Aligned_cols=248 Identities=21% Similarity=0.306 Sum_probs=193.7
Q ss_pred ccccCCChHHHHHHHhhcC----CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHH
Q 023599 21 VARAADIPIYAVMAAFRED----PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSA 96 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia 96 (280)
.....+..++++.++++.. .+.++|+|+.|.|.+.++...+++.+.++.+++. .....+|.+..|.++||++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~--~~~~~~y~~~~g~~~lr~~ia 90 (418)
T 3rq1_A 13 KGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLS--DSEHVGYAPIAGIPDFLCAAE 90 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCC--HHHHHSCCCTTCCHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhc--ccccCCCCCCCChHHHHHHHH
Confidence 3344556677666554322 2357999999998777777777788877766543 112457999999999999999
Q ss_pred HHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH
Q 023599 97 KLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 97 ~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 176 (280)
+++.+..+.. .+++|++ |+|+++++.++ +.+++.+||+|++++|+|..|...++..|++++.+++ +++++.+|+
T Consensus 91 ~~~~~~~~~~-~~~~i~~--t~g~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~ 164 (418)
T 3rq1_A 91 KECFGNFRPE-GHIRSIA--TAGGTGGIHHL--IHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSL-FDEHNNFNH 164 (418)
T ss_dssp HHHHGGGCCS-SEEEEEE--ESHHHHHHHHH--HHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECS-BCTTSSBCH
T ss_pred HHHhcccCcc-ccccEEE--CCchHHHHHHH--HHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEee-eCCCCCcCH
Confidence 9986654321 1237887 99999999999 7788899999999999999999999999999999998 444578999
Q ss_pred HHHHHHHhcC--CCCcEEEEecCC-CCCCCCCCCHHHHHHHHHHHH------hCCceeEEcccCCCcccCcCCChhHH-H
Q 023599 177 QGMLQDLGAA--PSGAIVLLQASG-HNPTGIDPTAQQWEQIRQLMR------LKRLLPFFDCAYQGFVMNMDADALPV-R 246 (280)
Q Consensus 177 ~~l~~~~~~~--~~~~~~v~~~~p-~NPTG~~~~~~~l~~i~~~~~------~~~~~ii~De~y~~~~~~~~~~~~~~-~ 246 (280)
+.+++++.+. ++.+.++++++| |||||.+++.+++++|+++|+ +|++++|+||+|.+|.++.. ...++ .
T Consensus 165 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~ 243 (418)
T 3rq1_A 165 EAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKD-EVRAFFN 243 (418)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHH-HHHGGGG
T ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChH-HHHHHHH
Confidence 9999999752 112347888999 999999999999999999999 89999999999999987531 11121 1
Q ss_pred HhhhcCCe--EEEEecccccccccccccceEEE
Q 023599 247 MFVADGGE--CLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 247 ~~~~~~~~--~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
...+..++ +|+++||||+||++|+|+||+++
T Consensus 244 ~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~ 276 (418)
T 3rq1_A 244 KFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIG 276 (418)
T ss_dssp GGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEE
T ss_pred HHHhcCCCceEEEEEeCCCCCcCcCCcceEEEE
Confidence 12222344 68999999999999999999987
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=275.41 Aligned_cols=222 Identities=16% Similarity=0.183 Sum_probs=179.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.++++|+|+.|.+ +.+ .+....+++.+.+. .....+|.+..|.++||+++++++....+..+++++|++ |+|
T Consensus 55 ~~~~~i~l~~g~~-~~~---~~~~v~~a~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~--t~G 126 (447)
T 3b46_A 55 QGRELINLGQGFF-SYS---PPQFAIKEAQKALD--IPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTV--TTG 126 (447)
T ss_dssp TTSCCEECCCCSC-SSC---CCHHHHHHHHHHTT--SGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEE--ESH
T ss_pred cCCCeEEccCCCC-CCC---CCHHHHHHHHHHHh--CcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEE--eCC
Confidence 4568999999986 332 33333343333333 212457988899999999999998766555556688888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC-----------CCCcCHHHHHHHHhcCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK-----------TNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~-----------~~~~d~~~l~~~~~~~~~ 188 (280)
+++|+.++ +.+++.+||+|++++|+|..+...++..|++++.+++. ++ ++.+|++.|++++.++
T Consensus 127 ~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 201 (447)
T 3b46_A 127 ANEGILSC--LMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPIN-PPKELDQRNTRGEEWTIDFEQFEKAITSK-- 201 (447)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEE-CCGGGGTSCBCSTTSEECHHHHHTTCCTT--
T ss_pred HHHHHHHH--HHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCC-CccccccccccccCcccCHHHHHHhhccC--
Confidence 99999999 77778999999999999999999999999999999983 33 5679999999988643
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh-hhcCCeEEEEecccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF-VADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~ 267 (280)
.+++++++||||||.+++.+++++|+++|++||++||+||+|.++.++. ...++..+ .+..+++++++|+||.|++
T Consensus 202 -~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 278 (447)
T 3b46_A 202 -TKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD--SFTRIATLSPEIGQLTLTVGSAGKSFAA 278 (447)
T ss_dssp -EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS--CCCCGGGSCHHHHTTEEEEEEHHHHTTC
T ss_pred -CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC--CCcCHHHcCCCCCCcEEEEecCchhcCC
Confidence 3478888999999999999999999999999999999999999998853 22223333 2334689999999999999
Q ss_pred cccccceEEE
Q 023599 268 YGERVGALSV 277 (280)
Q Consensus 268 ~G~RvG~~v~ 277 (280)
+|||+||+++
T Consensus 279 ~G~riG~~~~ 288 (447)
T 3b46_A 279 TGWRIGWVLS 288 (447)
T ss_dssp TTSCCEEEEC
T ss_pred cchhhEEEEe
Confidence 9999999987
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=274.72 Aligned_cols=249 Identities=18% Similarity=0.149 Sum_probs=195.1
Q ss_pred CChHHHHHHHhhcC----CC----CCeeEeecceeecCCCC-------------------------ccchHHHHHHHHHH
Q 023599 26 DIPIYAVMAAFRED----PS----PMKLNLGFGVYRTEEGK-------------------------PLLLNAVRQAEQLL 72 (280)
Q Consensus 26 ~~~~~~~~~~~~~~----~~----~~~i~l~~g~~~~~~~~-------------------------~~~~~~~~~~~~~~ 72 (280)
.+++...+++++.. .+ ..+|++.+|.+...+.. .+|.+.++++.+.+
T Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~i~~~~~~~~~p~~~~~~a~~~l 119 (500)
T 3tcm_A 40 RGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQIL 119 (500)
T ss_dssp GSHHHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGGGGCTTHHHHSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChhhcCCCCCcHHHHHHHhhcCcccccCCCCcccCCHHHHHHHHHHH
Confidence 34565555554322 12 37899999987332221 15666777776666
Q ss_pred hccCC-CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh-cCCCEEEEeCCCCCCh
Q 023599 73 VNDLS-ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH-YYQHTVYLSQPTYGNH 150 (280)
Q Consensus 73 ~~~~~-~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~-~~Gd~Vli~~P~y~~~ 150 (280)
....+ ....|.+..|.++||+++++++...++..+.+++|++ |+|+++++.++ +..++ .+||+|+++.|+|..|
T Consensus 120 ~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~--~~~l~~~~gd~Vlv~~p~y~~~ 195 (500)
T 3tcm_A 120 AMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFL--TDGASPGVHLM--MQLLIRNEKDGILVPIPQYPLY 195 (500)
T ss_dssp TTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEE--ESSSHHHHHHH--HHHHCCSTTEEEEEEESCCTHH
T ss_pred HcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEE--cCCHHHHHHHH--HHHHcCCCCCEEEEeCCCcHhH
Confidence 53222 4678999999999999999998765555566789988 99999999999 77777 7999999999999999
Q ss_pred HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE
Q 023599 151 PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF 227 (280)
Q Consensus 151 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~ 227 (280)
...++..|++++.+++.++.++.+|++.|++++++. ..+.++++++|||||||.+++.+++++|+++|+++++++|+
T Consensus 196 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~ 275 (500)
T 3tcm_A 196 SASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLA 275 (500)
T ss_dssp HHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 999999999999999944446899999999999762 11344777889999999999999999999999999999999
Q ss_pred cccCCCcccCcCCChhHHHHhhh------cCCeEEEEecccccc-cccccccceEEEE
Q 023599 228 DCAYQGFVMNMDADALPVRMFVA------DGGECLVAQSYSKTM-GLYGERVGALSVV 278 (280)
Q Consensus 228 De~y~~~~~~~~~~~~~~~~~~~------~~~~~i~~~S~SK~~-~~~G~RvG~~v~~ 278 (280)
||+|.++.++......++..+.. ...++|+++||||+| |++|+|+||+++.
T Consensus 276 Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 333 (500)
T 3tcm_A 276 DEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEIT 333 (500)
T ss_dssp ECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEE
T ss_pred ecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEe
Confidence 99999999854333444443321 223689999999999 8999999999973
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=268.63 Aligned_cols=222 Identities=20% Similarity=0.251 Sum_probs=179.1
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCC--CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS--ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
+.++|+|+.|.+ +. +.+ +.+.++..+...+.. ...+|.+..|.++||+++++++....+..+.+++|++ |+
T Consensus 34 ~~~~i~l~~~~~-~~---~~~-~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~--~~ 106 (398)
T 3ele_A 34 KENVYDFSIGNP-SI---PAP-QIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYM--TM 106 (398)
T ss_dssp GGGCEECCSCCC-CS---CCC-HHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ES
T ss_pred CCCeEEeecCCC-CC---CCC-HHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEE--cc
Confidence 357899999974 22 233 444444443331111 1357888999999999999998655444456789998 99
Q ss_pred cchhHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 119 SGSGSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
|+++++.++ +..++.+| |+|+++.|+|..+...++..|++++.+++ +++++.+|++.+++++.++ ..++++++
T Consensus 107 g~~~al~~~--~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~~~---~~~v~~~~ 180 (398)
T 3ele_A 107 GAAASLSIC--FRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPA-DTEHFQIDFDALEERINAH---TRGVIINS 180 (398)
T ss_dssp SHHHHHHHH--HHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECC-CTTTSSCCHHHHHHTCCTT---EEEEEECS
T ss_pred CHHHHHHHH--HHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CCcCCcCCHHHHHHHhCcC---CCEEEEcC
Confidence 999999999 77778999 99999999999999999999999999998 5557889999999998654 34788899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh------CCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccc
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRL------KRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGER 271 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~------~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 271 (280)
||||||.+++.+++++|+++|++ ||+++|+||+|.++.++.. .. ....+..+++++++|+||.||++|+|
T Consensus 181 p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~-~~---~~~~~~~~~~i~~~s~sK~~~~~G~r 256 (398)
T 3ele_A 181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI-KV---PFVTKYYDNTLVCYSYSKSLSLPGER 256 (398)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTC-CC---CCGGGTCSSEEEEEESTTTSSCTTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCC-Cc---CChHhhcCCeEEEEehhhcCCCccce
Confidence 99999999999999999999999 9999999999999988532 11 11223456899999999999999999
Q ss_pred cceEEEEc
Q 023599 272 VGALSVVR 279 (280)
Q Consensus 272 vG~~v~~~ 279 (280)
+||+++..
T Consensus 257 ~G~~~~~~ 264 (398)
T 3ele_A 257 IGYVLVPD 264 (398)
T ss_dssp CEEEECCT
T ss_pred eEEEEEcc
Confidence 99998764
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=275.53 Aligned_cols=251 Identities=17% Similarity=0.125 Sum_probs=185.1
Q ss_pred cccCCChHHHHHHHhhcC--CCC-----CeeEeecceeecCCCC----------------------ccchHHHHHHHHHH
Q 023599 22 ARAADIPIYAVMAAFRED--PSP-----MKLNLGFGVYRTEEGK----------------------PLLLNAVRQAEQLL 72 (280)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~--~~~-----~~i~l~~g~~~~~~~~----------------------~~~~~~~~~~~~~~ 72 (280)
...-.+++...+++++.. ++. .+|.+.+|.|... +. .+|.+.++++.+.+
T Consensus 36 ~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~-~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l 114 (498)
T 3ihj_A 36 EYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAM-GQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRIL 114 (498)
T ss_dssp EEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccc-cCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHH
Confidence 334446676666665432 233 8999999987221 21 13556666665555
Q ss_pred hccCC-CCCCCCCCCCCHHHHHHHHHHHhCCCC-ccccCCCeEEeecccchhHHHHHHHHHHhhcCCC----EEEEeCCC
Q 023599 73 VNDLS-ADKEYLPITGLPEFNKLSAKLIFGADS-PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQH----TVYLSQPT 146 (280)
Q Consensus 73 ~~~~~-~~~~y~~~~G~~~lr~~ia~~l~~~~~-~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd----~Vli~~P~ 146 (280)
....+ ....|.+..|.++||+++++++...++ .+.++++|++ |+|+++++.++ +..++.+|| +|+++.|+
T Consensus 115 ~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~--t~G~~~ai~~~--~~~l~~~gd~~~d~Vlv~~p~ 190 (498)
T 3ihj_A 115 QACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYL--TTGASDGISTI--LKILVSGGGKSRTGVMIPIPQ 190 (498)
T ss_dssp HHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEE--ESSHHHHHHHH--HHHHCCCCGGGSEEEEEEESC
T ss_pred HhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEE--cCCHHHHHHHH--HHHHcCCCCCCCCEEEEeCCC
Confidence 53222 356799999999999999999876552 5567799998 99999999999 777788875 99999999
Q ss_pred CCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC--CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCce
Q 023599 147 YGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS--GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLL 224 (280)
Q Consensus 147 y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~--~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ 224 (280)
|..|...++..|++++.+++.++.+|++|++.|++++++... +.++++++|||||||.+++.+++++|+++|++|+++
T Consensus 191 y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~ 270 (498)
T 3ihj_A 191 YPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLF 270 (498)
T ss_dssp CTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred chhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcE
Confidence 999999999999999999994344689999999999976321 245777789999999999999999999999999999
Q ss_pred eEEcccCCCcccCcCCChhHHHHhhh-------cCCeEEEEecccccc-cccccccceEEE
Q 023599 225 PFFDCAYQGFVMNMDADALPVRMFVA-------DGGECLVAQSYSKTM-GLYGERVGALSV 277 (280)
Q Consensus 225 ii~De~y~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~S~SK~~-~~~G~RvG~~v~ 277 (280)
||+||+|.++.++......++..+.. ...++|+++||||.| |++|+|+||+++
T Consensus 271 li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~ 331 (498)
T 3ihj_A 271 LLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEV 331 (498)
T ss_dssp EEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEE
T ss_pred EEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEE
Confidence 99999999999964333444554422 224689999999999 899999999985
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=271.11 Aligned_cols=247 Identities=17% Similarity=0.111 Sum_probs=192.9
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
.+..++...++..+.+..+... ++++|+|+.|.+ ..+.++...++..+.+.. .....+|.+..|.+++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~----~~~~~~~v~~a~~~~~~~-~~~~~~y~~~~g~~~lr~~l 76 (422)
T 3fvs_A 5 LQARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP----DFPPPDFAVEAFQHAVSG-DFMLNQYTKTFGYPPLTKIL 76 (422)
T ss_dssp CSCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC----SSCCCHHHHHHHHHHHHS-CGGGGSCCCTTCCHHHHHHH
T ss_pred hHHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC----CCCCCHHHHHHHHHHHhC-CCccCCCCCCCCCHHHHHHH
Confidence 3445566666677766665553 358999999995 233444444444444441 11136798888999999999
Q ss_pred HHHHhCCCCccccC-CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeec------
Q 023599 96 AKLIFGADSPAIKE-NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYD------ 168 (280)
Q Consensus 96 a~~l~~~~~~~~~~-~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~------ 168 (280)
++++....+..+.+ ++|++ |+|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++..
T Consensus 77 a~~~~~~~g~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G 152 (422)
T 3fvs_A 77 ASFFGELLGQEIDPLRNVLV--TVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNG 152 (422)
T ss_dssp HHHHHHHHTCCCCHHHHEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSS
T ss_pred HHHHHHhhCCCCCCCCcEEE--ECChHHHHHHH--HHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccccccc
Confidence 99986554444555 68888 99999999999 777789999999999999999999999999999999832
Q ss_pred ----CCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 169 ----PKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 169 ----~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
..++.+|++.+++++.++ ..++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...+
T Consensus 153 ~~~~~~~~~~d~~~l~~~~~~~---~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~ 228 (422)
T 3fvs_A 153 ELGSSSNWQLDPMELAGKFTSR---TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH-QHIS 228 (422)
T ss_dssp SCCBGGGSBCCHHHHHTTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCC
T ss_pred ccccccCCCCCHHHHHhhcCCC---ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCC
Confidence 124668999999988654 34788899999999999999999999999999999999999999988532 2333
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+..+....+++++++|+||.||++|+|+||+++.
T Consensus 229 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~ 262 (422)
T 3fvs_A 229 IASLPGMWERTLTIGSAGKTFSATGWKVGWVLGP 262 (422)
T ss_dssp GGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECC
T ss_pred hhhcccccCcEEEEecchhccCCccceEEEEEeC
Confidence 3444333468999999999999999999999875
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=265.83 Aligned_cols=241 Identities=14% Similarity=0.117 Sum_probs=186.4
Q ss_pred cccCCChHHHHHHHhh---cCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHH
Q 023599 22 ARAADIPIYAVMAAFR---EDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKL 98 (280)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~ 98 (280)
...++.++........ ...+++.|+|+.|++ ..+.+ +.+.++..+.. . ...+|++..|.++||++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~----~~~~~-~~v~~a~~~~~--~-~~~~y~~~~g~~~lr~~la~~ 78 (396)
T 3jtx_A 7 KQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEP----KHPTP-KVITDALTASL--H-ELEKYPLTAGLPELRQACANW 78 (396)
T ss_dssp HHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSC----CSCCC-HHHHHHHHHTG--G-GGGSCCCTTCCHHHHHHHHHH
T ss_pred ccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCC----CCCCC-HHHHHHHHHHh--h-hccCCCCCCCcHHHHHHHHHH
Confidence 3344454544433332 234678999999994 23333 44444444433 1 246788889999999999999
Q ss_pred HhCCCCcc-ccCC-CeEEeecccchhHHHHHHHHHHhhcCC-----CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCC
Q 023599 99 IFGADSPA-IKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQ-----HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKT 171 (280)
Q Consensus 99 l~~~~~~~-~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~G-----d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~ 171 (280)
+....+.. +.++ +|++ |+|+++++.++ +..++.+| |+|+++.|+|..+...++..|++++.+++ ++++
T Consensus 79 l~~~~g~~~~~~~~~i~~--t~g~~~al~~~--~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g 153 (396)
T 3jtx_A 79 LKRRYDGLTVDADNEILP--VLGSREALFSF--VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPS 153 (396)
T ss_dssp HHHHTTTCCCCTTTSEEE--ESSHHHHHHHH--HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTT
T ss_pred HHHhcCCCCCCCCCeEEE--cCCcHHHHHHH--HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCC
Confidence 86554443 4567 9988 99999999999 77778887 79999999999999999999999999998 6667
Q ss_pred CCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh---
Q 023599 172 NGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF--- 248 (280)
Q Consensus 172 ~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--- 248 (280)
+.+|++.+++++.+++ .++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++...........
T Consensus 154 ~~~d~~~l~~~~~~~~---~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 230 (396)
T 3jtx_A 154 FNPDWRSISEEVWKRT---KLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQL 230 (396)
T ss_dssp CCCCGGGSCHHHHHTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHT
T ss_pred CccCHHHHHHhhccCc---EEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhc
Confidence 7889999999997643 3788889999999999999999999999999999999999999988642222222221
Q ss_pred hhcCCeEEEEecccccccccccccceEEEE
Q 023599 249 VADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
....+++++++||||.|+++|+|+||++..
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 260 (396)
T 3jtx_A 231 GRSRQKLLMFTSLSKRSNVPGLRSGFVAGD 260 (396)
T ss_dssp TCCCTTEEEEEESTTTSSCGGGCCEEEEEC
T ss_pred ccccCcEEEEeccccccCCcccceEEEEeC
Confidence 112568999999999999999999999764
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=262.87 Aligned_cols=244 Identities=16% Similarity=0.163 Sum_probs=187.7
Q ss_pred cccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHH
Q 023599 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAK 97 (280)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~ 97 (280)
.+++...++..+..+.+..+.. ++.|+|+.|.+ ..+.++...++..+.+. .. ..+|.+..|.++||+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~~~~v~~a~~~~~~--~~-~~~y~~~~g~~~l~~~la~ 74 (389)
T 1gd9_A 4 SDRLELVSASEIRKLFDIAAGM--KDVISLGIGEP----DFDTPQHIKEYAKEALD--KG-LTHYGPNIGLLELREAIAE 74 (389)
T ss_dssp HHHHHHSCCCHHHHHHHHHHTC--SSCEECCCCSC----SSCCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHHHH
T ss_pred hhHhHhCChhHHHHHHHHHhhh--cCeEecCCCCC----CCCCCHHHHHHHHHHHh--CC-CCCCCCCCCcHHHHHHHHH
Confidence 3444555666676776666432 57899999984 22233334444444443 22 3568888899999999999
Q ss_pred HHhCCCCccccCCC-eEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH
Q 023599 98 LIFGADSPAIKENR-VSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 98 ~l~~~~~~~~~~~~-i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 176 (280)
++....+...++++ +++ |+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.+++..++++.+|+
T Consensus 75 ~~~~~~g~~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 150 (389)
T 1gd9_A 75 KLKKQNGIEADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNV 150 (389)
T ss_dssp HHHHHHCCCCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCH
T ss_pred HHHHHhCCCCCCCCeEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCH
Confidence 98543333345678 888 99999999999 77778899999999999999999999999999999983223577899
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+++++.++ ..++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...++..+.+..++++
T Consensus 151 ~~l~~~l~~~---~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~i 226 (389)
T 1gd9_A 151 DELKKYVTDK---TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA-RHYSIASLDGMFERTI 226 (389)
T ss_dssp HHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSTTCGGGEE
T ss_pred HHHHHhcCcC---ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC-CCCCHhhccCCCCCEE
Confidence 9999998653 34777899999999999999999999999999999999999999987532 1222333322235799
Q ss_pred EEecccccccccccccceEEEE
Q 023599 257 VAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++|+||.|+++|+|+||+++.
T Consensus 227 ~~~s~sK~~~~~G~r~G~~~~~ 248 (389)
T 1gd9_A 227 TVNGFSKTFAMTGWRLGFVAAP 248 (389)
T ss_dssp EEEESTTTTTCGGGCCEEEECC
T ss_pred EEecChhhcCCcccceEEEEEC
Confidence 9999999999999999999874
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=267.74 Aligned_cols=241 Identities=15% Similarity=0.086 Sum_probs=186.3
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIF 100 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~ 100 (280)
+...++..+.+..+.. .+.++|+|+.|.+ ..+.++...++..+.+. .....+|.+..|.++||+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~la~~~~ 75 (410)
T 3e2y_A 5 IEGLDSNVWVEFTKLA---ADPSVVNLGQGFP----DISPPSYVKEELSKAAF--IDNMNQYTRGFGHPALVKALSCLYG 75 (410)
T ss_dssp GTTCCCCHHHHTTTTT---TSTTSEECSSCCC----CSCCCHHHHHHHHHHHT--CGGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred hccCCccHHHHHHHHh---cCCCeEEecCCCC----CCCCCHHHHHHHHHHHh--CccccCCCCCCChHHHHHHHHHHHH
Confidence 3444555554433222 3468999999995 22334444444444333 2234579888899999999999986
Q ss_pred CCCCccccC-CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeec---------CC
Q 023599 101 GADSPAIKE-NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYD---------PK 170 (280)
Q Consensus 101 ~~~~~~~~~-~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~---------~~ 170 (280)
...+..+.+ ++|++ |+|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++.. ..
T Consensus 76 ~~~~~~~~~~~~i~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 151 (410)
T 3e2y_A 76 KIYQRQIDPNEEILV--AVGAYGSLFNS--IQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSS 151 (410)
T ss_dssp HHHTSCCCTTTSEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGG
T ss_pred HHhCCCCCCCCCEEE--eCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecccccccccccccc
Confidence 544444556 78988 99999999999 777788999999999999999999999999999999831 13
Q ss_pred CCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh
Q 023599 171 TNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA 250 (280)
Q Consensus 171 ~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 250 (280)
++.+|++.+++++.++ ..++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...++..+..
T Consensus 152 ~~~~d~~~l~~~~~~~---~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~ 227 (410)
T 3e2y_A 152 DWTFDPRELESKFSSK---TKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH-THVKIATLPG 227 (410)
T ss_dssp GEECCHHHHHTTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSTT
T ss_pred CCcCCHHHHHhhcCCC---ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC-CCCCHHHcCC
Confidence 4568999999988643 34788899999999999999999999999999999999999999988532 2333344433
Q ss_pred cCCeEEEEecccccccccccccceEEEE
Q 023599 251 DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 251 ~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+++++++||||.||++|+|+||+++.
T Consensus 228 ~~~~~i~~~S~sK~~g~~G~r~G~~~~~ 255 (410)
T 3e2y_A 228 MWERTITIGSAGKTFSVTGWKLGWSIGP 255 (410)
T ss_dssp CGGGEEEEEEHHHHSSCGGGCCEEEECC
T ss_pred ccCeEEEEecchhhcCCCCceEEEEEEC
Confidence 3468999999999999999999999864
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=267.49 Aligned_cols=251 Identities=15% Similarity=0.147 Sum_probs=175.1
Q ss_pred CCCccccccccccCCChHHHH---HHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCC
Q 023599 12 SDGDSAFEQVARAADIPIYAV---MAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGL 88 (280)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~ 88 (280)
+++|.+.+++...++..+... ..+++. .+.+.|+|+.|.+ ..+ +.+.+.++..+... .....+|.+..|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~idl~~g~~----~~~-~~~~v~~a~~~~~~-~~~~~~y~~~~g~ 77 (412)
T 2x5d_A 5 SRPARRFARIDRLPPYVFNITAELKMAARR-RGEDIIDLSMGNP----DGP-TPPHIVEKLCTVAQ-REDTHGYSTSRGI 77 (412)
T ss_dssp ----------------CHHHHHHHHHHHHH-TTCCCEECSSCCC----CSC-CCHHHHHHHHHTC----------CTTCC
T ss_pred ccccchhHHHhhcCchHHHHHHHHHHHHhh-cCCCEEecCCCCC----CCC-CCHHHHHHHHHHHh-CCCCCCCCCCCCc
Confidence 344666666665555544333 333322 4568899999984 222 33445554444332 1224568888899
Q ss_pred HHHHHHHHHHHhCCCCccccC-CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 89 PEFNKLSAKLIFGADSPAIKE-NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~-~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
++||+++++++....+..+.+ ++|++ |+|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.++.
T Consensus 78 ~~l~~~ia~~~~~~~g~~~~~~~~v~~--t~g~~~a~~~~--~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~- 152 (412)
T 2x5d_A 78 PRLRRAISHWYRDRYDVQIDPESEAIV--TIGSKEGLAHL--MLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPL- 152 (412)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEE--ESCHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeec-
Confidence 999999999985433333455 68888 99999999999 7777889999999999999999999999999999998
Q ss_pred cCC-CCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 168 DPK-TNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 168 ~~~-~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
+++ ++.+|++.+++++.++++ ++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...++.
T Consensus 153 ~~~~~~~~d~~~l~~~i~~~~~---~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~ 228 (412)
T 2x5d_A 153 VPGIDFFNELERAIRESIPKPR---MMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW-KAPSIM 228 (412)
T ss_dssp STTSCHHHHHHHHHHTEESCCS---EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGG
T ss_pred CCccCCCCCHHHHHHhcccCce---EEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCCChh
Confidence 443 445789999998875544 677789999999999999999999999999999999999999987422 222233
Q ss_pred HhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+....+++++++|+||.||++|+|+||+++.
T Consensus 229 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 260 (412)
T 2x5d_A 229 QVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN 260 (412)
T ss_dssp GSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC
T ss_pred hccCccCcEEEEecCccccCCcccceEEEEcC
Confidence 33222358999999999999999999999874
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=262.58 Aligned_cols=229 Identities=19% Similarity=0.148 Sum_probs=174.7
Q ss_pred hHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccc
Q 023599 28 PIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAI 107 (280)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~ 107 (280)
.+++.+.++.. .+.+.|+|+.|++ ..+.++ .+.++..+... . ...+|.+..|.++||+++++++....+..+
T Consensus 18 ~~~~~~~~~~~-~g~~~i~l~~g~~----~~~~~~-~v~~a~~~~~~-~-~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~ 89 (391)
T 3h14_A 18 DVMEAARRAEE-AGRRIIHMEVGQP----GTGAPR-GAVEALAKSLE-T-DALGYTVALGLPALRQRIARLYGEWYGVDL 89 (391)
T ss_dssp HHHHHHHHHHH-TTCCCEECCCSSC----SSCSCH-HHHHHHHHHHC------------CCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHh-cCCCeEEccCCCC----CCCCCH-HHHHHHHHHHh-c-CCCCCCCCCChHHHHHHHHHHHHHHhCCCC
Confidence 44445555533 4578999999984 233343 34444444331 2 246798889999999999999865444445
Q ss_pred cCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 108 KENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 108 ~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
.+++|++ |+|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++..+.++.+|++.++++ ++
T Consensus 90 ~~~~v~~--t~g~~~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~ 162 (391)
T 3h14_A 90 DPGRVVI--TPGSSGGFLLA--FTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DL 162 (391)
T ss_dssp CGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CC
T ss_pred CHHHEEE--ecChHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CC
Confidence 6789988 99999999999 77778999999999999999999999999999999983333577899998876 33
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
+ ++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. . .......+++++++|+||.+|+
T Consensus 163 ~---~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~---~~~~~~~~~~i~~~s~sK~~g~ 234 (391)
T 3h14_A 163 A---GLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK--A---VTALELTDECYVINSFSKYFSM 234 (391)
T ss_dssp S---EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC--C---CCGGGTCSSSEEEEESSSTTCC
T ss_pred e---EEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC--C---cChhhcCCCEEEEEechhccCC
Confidence 3 778889999999999999999999999999999999999999988532 1 1122335789999999999999
Q ss_pred cccccceEEEEc
Q 023599 268 YGERVGALSVVR 279 (280)
Q Consensus 268 ~G~RvG~~v~~~ 279 (280)
+|+|+||+++..
T Consensus 235 ~G~r~G~~~~~~ 246 (391)
T 3h14_A 235 TGWRVGWMVVPE 246 (391)
T ss_dssp TTSCCEEEECCG
T ss_pred ccceeEEEEeCH
Confidence 999999998753
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=268.26 Aligned_cols=240 Identities=12% Similarity=0.123 Sum_probs=185.6
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccC-CCCCCCCCCCCCHHHHHHHHHHH
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-SADKEYLPITGLPEFNKLSAKLI 99 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~lr~~ia~~l 99 (280)
.....+..+.+..+... .+++|+|+.|.| +.. ..+.+.+.++..+..... ....+|.+..|.++||+++++++
T Consensus 58 ~~~~~~s~~~~~~~~~~---~~~~i~l~~g~p-~~~--~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~ 131 (448)
T 3aow_A 58 ALEMRASEVRELLKLVE---TSDIISLAGGLP-NPK--TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWL 131 (448)
T ss_dssp HHHCCCCHHHHHHHHHH---TSSSEECCCCCC-CGG--GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHhcc---CCCcEeCCCCCC-Cch--hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHH
Confidence 33445566666555442 357899999996 322 245565655554443211 12357988899999999999998
Q ss_pred hCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHH
Q 023599 100 FGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGM 179 (280)
Q Consensus 100 ~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l 179 (280)
....+.+ .+++|++ |+|++++++++ +..++.+||+|+++.|+|..+...++..|++++.+++ +++ ++|++.|
T Consensus 132 ~~~~g~~-~~~~v~~--t~G~~~al~~~--~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~--g~d~~~L 203 (448)
T 3aow_A 132 GKRYGIS-QDNDIMI--TSGSQQALDLI--GRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPL-DDE--GMKVEIL 203 (448)
T ss_dssp HHHHCCC-TTSEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEE-ETT--EECHHHH
T ss_pred HHhcCcC-ChhhEEE--eCcHHHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEecc-CCC--CCCHHHH
Confidence 4443333 4688888 99999999999 7777889999999999999999999999999999998 443 5999999
Q ss_pred HHHHh----cCCCCcEEE-EecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe
Q 023599 180 LQDLG----AAPSGAIVL-LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE 254 (280)
Q Consensus 180 ~~~~~----~~~~~~~~v-~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 254 (280)
++++. +.. +.++| ++++|+||||.+++.+++++|+++|++||++||+||+|.++.++.. ...++..+ +..++
T Consensus 204 ~~~l~~~~~~~~-~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~-~~~~~~~~-~~~~~ 280 (448)
T 3aow_A 204 EEKLKELKSQGK-KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN-PEKKIKAL-DNEGR 280 (448)
T ss_dssp HHHHHHHHHTTC-CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC-CCCCTGGG-CTTSC
T ss_pred HHHHhhhhccCC-CCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC-CCcCHHhc-CCCCC
Confidence 99987 421 23354 6899999999999999999999999999999999999999988532 22333444 33458
Q ss_pred EEEEecccccccccccccceEEEE
Q 023599 255 CLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 255 ~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++++||||.|+ +|+|+||+++.
T Consensus 281 vi~~~S~SK~~~-~GlriG~v~~~ 303 (448)
T 3aow_A 281 VIYLGTFSKILA-PGFRIGWMVGD 303 (448)
T ss_dssp EEEEEESTTTTC-GGGCCEEEEEC
T ss_pred EEEEccchhhcc-ccccEEEEEeC
Confidence 999999999999 99999999875
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=259.61 Aligned_cols=244 Identities=19% Similarity=0.213 Sum_probs=185.1
Q ss_pred CChHHHHHHHhhcCC-CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhC---
Q 023599 26 DIPIYAVMAAFREDP-SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFG--- 101 (280)
Q Consensus 26 ~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~--- 101 (280)
+.++.+..+.+.... ..+.|+|+.|.|...+..+.++...++..+.+. .....+|.+..|.++||+++++++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~~~~~lr~~la~~~~~~~~ 93 (416)
T 1bw0_A 16 FNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID--SQECNGYFPTVGSPEAREAVATWWRNSFV 93 (416)
T ss_dssp CCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH--TTCSSSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhhcCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhh--CCccCCcCCCCCCHHHHHHHHHHHHhhhc
Confidence 345655555443222 257899999986211223334444444444443 23345788888999999999999871
Q ss_pred ---CCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHH
Q 023599 102 ---ADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 102 ---~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 178 (280)
..+..+.+++|++ |+|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++..+.++.+|++.
T Consensus 94 ~~~~~~~~~~~~~v~~--~~g~~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 169 (416)
T 1bw0_A 94 HKEELKSTIVKDNVVL--CSGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDE 169 (416)
T ss_dssp CSTTTGGGCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHH
T ss_pred ccccCCCCCCcceEEE--eCChHHHHHHH--HHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHH
Confidence 2444456789988 99999999999 7777889999999999999999999999999999998333357789999
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC---ChhHHHHhhhcCCeE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA---DALPVRMFVADGGEC 255 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~---~~~~~~~~~~~~~~~ 255 (280)
+++++.+++ .++++++|+||||.+++.+++++|+++|++||++||+||+|.++.++... ...++..+ +...++
T Consensus 170 l~~~l~~~~---~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~~~~ 245 (416)
T 1bw0_A 170 IRRLKDDKT---KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETTVPR 245 (416)
T ss_dssp HHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCSCCE
T ss_pred HHHHhccCC---eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCCCcE
Confidence 999986543 47888899999999999999999999999999999999999999875320 12222222 223478
Q ss_pred EEEecccccccccccccceEEEEc
Q 023599 256 LVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 256 i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++++||||.|+++|+|+||+++..
T Consensus 246 i~~~s~sK~~~~~Glr~G~~~~~~ 269 (416)
T 1bw0_A 246 VILGGTAKNLVVPGWRLGWLLYVD 269 (416)
T ss_dssp EEEEESTTTTSCGGGCCEEEEEEC
T ss_pred EEEecchhhCCCCCceEEEEEeeC
Confidence 999999999999999999999864
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=257.10 Aligned_cols=241 Identities=15% Similarity=0.156 Sum_probs=183.2
Q ss_pred ccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHH
Q 023599 19 EQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKL 98 (280)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~ 98 (280)
+++...++..+ ..+..+.. ..+.|+|+.|.+ +. +.+ +.+.++..+... .. ..+|.+..|.++||++++++
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~--~~~~i~l~~~~~-~~---~~~-~~v~~a~~~~~~-~~-~~~y~~~~g~~~l~~~la~~ 79 (386)
T 1u08_A 10 SKLPQLGTTIF-TQMSALAQ--QHQAINLSQGFP-DF---DGP-RYLQERLAHHVA-QG-ANQYAPMTGVQALREAIAQK 79 (386)
T ss_dssp CSCCCCCCCHH-HHHHHHHH--HTTCEECCCSSC-SS---CCC-HHHHHHHHHHHH-TT-CCSCCCTTCCHHHHHHHHHH
T ss_pred hhhhcCCccHH-HHHHHHHh--cCCeEEecCCCC-CC---CCC-HHHHHHHHHHHH-hh-ccCCCCCCCCHHHHHHHHHH
Confidence 34444444444 33333322 246899999985 22 233 344444444332 22 35788888999999999999
Q ss_pred HhCCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHH
Q 023599 99 IFGADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 99 l~~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 177 (280)
+....+..+.++ +|++ |+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.+++ +++++.+|++
T Consensus 80 l~~~~g~~~~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~ 154 (386)
T 1u08_A 80 TERLYGYQPDADSDITV--TAGATEALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQ 154 (386)
T ss_dssp HHHHHSCCCCTTTTEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-CTTTCCCCHH
T ss_pred HHHHhCCCCCCCCCEEE--cCChHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeec-CcccCcCCHH
Confidence 744323334567 8988 99999999999 7777889999999999999999999999999999998 4446789999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
.+++++.++ ..++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+....+++++
T Consensus 155 ~l~~~l~~~---~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~i~ 230 (386)
T 1u08_A 155 EFAALLSER---TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ-GHASVLAHPQLRERAVA 230 (386)
T ss_dssp HHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS-CCCCGGGSHHHHTTEEE
T ss_pred HHHHhhccc---CEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCC-CCcChhcccCccCcEEE
Confidence 999998643 34778889999999999999999999999999999999999999988532 22223333223358999
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++|+||.|+++|+|+||+++.
T Consensus 231 ~~s~sK~~~~~G~r~G~~~~~ 251 (386)
T 1u08_A 231 VSSFGKTYHMTGWKVGYCVAP 251 (386)
T ss_dssp EEEHHHHTTCGGGCCEEEECC
T ss_pred EecchhhcCCcccceEEEEcC
Confidence 999999999999999999875
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-35 Score=264.98 Aligned_cols=225 Identities=16% Similarity=0.147 Sum_probs=180.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.++++|+|+.|++ ..+.++...++..+.+. .....+|.+..|.++||+++++++...++..+.+++|++ |+|
T Consensus 42 ~g~~~i~l~~~~~----~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~--t~g 113 (437)
T 3g0t_A 42 TGTKFCRMEMGVP----GLPAPQIGIETEIQKLR--EGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVP--TVG 113 (437)
T ss_dssp HTCCCEECCCCSC----CSCCCHHHHHHHHHHHH--HTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESH
T ss_pred cCCCEEeccCcCC----CCCCCHHHHHHHHHHHh--CCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEE--eCC
Confidence 4578999999995 33334444444444443 232267988889999999999998755444456789988 999
Q ss_pred chhHHHHHHHHHHhh--cCCC--EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH-hcCCCCcEEEE
Q 023599 120 GSGSLRIGADFLAKH--YYQH--TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL-GAAPSGAIVLL 194 (280)
Q Consensus 120 ~~~al~~~~~~~~~~--~~Gd--~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~~~~~~v~ 194 (280)
+++++.++ +.+++ .+|| +|+++.|+|..+...++..|++++.+++ +++++.+|++.+++++ .++++ +++
T Consensus 114 ~t~al~~~--~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~~~~~~---~v~ 187 (437)
T 3g0t_A 114 SMQGCFVS--FLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDL-FEYRGEKLREKLESYLQTGQFC---SII 187 (437)
T ss_dssp HHHHHHHH--HHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEG-GGGCTTHHHHHHHHHHTTTCCC---EEE
T ss_pred HHHHHHHH--HHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEee-cCCCCccCHHHHHHHHhcCCce---EEE
Confidence 99999999 77777 8999 9999999999999999999999999998 5666778999999999 44444 777
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh---hHH-HHhhhcCCeEEEEeccccccccccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA---LPV-RMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
+++||||||.+++.+++++|+++|++||+++|+||+|.++.++...+. +++ ..+.+..+++++++|+||.++++|+
T Consensus 188 l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 267 (437)
T 3g0t_A 188 YSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ 267 (437)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccc
Confidence 899999999999999999999999999999999999999888522111 011 2333336789999999999999999
Q ss_pred ccceEEEE
Q 023599 271 RVGALSVV 278 (280)
Q Consensus 271 RvG~~v~~ 278 (280)
|+||+++.
T Consensus 268 r~G~~~~~ 275 (437)
T 3g0t_A 268 RIGVLMIS 275 (437)
T ss_dssp CCEEEEEC
T ss_pred eeEEEEEC
Confidence 99999875
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=263.27 Aligned_cols=244 Identities=15% Similarity=0.110 Sum_probs=179.6
Q ss_pred ccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHH
Q 023599 19 EQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKL 98 (280)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~ 98 (280)
+++...++..+.+.........+.+.|+|+.|.+ + ... .+.+.++..+... .....+|.+..|.++||++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~-~---~~~-~~~v~~a~~~~~~-~~~~~~y~~~~g~~~lr~~ia~~ 97 (404)
T 2o1b_A 24 NKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIP-D---GPT-PQGIIDHFQKALT-IPENQKYGAFHGKEAFKQAIVDF 97 (404)
T ss_dssp HHHHTSCCCTTC-------CCCSSCCEECCCCSC-S---SCC-CHHHHHHHHHHTT-CHHHHSCCCTTCCHHHHHHHHHH
T ss_pred hHhhhCCchHHHHHHHHHHhcCCCCEEecCCcCC-C---CCC-CHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHH
Confidence 3344444443333333222224456899999995 2 222 3444444444331 11134688778999999999999
Q ss_pred HhCCCCccccC-CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHH
Q 023599 99 IFGADSPAIKE-NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 99 l~~~~~~~~~~-~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 177 (280)
+....+...++ ++|++ |+|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++ +++++.+|++
T Consensus 98 ~~~~~g~~~~~~~~v~~--t~G~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~ 172 (404)
T 2o1b_A 98 YQRQYNVTLDKEDEVCI--LYGTKNGLVAV--PTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNL-EPPHYLPDWS 172 (404)
T ss_dssp HHHHHCCCCCTTTSEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEEC-CTTTCCCCGG
T ss_pred HHHHhCCCCCCcccEEE--cCCcHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEecc-CcccCcCCHH
Confidence 85433333344 78888 99999999999 7777889999999999999999999999999999998 4455678999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
.+++++.+++ .++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.++. ...++..+.+..+++++
T Consensus 173 ~l~~~l~~~~---~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~~~~i~ 247 (404)
T 2o1b_A 173 KVDSQIIDKT---KLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA--KNPSILASENGKDVAIE 247 (404)
T ss_dssp GSCHHHHHHE---EEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS--CCCCGGGSTTHHHHEEE
T ss_pred HHHHhhccCc---eEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC--CCCChhhcCCCCCCEEE
Confidence 9999886443 477788999999999999999999999999999999999999998753 11122222212247899
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++||||.||++|+|+||+++.
T Consensus 248 ~~s~sK~~g~~G~r~G~~~~~ 268 (404)
T 2o1b_A 248 IYSLSKGYNMSGFRVGFAVGN 268 (404)
T ss_dssp EEESTTTTTCGGGCCEEEEEC
T ss_pred EEecchhccCchhheEeEecC
Confidence 999999999999999998864
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=259.13 Aligned_cols=235 Identities=17% Similarity=0.129 Sum_probs=181.1
Q ss_pred hHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccc
Q 023599 28 PIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAI 107 (280)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~ 107 (280)
.+....++... .+++.|+|+.|.+ + .+.++...++..+.+. .. ..+|.+..|.++||+++++++....+..+
T Consensus 17 ~~~~~~~~~~~-~g~~~i~l~~~~~-~---~~~~~~v~~a~~~~~~--~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~ 88 (388)
T 1j32_A 17 IIDAKAKAMKA-EGIDVCSFSAGEP-D---FNTPKHIVEAAKAALE--QG-KTRYGPAAGEPRLREAIAQKLQRDNGLCY 88 (388)
T ss_dssp TTHHHHHHHHT-TTCCCEECCCSSC-S---SCCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHh-cCCCEEECCCCCC-C---CCCCHHHHHHHHHHHh--cC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 34444444433 4568899999985 2 2233334444444343 22 45688888999999999999864433334
Q ss_pred cCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 108 KENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 108 ~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
.++++++ |+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.++...++++.+|++.+++++.++
T Consensus 89 ~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 163 (388)
T 1j32_A 89 GADNILV--TNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK- 163 (388)
T ss_dssp CGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT-
T ss_pred ChhhEEE--cCCHHHHHHHH--HHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcC-
Confidence 5688888 99999999999 777788999999999999999999999999999999832235778999999998654
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEeccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMG 266 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~ 266 (280)
.+++++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+.. ..+++++++|+||.|+
T Consensus 164 --~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~sK~~~ 240 (388)
T 1j32_A 164 --TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA-QHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp --EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred --ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCCCHHHccccccCCEEEEeechhccC
Confidence 34788899999999999999999999999999999999999999988532 2222232211 1247899999999999
Q ss_pred ccccccceEEEE
Q 023599 267 LYGERVGALSVV 278 (280)
Q Consensus 267 ~~G~RvG~~v~~ 278 (280)
++|+|+||+++.
T Consensus 241 ~~G~r~G~~~~~ 252 (388)
T 1j32_A 241 MTGWRVGFLAGP 252 (388)
T ss_dssp CTTTCCEEEECC
T ss_pred CcccceEEEEeC
Confidence 999999999864
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=257.09 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=177.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+++.|+|+.|.+ ..+.+ +.+.++..+... .. ..+|.+..|.++||+++++++....+..+.++++++ |+|
T Consensus 39 ~g~~~i~l~~~~~----~~~~~-~~v~~a~~~~~~-~~-~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~--~~g 109 (389)
T 1o4s_A 39 KGEDVINLTAGEP----DFPTP-EPVVEEAVRFLQ-KG-EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVV--TNG 109 (389)
T ss_dssp TTCCCEECCCSSC----SSCCC-HHHHHHHHHHHT-TC-CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEE--ESH
T ss_pred cCCCEEEccCCCC----CCCCC-HHHHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEE--ecC
Confidence 3567899999985 22233 444444444331 22 346888889999999999998543333345688888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +..++.+||+|++++|+|..+...++..|++++.+++..++++.+|++.+++++.++ ..++++++|+
T Consensus 110 ~t~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~v~~~~p~ 184 (389)
T 1o4s_A 110 AKQALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK---TKAVLINSPN 184 (389)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT---EEEEEEESSC
T ss_pred HHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC---ceEEEEcCCC
Confidence 99999999 777788999999999999999999999999999999832235788999999988654 3477889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|+++|+++|+++|+||+|.++.++. ...++..+....+++++++||||.||++|+|+||+++.
T Consensus 185 nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~ 261 (389)
T 1o4s_A 185 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD--EFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS 261 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS--CCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC--CCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeC
Confidence 999999999999999999999999999999999998753 22234444222468999999999999999999999874
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=259.48 Aligned_cols=223 Identities=18% Similarity=0.146 Sum_probs=178.2
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccC-CCeEEeecccch
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKE-NRVSTVQCLSGS 121 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~-~~i~~v~t~g~~ 121 (280)
..|||+.|.+ ++.+.++..+++..+.+. ......|.+..|..++++++++++....+..+++ +++++ |+|++
T Consensus 40 ~~id~~~g~~---~~~~~~~~v~~a~~~~~~--~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~--~~g~~ 112 (407)
T 3nra_A 40 RPVDFSHGDV---DAHEPTPGAFDLFSAGVQ--SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLII--TPGTQ 112 (407)
T ss_dssp CCEETTSCCT---TTSCCCTTHHHHHHHHHH--HTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESHHH
T ss_pred ceeeecCcCC---CCCCCcHHHHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE--eCCcH
Confidence 4799999986 333344444444444443 2213468888999999999999975544433434 68888 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeec----CCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYD----PKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~----~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
+++.++ +.+++.+||+|+++.|+|..+...++..|++++.++... ++++.+|++.+++++.++++ ++++++
T Consensus 113 ~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~---~v~~~~ 187 (407)
T 3nra_A 113 GALFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGAR---VFLFSN 187 (407)
T ss_dssp HHHHHH--HHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCC---EEEEES
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCc---EEEEcC
Confidence 999999 777788999999999999999999999999999999721 35678999999999987544 777899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-hcCCeEEEEecccccccccccccceEE
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV-ADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
||||||.+++.+++++|+++|++||+++|+||+|..+.++. ....++..+. ...+++++++||||.||++|+|+||++
T Consensus 188 p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 266 (407)
T 3nra_A 188 PNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAG-ASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF 266 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTT-CCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEE
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEE
Confidence 99999999999999999999999999999999999998853 2333333332 234589999999999999999999998
Q ss_pred EE
Q 023599 277 VV 278 (280)
Q Consensus 277 ~~ 278 (280)
+.
T Consensus 267 ~~ 268 (407)
T 3nra_A 267 GS 268 (407)
T ss_dssp EC
T ss_pred cC
Confidence 74
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=261.66 Aligned_cols=241 Identities=19% Similarity=0.212 Sum_probs=179.1
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHH----------HHHHhccCCCCCCCCCCCCCHH
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQA----------EQLLVNDLSADKEYLPITGLPE 90 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~y~~~~G~~~ 90 (280)
+....+..+.++.+.... ..+++|+|+.|.| +... +|...+..+ ..... ...+|.+..|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~G~p-~~~~--~p~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~ 82 (425)
T 2r2n_A 11 SAARNPSPIRTMTDILSR-GPKSMISLAGGLP-NPNM--FPFKTAVITVENGKTIQFGEEMMK----RALQYSPSAGIPE 82 (425)
T ss_dssp HHTCCCCSGGGHHHHHHH-SCTTCEECCCCCC-CGGG--CSEEEEEEEETTSCCEEECHHHHH----HHTSCCCTTCCHH
T ss_pred HhcCCCchHHHHHHHhhc-CCCCeEEcCCcCC-Cchh--CCHHHHHHHHhhcccccccccchh----hhcCCCCCCCCHH
Confidence 334444555555544432 1257899999997 3332 221111000 00011 1246999999999
Q ss_pred HHHHHHHHHhCCCCcccc-------CCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeE
Q 023599 91 FNKLSAKLIFGADSPAIK-------ENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKT 163 (280)
Q Consensus 91 lr~~ia~~l~~~~~~~~~-------~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~ 163 (280)
||+++++++.+.++.... +++|++ |+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.
T Consensus 83 lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~--t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 158 (425)
T 2r2n_A 83 LLSWLKQLQIKLHNPPTIHYPPSQGQMDLCV--TSGSQQGLCKV--FEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIIN 158 (425)
T ss_dssp HHHHHHHHHHHHHCCTTTTSCGGGTCEEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHhcCCCCccccccCCcCcEEE--eCcHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEE
Confidence 999999998654333332 268887 99999999999 7777899999999999999999999999999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcC----------CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAA----------PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~----------~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
+++ +++ ++|++.|++++.+. .+.+.++++++||||||.+++.+++++|+++|++||++||+||+|.+
T Consensus 159 v~~-~~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~ 235 (425)
T 2r2n_A 159 VAS-DES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYF 235 (425)
T ss_dssp ECE-ETT--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGG
T ss_pred eCc-CCC--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccc
Confidence 998 343 58999999998731 12234446689999999999999999999999999999999999999
Q ss_pred cccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 234 FVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+.++.. ...++..+ +..+++++++||||+|+ +|+|+||+++..
T Consensus 236 ~~~~g~-~~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~ 278 (425)
T 2r2n_A 236 LQFNKF-RVPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFLTGPK 278 (425)
T ss_dssp GBSSSS-CCCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEEEEEH
T ss_pred ccCCCC-CCCCcccc-CCCCCEEEEccchhhcc-CccceEEEecCH
Confidence 988532 23333444 33468999999999999 999999998763
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=258.63 Aligned_cols=244 Identities=18% Similarity=0.161 Sum_probs=184.2
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSA 96 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia 96 (280)
+.+++...++..+.... .+.. ..+.|+|+.|.+ + .+.++...++..+.+. .. ..+|.+..|..+||++++
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~--~~~~i~l~~~~~-~---~~~~~~v~~a~~~~~~--~~-~~~y~~~~g~~~l~~~la 72 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMS-ALAT--RIGAVNLGQGFP-D---EDGPPKMLQAAQDAIA--GG-VNQYPPGPGSAPLRRAIA 72 (411)
T ss_dssp CCGGGGGGSSCHHHHHH-HHHH--TTTCEESSCSSC-S---SCCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHHH
T ss_pred hhhHhHhcCccHHHHHH-HHhh--cCCeeeccCcCC-C---CCCCHHHHHHHHHHHh--cC-CCCCCCCCCCHHHHHHHH
Confidence 34455555555454433 3322 246899999985 2 2233334444334343 22 457888889999999999
Q ss_pred HHHhCCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC-CCCCc
Q 023599 97 KLIFGADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP-KTNGL 174 (280)
Q Consensus 97 ~~l~~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~ 174 (280)
+++....+....++ +|++ |+|+++|+.++ +..++.+||+|+++.|+|..+...++..|++++.+++..+ .++.+
T Consensus 73 ~~~~~~~g~~~~~~~~v~~--t~g~~~al~~~--~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 148 (411)
T 2o0r_A 73 AQRRRHFGVDYDPETEVLV--TVGATEAIAAA--VLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFAL 148 (411)
T ss_dssp HHHHHHHCCCCCTTTSEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEEC
T ss_pred HHHHHHcCCCCCCCceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCC
Confidence 99854333334456 8888 99999999999 7777889999999999999999999999999999998322 24668
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE 254 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 254 (280)
|++.+++++.++ ..+|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+.....+
T Consensus 149 d~~~l~~~l~~~---~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~ 224 (411)
T 2o0r_A 149 DADALRRAVTPR---TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA-RHLPLAGFDGMAER 224 (411)
T ss_dssp CHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSTTTGGG
T ss_pred CHHHHHHhhccC---ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCcChhhccCCCCC
Confidence 999999998643 34778889999999999999999999999999999999999999987532 22223333222357
Q ss_pred EEEEecccccccccccccceEEEE
Q 023599 255 CLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 255 ~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++++.|+||.++++|+|+||+++.
T Consensus 225 ~i~~~s~sK~~~~~G~r~G~~~~~ 248 (411)
T 2o0r_A 225 TITISSAAKMFNCTGWKIGWACGP 248 (411)
T ss_dssp EEEEEEHHHHTTCTTTCEEEEECC
T ss_pred EEEEeechhhcCCccceEEEEeeC
Confidence 999999999999999999999864
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=253.44 Aligned_cols=233 Identities=15% Similarity=0.054 Sum_probs=178.7
Q ss_pred CChHHHHHHHhhc-CCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCC
Q 023599 26 DIPIYAVMAAFRE-DPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADS 104 (280)
Q Consensus 26 ~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~ 104 (280)
+.++.++....+. ....++|+|+.|++ ..+.+ +.+.++..+.. ....+|++..|.++||+++++++....+
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~i~l~~~~~----~~~~~-~~v~~a~~~~~---~~~~~y~~~~g~~~lr~~la~~l~~~~g 77 (376)
T 3ezs_A 6 PYPFERLRALLKEITPKKRGLDLGIGEP----QFETP-KFIQDALKNHT---HSLNIYPKSAFEESLRAAQRGFFKRRFK 77 (376)
T ss_dssp CCHHHHHHHHHTTCCCSSCCCBCSSCCC----CSCCC-HHHHHHHHTTG---GGGGSCCCTTCCHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHhhhccCCEEEeCCCCC----CCCCC-HHHHHHHHHhh---hhcCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4455555554433 11238999999984 33333 44444444432 1246788888999999999999855444
Q ss_pred ccccCCCeEEeecccchhHHHHHHHHHHhhcC--CCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHH
Q 023599 105 PAIKENRVSTVQCLSGSGSLRIGADFLAKHYY--QHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQD 182 (280)
Q Consensus 105 ~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~--Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 182 (280)
..+.+++|++ |+|+++++.++ +..++.+ ||+|+++.|+|..+...++..|++++.+++. ++ .++++ .+++.
T Consensus 78 ~~~~~~~i~~--t~g~~~al~~~--~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~-~~-~~~~~-~l~~~ 150 (376)
T 3ezs_A 78 IELKENELIS--TLGSREVLFNF--PSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLT-KE-NDFTP-SLNEK 150 (376)
T ss_dssp CCCCGGGEEE--ESSSHHHHHHH--HHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECC-GG-GTSCC-CCCHH
T ss_pred CCCCHHHEEE--CcCcHHHHHHH--HHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccC-CC-CCcch-hHHhh
Confidence 3345689988 99999999999 7777889 9999999999999999999999999999983 32 23444 56666
Q ss_pred HhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-----cCCeEEE
Q 023599 183 LGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-----DGGECLV 257 (280)
Q Consensus 183 ~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-----~~~~~i~ 257 (280)
+.++++ ++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. ...++....+ ..+++++
T Consensus 151 ~~~~~~---~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~ 225 (376)
T 3ezs_A 151 ELQEVD---LVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENT--PPPSLLEACMLAGNEAFKNVLV 225 (376)
T ss_dssp HHHHCS---EEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS--CCCCHHHHHHHTTCTTCTTEEE
T ss_pred hccCCC---EEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC--CCCCHHHccccccccccCcEEE
Confidence 665544 77788999999999999999999999999999999999999998863 2222333322 4578999
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++||||.||++|+|+||++..
T Consensus 226 ~~s~sK~~g~~G~r~G~~~~~ 246 (376)
T 3ezs_A 226 IHSLSKRSSAPGLRSGFIAGD 246 (376)
T ss_dssp EEESTTTTTCGGGCCEEEEEC
T ss_pred EecchhccCCccceeEEEeeC
Confidence 999999999999999999864
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=257.74 Aligned_cols=223 Identities=17% Similarity=0.118 Sum_probs=174.9
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccC-CCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeeccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-SADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLS 119 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g 119 (280)
.+.|+|+.|.+ + .+.+ +.+.++..+..... ....+|.+..|..+||+++++++....+....++ +|++ |+|
T Consensus 37 ~~~i~l~~~~~-~---~~~~-~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~--~~g 109 (429)
T 1yiz_A 37 YKPLNLGQGFP-D---YHAP-KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLV--TVG 109 (429)
T ss_dssp HCCEECCSSSC-S---SCCC-HHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEE--ESH
T ss_pred CCEEEecCCCC-C---CCCC-HHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEE--ecC
Confidence 46899999985 2 2233 44444444433211 1235688888999999999999854323234567 8988 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC---------CCCcCHHHHHHHHhcCCCCc
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK---------TNGLDFQGMLQDLGAAPSGA 190 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~---------~~~~d~~~l~~~~~~~~~~~ 190 (280)
+++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++ +.+ ++.+|++.+++++.++ .
T Consensus 110 ~~~a~~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~ 183 (429)
T 1yiz_A 110 AYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPL-KPNKTGGTISSADWVLDNNELEALFNEK---T 183 (429)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-BCCCSSSSEEGGGCBCCHHHHHHHCCTT---E
T ss_pred hHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeC-CcccccccccccCcccCHHHHHHHhccC---c
Confidence 99999999 7777889999999999999999999999999999998 443 4679999999998643 3
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
+++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...++..+.+..++++++.|+||.|+++|+
T Consensus 184 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF-EHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS-CCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCcChhhccCCcCceEEEecchhccCCCCc
Confidence 4777889999999999999999999999999999999999999988532 222233332233589999999999999999
Q ss_pred ccceEEEE
Q 023599 271 RVGALSVV 278 (280)
Q Consensus 271 RvG~~v~~ 278 (280)
|+||+++.
T Consensus 263 r~G~~~~~ 270 (429)
T 1yiz_A 263 KIGWAYGP 270 (429)
T ss_dssp CCEEEESC
T ss_pred ceEEEEeC
Confidence 99999874
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=259.98 Aligned_cols=226 Identities=16% Similarity=0.214 Sum_probs=177.4
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCC---eEEeecc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENR---VSTVQCL 118 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~---i~~v~t~ 118 (280)
+++|+|+.|.+.+. +.+...+.++++.+.+. .....+|.+..|.++||+++++++...+ ....+++ |++ |+
T Consensus 47 ~~~i~l~~g~~~~~-~~~~~~~~~~a~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~--t~ 120 (430)
T 2x5f_A 47 STTYNATIGMATNK-DGKMFASSLDAMFNDLT--PDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIV--TN 120 (430)
T ss_dssp TCSEECCCSSCEET-TEECCCHHHHTTBSSCC--GGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEE--ES
T ss_pred CCcEEeeeeeccCC-CCchhhHHHHHHHHhcC--cccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEE--cC
Confidence 57899999985211 11111122333332222 1124678888899999999999986543 3345677 888 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
|+++|++++ +..++.+||+|++++|+|..+...++. .|++++.+++ +++++.+|++.+++++.+.+.+.+++++++
T Consensus 121 g~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~ 197 (430)
T 2x5f_A 121 ALTHGLSLV--GDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPI-FDKDGHYTTDSLVEALQSYNKDKVIMILNY 197 (430)
T ss_dssp HHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECC-BCTTSCBCSHHHHHHHHHCCSSEEEEEECS
T ss_pred CchHHHHHH--HHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEec-cCccCCcCHHHHHHHHHhcCCCCEEEEEcC
Confidence 999999999 777788999999999999999999999 9999999998 443478999999999986433445888899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-----CCceeEEcccCCCcccCcCCChhHHH-HhhhcCCe---EEEEeccccccccc
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRL-----KRLLPFFDCAYQGFVMNMDADALPVR-MFVADGGE---CLVAQSYSKTMGLY 268 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~-----~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~S~SK~~~~~ 268 (280)
||||||.+++.+++++|+++|++ +|+++|+||+|.++.++.. ...++. .+.+..++ +++++||||.||++
T Consensus 198 p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 276 (430)
T 2x5f_A 198 PNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV-YTQSLFTALTNLHSNAILPIRLDGATKEFFAW 276 (430)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS-CCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc-cchHHHHHHhhccCCcceEEEEEecccCCCCC
Confidence 99999999999999999999999 9999999999999988532 223334 44333567 99999999999999
Q ss_pred ccccceEEE
Q 023599 269 GERVGALSV 277 (280)
Q Consensus 269 G~RvG~~v~ 277 (280)
|+|+||+++
T Consensus 277 G~riG~~~~ 285 (430)
T 2x5f_A 277 GFRVGFMTF 285 (430)
T ss_dssp GGCCEEEEE
T ss_pred CCCeEEEEE
Confidence 999999997
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=256.07 Aligned_cols=222 Identities=18% Similarity=0.090 Sum_probs=173.6
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-CeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~ 118 (280)
.+.+.|+|+.|.+ + .+.+ +.+.++..+... .....+|++..|.++||+++++++....+..++++ +|++ |+
T Consensus 23 ~g~~~idl~~~~~-~---~~~~-~~v~~a~~~~~~-~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~--~~ 94 (376)
T 2dou_A 23 RGVGLIDLSIGST-D---LPPP-EAPLKALAEALN-DPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALA--LI 94 (376)
T ss_dssp TTCCCEECSSCCC-C---CCCC-HHHHHHHHHHTT-CGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEE--ES
T ss_pred cCCCEEeccCCCC-C---CCCC-HHHHHHHHHHHh-CCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEE--cC
Confidence 4567999999985 2 2233 444444444332 12245677667899999999999854333333445 8888 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +.+++.+||+|+++.|+|..+...++..|++++.+++ ++++.+|++.+++++.+++ .++++++|
T Consensus 95 g~~~a~~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~---~~v~l~~p 167 (376)
T 2dou_A 95 GSQEGLAHL--LLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWREA---KVLLLNYP 167 (376)
T ss_dssp SHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHHHE---EEEEECSS
T ss_pred CcHHHHHHH--HHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhccCc---eEEEECCC
Confidence 999999999 7777889999999999999999999999999999997 4556789999999886443 47888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||||.+++.+++++|+++|++||+++|+||+|.++.++.. ..++..+.+..+++++++||||.||++|+|+||+++.
T Consensus 168 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 245 (376)
T 2dou_A 168 NNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE--APSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS 245 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC--CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC--CCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC
Confidence 99999999999999999999999999999999999987531 1112222233357999999999999999999999864
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=251.42 Aligned_cols=218 Identities=12% Similarity=0.062 Sum_probs=176.6
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+++.|+|+.|++ ..+.++...++..+.+. .. ..+|.+ .| +++|+++++++....+....++++++ |+|
T Consensus 21 ~g~~~idl~~~~~----~~~~~~~v~~a~~~~~~--~~-~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~--t~g 89 (377)
T 3fdb_A 21 YGQGVLPLWVAES----DFSTCPAVLQAITDAVQ--RE-AFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFP--IPD 89 (377)
T ss_dssp SCTTSEECCSSCC----CSCCCHHHHHHHHHHHH--TT-CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEE--ESC
T ss_pred cCCCeeeecccCC----CCCCCHHHHHHHHHHHH--cC-CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEE--eCC
Confidence 3568999999983 33344444444444444 22 456888 78 89999999998755444456789988 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
++++++++ +..++.+||+|+++.|+|..+...++..|++++.+++ +++ +|++.+++++.++++ ++++++||
T Consensus 90 ~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~---~d~~~l~~~l~~~~~---~v~i~~p~ 160 (377)
T 3fdb_A 90 VVRGLYIA--IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDA-TGG---INLHDVEKGFQAGAR---SILLCNPY 160 (377)
T ss_dssp HHHHHHHH--HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEEC-TTS---CCHHHHHHHHHTTCC---EEEEESSB
T ss_pred hHHHHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccC-CCC---CCHHHHHHHhccCCC---EEEEeCCC
Confidence 99999999 7777889999999999999999999999999999998 333 899999999987654 88889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|+++|++||+++|+||+|.++.++......++..+.. .+++++++||||.+|++|+|+||+++.
T Consensus 161 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~ 238 (377)
T 3fdb_A 161 NPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQIIFS 238 (377)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEEeC
Confidence 999999999999999999999999999999999998853122333333322 358999999999999999999998874
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=253.40 Aligned_cols=239 Identities=14% Similarity=0.086 Sum_probs=181.0
Q ss_pred ccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 023599 21 VARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIF 100 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~ 100 (280)
+...+...+. .+.++.. .+++.|+|+.|.+.. ...+.++...++..+.+. .. ...|.+..|.++||+++++++.
T Consensus 19 ~~~~~~~~~~-~~~~~~~-~g~~~i~l~~~~~~~-~~~~~~~~v~~a~~~~~~--~~-~~~y~~~~g~~~l~~~la~~l~ 92 (406)
T 1xi9_A 19 VEYAIRDVVL-PARELEK-KGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIK--EG-HNYYGDSEGLPELRKAIVEREK 92 (406)
T ss_dssp CCC--------CHHHHHH-TTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHHHHHHH
T ss_pred CChhHHHHHH-HHHHHHH-cCCCEEEecCCCCCc-CCCCCCHHHHHHHHHHHh--cC-CCCCCCCCCcHHHHHHHHHHHH
Confidence 3333333444 4455533 356889999998521 022234444444444443 22 3468888899999999999986
Q ss_pred CCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHH
Q 023599 101 GADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 101 ~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 180 (280)
...+...+++++++ |+|+++|+.++ +..++.+||+|++++|+|..+...++..|++++.+++..++++.+|++.++
T Consensus 93 ~~~g~~~~~~~v~~--t~g~~~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 168 (406)
T 1xi9_A 93 RKNGVDITPDDVRV--TAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 168 (406)
T ss_dssp HHHCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HhcCCCCCHHHEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHH
Confidence 54333455689988 99999999999 777788999999999999999999999999999999832245678999999
Q ss_pred HHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe-EEEEe
Q 023599 181 QDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE-CLVAQ 259 (280)
Q Consensus 181 ~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~i~~~ 259 (280)
+++.++ ..++++++|+||||.+++.+++++|+++|+++|++||+||+|.++.++. ...++..+ + .++ +++++
T Consensus 169 ~~l~~~---~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~--~~~~~~~~-~-~~~~~i~~~ 241 (406)
T 1xi9_A 169 KKITDR---TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG--EHISPGSL-T-KDVPVIVMN 241 (406)
T ss_dssp HHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS--CCCCHHHH-C-SSSCEEEEE
T ss_pred HhhCcC---ceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCC--CCCCHHHc-C-CCceEEEEe
Confidence 998754 3477788999999999999999999999999999999999999998742 22334444 2 467 99999
Q ss_pred cccccccccccccceEE
Q 023599 260 SYSKTMGLYGERVGALS 276 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v 276 (280)
||||.++++|+|+||++
T Consensus 242 s~sK~~~~~G~r~G~~~ 258 (406)
T 1xi9_A 242 GLSKVYFATGWRLGYMY 258 (406)
T ss_dssp ESTTTTCCGGGCCEEEE
T ss_pred ccccccCCCccEEEEEE
Confidence 99999999999999998
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=252.96 Aligned_cols=220 Identities=16% Similarity=0.173 Sum_probs=169.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhcc--CCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND--LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+.++|+|+.|++ ..+.++..++++.+.+... .....+|.+..|.++||+++++++. ++..+.+++|++ |
T Consensus 67 ~~~~~i~l~~g~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~--t 138 (449)
T 3qgu_A 67 PDAKIISLGIGDT----TEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFI--S 138 (449)
T ss_dssp TTCCCEECSSCCC----CCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEE--E
T ss_pred CCCCEEEeeCCCC----CCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEE--c
Confidence 4568999999984 3334444444443333311 1234678888999999999999987 444456789988 9
Q ss_pred ccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCe----------eeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 118 LSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLA----------MKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~----------~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
+|+++++.++ .+++.+||+|++++|+|..+...++..|++ ++.+++.+++++..|++.+ +++
T Consensus 139 ~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 210 (449)
T 3qgu_A 139 DGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRT 210 (449)
T ss_dssp SCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCC
T ss_pred cCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----CCC
Confidence 9999999987 345789999999999999999999999998 9999983333455554332 233
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
+ ++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+....+++++++||||.||+
T Consensus 211 ~---~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~ 286 (449)
T 3qgu_A 211 D---IIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD-CPKTIYEIPGADEVAIETCSFSKYAGF 286 (449)
T ss_dssp S---EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT-SCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred C---EEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC-CCCCHhhccCCCCcEEEEecchhhcCC
Confidence 3 777789999999999999999999999999999999999999988632 222334443334679999999999999
Q ss_pred cccccceEEEEc
Q 023599 268 YGERVGALSVVR 279 (280)
Q Consensus 268 ~G~RvG~~v~~~ 279 (280)
+|+|+||+++..
T Consensus 287 ~G~r~G~~~~~~ 298 (449)
T 3qgu_A 287 TGVRLGWTVVPK 298 (449)
T ss_dssp TTCCCEEEECCT
T ss_pred ccceeEEEecCH
Confidence 999999998753
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=252.62 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=164.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhcc--CCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND--LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
+.++|+|+.|++ +.+ .++..++++.+.+... .....+|.+..|.++||+++++|+.+ +..+.+++|++ |+
T Consensus 55 ~~~~i~l~~~~~-~~~---~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~--t~ 126 (432)
T 3ei9_A 55 DAQVISLGIGDT-TEP---IPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFV--SD 126 (432)
T ss_dssp TCCCEECSSCCC-CSC---CCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEE--ES
T ss_pred CCCeEEccCCCC-CCC---CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEE--CC
Confidence 458999999986 333 3444444433333310 12235788888999999999999863 33345789988 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCC------------eeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGL------------AMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~------------~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
|+++++.++ ..++.+||+|++++|+|..+...++..|. +++++++.++.++..|++. .++
T Consensus 127 G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~ 198 (432)
T 3ei9_A 127 GAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGR 198 (432)
T ss_dssp CHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCC
T ss_pred ChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CCC
Confidence 999999865 45678999999999999999999888874 6788888322334455432 122
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
++ ++++++||||||.+++.+++++|+++|++||++||+||+|.++.++.. ..++..+....+++++++||||+||
T Consensus 199 ~~---~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~g 273 (432)
T 3ei9_A 199 TD---IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN--PRSIFEIPGAEEVAMETASFSNYAG 273 (432)
T ss_dssp CS---EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC--CSSGGGSTTGGGTEEEEEESHHHHC
T ss_pred CC---EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC--CCChhhcCCCCCeEEEEecchhccC
Confidence 33 777789999999999999999999999999999999999999988532 2223333333468999999999999
Q ss_pred ccccccceEEEEc
Q 023599 267 LYGERVGALSVVR 279 (280)
Q Consensus 267 ~~G~RvG~~v~~~ 279 (280)
++|+|+||+++..
T Consensus 274 ~~G~r~G~~~~~~ 286 (432)
T 3ei9_A 274 FTGVRLGWTVIPK 286 (432)
T ss_dssp TTTTCCEEEECCT
T ss_pred CcccceEEEEECh
Confidence 9999999998754
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=245.88 Aligned_cols=231 Identities=19% Similarity=0.203 Sum_probs=176.3
Q ss_pred ccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHH
Q 023599 19 EQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKL 98 (280)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~ 98 (280)
+++...++..+......... ++.|+|+.|.+ ..+.+ +.+.++..+... . ..+|.+..|.++||++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~i~l~~~~~----~~~~~-~~v~~a~~~~~~-~--~~~y~~~~~~~~l~~~la~~ 73 (381)
T 1v2d_A 5 PRTEAAKESIFPRMSGLAQR---LGAVNLGQGFP----SNPPP-PFLLEAVRRALG-R--QDQYAPPAGLPALREALAEE 73 (381)
T ss_dssp GGGGGC---CHHHHHHHHHH---HTCEECCCCSC----SSCCC-HHHHHHHHHHTT-T--SCSCCCTTCCHHHHHHHHHH
T ss_pred hhhhhcCccHHHHHHHHHhc---CCeEEecCCCC----CCCCC-HHHHHHHHHHHH-H--hcCCCCCCCCHHHHHHHHHh
Confidence 34444444444343333321 46899999985 22233 444444444332 2 34688888999999999999
Q ss_pred HhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeec--CCCCCcCH
Q 023599 99 IFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYD--PKTNGLDF 176 (280)
Q Consensus 99 l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~--~~~~~~d~ 176 (280)
+. ..++++++ |+|+++++.++ +..++.+||+|++++|+|..+...++..|++++.+++ + ++++.+|+
T Consensus 74 ~~------~~~~~v~~--~~g~~~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~~~d~ 142 (381)
T 1v2d_A 74 FA------VEPESVVV--TSGATEALYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRL-DLTPEGFRLDL 142 (381)
T ss_dssp HT------SCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-EEETTEEECCH
T ss_pred cC------CChhhEEE--cCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeC-CCCCccCCcCH
Confidence 52 22467887 99999999999 7777889999999999999999999999999999998 4 34567899
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+++++.++ ..++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.++ . ...++..+ ..++++
T Consensus 143 ~~l~~~l~~~---~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g-~-~~~~~~~~--~~~~~~ 215 (381)
T 1v2d_A 143 SALEKALTPR---TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYG-E-RPRRLREF--APERTF 215 (381)
T ss_dssp HHHHTTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSS-S-CCCCHHHH--CTTTEE
T ss_pred HHHHHhcCcC---CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccC-C-CCCCHHHh--cCCCEE
Confidence 9999988643 347788899999999999999999999999999999999999999872 1 22223333 346899
Q ss_pred EEecccccccccccccceEEEE
Q 023599 257 VAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++|+||.|+++|+|+||+++.
T Consensus 216 ~~~s~sK~~~~~G~r~G~~~~~ 237 (381)
T 1v2d_A 216 TVGSAGKRLEATGYRVGWIVGP 237 (381)
T ss_dssp EEEEHHHHTTCGGGCCEEEECC
T ss_pred EEeechhhcCCcccceEEEEeC
Confidence 9999999999999999999874
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=246.82 Aligned_cols=243 Identities=18% Similarity=0.250 Sum_probs=181.2
Q ss_pred cccCCChHHHHHHHhh--cCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCC-CCCCCCCCCCCHHHHHHHHHH
Q 023599 22 ARAADIPIYAVMAAFR--EDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS-ADKEYLPITGLPEFNKLSAKL 98 (280)
Q Consensus 22 ~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~G~~~lr~~ia~~ 98 (280)
....+..+....+... ..++.+.|+|+.|.+ +.. ..+.+.+.++..+...... ... |.+..|.++||++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~ 87 (407)
T 2zc0_A 12 NWIKGSALADVMKKASELQKKGVKLISLAAGDP-DPE--LIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAF 87 (407)
T ss_dssp GGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCC-CTT--TSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHH
T ss_pred ccCCchHHHHHHHhhhcccCCCCceEeCCCCCC-Cch--hCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHH
Confidence 3344444444443332 123447899999986 322 2355555555444332111 235 88888999999999999
Q ss_pred HhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHH
Q 023599 99 IFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 99 l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 178 (280)
+....+...++++|++ |+|+++|+.++ +..++.+||+|+++.|+|..+...++..|++++.++. +++ ++|++.
T Consensus 88 ~~~~~g~~~~~~~v~~--t~g~t~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~--~~d~~~ 160 (407)
T 2zc0_A 88 LKKYDHLEVSPENIVI--TIGGTGALDLL--GRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPV-DND--GMRVDL 160 (407)
T ss_dssp HHHHSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEE-ETT--EECHHH
T ss_pred HHHhcCCCCCcceEEE--ecCHHHHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEccc-CCC--CCCHHH
Confidence 8543333345688888 99999999999 7777889999999999999999999999999999998 443 489999
Q ss_pred HHHHHh----cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe
Q 023599 179 MLQDLG----AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE 254 (280)
Q Consensus 179 l~~~~~----~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 254 (280)
+++++. +..+.+.++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.++.. ...++..+ +..++
T Consensus 161 l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~~~ 238 (407)
T 2zc0_A 161 LEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG-DIVPLKAL-DNEGR 238 (407)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS-SCCCGGGG-CSSCC
T ss_pred HHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC-CCCChhhc-CCCCC
Confidence 999997 4222223346899999999999999999999999999999999999999987532 22223333 23358
Q ss_pred EEEEecccccccccccccceEEEE
Q 023599 255 CLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 255 ~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++++||||.++ +|+|+||+++.
T Consensus 239 ~i~~~s~sK~~~-~G~r~G~~~~~ 261 (407)
T 2zc0_A 239 VIVAGTLSKVLG-TGFRIGWIIAE 261 (407)
T ss_dssp EEEEEESTTTTC-TTSCCEEEECC
T ss_pred EEEEcccccccC-CCcceEEEecC
Confidence 999999999999 99999999874
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=252.63 Aligned_cols=225 Identities=14% Similarity=0.176 Sum_probs=175.4
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccC-CCCCCCCCCCCCHHHHHHHHHHHhCCCCcc-ccCCCeEEeecc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-SADKEYLPITGLPEFNKLSAKLIFGADSPA-IKENRVSTVQCL 118 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~-~~~~~i~~v~t~ 118 (280)
.++.|+|+.|.+ +.. ..+.+.+.++..+..... ....+|.+..|.++||+++++++....+.. ..+++|++ |+
T Consensus 42 ~~~~idl~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~--t~ 116 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPE--TFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIF--TV 116 (425)
T ss_dssp STTCEECCCCSC-CGG--GSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEE--EE
T ss_pred CCCceeCCCCCC-Ccc--cCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEE--ec
Confidence 467899999986 222 234555555544433211 113568888899999999999985432222 34688888 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC-----CCCcEEE
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-----PSGAIVL 193 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-----~~~~~~v 193 (280)
|+++++.++ +.+++.+||+|+++.|+|..+...++..|++++.++. +++ ++|++.+++++.+. ..+..+|
T Consensus 117 G~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~--~~d~~~l~~~l~~~~~~~~~~~~~~v 191 (425)
T 1vp4_A 117 GSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPL-EDD--GMDLNVLERKLSEFDKNGKIKQVKFI 191 (425)
T ss_dssp HHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEE-ETT--EECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred cHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEecc-CCC--CCCHHHHHHHHHhhhhcccCCCceEE
Confidence 999999999 7777889999999999999999999999999999998 443 48999999998751 0123354
Q ss_pred -EecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccccc
Q 023599 194 -LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 194 -~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv 272 (280)
++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+ +..+++++++||||.|+ +|+|+
T Consensus 192 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r~ 268 (425)
T 1vp4_A 192 YVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE-TVDPIFKI-GGPERVVLLNTFSKVLA-PGLRI 268 (425)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC-CCCCHHHH-HCTTTEEEEEESTTTTC-GGGCE
T ss_pred EECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC-CCcCHHHh-CCCCCEEEEeccccccc-cccce
Confidence 6899999999999999999999999999999999999999988532 22334444 33468999999999999 99999
Q ss_pred ceEEEE
Q 023599 273 GALSVV 278 (280)
Q Consensus 273 G~~v~~ 278 (280)
||+++.
T Consensus 269 G~~~~~ 274 (425)
T 1vp4_A 269 GMVAGS 274 (425)
T ss_dssp EEEECC
T ss_pred EEEeeC
Confidence 999874
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=255.60 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=167.2
Q ss_pred CCeeEeecceeecCCCCccch-HHHHHHH--HHHhc-cCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 42 PMKLNLGFGVYRTEEGKPLLL-NAVRQAE--QLLVN-DLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
...|+|+.|.| +.. .++. +.+.++. .+... ......+|++..|.++||+++++++. +.+++|++ |
T Consensus 33 ~~~i~~~~G~p-~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~--t 101 (427)
T 3ppl_A 33 NLKLDLTRGKP-SSE--QLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VPVEQVLA--G 101 (427)
T ss_dssp CCCEECCCCSC-CHH--HHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEE--C
T ss_pred CceEecCCCCC-ChH--HCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CCcceEEE--e
Confidence 56899999996 222 1221 1233332 22221 12235779999999999999999982 34589988 9
Q ss_pred ccchhHH--HHHHHHHHhhc--C----------CCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 118 LSGSGSL--RIGADFLAKHY--Y----------QHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 118 ~g~~~al--~~~~~~~~~~~--~----------Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
+|+++++ +++ +..++. + ||+|++++|+|..+...++..|++++.+|+ +++ ++|++.+++++
T Consensus 102 ~G~~~al~~~~~--~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~-~~~--g~d~~~l~~~l 176 (427)
T 3ppl_A 102 DASSLNIMFDVI--SWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPM-NED--GPDMDAVEELV 176 (427)
T ss_dssp SSCHHHHHHHHH--HHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEE-ETT--EECHHHHHHHT
T ss_pred CCcHHHHHHHHH--HHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCC-CCC--CCCHHHHHHHH
Confidence 9999999 467 555566 6 999999999999999999999999999999 443 59999999998
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH-HhCCceeEEcccCCCcccCcCC-ChhHHHHhh---hcCCeEEEE
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLM-RLKRLLPFFDCAYQGFVMNMDA-DALPVRMFV---ADGGECLVA 258 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~-~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~---~~~~~~i~~ 258 (280)
... +.++++++++||||||.+++.+++++|+++| ++||++||+||+|.++.+.... ...++..+. +..++++++
T Consensus 177 ~~~-~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (427)
T 3ppl_A 177 KNP-QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAF 255 (427)
T ss_dssp TST-TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEE
T ss_pred hcC-CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEE
Confidence 432 2233444668999999999999999999999 9999999999999998775321 122334432 345799999
Q ss_pred ecccccccccccccceEEEE
Q 023599 259 QSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~ 278 (280)
+||||+ +++|+|+||+++.
T Consensus 256 ~S~SK~-~~~G~r~G~~~~~ 274 (427)
T 3ppl_A 256 TSTSKI-TLAGAGVSFFLTS 274 (427)
T ss_dssp EESTTT-SCTTSSCEEEECC
T ss_pred echhhc-cCcCccEEEEEcC
Confidence 999999 6799999999875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=248.22 Aligned_cols=226 Identities=16% Similarity=0.193 Sum_probs=173.7
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhcc---------CCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc--ccCC
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND---------LSADKEYLPITGLPEFNKLSAKLIFGADSPA--IKEN 110 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~--~~~~ 110 (280)
...|+|+.++ +. .+.+.+.+++...... -.....|.+..|.++||+++++++....+.. +.++
T Consensus 36 ~~~i~l~~~~----~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~ 109 (428)
T 1iay_A 36 NGVIQMGLAE----NQ--LCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE 109 (428)
T ss_dssp TSBEECSSCC----CC--SSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred Cceeeecccc----ch--hhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh
Confidence 3678998766 32 3334555555532100 0013568888899999999999986433322 4568
Q ss_pred CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCCeeeEEEeecCCCCCcCHHHHHHHHhc---C
Q 023599 111 RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGLAMKTYHYYDPKTNGLDFQGMLQDLGA---A 186 (280)
Q Consensus 111 ~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~---~ 186 (280)
+|++ |+|+++++.++ +.+++.+||+|+++.|+|..+...+. ..|++++.+++..++++.+|++.+++++.+ .
T Consensus 110 ~i~~--~~G~~~ai~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (428)
T 1iay_A 110 RVVM--AGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS 185 (428)
T ss_dssp SCEE--EEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred hEEE--ccChHHHHHHH--HHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence 8888 99999999999 77778899999999999999987554 679999999983224578899999999874 1
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-------CCeEEEEe
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-------GGECLVAQ 259 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~ 259 (280)
..+.+++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+... .++++++.
T Consensus 186 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~viv~~ 264 (428)
T 1iay_A 186 NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP-QFVSIAEILDEQEMTYCNKDLVHIVY 264 (428)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS-CCCCHHHHHTSGGGTTSCTTSEEEEE
T ss_pred CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC-CccCHHHhccccccccCCCCcEEEEe
Confidence 22345788899999999999999999999999999999999999999887532 22233444333 47899999
Q ss_pred cccccccccccccceEEEE
Q 023599 260 SYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.||++|+|+||+++.
T Consensus 265 s~sK~~g~~Glr~G~~~~~ 283 (428)
T 1iay_A 265 SLSKDMGLPGFRVGIIYSF 283 (428)
T ss_dssp ESTTTSSCGGGCEEEEEES
T ss_pred cchhhcCCCCceEEEEEeC
Confidence 9999999999999999873
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=242.34 Aligned_cols=226 Identities=13% Similarity=0.075 Sum_probs=176.8
Q ss_pred cCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCC
Q 023599 24 AADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGAD 103 (280)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~ 103 (280)
.+.....+....+. .+++|+|+.|++ ..+.++..+++..+.+. ...+|.+..+ ++||+++++++.
T Consensus 15 ~~~~~~~~~~~~~~---~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~----~~~~y~~~~~-~~lr~~la~~~~--- 79 (365)
T 3get_A 15 EPGKDIEVIAKEYG---VKEVIKLASNEN----PFGTPPKAIECLRQNAN----KAHLYPDDSM-IELKSTLAQKYK--- 79 (365)
T ss_dssp CCCCCHHHHHHHTT---CSCCEECSSCCC----TTCSCHHHHHHHHHHGG----GTTSCCCTTC-HHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHhcC---CCceEEecCCCC----CCCCCHHHHHHHHHHHH----hhccCCCCCh-HHHHHHHHHHhC---
Confidence 33445555555553 368999999983 33344444444444333 2456777666 899999999973
Q ss_pred CccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 104 SPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 104 ~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
+.+++|++ |+|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++ +++++ +|++.+++++
T Consensus 80 ---~~~~~v~~--~~g~~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l 150 (365)
T 3get_A 80 ---VQNENIII--GAGSDQVIEFA--IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETH 150 (365)
T ss_dssp ---CCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHT
T ss_pred ---CCcceEEE--CCCHHHHHHHH--HHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHh
Confidence 23578888 99999999999 7777899999999999999999999999999999998 45667 9999999999
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc--CcCCChhHHHHhhhcCCeEEEEecc
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM--NMDADALPVRMFVADGGECLVAQSY 261 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~ 261 (280)
++++ .++++++||||||.+++.+++++|+++| ++|+++|+||+|.++.+ ... ...+.....+..+++++++||
T Consensus 151 ~~~~---~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~ 225 (365)
T 3get_A 151 KDEI---KLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK-KHLEPCELIKEFDNVLYLGTF 225 (365)
T ss_dssp TTTE---EEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG-GCCCHHHHHHHCTTEEEEEES
T ss_pred CCCC---CEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc-ccccHhHHhccCCCEEEEeec
Confidence 7443 4788899999999999999999999999 57999999999999884 322 112223333456789999999
Q ss_pred cccccccccccceEEEE
Q 023599 262 SKTMGLYGERVGALSVV 278 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~ 278 (280)
||.||++|+|+||+++.
T Consensus 226 sK~~~~~G~r~G~~~~~ 242 (365)
T 3get_A 226 SKLYGLGGLRIGYGIAN 242 (365)
T ss_dssp SSTTSCTTTCCEEEEEC
T ss_pred chHhcCcchheEEEEcC
Confidence 99999999999999874
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=247.24 Aligned_cols=219 Identities=18% Similarity=0.206 Sum_probs=160.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhc--cCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN--DLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+.+.|+|+.|++ +. +.++...++..+.+.. ......+|.+..|.++||+++++++. .+. +.+++|++ |
T Consensus 31 ~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~--~ 101 (400)
T 3asa_A 31 PQHTVINLSIGDT-TQ---PLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFI--S 101 (400)
T ss_dssp TTSCCEECSSCCC-CC---CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEE--E
T ss_pred CCCceEeccCCCC-CC---CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEE--c
Confidence 4568999999984 22 2333333333232221 01124568888899999999999974 222 34688888 9
Q ss_pred ccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCe-eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEec
Q 023599 118 LSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLA-MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQA 196 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~-~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~ 196 (280)
+|+++++.++ + .++.+||+|+++.|+|..+...++..|++ ++.+++.++.++..|++. . ++++ +++++
T Consensus 102 ~G~~~al~~~--~-~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~----~-~~~~---~v~l~ 170 (400)
T 3asa_A 102 DGAKVDLFRL--L-SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE----D-THID---ILCLC 170 (400)
T ss_dssp SCHHHHHHHH--H-HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCT----T-CCCS---EEEEE
T ss_pred cChHHHHHHH--H-HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhh----c-cCcc---EEEEe
Confidence 9999999987 3 34579999999999999999999999999 999998322233344322 1 2233 77778
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
+||||||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+....+++++++||||.||++|+|+||++
T Consensus 171 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~ 249 (400)
T 3asa_A 171 SPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS-LPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTV 249 (400)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT-SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC-CCCchhhCCCCCCceEEEecchhhcCCcchheeEEe
Confidence 9999999999999999999999999999999999999887532 111223332123479999999999999999999998
Q ss_pred EEc
Q 023599 277 VVR 279 (280)
Q Consensus 277 ~~~ 279 (280)
+..
T Consensus 250 ~~~ 252 (400)
T 3asa_A 250 IPQ 252 (400)
T ss_dssp CCT
T ss_pred eCh
Confidence 753
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=248.25 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=178.2
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCC----------CCCCCCCCCCHHHHHHHHHHHhC--CCCccccCC
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSA----------DKEYLPITGLPEFNKLSAKLIFG--ADSPAIKEN 110 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~y~~~~G~~~lr~~ia~~l~~--~~~~~~~~~ 110 (280)
..|+|+.++ + +...+.+.++.++....... ..+|.+..|.++||+++++++.. .....+.++
T Consensus 39 ~~i~lg~~~----~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~ 112 (435)
T 3piu_A 39 GIIQMGLAE----N--QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN 112 (435)
T ss_dssp SBEECSSCC----C--CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG
T ss_pred CeEEecccc----c--cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH
Confidence 578888866 3 24566776666654311110 14699999999999999999863 222335578
Q ss_pred CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---
Q 023599 111 RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA--- 186 (280)
Q Consensus 111 ~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~--- 186 (280)
++++ |+|+++|+.++ +..++.+||+|+++.|+|..+...+. ..|++++.++..++.++.+|++.+++++.+.
T Consensus 113 ~v~~--~~gg~~a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 188 (435)
T 3piu_A 113 HLVL--TAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKR 188 (435)
T ss_dssp GEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHT
T ss_pred HEEE--cCChHHHHHHH--HHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhc
Confidence 9988 99999999999 77778899999999999999998887 7899999999843335778999999999751
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc---------CCeEEE
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD---------GGECLV 257 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~---------~~~~i~ 257 (280)
..+.++|++++||||||.+++.+++++|+++|++||+++|+||+|..+.+... ...++..+... .+++++
T Consensus 189 ~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~i~ 267 (435)
T 3piu_A 189 NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP-SFISVMEVLKDRNCDENSEVWQRVHV 267 (435)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS-CCCCHHHHHHC-------CGGGGEEE
T ss_pred CCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCcCHHHhccccccccccCCCCCEEE
Confidence 12345888899999999999999999999999999999999999999888532 33334444332 468999
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++||||.||++|+|+||+++.
T Consensus 268 i~s~sK~~g~~G~r~G~~~~~ 288 (435)
T 3piu_A 268 VYSLSKDLGLPGFRVGAIYSN 288 (435)
T ss_dssp EEESSSSSCCGGGCEEEEEES
T ss_pred EEeeecccCCCceeEEEEEeC
Confidence 999999999999999999874
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=241.76 Aligned_cols=215 Identities=18% Similarity=0.213 Sum_probs=170.8
Q ss_pred CCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 39 DPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 39 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
..+.++|+|+.|+ +..+.++...++..+.+. . ..+| +..|.++||+++++++. +.++++++ |+
T Consensus 13 ~~~~~~i~l~~~~----~~~~~~~~v~~a~~~~~~---~-~~~y-~~~~~~~l~~~la~~~~------~~~~~i~~--~~ 75 (354)
T 3ly1_A 13 PSTDNPIRINFNE----NPLGMSPKAQAAARDAVV---K-ANRY-AKNEILMLGNKLAAHHQ------VEAPSILL--TA 75 (354)
T ss_dssp CCSSSCEECSSCC----CSSCCCHHHHHHHHHTGG---G-TTSC-CHHHHHHHHHHHHHHTT------SCGGGEEE--ES
T ss_pred CCCCceEEccCCC----CCCCCCHHHHHHHHHHHh---h-CcCC-CCCchHHHHHHHHHHhC------CChHHEEE--eC
Confidence 3456899999998 333444444444433333 1 3456 55688999999999972 23588888 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.++. + +++.+|++.+++++.+. .+..++++++|
T Consensus 76 g~~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~l~~~-~~~~~v~l~~p 150 (354)
T 3ly1_A 76 GSSEGIRAA--IEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKM-L-DNWAFDIEGLKAAVAAY-SGPSIVYLVNP 150 (354)
T ss_dssp HHHHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECC-C-TTSCCCHHHHHHHHHTC-SSCEEEEEESS
T ss_pred ChHHHHHHH--HHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecC-C-CCCCCCHHHHHHHhccC-CCCCEEEEeCC
Confidence 999999999 7777889999999999999999999999999999998 3 35789999999999842 12347788999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcC-CeEEEEecccccccccccccceEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADG-GECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
|||||.+++.+++++|+++| ++|+++|+||+|.++.++.. .... ....+.. +++++++||||.||++|+|+||+++
T Consensus 151 ~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~-~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 227 (354)
T 3ly1_A 151 NNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR-FRSI-SPMITQGAENIILLKTFSKIHAMAGMRVGYAVA 227 (354)
T ss_dssp CTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT-CCCS-HHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC
T ss_pred CCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc-cCCH-HHHhhhcCCCEEEEeeChhhccChhhhheeeec
Confidence 99999999999999999999 89999999999999987532 1122 2333334 7899999999999999999999986
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
.
T Consensus 228 ~ 228 (354)
T 3ly1_A 228 H 228 (354)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=241.43 Aligned_cols=221 Identities=15% Similarity=0.106 Sum_probs=170.3
Q ss_pred ChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 023599 27 IPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA 106 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~ 106 (280)
..+.+..+++ ...++|+|+.|++ ..+.+ +.+.++..+.. .....| +..+.++||+++++++.
T Consensus 20 ~~~~~~~~~~---~~~~~i~l~~~~~----~~~~~-~~v~~a~~~~~---~~~~~y-~~~~~~~lr~~la~~~~------ 81 (363)
T 3ffh_A 20 KREEEVMAEL---GLTKITKLSSNEN----PLGTS-KKVAAIQANSS---VETEIY-PDGWASSLRKEVADFYQ------ 81 (363)
T ss_dssp CHHHHHHHTT---TCSCCEECSSCSC----TTCCC-HHHHHHHHTCB---SCCCBC-----CHHHHHHHHHHHT------
T ss_pred CCHHHHHHhc---CCCceEEccCCCC----CCCCC-HHHHHHHHHHH---HHhhcC-CCcchHHHHHHHHHHhC------
Confidence 3443444344 3358999999983 33333 44444444322 123334 66789999999999974
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
..++++++ |+|+++++.++ +..++.+||+|+++.|+|..+...++..|++++.++. ++ ++.+|++.+++++.++
T Consensus 82 ~~~~~v~~--~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~-~~~~d~~~l~~~i~~~ 155 (363)
T 3ffh_A 82 LEEEELIF--TAGVDELIELL--TRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPL-LQ-DGEHDLEGMLNAIDEK 155 (363)
T ss_dssp CCGGGEEE--ESSHHHHHHHH--HHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEEC-CT-TSCCCHHHHHHHCCTT
T ss_pred CChhhEEE--eCCHHHHHHHH--HHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecC-CC-CCCcCHHHHHHhcccC
Confidence 23578888 99999999999 7777889999999999999999999999999999998 33 6789999999998654
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
..++++++||||||.+++.+++.+|++.|++ |+++|+||+|.++.+ .. ..+.....+..+++++++||||.+|
T Consensus 156 ---~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~--~~~~~~~~~~~~~~i~~~s~sK~~g 228 (363)
T 3ffh_A 156 ---TTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ--PEKHEKLVRTYKNLIITRTFSKIYG 228 (363)
T ss_dssp ---EEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC--CCCCGGGGGTCTTEEEEEESSSTTC
T ss_pred ---CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc--ccCHHHHhhcCCCEEEEeechhhhc
Confidence 3488889999999999999999999998888 999999999998887 21 1111233345679999999999999
Q ss_pred ccccccceEEEE
Q 023599 267 LYGERVGALSVV 278 (280)
Q Consensus 267 ~~G~RvG~~v~~ 278 (280)
++|+|+||+++.
T Consensus 229 ~~G~r~G~~~~~ 240 (363)
T 3ffh_A 229 LASARVGYGIAD 240 (363)
T ss_dssp CSSCCCEEEEEC
T ss_pred CchhceeeeecC
Confidence 999999999874
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=241.89 Aligned_cols=211 Identities=16% Similarity=0.131 Sum_probs=167.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+++.|+|+.|.+ + .+.++...+...+.+. .. ..+|.+..|.++||+++++++....+....++++++ |+|
T Consensus 27 ~g~~~i~l~~~~~-~---~~~~~~v~~a~~~~~~--~~-~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~--~~g 97 (370)
T 2z61_A 27 EGKKVIHLEIGEP-D---FNTPKPIVDEGIKSLK--EG-KTHYTDSRGILELREKISELYKDKYKADIIPDNIII--TGG 97 (370)
T ss_dssp TTCCCEECCCCSC-S---SCCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEE--ESS
T ss_pred cCCCEEEccCCCC-C---CCCCHHHHHHHHHHHH--cC-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEE--CCC
Confidence 3567899999985 2 2233334444444443 22 456888889999999999998654444456788988 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +..++.+||+|++++|+|..+...++..|++++.++ +|++.+++++.++ ..++++++||
T Consensus 98 ~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~~---~~~v~~~~p~ 164 (370)
T 2z61_A 98 SSLGLFFA--LSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSDK---TKAIIINSPS 164 (370)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCSS---EEEEEEESSC
T ss_pred hHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhcccC---ceEEEEcCCC
Confidence 99999999 777788999999999999999999999999988876 5899999988653 3477789999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+ |+++|+++|+++|+||+|.++.++. ...++..+.+..+++++++||||.+|++|+|+||+++.
T Consensus 165 nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 237 (370)
T 2z61_A 165 NPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEG--KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISN 237 (370)
T ss_dssp TTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSS--CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCC--CCcCHHHccCCCCcEEEEecChhccCCccceEEEEEEC
Confidence 9999999987 8999999999999999999998753 12222333223468999999999999999999999865
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=260.82 Aligned_cols=213 Identities=12% Similarity=0.085 Sum_probs=165.4
Q ss_pred eeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCC-Cc---cccCCCeEEeeccc
Q 023599 44 KLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGAD-SP---AIKENRVSTVQCLS 119 (280)
Q Consensus 44 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~-~~---~~~~~~i~~v~t~g 119 (280)
+|+|+.|.+ +. .++..++++.+.+. ..+|++..|.+.||+++++++.... .. ...+++|++ |+|
T Consensus 106 ~i~l~~g~~----~~-~~~~~~~al~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~--t~G 173 (546)
T 2zy4_A 106 SLSYVRDQL----GL-DPAAFLHEMVDGIL-----GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFA--VEG 173 (546)
T ss_dssp HHHHHHHTS----CC-CHHHHHHHHHHHHH-----TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEE--EEH
T ss_pred hhecccCCC----CC-CChHHHHHHHHhhh-----cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEE--ECC
Confidence 789999985 32 23344454444443 3579999999999999888754332 11 124688888 999
Q ss_pred chhHHHHHHHHHH-----hhcCCCEEEEeCCCCCChHHHHHH--cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEE
Q 023599 120 GSGSLRIGADFLA-----KHYYQHTVYLSQPTYGNHPNFFAA--AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIV 192 (280)
Q Consensus 120 ~~~al~~~~~~~~-----~~~~Gd~Vli~~P~y~~~~~~~~~--~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 192 (280)
+++++.++ +.. ++.+||+|++++|+|..|...+.. .|++++.+++..+.+|.+|++.+++.+.++ ..+
T Consensus 174 ~~eal~~~--~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~k~ 248 (546)
T 2zy4_A 174 GTAAMAYI--FESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPA---IKI 248 (546)
T ss_dssp HHHHHHHH--HHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTT---EEE
T ss_pred HHHHHHHH--HHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCC---CeE
Confidence 99999999 544 467999999999999999887553 468899999843335789999998876433 347
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHH--HhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 193 LLQASGHNPTGIDPTAQQWEQIRQLM--RLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 193 v~~~~p~NPTG~~~~~~~l~~i~~~~--~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
++++|||||||.+++.+++++|+++| ++++++||+||+|.++.++ ..++... ..+++|+++||||+||++|+
T Consensus 249 v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~----~~s~~~~--~~~~~i~~~S~SK~~g~~Gl 322 (546)
T 2zy4_A 249 FFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD----FQSLFAI--CPENTLLVYSFSKYFGATGW 322 (546)
T ss_dssp EEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT----CCCHHHH--CGGGEEEEEESTTTTTCGGG
T ss_pred EEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc----CcCHHHh--CCCCEEEEEeCccccCCCCc
Confidence 88889999999999999999999999 7899999999999999864 1222332 12589999999999999999
Q ss_pred ccceEEEEc
Q 023599 271 RVGALSVVR 279 (280)
Q Consensus 271 RvG~~v~~~ 279 (280)
|+||+++..
T Consensus 323 RiG~~~~~~ 331 (546)
T 2zy4_A 323 RLGVVAAHQ 331 (546)
T ss_dssp CEEEEEEES
T ss_pred ceEEEEECC
Confidence 999999864
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=245.46 Aligned_cols=230 Identities=15% Similarity=0.125 Sum_probs=177.9
Q ss_pred HHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcccc
Q 023599 29 IYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIK 108 (280)
Q Consensus 29 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~ 108 (280)
+.+.+.+... .+.+.|+|+.|.+ ..+.++...++ .+.+. .. ..+|.+..|..+||+++++++....+....
T Consensus 31 ~~~~~~~~~~-~g~~~i~l~~~~~----~~~~~~~v~~a-~~~l~--~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~ 101 (409)
T 2gb3_A 31 LVPFAEMAKK-RGVRIHHLNIGQP----DLKTPEVFFER-IYENK--PE-VVYYSHSAGIWELREAFASYYKRRQRVDVK 101 (409)
T ss_dssp GHHHHHHHHH-TTCEEEECSSCCC----CSCCCTHHHHH-HHHTC--CS-SCCCCCTTCCHHHHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHh-cCCCEEeccCCCC----CCCCCHHHHHH-HHHHh--cC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCC
Confidence 3444444433 4567999999995 22234444444 44443 22 356888889999999999998765554556
Q ss_pred CCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC
Q 023599 109 ENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 109 ~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~ 188 (280)
++++++ |+|+++|+.++ +..++.+||+|+++.|+|..+...++..|++++.++..+++++.+ ++.|++++.++
T Consensus 102 ~~~v~~--~~g~t~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~-- 174 (409)
T 2gb3_A 102 PENVLV--TNGGSEAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINER-- 174 (409)
T ss_dssp GGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTT--
T ss_pred HHHEEE--eCCHHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcC--
Confidence 788888 99999999999 777788999999999999999999999999999999832134444 78888877643
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 268 (280)
.+++++++|+||||.+++.+++++|+++|+++|+++|+||+|..+.++.. ..++ +.+..++.++++|+||.+|++
T Consensus 175 -~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~--~~~~--~~~~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 175 -TKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE--FASA--LSIESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp -EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCG--GGSCCTTEEEEEESTTTTTCG
T ss_pred -CeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC--CCCc--cccCCCCEEEEecchhccCCc
Confidence 34778889999999999999999999999999999999999999887531 1111 222345799999999999999
Q ss_pred ccccceEEEEc
Q 023599 269 GERVGALSVVR 279 (280)
Q Consensus 269 G~RvG~~v~~~ 279 (280)
|+|+||+++..
T Consensus 250 G~r~G~~~~~~ 260 (409)
T 2gb3_A 250 GARVGCLITRN 260 (409)
T ss_dssp GGCCEEEECSC
T ss_pred cceEEEEEECc
Confidence 99999998653
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-32 Score=243.71 Aligned_cols=222 Identities=13% Similarity=0.104 Sum_probs=174.8
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.++|+|+.|++ ..+.++...++..+.+. .. ..+|.+. ..++++++++++....+....+++|++ |+|+
T Consensus 26 g~~~i~~~~~~~----~~~~~~~v~~a~~~~~~--~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~--~~g~ 94 (391)
T 3dzz_A 26 KEKELPMWIAEM----DFKIAPEIMASMEEKLK--VA-AFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVF--ASGV 94 (391)
T ss_dssp CTTCEECCSSCC----SSCCCHHHHHHHHHHHT--TC-CCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEE--ESCH
T ss_pred CCCceeccccCC----CCCCCHHHHHHHHHHHh--cC-cCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--CCCH
Confidence 458999999984 33344444444444443 22 4567665 789999999998665444456789988 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee-cCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY-DPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++. .+.++.+|++.+++++++. +..++++++|+
T Consensus 95 ~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~i~~p~ 170 (391)
T 3dzz_A 95 VPAISAM--VRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP--SVRMMVFCNPH 170 (391)
T ss_dssp HHHHHHH--HHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST--TEEEEEEESSB
T ss_pred HHHHHHH--HHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc--CceEEEEECCC
Confidence 9999999 77778899999999999999999999999999999983 1333558999999999732 23477889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|+++|++||+++|+||+|.++.+... ...++..+.. ..++++++.|+||.+|++|+|+||+++.
T Consensus 171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~ 249 (391)
T 3dzz_A 171 NPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE-DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIP 249 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECC
T ss_pred CCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC-CceehhhcCccccCcEEEEEeChhhccccchhheEEEEC
Confidence 9999999999999999999999999999999999988532 2222333321 1358999999999999999999999875
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-32 Score=244.25 Aligned_cols=220 Identities=9% Similarity=0.080 Sum_probs=174.4
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.++|+|+.|++ ..+.++...++..+.+. .. .+.|.+ +..++++++++++....+..+.++++++ |+|+
T Consensus 31 ~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~--~~-~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~--~~g~ 99 (391)
T 4dq6_A 31 TNDLLPMWVADM----DFKAAPCIIDSLKNRLE--QE-IYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIY--SPGV 99 (391)
T ss_dssp CSCSEECCSSSC----SSCCCHHHHHHHHHHHT--TC-CCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred CCCceeccccCC----CCCCCHHHHHHHHHHHh--CC-CCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEE--cCCh
Confidence 468999999983 33344444444444443 22 345654 6789999999997655443445688988 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee--cCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY--DPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++. .+.++.+|++.+++++.+ ..++++++|
T Consensus 100 ~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~v~i~~p 173 (391)
T 4dq6_A 100 IPAISLL--INELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD----VKLFILCNP 173 (391)
T ss_dssp HHHHHHH--HHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT----EEEEEEESS
T ss_pred HHHHHHH--HHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc----CCEEEEECC
Confidence 9999999 77778899999999999999999999999999999983 233466899999999876 347888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-hcCCeEEEEecccccccccccccceEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV-ADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...++..+. +..+++++++|+||.+|++|+|+||+++
T Consensus 174 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 252 (391)
T 4dq6_A 174 HNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH-KHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVL 252 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC-CccCHHHcCccccCcEEEEEechhhccCcccceEEEEe
Confidence 99999999999999999999999999999999999988532 222233331 1235899999999999999999999987
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
.
T Consensus 253 ~ 253 (391)
T 4dq6_A 253 P 253 (391)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-32 Score=246.14 Aligned_cols=221 Identities=12% Similarity=0.049 Sum_probs=170.7
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.++|+|+.|++ +.+ +++.+.++..+... .. ..+|.+. .++||+++++++....+....+++|++ |+|++
T Consensus 31 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~-~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--t~g~~ 99 (399)
T 1c7n_A 31 NEVVPLSVADM----EFK-NPPELIEGLKKYLD-ET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIIN--TAGVV 99 (399)
T ss_dssp TTCCCCCSSSC----SSC-CCHHHHHHHHHHHH-HC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESSHH
T ss_pred CCceeeeecCC----CCC-CCHHHHHHHHHHHh-cC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEE--cCCHH
Confidence 47899999984 333 33444444444331 22 3557654 899999999997543332344688888 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC-CCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK-TNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+++.++ +.+++.+||+|+++.|+|..+...++..|++++.+++.+++ ++.+|++.+++++.+. +..++++++|||
T Consensus 100 ~a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~--~~~~v~~~~~~n 175 (399)
T 1c7n_A 100 PAVFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK--NNKALLFCSPHN 175 (399)
T ss_dssp HHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT--TEEEEEEESSBT
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccC--CCcEEEEcCCCC
Confidence 999999 77778899999999999999999999999999999873232 3558999999999732 234777899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|++||+++|+||+|.++.++.. ...++..+.. ..+++++++|+||.++++|+|+||+++.
T Consensus 176 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 253 (399)
T 1c7n_A 176 PVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY-EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIK 253 (399)
T ss_dssp TTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC-CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECC
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CcccHHHcCccccCcEEEEEeChhhccccchheEEEEEC
Confidence 999999999999999999999999999999999987532 2222333311 1368999999999999999999999875
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=241.20 Aligned_cols=236 Identities=18% Similarity=0.185 Sum_probs=179.5
Q ss_pred cccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhcc-CCCCCCCCCCCCCHHHHHHHHHH
Q 023599 20 QVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND-LSADKEYLPITGLPEFNKLSAKL 98 (280)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~G~~~lr~~ia~~ 98 (280)
+.....+..+....... ..++.|+|+.|.+ +.. ..+.+.+.++..+.... .....+|.+..|..+||++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~~i~l~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~ 86 (397)
T 2zyj_A 13 GAGRIQASTIRELLKLT---QRPGILSFAGGLP-APE--LFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEW 86 (397)
T ss_dssp GGGGCCCCHHHHHHHHH---TSTTCEEESSCCC-CGG--GCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHH
T ss_pred hhcccCchHHHHHHhhc---cCCCceecCCCCC-Cch--hCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHH
Confidence 33334444454444433 2457899999985 222 23455555544443311 11135688888999999999999
Q ss_pred HhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHH
Q 023599 99 IFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 99 l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 178 (280)
+ + ..+++|++ |+|+++++.++ +.+++.+||+|+++.|+|..+...++..|++++.++. +++ ++|++.
T Consensus 87 ~-g-----~~~~~v~~--~~g~~~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~--~~d~~~ 153 (397)
T 2zyj_A 87 I-G-----VRPEEVLI--TTGSQQALDLV--GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPA-GEE--GPDLDA 153 (397)
T ss_dssp H-T-----SCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEE-ETT--EECHHH
T ss_pred h-C-----CChhhEEE--eccHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCc-CCC--CCCHHH
Confidence 8 2 23578888 99999999999 7777889999999999999999999999999999998 343 489999
Q ss_pred HHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc--CCeE
Q 023599 179 MLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD--GGEC 255 (280)
Q Consensus 179 l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~--~~~~ 255 (280)
+++++++ +++ +++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...++..+... .+++
T Consensus 154 l~~~l~~~~~~--~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 230 (397)
T 2zyj_A 154 LEEVLKRERPR--FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA-RLPSLFELAREAGYPGV 230 (397)
T ss_dssp HHHHHHHCCCS--CEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC-CCCCHHHHHHHHTCCCE
T ss_pred HHHHHhhcCCe--EEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC-CCCchhhhCcccCCCeE
Confidence 9999986 333 3446899999999999999999999999999999999999999988532 22334444222 1689
Q ss_pred EEEecccccccccccccceEEEE
Q 023599 256 LVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 256 i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++++|+||.++ +|+|+||+++.
T Consensus 231 i~~~s~sK~~~-~G~r~G~~~~~ 252 (397)
T 2zyj_A 231 IYLGSFSKVLS-PGLRVAFAVAH 252 (397)
T ss_dssp EEEEESTTTTC-GGGCCEEEECC
T ss_pred EEEeccccccc-ccceeEEEecC
Confidence 99999999999 99999999874
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-32 Score=248.08 Aligned_cols=223 Identities=19% Similarity=0.186 Sum_probs=167.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHH-HHHhccCCCCCCC-CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAE-QLLVNDLSADKEY-LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y-~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
...|||+.|.| +....+.++...+++. ++.........+| .+..|.++||+++++++. +.+++|++ |+|
T Consensus 25 ~~~i~l~~g~p-~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~--t~G 95 (423)
T 3ez1_A 25 GLNLNMQRGQP-ADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLV--WNN 95 (423)
T ss_dssp TCCEESCCCCC-CHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEE--CSS
T ss_pred CceEecCCCCC-ChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEE--eCC
Confidence 46899999996 2111222222333221 1222112224679 888999999999999972 34588988 999
Q ss_pred chhHHH--HHHHHHHhhc--C---------CCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 120 GSGSLR--IGADFLAKHY--Y---------QHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 120 ~~~al~--~~~~~~~~~~--~---------Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
+++++. ++ +..++. + ||+|+++.|+|..+...++..|++++.+++ +++ ++|++.+++++.+.
T Consensus 96 ~~~al~~~~~--~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~--g~d~~~l~~~l~~~ 170 (423)
T 3ez1_A 96 SSLELQGLVL--TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDM-QSD--GPDVDAVERLAGTD 170 (423)
T ss_dssp CHHHHHHHHH--HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEE-ETT--EECHHHHHHHHHSC
T ss_pred cHHHHHHHHH--HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccC-CCC--CCCHHHHHHHHhhC
Confidence 999997 77 666667 7 599999999999999999999999999998 343 59999999999633
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH-HhCCceeEEcccCCCcccCc--CCChhHHHHh---hhcCCeEEEEec
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLM-RLKRLLPFFDCAYQGFVMNM--DADALPVRMF---VADGGECLVAQS 260 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~-~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~---~~~~~~~i~~~S 260 (280)
++.++++++++||||||.+++.+++++|+++| ++||++||+||+|..+.+.. .....++..+ .+..+++++++|
T Consensus 171 ~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 250 (423)
T 3ez1_A 171 PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFAS 250 (423)
T ss_dssp TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEE
T ss_pred CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeC
Confidence 22233445679999999999999999999999 99999999999999766532 1222233333 235579999999
Q ss_pred ccccccccccccceEEEEc
Q 023599 261 YSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 261 ~SK~~~~~G~RvG~~v~~~ 279 (280)
|||+ +++|+|+||+++..
T Consensus 251 ~sK~-~~~G~r~G~~~~~~ 268 (423)
T 3ez1_A 251 TSKI-TFAGAGLGFVASSE 268 (423)
T ss_dssp STTT-SCSSSSCEEEEECH
T ss_pred chhh-ccCCcceEEEEeCH
Confidence 9999 57999999998753
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-32 Score=245.49 Aligned_cols=232 Identities=16% Similarity=0.106 Sum_probs=169.2
Q ss_pred ChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHh-ccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCc
Q 023599 27 IPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLV-NDLSADKEYLPITGLPEFNKLSAKLIFGADSP 105 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~ 105 (280)
..++..+.++.. + ..+|+|+.|++ +....+.+....+.+.+.+. .......+|.+..|.++||+++++++.
T Consensus 19 ~~~~~~~~~l~~-~-~~~i~l~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~----- 90 (422)
T 3d6k_A 19 EEVTAKYAELKA-K-NLSLDLTRGKP-SAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG----- 90 (422)
T ss_dssp HHHHHHHHHHHH-T-TCCEECCCCSC-CHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHhc-c-CCeEeCCCCCC-ChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC-----
Confidence 345555555543 2 35899999995 21112233333322222211 011125679999999999999999982
Q ss_pred cccCCCeEEeecccchhHH--HHHHHHHHhhcC------------CCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCC
Q 023599 106 AIKENRVSTVQCLSGSGSL--RIGADFLAKHYY------------QHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKT 171 (280)
Q Consensus 106 ~~~~~~i~~v~t~g~~~al--~~~~~~~~~~~~------------Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~ 171 (280)
+++++|++ |+|+++++ .++ +..+..+ ||+|++++|+|..|...++..|++++.+++ +++
T Consensus 91 -~~~~~i~~--t~G~~~al~l~~~--~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~-~~~- 163 (422)
T 3d6k_A 91 -LPADLVVA--QDGSSLNIMFDLI--SWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPM-TDE- 163 (422)
T ss_dssp -CCGGGEEE--CSSCHHHHHHHHH--HHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEE-ETT-
T ss_pred -CChhHEEE--ecchHHHHHHHHH--HHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCC-CCC-
Confidence 34688988 99999997 555 4444445 347999999999999999999999999998 443
Q ss_pred CCcCHHHHHHHHhcCCCCcEEEE-ecCCCCCCCCCCCHHHHHHHHHHHH-hCCceeEEcccCCC--cccCcCCChhHHHH
Q 023599 172 NGLDFQGMLQDLGAAPSGAIVLL-QASGHNPTGIDPTAQQWEQIRQLMR-LKRLLPFFDCAYQG--FVMNMDADALPVRM 247 (280)
Q Consensus 172 ~~~d~~~l~~~~~~~~~~~~~v~-~~~p~NPTG~~~~~~~l~~i~~~~~-~~~~~ii~De~y~~--~~~~~~~~~~~~~~ 247 (280)
++|++.+++++.+. +..+++ +++||||||.+++.+++++|+++|+ +++++||+||+|.+ |.++ .....++..
T Consensus 164 -g~d~~~l~~~l~~~--~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~ 239 (422)
T 3d6k_A 164 -GPDMGVVRELVKDP--QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDE-FPIVHNVIE 239 (422)
T ss_dssp -EECHHHHHHHHTST--TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSC-CCCCCCHHH
T ss_pred -CCCHHHHHHHHhcC--CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCC-CCCCcChhh
Confidence 49999999998652 223544 8999999999999999999999999 99999999999986 4433 122223333
Q ss_pred h---hhcCCeEEEEecccccccccccccceEEEE
Q 023599 248 F---VADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 248 ~---~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ .+..+++++++||||+ ++||+|+||+++.
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~ 272 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASS 272 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECC
T ss_pred HhhccCCCCcEEEEcChhhh-cCcccceEEEEeC
Confidence 3 2345689999999999 6799999999875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=238.52 Aligned_cols=200 Identities=19% Similarity=0.170 Sum_probs=161.2
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.++|+|+.|+. ..+.++.. .+ . ...+|++. +.++||+++++++. +++++|++ |+|++
T Consensus 29 ~~~i~l~~~~~----~~~~~~~v------a~---~-~~~~Y~~~-~~~~lr~~la~~~~------~~~~~v~~--~~G~~ 85 (356)
T 1fg7_A 29 NGDVWLNANEY----PTAVEFQL------TQ---Q-TLNRYPEC-QPKAVIENYAQYAG------VKPEQVLV--SRGAD 85 (356)
T ss_dssp TCSEECSSCCC----SSCCCCCC------CC---C-CTTSCCCS-SCHHHHHHHHHHHT------SCGGGEEE--ESHHH
T ss_pred CceEEeeCCCC----CCCCCHhH------hh---h-hhccCCCc-cHHHHHHHHHHHhC------CChHHEEE--cCCHH
Confidence 36899999983 22223222 11 1 24567665 68999999999972 23578888 99999
Q ss_pred hHHHHHHHHHHhhcCC-CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAKHYYQ-HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~~~~G-d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++++ +.+++.+| |+|+++.|+|..|...++..|++++.+++ + +++.+|++.+++++. + .+++++++|||
T Consensus 86 ~ai~~~--~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~i~-~---~~~v~l~~p~n 157 (356)
T 1fg7_A 86 EGIELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT-L-DNWQLDLQGISDKLD-G---VKVVYVCSPNN 157 (356)
T ss_dssp HHHHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC-C-TTSCCCHHHHHTSCT-T---EEEEEEESSCT
T ss_pred HHHHHH--HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeC-C-CCCCCCHHHHHHHhc-C---CCEEEEeCCCC
Confidence 999999 77778899 99999999999999999999999999998 3 457899999998885 3 34788899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|+ +++++|+||+|.++... .++..+.+..+++++++||||.||++|+|+||+++.
T Consensus 158 ptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~-----~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 229 (356)
T 1fg7_A 158 PTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ-----ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN 229 (356)
T ss_dssp TTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG-----GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC-----CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeC
Confidence 9999999999999999999 99999999999988731 111233334568999999999999999999999874
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=234.32 Aligned_cols=210 Identities=21% Similarity=0.103 Sum_probs=169.8
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
..+.|+|+.|+ +..+.++...++..+.+. .....+|.. .|.++||+++++++... .+++|++ |+|+
T Consensus 29 ~~~~i~l~~~~----~~~~~~~~v~~a~~~~~~--~~~~~~y~~-~~~~~l~~~la~~~g~~-----~~~~i~~--~~g~ 94 (367)
T 3euc_A 29 SHGLVKLDAME----NPYRLPPALRSELAARLG--EVALNRYPV-PSSEALRAKLKEVMQVP-----AGMEVLL--GNGS 94 (367)
T ss_dssp CTTCEECCSSC----CCCCCCHHHHHHHHHHHH--HHHTTCSCC-CCHHHHHHHHHHHHTCC-----TTCEEEE--EEHH
T ss_pred CCCeeEccCCC----CCCCCCHHHHHHHHHHhh--hhhhhcCCC-CcHHHHHHHHHHHhCCC-----CcceEEE--cCCH
Confidence 46789999998 333444444444444443 112455655 58899999999997321 3478888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGH 199 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~ 199 (280)
++++.++ +..++.+||+|+++.|+|..+...++..|++++.+++ + +++.+|++.+++++.+ +++ ++++++||
T Consensus 95 t~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~l~~~~~~---~v~~~~~~ 167 (367)
T 3euc_A 95 DEIISML--ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPL-R-ADFTLDRGAMLAAMAEHQPA---IVYLAYPN 167 (367)
T ss_dssp HHHHHHH--HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEEC-C-TTSCCCHHHHHHHHHHHCCS---EEEEESSC
T ss_pred HHHHHHH--HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecC-C-CCCCCCHHHHHHHhhccCCC---EEEEcCCC
Confidence 9999999 7777889999999999999999999999999999998 3 3678999999999987 555 77778999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhC--CceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLK--RLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
||||.+++.+++++|+++|++| |+++|+||+|.++.... .. ...+..+++++++||||. +++|+|+||+++
T Consensus 168 nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~--~~----~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~ 240 (367)
T 3euc_A 168 NPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES--WM----SRLTDFGNLLVMRTVSKL-GLAGIRLGYVAG 240 (367)
T ss_dssp TTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC--SG----GGGGTCTTEEEEEECCCT-TSCSCCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc--hH----HHHhhCCCEEEEecchhh-cccccCceeeee
Confidence 9999999999999999999999 99999999999987532 11 122445689999999999 899999999987
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
.
T Consensus 241 ~ 241 (367)
T 3euc_A 241 D 241 (367)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=240.82 Aligned_cols=219 Identities=13% Similarity=-0.023 Sum_probs=166.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHH-HHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPE-FNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~-lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
++.|+|+.|.+ ..+ +++.+.++..+... . ...+|.+. .++ ||+++++++....+...++++|++ |+|+
T Consensus 28 ~~~i~l~~~~~----~~~-~~~~v~~a~~~~~~-~-~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~--t~g~ 96 (390)
T 1d2f_A 28 ADLLPFTISDM----DFA-TAPCIIEALNQRLM-H-GVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVY--GPSV 96 (390)
T ss_dssp --CEECCSSSC----SSC-CCHHHHHHHHHHHT-T-CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEE--ESCH
T ss_pred CCeeEeeecCC----CCC-CCHHHHHHHHHHHh-C-CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEE--cCCH
Confidence 47899999984 233 33444444444331 2 23557654 788 999999998654443345688888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC-CCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK-TNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
++++.++ +.+++.+||+|+++.|+|..+...++..|++++.+++..+. ++.+|++.+++++.+. +..++++++||
T Consensus 97 ~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~l~~p~ 172 (390)
T 1d2f_A 97 IYMVSEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP--ECKIMLLCSPQ 172 (390)
T ss_dssp HHHHHHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST--TEEEEEEESSC
T ss_pred HHHHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccC--CCeEEEEeCCC
Confidence 9999999 77778899999999999999999999999999999983222 3568999999999752 23477778999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|+++|++||+++|+||+|.++.++.. ...++..+....... ++||||.||++|+|+||+++.
T Consensus 173 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~d~--~~s~sK~~~~~G~r~G~~~~~ 248 (390)
T 1d2f_A 173 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ-PHIPWSNVARGDWAL--LTSGSKSFNIPALTGAYGIIE 248 (390)
T ss_dssp TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS-CCCCGGGTCCSSEEE--EECSHHHHTCGGGCCEEEEEC
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCcCHHHcchhhHhh--ccCccHhhcccChhheEEEEC
Confidence 9999999999999999999999999999999999987532 222223331111023 999999999999999999975
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-32 Score=255.29 Aligned_cols=214 Identities=14% Similarity=0.145 Sum_probs=172.4
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCC-CCCCCHHHHHHHHHHHhCC-CC-cccc-CCCeEEeecc
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYL-PITGLPEFNKLSAKLIFGA-DS-PAIK-ENRVSTVQCL 118 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~G~~~lr~~ia~~l~~~-~~-~~~~-~~~i~~v~t~ 118 (280)
++|+|+.|.+ ..+ +++.++++.+.+. . ..|+ +..|.++||+++++++... +. .... +++|++ |+
T Consensus 104 ~~i~l~~g~~----~~~-~~~~v~a~~~~~~--~---~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~--t~ 171 (533)
T 3f6t_A 104 DAVNYCHTEL----GLN-RDKVVAEWVNGAV--A---NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFP--TE 171 (533)
T ss_dssp HHHHHHHHTT----CCC-HHHHHHHHHHHHH--T---CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEE--EE
T ss_pred hheeccCCCC----CcC-CcHHHHHHHHHHH--h---CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEE--EC
Confidence 4689999985 222 5667777777766 2 2454 7889999999999998443 22 2222 478888 99
Q ss_pred cchhHHHHHHHHHH-----hhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeec--CCCCCcCHHHHHHHHhcCCCCcE
Q 023599 119 SGSGSLRIGADFLA-----KHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYD--PKTNGLDFQGMLQDLGAAPSGAI 191 (280)
Q Consensus 119 g~~~al~~~~~~~~-----~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~~~~~~~~~~ 191 (280)
|+++++.++ +.+ ++.+||+|+++.|+|..+...++..|++++.+++.. ++++++|++.+++++.++ .+
T Consensus 172 G~t~al~~~--~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~---~k 246 (533)
T 3f6t_A 172 GGTAAIVYA--FHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPS---IK 246 (533)
T ss_dssp HHHHHHHHH--HHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTT---EE
T ss_pred CHHHHHHHH--HHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCC---Ce
Confidence 999999999 655 678999999999999999999999999999998832 346889999999988654 34
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHH-hCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMR-LKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
++++++||||||.+++.+++++|+++|+ +|+++||+||+|.++.++. . ++... ..+++++++||||.||++|+
T Consensus 247 ~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~-~---~~~~~--~~~~~i~~~S~SK~~g~~G~ 320 (533)
T 3f6t_A 247 ALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF-K---SIYSV--VPYNTMLVYSYSKLFGCTGW 320 (533)
T ss_dssp EEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC-C---CHHHH--SGGGEEEEEESHHHHTCGGG
T ss_pred EEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc-c---CHhhc--CCCCEEEEecCcccCCCccc
Confidence 7788899999999999999999999999 6899999999999988752 1 22222 23689999999999999999
Q ss_pred ccceEEEEc
Q 023599 271 RVGALSVVR 279 (280)
Q Consensus 271 RvG~~v~~~ 279 (280)
|+||+++..
T Consensus 321 RiG~l~~~~ 329 (533)
T 3f6t_A 321 RLGVIALNE 329 (533)
T ss_dssp CEEEEEEES
T ss_pred ceEEEEECc
Confidence 999999864
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-32 Score=248.75 Aligned_cols=234 Identities=16% Similarity=0.101 Sum_probs=164.3
Q ss_pred ChHHHHHHHhhc-CCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccC---CCCCCCCCCCCCHHHHHHHHHHHhCC
Q 023599 27 IPIYAVMAAFRE-DPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL---SADKEYLPITGLPEFNKLSAKLIFGA 102 (280)
Q Consensus 27 ~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~G~~~lr~~ia~~l~~~ 102 (280)
..+...+..+.. ..++++|+|+.|.| ...+.+.+.+.++.+++..+. ...++|.+..|.++||+++++++...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~ 91 (417)
T 3g7q_A 15 SGITRLMEDLNDGLRTPGAIMLGGGNP---AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRET 91 (417)
T ss_dssp -CHHHHHHHHHC-----CCEECSCCCC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhccCCCceEecCcCC---CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHH
Confidence 345555555433 34578999999996 323445567776666654211 11247999999999999999998655
Q ss_pred CCccccCCCeEEeecccchhHHHHHHHHHHhhcCCC-----EEEEe-CCCCCChHHHHHHc------CCeeeEEEeecCC
Q 023599 103 DSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQH-----TVYLS-QPTYGNHPNFFAAA------GLAMKTYHYYDPK 170 (280)
Q Consensus 103 ~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd-----~Vli~-~P~y~~~~~~~~~~------G~~~~~v~~~~~~ 170 (280)
++..+.+++|++ |+|+++|++++ +..++.+|| +|+++ .|+|..+...+... +..+..++. +..
T Consensus 92 ~g~~~~~~~i~~--t~G~t~al~~~--~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 166 (417)
T 3g7q_A 92 LGWDIEPQNIAL--TNGSQSAFFYL--FNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPE-GQF 166 (417)
T ss_dssp HCCCCCGGGEEE--ESCHHHHHHHH--HHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGG-GEE
T ss_pred hCCCCCcccEEE--eCCcHHHHHHH--HHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCC-ccc
Confidence 555566799998 99999999999 777788987 99997 99999887665322 223333332 112
Q ss_pred CCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh
Q 023599 171 TNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA 250 (280)
Q Consensus 171 ~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 250 (280)
++.+|++.++ +.+ +.+++++++||||||.+++.+++++|+++|++||+++|+||+|..+........ ...+
T Consensus 167 ~~~~d~~~l~--~~~---~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~----~~~~ 237 (417)
T 3g7q_A 167 KYHVDFEHLH--IGE---ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSE----ARPL 237 (417)
T ss_dssp EEECCGGGCC--CCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSC----CCCC
T ss_pred ccccCHHHhc--ccc---CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccc----cccC
Confidence 3568888887 333 345889999999999999999999999999999999999999987443210000 0012
Q ss_pred cCCeEEEEecccccccccccccceEEEE
Q 023599 251 DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 251 ~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+++++++|||| ++++|+|+||+++.
T Consensus 238 ~~~~~i~~~s~sK-~~~~G~r~G~~~~~ 264 (417)
T 3g7q_A 238 WNPNIILCMSLSK-LGLPGSRCGIIIAN 264 (417)
T ss_dssp CCTTEEEEEESGG-GTCTTSCCEEEECC
T ss_pred CCCCEEEEEechh-ccCCCcceEEEEeC
Confidence 3468999999999 68899999998864
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-31 Score=236.10 Aligned_cols=182 Identities=18% Similarity=0.186 Sum_probs=157.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcC
Q 023599 79 DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAG 158 (280)
Q Consensus 79 ~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G 158 (280)
...|++..|.++||+++++++.+ ..++++++ |+||++|+.++ +.+++.+||+|+++.|+|..+...++..|
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~~-----~~~~~v~~--~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g 126 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYTG-----VKPEQILQ--TNGATGANLLV--LYSLIEPGDHVISLYPTYQQLYDIPKSLG 126 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSSS-----CCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESSCTHHHHHHHHTT
T ss_pred CcCCCCCCChHHHHHHHHHHhcc-----CChhhEEE--cCChHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcC
Confidence 56799999999999999998632 34588888 99999999999 77788999999999999999999999999
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
++++.+++..++++.+|++.++++++++++ ++++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+..
T Consensus 127 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~ 203 (375)
T 3op7_A 127 AEVDLWQIEEENGWLPDLEKLRQLIRPTTK---MICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD 203 (375)
T ss_dssp CEEEEEEEEGGGTTEECHHHHHHHCCTTCC---EEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSC
T ss_pred CEEEEEeccccCCCCCCHHHHHHhhccCCe---EEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccC
Confidence 999999984345677899999999976554 77888999999999999999999999999999999999999988751
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+ +.+..+++++++||||.++++|+|+||+++.
T Consensus 204 ---~~~---~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~ 237 (375)
T 3op7_A 204 ---VPS---IIEVYDKGIAVNSLSKTYSLPGIRIGWVAAN 237 (375)
T ss_dssp ---CCC---HHHHCTTEEEEEESSSSSSCGGGCCEEEECC
T ss_pred ---CCc---hhhhcCCEEEEeEChhhcCCcccceEEEEeC
Confidence 111 2233568899999999999999999999873
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=248.20 Aligned_cols=241 Identities=16% Similarity=0.096 Sum_probs=177.9
Q ss_pred CCChHHHHHHHhhc-CCCCCee-EeecceeecCCCCccchHHHHHHHHHHhcc-------C---CCCCCCCCCCCCHHHH
Q 023599 25 ADIPIYAVMAAFRE-DPSPMKL-NLGFGVYRTEEGKPLLLNAVRQAEQLLVND-------L---SADKEYLPITGLPEFN 92 (280)
Q Consensus 25 ~~~~~~~~~~~~~~-~~~~~~i-~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~y~~~~G~~~lr 92 (280)
++..+...+..+.. ...+++| +|+.|.| ...+.+.+.+.++.++...+ . ....+|.+..|.++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr 89 (444)
T 3if2_A 13 QPTGISQLMDDLGDALKSDQPVNMLGGGNP---AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFI 89 (444)
T ss_dssp SCCHHHHHHHHHHHHHHSSSCCEECSCCCC---CCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHH
T ss_pred CchhHHHHHHHHHhhhcCchhhhccCCCCC---CcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHH
Confidence 34556555543321 1336899 9999997 33344556777766665532 1 0125699999999999
Q ss_pred HHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCC--------------EEEEe-CCCCCChHHH----
Q 023599 93 KLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQH--------------TVYLS-QPTYGNHPNF---- 153 (280)
Q Consensus 93 ~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd--------------~Vli~-~P~y~~~~~~---- 153 (280)
+++++++...++..+.+++|++ |+|+++|++++ +..++.+|| +|+++ .|+|..|...
T Consensus 90 ~~ia~~l~~~~g~~~~~~~i~~--t~G~t~al~~~--~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~ 165 (444)
T 3if2_A 90 DALVGFFNRHYDWNLTSENIAL--TNGSQNAFFYL--FNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG 165 (444)
T ss_dssp HHHHHHHHHHHCCCCCGGGEEE--ESSHHHHHHHH--HHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS
T ss_pred HHHHHHHHhhcCCCCCHHHEEE--ecCcHHHHHHH--HHHHhCCCccccccccccccccceEEEeCCCCccchhhccccc
Confidence 9999998665555566799998 99999999999 777788888 78886 9999988763
Q ss_pred --HHHcCCeeeEEEeecCC----CCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE
Q 023599 154 --FAAAGLAMKTYHYYDPK----TNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF 227 (280)
Q Consensus 154 --~~~~G~~~~~v~~~~~~----~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~ 227 (280)
+...|..++.++. +++ ++.+|++.|++++...+.+.+++++++||||||.+++.+++++|+++|++||++||+
T Consensus 166 ~~~~~~~~~~~~~~~-~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 244 (444)
T 3if2_A 166 QHFAAVLPHIDEVTH-DGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLII 244 (444)
T ss_dssp CCEEECCCEEEEEEE-TTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred chhhccCceEEeccc-ccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 3456778888887 331 257899999998432112345888899999999999999999999999999999999
Q ss_pred cccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 228 DCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 228 De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||+|..+........ ......+++++++||||. +++|+|+||+++.
T Consensus 245 De~~~~~~~~~~~~~----~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~ 290 (444)
T 3if2_A 245 DNAYGMPFPNIIYSD----AHLNWDNNTILCFSLSKI-GLPGMRTGIIVAD 290 (444)
T ss_dssp ECTTCTTTTCCBCSC----CCCCCCTTEEEEEESTTT-TCGGGCCEEEECC
T ss_pred ECCCCCccccccccc----ccccCCCCEEEEechhhc-cCCCCceEEEEEC
Confidence 999986433210000 001234689999999997 7899999999864
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=241.70 Aligned_cols=222 Identities=12% Similarity=0.032 Sum_probs=175.7
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.+.|+|++|++ ..+.++..+++..+.+. .. .+.|.+. ..++++++++++....+..+.+++|++ |+|+
T Consensus 60 g~~~i~~~~~~~----~~~~~~~v~~a~~~~~~--~~-~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~--~~g~ 128 (421)
T 3l8a_A 60 NPELLQMWVADM----DFLPVPEIKEAIINYGR--EH-IFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILF--IDGV 128 (421)
T ss_dssp CTTCEECCSSCC----CSCCCHHHHHHHHHHHH--HC-CSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEE--ESCH
T ss_pred CCCeeecccCCC----CCCCCHHHHHHHHHHHh--cC-CcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEE--cCCH
Confidence 568999999984 33344444444444443 22 4556554 389999999998665554456788988 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee-cCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY-DPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
++|++++ +..++.+||+|+++.|+|..+...++..|.+++.+|+. .+.++.+|++.|++++.+. +.+++++++|+
T Consensus 129 ~ea~~~a--~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~--~~~~vil~~p~ 204 (421)
T 3l8a_A 129 VPAISIA--LQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN--NVKIYLLCSPH 204 (421)
T ss_dssp HHHHHHH--HHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT--TEEEEEEESSB
T ss_pred HHHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc--CCeEEEECCCC
Confidence 9999999 77778899999999999999999999999999999983 2334678999999999732 23478889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-hcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV-ADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++++|+++|++||+++|+||+|.++.+... ...++..+. +..++++++.|+||.|+++|+|+||+++.
T Consensus 205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~ 283 (421)
T 3l8a_A 205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN-THHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQ 283 (421)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcC
Confidence 9999999999999999999999999999999999988532 222333332 22468899999999999999999999875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=229.73 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=166.4
Q ss_pred cCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCC
Q 023599 24 AADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGAD 103 (280)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~ 103 (280)
.+++.+.+..+.+.. .+.++|+|+.|.. ....+ +.+.++..+... . ..+|.. .|.++||+++++++.
T Consensus 7 ~~g~~~~~~~~~~~~-~~~~~idl~~~~~----~~~~~-~~v~~a~~~~~~-~--~~~y~~-~~~~~l~~~la~~~~--- 73 (364)
T 1lc5_A 7 AHGGNIREPATVLGI-SPDQLLDFSANIN----PLGMP-VSVKRALIDNLD-C--IERYPD-ADYFHLHQALARHHQ--- 73 (364)
T ss_dssp SSSCCCHHHHHHHTS-CGGGSEECSSCCC----TTCCC-HHHHHHHHHTGG-G--GGSCCC-TTCHHHHHHHHHHHT---
T ss_pred CCCccHHHHHHhcCC-CccceEEeccccC----CCCCC-HHHHHHHHHHHH-H--hhcCCC-CCHHHHHHHHHHHHC---
Confidence 344555555555543 3457899999983 23333 444444444331 1 345644 589999999999972
Q ss_pred CccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 104 SPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 104 ~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
..+++|++ |+|+++++.++ +..+ +||+|+++.|+|..+...++..|++++.++...++++.+ ++.+.+.+
T Consensus 74 ---~~~~~v~~--~~g~~~al~~~--~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~ 143 (364)
T 1lc5_A 74 ---VPASWILA--GNGETESIFTV--ASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEAL 143 (364)
T ss_dssp ---SCGGGEEE--ESSHHHHHHHH--HHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHC
T ss_pred ---cCHHHEEE--CCCHHHHHHHH--HHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhc
Confidence 23478888 99999999999 5555 789999999999999999999999999999832123333 46566655
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
.++++ ++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++. ... ..+.+..+++++++|+||
T Consensus 144 ~~~~~---~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~---~~~~~~~~~~i~~~s~sK 216 (364)
T 1lc5_A 144 TPDLD---CLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE-TGF---IPALKDNPHIWVLRSLTK 216 (364)
T ss_dssp CTTCC---EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC-CCS---GGGCTTCTTEEEEEESTT
T ss_pred cCCCC---EEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc-cch---hhHhccCCCEEEEEECch
Confidence 43333 77889999999999999999999999999999999999999988741 111 122233458999999999
Q ss_pred cccccccccceEE
Q 023599 264 TMGLYGERVGALS 276 (280)
Q Consensus 264 ~~~~~G~RvG~~v 276 (280)
.+|++|+|+||++
T Consensus 217 ~~~~~G~r~G~~~ 229 (364)
T 1lc5_A 217 FYAIPGLRLGYLV 229 (364)
T ss_dssp TTTCTTTCCEEEE
T ss_pred hhcCCccceEEEE
Confidence 9999999999998
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=230.62 Aligned_cols=206 Identities=12% Similarity=0.123 Sum_probs=161.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.++++|+|+.|++ ..+.++...++..+.+. . ..+| +..+.++||+++++++. ..++++++ |+|
T Consensus 24 ~~~~~idl~~~~~----~~~~~~~v~~a~~~~~~--~--~~~y-~~~~~~~l~~~la~~~~------~~~~~i~~--~~g 86 (361)
T 3ftb_A 24 KGRELLDYSSNIN----PLGIPKSFLNNIDEGIK--N--LGVY-PDVNYRRLNKSIENYLK------LKDIGIVL--GNG 86 (361)
T ss_dssp ----CEETTCCCC----TTCSCHHHHTTHHHHHH--G--GGSC-CCTTCHHHHHHHHHHHT------CCSCEEEE--ESS
T ss_pred CCCCEEEecCCCC----CCCCCHHHHHHHHHHHH--H--hcCC-CCccHHHHHHHHHHHhC------CCcceEEE--cCC
Confidence 4568999999983 33334444444444443 1 2445 55789999999999972 23578888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +..+ |+|+++.|+|..+...++..|++++.+++ ++ +..++++.+++++.+ ++ ++++++||
T Consensus 87 ~t~al~~~--~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~l~~~l~~-~~---~v~i~~p~ 154 (361)
T 3ftb_A 87 ASEIIELS--ISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYL-DE-NMCIDYEDIISKIDD-VD---SVIIGNPN 154 (361)
T ss_dssp HHHHHHHH--HTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEEC-CT-TSCCCHHHHHHHTTT-CS---EEEEETTB
T ss_pred HHHHHHHH--HHHc----CcEEEecCChHHHHHHHHHcCCeEEEeec-Cc-ccCCCHHHHHHhccC-CC---EEEEeCCC
Confidence 99999999 5544 99999999999999999999999999998 33 346788999999876 44 78889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
||||.+++.+++++|+++|++||+++|+||+|.++.++ . . .+.....+..+++++++|+||.++++|+|+||+++
T Consensus 155 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~-~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~ 229 (361)
T 3ftb_A 155 NPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-P-S-SSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGIT 229 (361)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-T-T-SSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-c-c-cchhHhcccCCCEEEEeeChhhcCCCCcceeEEEe
Confidence 99999999999999999999999999999999999885 1 1 11123334456899999999999999999999883
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=230.90 Aligned_cols=213 Identities=17% Similarity=0.161 Sum_probs=163.1
Q ss_pred eeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhH
Q 023599 44 KLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGS 123 (280)
Q Consensus 44 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~a 123 (280)
.|+|+.|++ ..+.++...++..+.+........+|.+..+ .+||+++++++....+....+++|++ |+|++++
T Consensus 32 ~idl~~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~--~~G~~~a 104 (369)
T 3cq5_A 32 DIRLNTNEN----PYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWA--ANGSNEI 104 (369)
T ss_dssp SEECSSCCC----CSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEE--ESHHHHH
T ss_pred ceeccCCCC----CCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEE--CCChHHH
Confidence 499999984 2333444444444444311112456766655 79999999997543333345688888 9999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCC
Q 023599 124 LRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPT 202 (280)
Q Consensus 124 l~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPT 202 (280)
+.++ +.+++.+||+|++++|+|..+...++..|++++.++. ++++.+|++.+++++.+ +++ ++++++|||||
T Consensus 105 l~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~npt 177 (369)
T 3cq5_A 105 LQQL--LQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRAKQPD---IVFVTTPNNPT 177 (369)
T ss_dssp HHHH--HHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHHHCCS---EEEEESSCTTT
T ss_pred HHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhccCCC---EEEEeCCCCCC
Confidence 9999 7777889999999999999999999999999999997 34568999999999976 544 67779999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC-eEEEEecccccccccccccceEEEE
Q 023599 203 GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG-ECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 203 G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|.+++.+++++|++.| ++++|+||+|.++.++ .+. ..+.+..+ ++++++|+||.+|++|+|+||+++.
T Consensus 178 G~~~~~~~l~~l~~~~---~~~li~De~~~~~~~~--~~~---~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 178 GDVTSLDDVERIINVA---PGIVIVDEAYAEFSPS--PSA---TTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp CCCCCHHHHHHHHHHC---SSEEEEECTTGGGCCS--CCG---GGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred CCCCCHHHHHHHHHhC---CCEEEEECCchhhcCC--cch---HHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 9999988887776654 5999999999998753 111 22323334 8999999999999999999999875
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-32 Score=248.22 Aligned_cols=221 Identities=13% Similarity=0.075 Sum_probs=172.4
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.+.++|+.|++ +. +.++...++..+.+. .. ..+|.+. ..++|+++++++....+....+++|++ |+|++
T Consensus 31 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~--~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~--~~g~~ 99 (392)
T 3b1d_A 31 PQLLPAWIADM-DF---EVMPEVKQAIHDYAE--QL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVF--VEGVV 99 (392)
Confidence 37899999995 33 233333333333332 11 3456654 889999999998766554456788888 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC-CCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK-TNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+++.++ +..++.+||+|+++.|+|..+...++..|++++.+++.+++ ++.+|++.+++.+.+. +..++++++|||
T Consensus 100 ~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~--~~~~v~~~~~~n 175 (392)
T 3b1d_A 100 PAISIA--IQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEN--DVKLYLLCNPHN 175 (392)
Confidence 999999 77778899999999999999999999999999999883222 3668999999988632 123677799999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|+++|+++|+||+|.++.++.. ...++..+.. ..+++++++||||.||++|+|+||+++.
T Consensus 176 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 253 (392)
T 3b1d_A 176 PGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGH-EHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIE 253 (392)
Confidence 999999999999999999999999999999999988532 2333444422 1468999999999999999999999875
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=222.21 Aligned_cols=199 Identities=20% Similarity=0.149 Sum_probs=154.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
..+.|+|+.++ +..+.+ +.+.++..+.. .. ..+| +..|.++||+++++++. ..+++|++ |+|+
T Consensus 15 ~~~~i~l~~n~----~~~~~~-~~v~~a~~~~~--~~-~~~y-~~~~~~~lr~~la~~~~------~~~~~i~~--t~G~ 77 (337)
T 3p1t_A 15 AAQAVCLAFNE----NPEAVE-PRVQAAIAAAA--AR-INRY-PFDAEPRVMRKLAEHFS------CPEDNLML--VRGI 77 (337)
T ss_dssp CCCCEECSSCC----CCSCCC-HHHHHHHHHHG--GG-TTSC-CTTHHHHHHHHHHHHHT------SCGGGEEE--ESHH
T ss_pred CCCceEeeCCC----CCCCCC-HHHHHHHHHhh--hh-hccC-CCCchHHHHHHHHHHhC------cCHHHEEE--eCCH
Confidence 45789999987 444444 44445444443 12 3456 56799999999999973 23478888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +..+ +||+|++++|+|..+...++..|++++.+++ ++++.+|++.+++. . +..++++++|||
T Consensus 78 ~~~l~~~--~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~--~---~~~~v~i~~p~n 146 (337)
T 3p1t_A 78 DECFDRI--SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL--TDDLLLDPNDLAQV--S---RDDCVVLANPSN 146 (337)
T ss_dssp HHHHHHH--HHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECB--CTTSSBCHHHHTTC--C---TTEEEEEESSCT
T ss_pred HHHHHHH--HHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecC--CCCCCCCHHHHHhh--c---CCCEEEEeCCCC
Confidence 9999999 5554 9999999999999999999999999999998 34578999998875 2 234899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++.+| |+++++ +|+||+|.+|.+.... .....+++++++||||.||++|+|+||+++.
T Consensus 147 ptG~~~~~~~l~~l---~~~~~~-~ivDea~~~~~~~~~~-------~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~ 213 (337)
T 3p1t_A 147 PTGQALSAGELDQL---RQRAGK-LLIDETYVDYSSFRAR-------GLAYGENELVFRSFSKSYGLAGLRLGALFGP 213 (337)
T ss_dssp TTCCCCCHHHHHHH---HHHCSE-EEEECTTGGGSSCSSS-------CCCCBTTEEEEEESSSTTCCTTTCCEEEECC
T ss_pred CCCCCCCHHHHHHH---HHhCCc-EEEECCChhhcccccc-------ccccCCCEEEEeeCchhccCcchheEEEEeC
Confidence 99999999887665 556676 5669999988764211 1123468899999999999999999999864
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=218.12 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=152.0
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.++|||+.|++ ..+.++..+++..+.+. ....|++..+ ++||+++++++. ..+++|++ |+|+
T Consensus 14 g~~~id~~~~~~----~~~~~~~v~~a~~~~~~----~~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~--t~g~ 76 (350)
T 3fkd_A 14 SSEIVNFSTTVW----TDGDKDHLEKHLVENLN----CIRHYPEPDA-GTLRQMLAKRNS------VDNNAILV--TNGP 76 (350)
T ss_dssp --CCEECSCCSC----CCSCCHHHHHHHHHTGG----GGGSCCCTTC-HHHHHHHHHHTT------CCGGGEEE--ESHH
T ss_pred cccEEEccCCCC----CCCCCHHHHHHHHHhHh----HHhcCCCCcH-HHHHHHHHHHhC------cCHHHEEE--cCCH
Confidence 468999999983 33344444444333332 1356777666 899999999962 34578888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
++++.++ +..+. ||+|+++.|+|..+...++..|++++.+++. ++..++++ ++++ ++++++|||
T Consensus 77 ~~al~~~--~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~--------~~~~---~v~i~~p~n 140 (350)
T 3fkd_A 77 TAAFYQI--AQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSN-EDIGEADF--------SNMD---FCWLCNPNN 140 (350)
T ss_dssp HHHHHHH--HHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETT-SCGGGSCC--------TTCS---EEEEESSCT
T ss_pred HHHHHHH--HHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecC-CccccCcc--------CCCC---EEEEeCCCC
Confidence 9999999 66555 9999999999999999999999999999972 22123333 3333 777899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.+++++|+++|+++ +||+||+|.++.++..... ...+..+++++++||||.++++|+|+||+++.
T Consensus 141 ptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~----~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~ 212 (350)
T 3fkd_A 141 PDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP----ADIKGRKNLVMVYSFSHAYGIPGLRIGYIVAN 212 (350)
T ss_dssp TTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG----GGGTTCSSEEEEEESHHHHSCGGGCCEEEECC
T ss_pred CcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhh----HHhhcCCCEEEEecCchhccCcchheEeEEeC
Confidence 999999999999999998866 9999999999987532111 22344578999999999999999999999873
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=217.51 Aligned_cols=204 Identities=15% Similarity=0.136 Sum_probs=153.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCC-CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS-ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
+.++|+|+.|++ ..+.++...++..+.+.. .+ ....|+ ..+.++||+++++++. +.+++|++ |+|
T Consensus 25 ~~~~i~l~~~~~----~~~~~~~v~~a~~~~~~~-~~~~~~~y~-~~~~~~lr~~la~~~g------~~~~~i~~--t~g 90 (360)
T 3hdo_A 25 IASWIKLNTNEN----PYPPSPEVVKAILEELGP-DGAALRIYP-SASSQKLREVAGELYG------FDPSWIIM--ANG 90 (360)
T ss_dssp CTTSEECSSCCC----SSCCCHHHHHHHHHHHTT-TCGGGGSCC-CSSCHHHHHHHHHHHT------CCGGGEEE--ESS
T ss_pred ccceeeccCCCC----CCCCCHHHHHHHHHHHhc-ccchhhcCC-CCchHHHHHHHHHHhC------cCcceEEE--cCC
Confidence 457899999984 334444444444444431 11 134454 4477999999999983 34588888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCC
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGH 199 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~ 199 (280)
+++++.++ +.+++.+||+|+++.|+|..+...++..|++++.++. ++ ++.+ +.+++.+ +++ ++++++|+
T Consensus 91 ~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~-~~~~--~~l~~~~--~~~---~v~i~~p~ 159 (360)
T 3hdo_A 91 SDEVLNNL--IRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGL-TG-DFRI--AGFPERY--EGK---VFFLTTPN 159 (360)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECB-CT-TSSB--TTCCSSB--CSS---EEEEESSC
T ss_pred HHHHHHHH--HHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeC-CC-CCCH--HHHHhhc--CCC---EEEEeCCC
Confidence 99999999 7777899999999999999999999999999999998 33 3333 3333221 122 78889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++.+++. ++|+++|+++|+||+|.+|... .. ..+.+..+++++++|+||.||++|+|+||+++.
T Consensus 160 nptG~~~~~~~l~---~l~~~~~~~li~De~~~~~~~~---~~---~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 229 (360)
T 3hdo_A 160 APLGPSFPLEYID---ELARRCAGMLVLDETYAEFAES---NA---LELVRRHENVVVTRTLSKSYSLAGMRIGLAIAR 229 (360)
T ss_dssp TTTCCCCCHHHHH---HHHHHBSSEEEEECTTGGGSSC---CC---THHHHHCSSEEEEEESTTTTSCTTSCCEEEECC
T ss_pred CCCCCCcCHHHHH---HHHHHCCCEEEEECChHhhCCc---ch---hHHhccCCCEEEEecchHhhcCCccceeeEeeC
Confidence 9999999987764 5567889999999999987432 22 122344578999999999999999999999864
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=220.35 Aligned_cols=199 Identities=20% Similarity=0.166 Sum_probs=151.9
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.+.|+|+.|.+ ..+.++..+++..+.+. .....+|+. .+.+++|+++++++... .+++++|++ |+|++
T Consensus 19 ~~~i~l~~~~~----~~~~~~~v~~a~~~~~~--~~~~~~y~~-~~~~~lr~~la~~~~~~---~~~~~~v~~--~~G~~ 86 (335)
T 1uu1_A 19 RDKTYLALNEN----PFPFPEDLVDEVFRRLN--SDALRIYYD-SPDEELIEKILSYLDTD---FLSKNNVSV--GNGAD 86 (335)
T ss_dssp CCSEEESSCCC----SSCCCHHHHHHHHHTCC--GGGGGSCCC-SSCHHHHHHHHHHHTCS---SCCGGGEEE--ESSHH
T ss_pred CcceECCCCCC----CCCCCHHHHHHHHHHhh--hhhhhcCCC-CchHHHHHHHHHHcCCC---CCCHHHEEE--cCChH
Confidence 36799999984 23334444444333331 111345644 57999999999998543 234688888 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
+++.++ +..+ ||+|+++ |+|..+...++..|++++.+++ + +++.+|++.+ ++ .+++++++||||
T Consensus 87 ~al~~~--~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l-----~~---~~~v~l~~p~np 150 (335)
T 1uu1_A 87 EIIYVM--MLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPL-T-KDLRIPEVNV-----GE---GDVVFIPNPNNP 150 (335)
T ss_dssp HHHHHH--HHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCC-C-TTSCCCCCCC-----CT---TEEEEEESSCTT
T ss_pred HHHHHH--HHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEecc-C-CCCCCCHHHc-----CC---CCEEEEeCCCCC
Confidence 999999 5554 8999999 9999999999999999999988 3 3467888776 22 347788999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||.+++.+++++|+++| + ++|+||+|.++... .. ..+.+..+++++++||||.||++|+|+||+++.
T Consensus 151 tG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~---~~---~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 217 (335)
T 1uu1_A 151 TGHVFEREEIERILKTG---A-FVALDEAYYEFHGE---SY---VDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS 217 (335)
T ss_dssp TCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCC---CC---GGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred CCCCCCHHHHHHHHHhC---C-EEEEECcchhhcch---hH---HHHhhhCCCEEEEecchhhcCCcccCeEEEEeC
Confidence 99999999999998887 7 89999999987643 11 222244568999999999999999999999874
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=226.05 Aligned_cols=200 Identities=19% Similarity=0.128 Sum_probs=144.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhc-cC-CCCCCCCCCCCC-----HHHHHHHHHHHhCCCCccccC-CC
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVN-DL-SADKEYLPITGL-----PEFNKLSAKLIFGADSPAIKE-NR 111 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~y~~~~G~-----~~lr~~ia~~l~~~~~~~~~~-~~ 111 (280)
.++++|+|+.|.| +. +. ++.+..+..+... .. ....+|.+..|. ++||+++|+++. .++..+.+ ++
T Consensus 20 ~~~~~i~l~~g~p-~~---~~-~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~ 93 (391)
T 3bwn_A 20 MSDFVVNLDHGDP-TA---YE-EYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRY 93 (391)
T ss_dssp TTTSCEECSSCCC-GG---GH-HHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSE
T ss_pred CCCCeeEcCCCCC-CC---CC-CHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCe
Confidence 4567899999996 22 22 2344443311111 11 134679999998 999999999976 33444545 58
Q ss_pred eEEeecccchhHHHHHHHHHHhhcCCC----EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 112 VSTVQCLSGSGSLRIGADFLAKHYYQH----TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 112 i~~v~t~g~~~al~~~~~~~~~~~~Gd----~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
|++ |+|+++++.++ +.+++.+|| +|++++|+|..|...++..|++++.+++ +.++ ++ .+
T Consensus 94 i~~--t~G~~~al~~~--~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~--l~--------~~-- 156 (391)
T 3bwn_A 94 IVV--GTGSTQLCQAA--VHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEG-DAWG--FD--------KK-- 156 (391)
T ss_dssp EEE--EEHHHHHHHHH--HHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEE-ESTT--CC--------CC--
T ss_pred EEE--eCChHHHHHHH--HHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecC-CHHH--cC--------CC--
Confidence 888 99999999999 777788999 9999999999999999999999999988 4432 22 12
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
+.++++++|||||||.+++ +|++.+..++++||+||+|.+ + ...++. ...+++|+++||||+||+
T Consensus 157 -~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~---~~~~l~---~~~~~~i~~~S~SK~~g~ 221 (391)
T 3bwn_A 157 -GPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---P---HYTPIT---RRQDHDIMLFTFSKITGH 221 (391)
T ss_dssp -SCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---T---TTSCCC---CCBCCSEEEEEHHHHHSC
T ss_pred -CCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---C---CCCccc---cCCCCeEEEEechhhcCC
Confidence 2347778999999999996 344422223399999999974 1 111111 134689999999999999
Q ss_pred cccccceEEE
Q 023599 268 YGERVGALSV 277 (280)
Q Consensus 268 ~G~RvG~~v~ 277 (280)
+|+|+||+++
T Consensus 222 ~GlRiG~~~~ 231 (391)
T 3bwn_A 222 AGSRIGWALV 231 (391)
T ss_dssp GGGCEEEEEE
T ss_pred CccceEEEEe
Confidence 9999999987
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=207.71 Aligned_cols=212 Identities=11% Similarity=-0.002 Sum_probs=157.7
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+.+.|+|+.|++ .+.+.++...++..+.+.........|.+..|..++++++++++....+ .+++++ |+||
T Consensus 42 g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~~--~~gg 112 (398)
T 3a2b_A 42 GRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAIL--FSTG 112 (398)
T ss_dssp TEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEEE--ESSH
T ss_pred CceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEE--ECCH
Confidence 456899999874 2433444444444444432111233466677888888888887654432 257777 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC-CcEEEEecCCC
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS-GAIVLLQASGH 199 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~-~~~~v~~~~p~ 199 (280)
++|+.++ +..++.+||+|++++|+|..+...++..|++++.++. .|++.+++.+.+... +.+++++++|+
T Consensus 113 t~a~~~~--~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~ 183 (398)
T 3a2b_A 113 FQSNLGP--LSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIF 183 (398)
T ss_dssp HHHHHHH--HHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBC
T ss_pred HHHHHHH--HHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCC
Confidence 9999999 7777889999999999999999999999999998886 589999999976421 34588899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe-EEEEecccccccccccccceEEEE
Q 023599 200 NPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE-CLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 200 NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.+++ +++|+++|+++|+++|+||+|..+.++.. ..++....+..++ .++++||||.++++| ||+++.
T Consensus 184 nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~ 255 (398)
T 3a2b_A 184 SMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK--GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGD 255 (398)
T ss_dssp TTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEEC
T ss_pred CCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC--CCchHhhcCCCcCCeEEEecccccccCCC---cEEEeC
Confidence 99999987 67889999999999999999999877421 1122222232235 599999999999878 998874
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=207.26 Aligned_cols=198 Identities=13% Similarity=0.047 Sum_probs=157.4
Q ss_pred eeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCH---HHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 44 KLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLP---EFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 44 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~---~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
...+++|+| +....+...+.+.++.+.+.. ....+.|+. .|.+ +|++++++++.. +++++ ++||
T Consensus 20 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~-~~~~~~~~l~~~ia~~~g~--------~~~i~--~~~g 86 (404)
T 1e5e_A 20 DQFGAAIPP-IYQTSTFVFDNCQQGGNRFAG-QESGYIYTR-LGNPTVSNLEGKIAFLEKT--------EACVA--TSSG 86 (404)
T ss_dssp CTTCCSSCC-CCCCSBCCCSSHHHHHHHHTT-SSCSCCBTT-TCCHHHHHHHHHHHHHHTC--------SEEEE--ESSH
T ss_pred CCCCCcCCC-CcCCCccccCCHHHHHHhhcC-CcCCccccC-CcChHHHHHHHHHHHHhCC--------CcEEE--eCCh
Confidence 356888987 777777777777666554432 222456766 6777 899999999732 34555 8888
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEec
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQA 196 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~ 196 (280)
++|+.++ +.+++.+||+|+++.|.|..+.. .++..|++++.++. + |++.+++++.+++ ++|+++
T Consensus 87 ~~ai~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-~------d~~~l~~~i~~~t---~~v~l~ 154 (404)
T 1e5e_A 87 MGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT-A------IPGEVKKHMKPNT---KIVYFE 154 (404)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-T------STTHHHHHCCTTE---EEEEEE
T ss_pred HHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-C------CHHHHHHhcCCCC---cEEEEE
Confidence 9999999 77778999999999999998888 67789999999987 2 7889999886543 488899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-CCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccccc-ce
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRL-KRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GA 274 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~ 274 (280)
+|+||||.+++ +++|+++|++ +|+++|+||+|..+.+.. + + +. .+.+++.|+||.|+++|+|+ ||
T Consensus 155 ~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~--~------~-~~-~~di~~~S~sK~~~~~g~ri~G~ 221 (404)
T 1e5e_A 155 TPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN--P------V-DF-GVDVVVHSATKYINGHTDVVAGL 221 (404)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC--G------G-GG-TCSEEEEETTTTTTCSSCCCCEE
T ss_pred CCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC--c------c-cc-CCEEEEEcCccccCCCCCCeEEE
Confidence 99999999996 7888999999 999999999999987641 1 1 12 47789999999999999998 99
Q ss_pred EEEEc
Q 023599 275 LSVVR 279 (280)
Q Consensus 275 ~v~~~ 279 (280)
+++..
T Consensus 222 ~~~~~ 226 (404)
T 1e5e_A 222 ICGKA 226 (404)
T ss_dssp EEECH
T ss_pred EEECH
Confidence 98753
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-28 Score=219.74 Aligned_cols=198 Identities=13% Similarity=0.022 Sum_probs=146.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHh-ccCCCCCCCCCCC-C---CHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLV-NDLSADKEYLPIT-G---LPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~-G---~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
..+|+|+.|++ + . .+++.+.++..+.. ........|.+.. | .++||+++++++...+...+++++|++
T Consensus 56 ~~~i~l~~g~~-~---~-~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~-- 128 (427)
T 2hox_A 56 GCSADVASGDG-L---F-LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF-- 128 (427)
T ss_dssp TCCEECCSCCC-G---G-GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE--
T ss_pred CceEEecCcCC-C---C-CCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEE--
Confidence 46899999995 2 2 23344444444332 1111123488888 9 999999999998765544456789988
Q ss_pred cccchhHHHHHHHHHHh--------hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC
Q 023599 117 CLSGSGSLRIGADFLAK--------HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~--------~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~ 188 (280)
|+|+++++.++ +.++ +.+||+|+++.|+|..|...++..|++++.+. +|++.|++++.++
T Consensus 129 t~G~~~al~~~--~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~~~-- 196 (427)
T 2hox_A 129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA--------GNAANYVNVSNPE-- 196 (427)
T ss_dssp ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE--------EEGGGGTTCSCGG--
T ss_pred eCCHHHHHHHH--HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeec--------CCHHHHHHhhcCC--
Confidence 99999999999 7777 88999999999999999999999999887544 4667777766543
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 268 (280)
.++++++|||||||.+++ +. ++ ++.++.|+.|.+ . ..++..+. .+++|+++||||+||++
T Consensus 197 -~k~v~l~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~----~---~~s~~~~~--~~~~i~~~S~SK~~g~~ 256 (427)
T 2hox_A 197 -QYIEMVTSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW----P---HYTPIKYK--ADEDILLFTMSKFTGHS 256 (427)
T ss_dssp -GEEEEEESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS----T---TTSCCCSC--BCCSEEEEEHHHHTSCG
T ss_pred -ceEEEEcCCCCCcccccH-HH-------Hc--CCCEEEeecccC----C---CCCccccC--CCceEEEEeChhcCCCC
Confidence 347888999999999999 42 22 456677776643 1 11112221 46899999999999999
Q ss_pred ccccceEEEE
Q 023599 269 GERVGALSVV 278 (280)
Q Consensus 269 G~RvG~~v~~ 278 (280)
|+|+||+++.
T Consensus 257 G~RiG~~~~~ 266 (427)
T 2hox_A 257 GSRFGWALIK 266 (427)
T ss_dssp GGCCEEEEEC
T ss_pred CceEEEEEEC
Confidence 9999999974
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=197.06 Aligned_cols=207 Identities=12% Similarity=0.050 Sum_probs=149.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccC-------CCCCCCCCCCCCHHHHHH-HHHHHhCCCCccccCCCe
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-------SADKEYLPITGLPEFNKL-SAKLIFGADSPAIKENRV 112 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~y~~~~G~~~lr~~-ia~~l~~~~~~~~~~~~i 112 (280)
.++.+.|+.|.. ..+.+ +.+.++..+..... .....|.+..+.+++|++ +++++.. +++
T Consensus 6 ~~~~i~ld~~~~----~~~~~-~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~--------~~v 72 (371)
T 2e7j_A 6 TKDFINIDPLQT----GGKLT-EEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC--------DVA 72 (371)
T ss_dssp --CCEECCHHHH----TCCCC-HHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS--------SEE
T ss_pred CCCcEEeccccc----CCCCC-HHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC--------CEE
Confidence 346788888763 12233 33444444332111 112345677899999999 9999632 266
Q ss_pred EEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEE--eecCCCCCcCHHHHHHHHhcCC--C
Q 023599 113 STVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYH--YYDPKTNGLDFQGMLQDLGAAP--S 188 (280)
Q Consensus 113 ~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~--~~~~~~~~~d~~~l~~~~~~~~--~ 188 (280)
++ |+|+++|+.++ +..++.+||+|++++|+|..+...++..|++++.++ . ++++.+|++.+++++.+.. +
T Consensus 73 ~~--~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~ 146 (371)
T 2e7j_A 73 RV--TNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRG 146 (371)
T ss_dssp EE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTS
T ss_pred EE--eCChHHHHHHH--HHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccC
Confidence 66 99999999999 777788999999999999999999999999999999 6 3357899999999997321 1
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 268 (280)
+.+++++++|+||||.+++. ++|+++|+++|+++|+|++|..+.... + +..+ + ..++++|+||.++.
T Consensus 147 ~~~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~~--~---~~~~---~-~di~~~s~sK~~~~- 213 (371)
T 2e7j_A 147 EVVLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMPV--S---LKEI---G-ADFIVGSGHKSMAA- 213 (371)
T ss_dssp CEEEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBCC--C---HHHH---T-CSEEEEEHHHHSSC-
T ss_pred CeEEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCCC--C---hhhc---C-CCEEEecCCcCCCC-
Confidence 34589999999999999985 778899999999999999999876531 1 1222 1 23889999999984
Q ss_pred ccccceEEEEc
Q 023599 269 GERVGALSVVR 279 (280)
Q Consensus 269 G~RvG~~v~~~ 279 (280)
+.|+||+++..
T Consensus 214 ~~~~G~~~~~~ 224 (371)
T 2e7j_A 214 SGPIGVMGMKE 224 (371)
T ss_dssp CSSCEEEEECT
T ss_pred CCCcEEEEEec
Confidence 56999998864
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-25 Score=197.52 Aligned_cols=203 Identities=13% Similarity=0.053 Sum_probs=153.5
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCC----CCCCCCC--CCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS----ADKEYLP--ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~y~~--~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
+.++|+.|.+ + +.+...+++..+.+..... ....|++ ..+.+++|+++++++... +++++++
T Consensus 28 ~~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~-- 95 (420)
T 1t3i_A 28 PLVYLDNAAT----S-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-----SPREIVY-- 95 (420)
T ss_dssp ECEECBTTTC----C-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE--
T ss_pred ceEEecCCcc----C-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE--
Confidence 4799999985 2 3444444444444431110 1233543 467889999999997432 2478888
Q ss_pred cccchhHHHHHHHHHHh----hcCCCEEEEeCCCCCC----hHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC
Q 023599 117 CLSGSGSLRIGADFLAK----HYYQHTVYLSQPTYGN----HPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS 188 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~----~~~Gd~Vli~~P~y~~----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~ 188 (280)
|+||++|+.++ +..+ +.+||+|+++.|+|.. +...++..|++++.++. + +++.+|++.+++++.++
T Consensus 96 ~~g~t~a~~~~--~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~l~~~-- 169 (420)
T 1t3i_A 96 TRNATEAINLV--AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL-D-EQESFDLEHFKTLLSEK-- 169 (420)
T ss_dssp ESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB-C-TTSSBCHHHHHHHCCTT--
T ss_pred cCChHHHHHHH--HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc-C-CCCCcCHHHHHHhhCCC--
Confidence 99999999999 7776 7899999999999988 56677788999999998 3 45679999999998654
Q ss_pred CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccc
Q 023599 189 GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 189 ~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 268 (280)
.++|++++|+||||.+++ +++|.++|+++|+++|+|++|....... + +..+ ...+++.|+||.+|.+
T Consensus 170 -~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~--~---~~~~----~~di~~~s~sK~~~~~ 236 (420)
T 1t3i_A 170 -TKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYPL--D---VQLI----DCDWLVASGHKMCAPT 236 (420)
T ss_dssp -EEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCC--C---HHHH----TCSEEEEEGGGTTSCT
T ss_pred -ceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCccC--c---hhhc----CCCEEEEehhhhcCCC
Confidence 348888999999999998 6788999999999999999998654321 1 1222 2567899999999877
Q ss_pred ccccceEEEE
Q 023599 269 GERVGALSVV 278 (280)
Q Consensus 269 G~RvG~~v~~ 278 (280)
| +||+++.
T Consensus 237 g--~G~~~~~ 244 (420)
T 1t3i_A 237 G--IGFLYGK 244 (420)
T ss_dssp T--CEEEEEC
T ss_pred c--eEEEEEc
Confidence 8 9999874
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=190.45 Aligned_cols=206 Identities=12% Similarity=0.027 Sum_probs=147.7
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCC----CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS----ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
+...+||+.|.+ .+.+.++...++..+.+..... ....|....+..+||+++++++. . ++.++
T Consensus 38 g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-~------~~~i~--- 104 (384)
T 1bs0_A 38 DRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG-Y------SRALL--- 104 (384)
T ss_dssp TEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT-C------SEEEE---
T ss_pred CceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC-C------CcEEE---
Confidence 456889998872 2322334444443333331010 01122445678899999999972 1 24444
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEec
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQA 196 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~ 196 (280)
+++|++++..+ +..++.+||.|+++.|+|..+...++..|++++.+|. .|++.+++.+.+...+.++++++
T Consensus 105 ~~sGt~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~ 175 (384)
T 1bs0_A 105 FISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTE 175 (384)
T ss_dssp ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEE
T ss_pred eCCcHHHHHHH--HHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEe
Confidence 45558999998 7777889999999999999999999999999988875 47999999998653335688899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc-CCChhHHHHhhhcCCeEEEEecccccccccccccceE
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM-DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
+||||||.+++ +++|+++|+++|+++|+||+|..+.++. .... ....+...+ ++++||||.++.+| ||+
T Consensus 176 ~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~---~~~~~~~~d-i~~~s~sK~~~~~G---G~~ 245 (384)
T 1bs0_A 176 GVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS---CWLQKVKPE-LLVVTFGKGFGVSG---AAV 245 (384)
T ss_dssp SBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH---HHHTTCCCS-EEEEESSSTTSSCC---EEE
T ss_pred CCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCch---HHhcCCCCc-EEEeeccchhhccC---cEE
Confidence 99999999998 6778999999999999999998876531 1111 122222233 88999999999777 999
Q ss_pred EEE
Q 023599 276 SVV 278 (280)
Q Consensus 276 v~~ 278 (280)
++.
T Consensus 246 ~~~ 248 (384)
T 1bs0_A 246 LCS 248 (384)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=192.48 Aligned_cols=234 Identities=11% Similarity=0.046 Sum_probs=160.9
Q ss_pred ccccccCCChHHHHHHHhhcCCCCCeeEeeccee-ecCCCCc---cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHH
Q 023599 19 EQVARAADIPIYAVMAAFREDPSPMKLNLGFGVY-RTEEGKP---LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94 (280)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ 94 (280)
..+.......+....+.+.. .+.++++|+.|.+ .|..... ...+.+.+ .+. .. ...|.+..+..+||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~---a~~--~~-~~~y~~~~~~~~l~~~ 83 (456)
T 2ez2_A 11 KSVETVSMIPRDERLKKMQE-AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWA---GMM--MG-DEAYAGSENFYHLERT 83 (456)
T ss_dssp CCCCCCCCCCHHHHHHHHHH-TTTCGGGSCGGGCSEECSCSSSCCCCCHHHHH---HHT--TC-CCCSSSCHHHHHHHHH
T ss_pred eeecccCCCCHHHHHHHHHH-CCCCcccCCcccceeeeccccCCccCCHHHHH---Hhh--cc-hhhcccChhHHHHHHH
Confidence 33444433344444444432 3456677777753 2332211 22233322 232 22 2357778889999999
Q ss_pred HHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCC-CChHHHHHHcCCeeeEEEeec---CC
Q 023599 95 SAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTY-GNHPNFFAAAGLAMKTYHYYD---PK 170 (280)
Q Consensus 95 ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y-~~~~~~~~~~G~~~~~v~~~~---~~ 170 (280)
+++++.. +++++ |+||++|+.++ +.+++.+|| +++.|+| ..+...+...|++++.+++.. ++
T Consensus 84 la~~~~~--------~~~~~--~~~gt~a~~~a--l~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~ 149 (456)
T 2ez2_A 84 VQELFGF--------KHIVP--THQGRGAENLL--SQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAG 149 (456)
T ss_dssp HHHHHCC--------SEEEE--ESSHHHHHHHH--HHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTT
T ss_pred HHHHhCC--------CcEEE--eCCcHHHHHHH--HHHhCCCCC--EeccccccchhHHHHHHcCCEEEEeccccccccc
Confidence 9999732 45666 99999999999 777788999 7889999 777888889999999998831 11
Q ss_pred -----CCCcCHHHHHHHHhcCC-CCcEEEEecCCCC-CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC----------
Q 023599 171 -----TNGLDFQGMLQDLGAAP-SGAIVLLQASGHN-PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG---------- 233 (280)
Q Consensus 171 -----~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~N-PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~---------- 233 (280)
++.+|++.|++++.+++ .+.+++++++|+| |||.+++.+++++|+++|++||+++|+||+|..
T Consensus 150 ~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~ 229 (456)
T 2ez2_A 150 LNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQE 229 (456)
T ss_dssp CCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHS
T ss_pred ccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccc
Confidence 36789999999998654 2235888899999 999999999999999999999999999999986
Q ss_pred cccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 234 FVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+.+.. ....++........+++++ |++|..+ +| |.||++.
T Consensus 230 ~~~~g-~~~~~~~~~~~~~~d~~~~-S~kk~~~-~~-~gG~~~~ 269 (456)
T 2ez2_A 230 QGFEN-KSIAEIVHEMFSYADGCTM-SGKKDCL-VN-IGGFLCM 269 (456)
T ss_dssp TTCTT-SCHHHHHHHHHTTCSEEEE-ETTTTTC-CS-SCEEEEE
T ss_pred cccCC-cchhhhhhhhcccCCEEEE-eCcccCC-CC-ceeEEEE
Confidence 34432 2221111111222356665 7888765 77 8999886
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=190.87 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=151.5
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCC------CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEe
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADK------EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTV 115 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v 115 (280)
.+.+.|+.+.+ + +.++..+++..+.+........ .|.+..+.+++|+++++++... +++++++
T Consensus 22 ~~~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~~~~v~~- 90 (406)
T 1kmj_A 22 LPLAYLDSAAS----A-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-----SAEELVF- 90 (406)
T ss_dssp EECEECCTTTC----C-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-----CGGGEEE-
T ss_pred CceEEecCCcc----C-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCC-----CCCeEEE-
Confidence 35789999884 2 2344444444444432111111 1234567889999999997432 2478888
Q ss_pred ecccchhHHHHHHHHHHh----hcCCCEEEEeCCCCCCh----HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 116 QCLSGSGSLRIGADFLAK----HYYQHTVYLSQPTYGNH----PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~----~~~Gd~Vli~~P~y~~~----~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
|+|+++|+.++ +.++ +.+||+|+++.|+|... ...++..|++++.++. + +++.+|++.+++++.++
T Consensus 91 -~~g~t~a~~~~--~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~l~~~- 164 (406)
T 1kmj_A 91 -VRGTTEGINLV--ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL-N-PDGTLQLETLPTLFDEK- 164 (406)
T ss_dssp -ESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB-C-TTSCBCGGGHHHHCCTT-
T ss_pred -eCChhHHHHHH--HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEec-C-CCCCcCHHHHHHHhccC-
Confidence 99999999999 7776 78999999999998653 4456678999999998 3 35678999999998654
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
.++|++++|+||||.+++ +++|+++|+++|+++|+|++|....... + +.. . ...+++.|+||.+|.
T Consensus 165 --~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~~--~---~~~---~-~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 165 --TRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHPV--D---VQA---L-DCDFYVFSGHKLYGP 230 (406)
T ss_dssp --EEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCC--C---HHH---H-TCSEEEEEGGGTTSC
T ss_pred --CeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCCC--c---ccc---c-CCCEEEEEchhccCC
Confidence 348889999999999998 7788999999999999999998754321 1 121 1 356889999999998
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
+| +||+++.
T Consensus 231 ~G--~G~~~~~ 239 (406)
T 1kmj_A 231 TG--IGILYVK 239 (406)
T ss_dssp TT--CEEEEEC
T ss_pred CC--cEEEEEe
Confidence 88 8999875
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=191.43 Aligned_cols=167 Identities=11% Similarity=0.057 Sum_probs=132.2
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh----cCCCEEEEeCCCCCChHHHH---HH
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH----YYQHTVYLSQPTYGNHPNFF---AA 156 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~----~~Gd~Vli~~P~y~~~~~~~---~~ 156 (280)
...+.++||+++++++. ..++++++ |+|+++|+.++ +..+. .+||+|++++|+|..+...+ +.
T Consensus 42 ~~~~~~~l~~~la~~~g------~~~~~v~~--~~g~t~a~~~~--~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~ 111 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLG------VSPSEIFF--TSCATESINWI--LKTVAETFEKRKRTIITTPIEHKAVLETMKYLSM 111 (384)
T ss_dssp HHHHHHHHHHHHHHHHT------SCGGGEEE--ESCHHHHHHHH--HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC------CCCCeEEE--ECCHHHHHHHH--HHhhhhhccCCCCEEEECCCCchHHHHHHHHHHh
Confidence 34567899999999973 23478888 99999999999 66666 69999999999998876655 67
Q ss_pred cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCC--ceeEEcccCCCc
Q 023599 157 AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKR--LLPFFDCAYQGF 234 (280)
Q Consensus 157 ~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~--~~ii~De~y~~~ 234 (280)
.|++++.++. + +++.+|++.+++++.++ ..++++++|+||||.+++ +++|.++|++++ ++||+||+|. +
T Consensus 112 ~g~~~~~v~~-~-~~~~~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~-~ 182 (384)
T 1eg5_A 112 KGFKVKYVPV-D-SRGVVKLEELEKLVDED---TFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT-I 182 (384)
T ss_dssp TTCEEEECCB-C-TTSCBCHHHHHHHCCTT---EEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT-T
T ss_pred cCCEEEEEcc-C-CCCccCHHHHHHHhCCC---CeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh-c
Confidence 8999999998 3 35679999999998654 347888999999999999 567788999999 9999999997 2
Q ss_pred ccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 235 VMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
... .. .+... ...+++.|+||.+|++| +||+++..
T Consensus 183 ~~~---~~----~~~~~-~~di~~~s~sK~~g~~G--~G~~~~~~ 217 (384)
T 1eg5_A 183 GKI---PF----SLEKL-EVDYASFSAHKFHGPKG--VGITYIRK 217 (384)
T ss_dssp TTS---CC----CCTTT-CCSEEEEEGGGGTSCTT--CEEEEECT
T ss_pred CCc---cc----Cchhc-CCCEEEecHHHhcCCCc--eEEEEEcC
Confidence 111 10 11111 35688999999999888 79998754
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=189.10 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=149.9
Q ss_pred eEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCC--CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 45 LNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYL--PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 45 i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
..+++|.| +....+...+.+.++.+.... ....+.|. +..+..++++.+++++.. ++.++ +++|++
T Consensus 23 ~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~g~--------~~~i~--~~sG~~ 90 (398)
T 2rfv_A 23 STGALSTP-IFQTSTFVFDSAEQGAARFAL-EESGYIYTRLGNPTTDALEKKLAVLERG--------EAGLA--TASGIS 90 (398)
T ss_dssp TTCCSSCC-CCCCSBCCCSSHHHHHHHC------CCSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHH
T ss_pred CCCCcCCC-CcCCCccccCCHHHHHHhhcC-CCCCCceeCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHH
Confidence 45888887 677777777777666553221 11123343 445667899999988621 23444 666779
Q ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCC
Q 023599 123 SLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASG 198 (280)
Q Consensus 123 al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p 198 (280)
|+.++ +..++.+||+|+++.|+|..+...+ +..|++++.++. .|++.+++++.++ .+++++++|
T Consensus 91 a~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~~~---~~~v~~~~~ 158 (398)
T 2rfv_A 91 AITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIRAAMRPE---TKVVYIETP 158 (398)
T ss_dssp HHHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCCTT---EEEEEEESS
T ss_pred HHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHhcCCC---CeEEEEECC
Confidence 99999 7777889999999999999887776 778999998887 2799999988754 348888999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEE
Q 023599 199 HNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSV 277 (280)
Q Consensus 199 ~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~ 277 (280)
+||||.+++ +++|+++|+++|+++|+||+|..+.+.. . . .. ...+++.|+||.++.+|+|+ ||+++
T Consensus 159 ~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~--~----~---~~-~~di~~~s~sK~~~~~g~~~~G~~~~ 225 (398)
T 2rfv_A 159 ANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ--P----L---QL-GADIVVHSVTKYINGHGDVIGGIIVG 225 (398)
T ss_dssp BTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--G----G---GG-TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred CCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--c----h---hh-CCcEEEEeCcccccCCCCceEEEEEE
Confidence 999999996 7788999999999999999999877641 1 1 11 35688999999999999999 99987
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
.
T Consensus 226 ~ 226 (398)
T 2rfv_A 226 K 226 (398)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-24 Score=189.56 Aligned_cols=209 Identities=11% Similarity=-0.021 Sum_probs=144.8
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccC-C---CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-S---ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
+.+.|||+.|.+ .+...++...+...+.+..-. . ....|....+.++||+++++++.. ++.++
T Consensus 42 g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~~~i~--- 108 (399)
T 3tqx_A 42 EKEVLNFCANNY---LGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT-------DDTIL--- 108 (399)
T ss_dssp TEEEEECSSCCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-------SEEEE---
T ss_pred CeeEEEeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-------CcEEE---
Confidence 346899998864 232233334443333333101 1 011122333468999999998732 13444
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC---CcEEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS---GAIVL 193 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~---~~~~v 193 (280)
+++|++++.++ +..++.+||+|+++.|+|..+...++..|++++.++. .|++.+++.+.+... +.+++
T Consensus 109 ~~sGt~a~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v 179 (399)
T 3tqx_A 109 YSSCFDANGGL--FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLI 179 (399)
T ss_dssp ESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEE
T ss_pred ECchHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEE
Confidence 44557899988 7778899999999999999999999999999988886 367788888865311 45689
Q ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEeccccccccccccc
Q 023599 194 LQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 194 ~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~Rv 272 (280)
++++|+||||.+++ +++|+++|+++|+++|+||+|....+... . .+.....+. ....++++|+||.++ |.+.
T Consensus 180 ~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~-~-~~~~~~~~~~~~~di~~~s~sK~~~--g~~g 252 (399)
T 3tqx_A 180 ATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGEN-G-RGTPEYCGVADRVDILTGTLGKALG--GASG 252 (399)
T ss_dssp EEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT-S-CCHHHHHTCTTCCSEEEEESSSSSC--SSCC
T ss_pred EEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC-C-CchHHhhCCCCCCcEEEecchHhcc--cCce
Confidence 99999999999998 77889999999999999999974433211 1 112223221 245699999999998 4566
Q ss_pred ceEEEE
Q 023599 273 GALSVV 278 (280)
Q Consensus 273 G~~v~~ 278 (280)
||+++.
T Consensus 253 G~~~~~ 258 (399)
T 3tqx_A 253 GYTSGH 258 (399)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 998875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=184.48 Aligned_cols=207 Identities=13% Similarity=0.036 Sum_probs=148.5
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCC----CHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITG----LPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G----~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+.|||+.|.+ .+...++..++++.+.+.........|....| ..+|++.+++++ +. ++.++ +
T Consensus 64 ~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~-------~~~i~--~ 130 (427)
T 2w8t_A 64 KDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GT-------TGAIV--F 130 (427)
T ss_dssp EEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TC-------SEEEE--E
T ss_pred ceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CC-------CceEE--e
Confidence 45789988874 23333444444444444320111222333444 478999999987 22 23444 6
Q ss_pred ccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC-CcEEEEec
Q 023599 118 LSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS-GAIVLLQA 196 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~-~~~~v~~~ 196 (280)
++|++++..+ +..++.+||.|+++.|+|..+...++..|++++.++. .|++.+++++.+... +.++|+++
T Consensus 131 ~sGs~a~~~a--l~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~ 201 (427)
T 2w8t_A 131 STGYMANLGI--ISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLE 201 (427)
T ss_dssp SCHHHHHHHH--HHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred cCcHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEc
Confidence 6777888888 6677889999999999999999999999999887774 589999999976422 45688899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEecccccccccccccceE
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
+++||||.+++ +++|+++|++||+++|+||+|..+.++.. . ..+....+. .+..++++||||.+|++| ||+
T Consensus 202 ~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~-g-~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v 273 (427)
T 2w8t_A 202 GVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPN-G-RGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFV 273 (427)
T ss_dssp SEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTT-S-CCHHHHTTCTTCCSEEEEESSSTTCSCC---EEE
T ss_pred CCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCC-C-CchHhhcCCCcCCcEEEecchhhhccCC---CEE
Confidence 99999999998 67889999999999999999999877421 1 112222222 235899999999998777 999
Q ss_pred EEE
Q 023599 276 SVV 278 (280)
Q Consensus 276 v~~ 278 (280)
++.
T Consensus 274 ~~~ 276 (427)
T 2w8t_A 274 VSN 276 (427)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-24 Score=191.38 Aligned_cols=167 Identities=12% Similarity=0.087 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHhCCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTY 164 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v 164 (280)
..++++++++++....+. .++ ++++ |+|+++|+.++ +..++.+||+|++++|+|.. +...++..|++++.+
T Consensus 65 ~~~~~~~~~~~la~~~g~--~~~~~v~~--t~g~t~al~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v 138 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQT--ENPLTIAV--SGTGTAAMEAT--IANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTI 138 (393)
T ss_dssp HHHHHHHHHHHHHHHHTC--CCSCEEEE--SSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCC--CCCcEEEE--eCchHHHHHHH--HHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEE
Confidence 445666666664333221 345 7887 99999999999 77778899999999999998 888889999999999
Q ss_pred EeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 165 HYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++ + .++.+|++.+++++.+ +++ ++++++|+||||.+++ +++|+++|+++|+++|+||+|. +... +
T Consensus 139 ~~-~-~~~~~d~~~l~~~l~~~~~~---~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~-~g~~---~-- 204 (393)
T 1vjo_A 139 SK-P-WGEVFSLEELRTALETHRPA---ILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS-LGGV---P-- 204 (393)
T ss_dssp EC-C-TTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT-TTTS---C--
T ss_pred ec-C-CCCCCCHHHHHHHHhhCCce---EEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc-ccCc---C--
Confidence 98 3 3567999999999987 554 7888999999999987 6788999999999999999998 2211 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+ ......++++|+||.++.+| |+||+++.
T Consensus 205 --~~~-~~~~~di~~~s~sK~l~~~~-~~G~l~~~ 235 (393)
T 1vjo_A 205 --IFL-DAWGVDLAYSCSQKGLGCSP-GASPFTMS 235 (393)
T ss_dssp --CCT-TTTTCSEEECCSSSTTCSCS-SCEEEEEC
T ss_pred --Ccc-cccCccEEEEcCcccccCCC-ceEEEEEC
Confidence 111 12235688999999998788 99999875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=188.78 Aligned_cols=222 Identities=13% Similarity=0.092 Sum_probs=148.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCC-CCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS-ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+||+.|.....-++ +.+.+.++..+...... ....|++..+..+||+++++++.+ . .+++|++ |+
T Consensus 39 ~g~~~id~~~~~~~~~lg~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~----~~~~v~~--~~ 109 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGH--LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG-D----FAKKTLL--VT 109 (426)
T ss_dssp TCCEEEESSHHHHTCTTCB--TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC-S----SCEEEEE--ES
T ss_pred CCCEEEEcccChhhcccCC--CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc-c----cccEEEE--eC
Confidence 3456889988773111232 34444444444332111 112577788899999999999732 1 2378887 99
Q ss_pred cchhHHHHHHHHH-HhhcCCCEEEEeCCCCCChH-HHHHHcCCe-------------eeEEEeec---CCCCCcCHHHHH
Q 023599 119 SGSGSLRIGADFL-AKHYYQHTVYLSQPTYGNHP-NFFAAAGLA-------------MKTYHYYD---PKTNGLDFQGML 180 (280)
Q Consensus 119 g~~~al~~~~~~~-~~~~~Gd~Vli~~P~y~~~~-~~~~~~G~~-------------~~~v~~~~---~~~~~~d~~~l~ 180 (280)
||++|+.++.++. .+..+| +|++++|+|..+. ..+...|.+ ++.+++.. ..++.+|++.++
T Consensus 110 g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~ 188 (426)
T 1sff_A 110 TGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIH 188 (426)
T ss_dssp SHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHH
Confidence 9999999993311 456676 8999999997754 455555543 66677621 012346899999
Q ss_pred HHHhcC---CCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 181 QDLGAA---PSGAIVLLQASGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 181 ~~~~~~---~~~~~~v~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+++.+. .+.+++++.++++| || .+++.+++++|+++|++||++||+||+|.+|.+... .. .+ +.....+
T Consensus 189 ~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~---~~-~~~~~~~ 261 (426)
T 1sff_A 189 RIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--LF---AM-EQMGVAP 261 (426)
T ss_dssp HHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SS---GG-GGTTSCC
T ss_pred HHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc--hh---hh-hhcCCCC
Confidence 988741 12223444467888 99 889999999999999999999999999998866421 11 11 1111223
Q ss_pred EEecccccccccccccceEEEEc
Q 023599 257 VAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+.||||.++. |+|+||+++..
T Consensus 262 di~s~sK~~~~-GlriG~~~~~~ 283 (426)
T 1sff_A 262 DLTTFAKSIAG-GFPLAGVTGRA 283 (426)
T ss_dssp SEEEECGGGGT-SSCCEEEEEEH
T ss_pred CEEEEcccccC-CCceEEEEEcH
Confidence 35599999995 99999999863
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=187.82 Aligned_cols=169 Identities=12% Similarity=0.063 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEEEe
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTYHY 166 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~~ 166 (280)
.++++++++++....+.. .++++++ |+||++|+.++ +.+++.+||+|++++|+|.. +...++..|++++.++.
T Consensus 52 ~~~~~~~~~~la~~~g~~-~~~~v~~--~~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVE-KGEVLLV--PSSGTGIMEAS--IRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHHHHHTCS-SSEEEEE--SSCHHHHHHHH--HHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCC-CCcEEEE--eCChHHHHHHH--HHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEec
Confidence 456666666643332221 2466777 99999999999 77778899999999999987 88888899999999998
Q ss_pred ecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 167 YDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
+ .++.+|++.+++++.+.. +..++++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+.. +
T Consensus 127 -~-~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~--~----- 193 (386)
T 2dr1_A 127 -E-PGKAVKPEDLDDALRKNP-DVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGADI--K----- 193 (386)
T ss_dssp -C-TTCCCCHHHHHHHHHHCT-TCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBCC--C-----
T ss_pred -C-CCCCCCHHHHHHHHhcCC-CCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCccc--c-----
Confidence 3 356799999999995421 2237778899999999986 6788999999999999999998776531 1
Q ss_pred HhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ ......+++.|+||.++.++ ++||+++.
T Consensus 194 -~-~~~~~di~~~s~sK~~~~~~-g~G~~~~~ 222 (386)
T 2dr1_A 194 -F-DKWGLDVVFSSSQKAFGVPP-GLAIGAFS 222 (386)
T ss_dssp -T-TTTTCSEEEEETTSTTCCCS-SCEEEEEC
T ss_pred -c-cccCCcEEEEeccccccCCC-ceEEEEEC
Confidence 1 11235788999999998653 49999875
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=184.64 Aligned_cols=208 Identities=14% Similarity=0.135 Sum_probs=140.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+...+||+.+...+.-++ .++...++..+.+.. .......++.....+|++.+++++ + .+++++ |+||
T Consensus 39 g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~----g----~~~v~~--~~gg 106 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEK-LIHCSNLFWNRPQMELAELLSKNT----F----GGKVFF--ANTG 106 (397)
T ss_dssp CCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHH-CSCCCTTSEEHHHHHHHHHHHHTT----T----SCEEEE--ESSH
T ss_pred CCEEEECCccccccccCC-CCHHHHHHHHHHHHh-cccCccccCCHHHHHHHHHHHHhc----C----CCeEEE--eCCH
Confidence 456889988742122232 233344444343331 111111112223456777777664 1 378887 9999
Q ss_pred hhHHHHHHHHHHhhc------C-CCEEEEeCCCCCCh-HHHHHHcCCe------------eeEEEeecCCCCCcCHHHHH
Q 023599 121 SGSLRIGADFLAKHY------Y-QHTVYLSQPTYGNH-PNFFAAAGLA------------MKTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 121 ~~al~~~~~~~~~~~------~-Gd~Vli~~P~y~~~-~~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~ 180 (280)
++|+.++ +..+.. + +++|++.+|+|... ...++..|.+ +..++. .|++.++
T Consensus 107 ~~a~~~a--l~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~ 177 (397)
T 2ord_A 107 TEANEAA--IKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLR 177 (397)
T ss_dssp HHHHHHH--HHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHH
T ss_pred HHHHHHH--HHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHH
Confidence 9999999 554442 5 47899999999654 4466777765 555554 3899999
Q ss_pred HHHhcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEe
Q 023599 181 QDLGAAPSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQ 259 (280)
Q Consensus 181 ~~~~~~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (280)
+++.++ .++|++++|+||||. +++.+++++|+++|++||+++|+||+|.++.+... ..++..+ +...+++
T Consensus 178 ~~l~~~---~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~-~~~~d~~--- 248 (397)
T 2ord_A 178 RKMSED---VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK--LFAYQKY-GVVPDVL--- 248 (397)
T ss_dssp HHCCTT---EEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHHHHH-TCCCSEE---
T ss_pred HHhhcC---eEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc--chhhhhh-CCCCCee---
Confidence 988643 458888999999999 99999999999999999999999999998766421 2222222 2223443
Q ss_pred cccccccccccccceEEEEc
Q 023599 260 SYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v~~~ 279 (280)
||||.++ +|+|+||+++..
T Consensus 249 s~sK~~~-~G~r~G~~~~~~ 267 (397)
T 2ord_A 249 TTAKGLG-GGVPIGAVIVNE 267 (397)
T ss_dssp EECGGGG-TTSCCEEEEECS
T ss_pred eeccccC-CCcCeEEEEEch
Confidence 8899999 899999998754
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=183.51 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=139.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.|.+.+.-++ .++...++..+.+.. ......+++.....++++.+++++ ..+++++ |+|
T Consensus 37 ~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~--------~~~~v~~--~~g 104 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGH-AHPELREALNEQASK-FWHTGNGYTNEPVLRLAKKLIDAT--------FADRVFF--CNS 104 (406)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTT-CSCCCTTSCCHHHHHHHHHHHHHS--------SCSEEEE--ESS
T ss_pred CCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHh-cccccCCcCCHHHHHHHHHHHhhC--------CCCeEEE--eCc
Confidence 3457899998843222333 233344444444431 111112223334567777777774 1257777 999
Q ss_pred chhHHHHHHHHHHhhc-------CC-CEEEEeCCCCCChHHHHHHcCCe-------------eeEEEeecCCCCCcCHHH
Q 023599 120 GSGSLRIGADFLAKHY-------YQ-HTVYLSQPTYGNHPNFFAAAGLA-------------MKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~-------~G-d~Vli~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~~~ 178 (280)
|++|+.++ +..+.. +| |+|++++|+|..+.......+.. +..++. .|++.
T Consensus 105 g~~a~~~a--l~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~ 175 (406)
T 4adb_A 105 GAEANEAA--LKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINS 175 (406)
T ss_dssp HHHHHHHH--HHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHH
T ss_pred HHHHHHHH--HHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHH
Confidence 99999999 555543 66 99999999999886555544432 222322 47999
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCCCC--CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGIDP--TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~~~--~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+++++.++ .++++++ |+||||.++ +.+++++|+++|++||+++|+||+|.+|.+... ..+. ...+...+++
T Consensus 176 l~~~l~~~---~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~-~~~~~~~d~~ 248 (406)
T 4adb_A 176 ASALIDDS---TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE--LYAY-MHYGVTPDLL 248 (406)
T ss_dssp HHTTCSTT---EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHH-HHHTCCCSEE
T ss_pred HHHHhcCC---eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hHHH-HhcCCCCCEE
Confidence 99888643 3477777 999999998 999999999999999999999999998866432 1122 2223344555
Q ss_pred EEecccccccccccccceEEEE
Q 023599 257 VAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||||.++ +|+|+||+++.
T Consensus 249 ---t~sK~~~-~G~r~G~~~~~ 266 (406)
T 4adb_A 249 ---TTAKALG-GGFPVGALLAT 266 (406)
T ss_dssp ---EECGGGG-TTSCCEEEEEC
T ss_pred ---Eechhhc-CCCCeEEEEEc
Confidence 6799999 99999998865
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=185.56 Aligned_cols=184 Identities=10% Similarity=-0.003 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEE
Q 023599 62 LNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTV 140 (280)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~V 140 (280)
++.+++..+.+. .+ ...|.+..+..+||+++++++... +.|++ ++| ++|+.++ +.++ +.+||+|
T Consensus 17 ~~~~~a~~~~l~--~~-~~~~~~~~~~~~l~~~la~~~~~~-------~~i~~--~sG-t~al~~~--l~~l~~~~gd~V 81 (388)
T 1b9h_A 17 DAERNGLVRALE--QG-QWWRMGGDEVNSFEREFAAHHGAA-------HALAV--TNG-THALELA--LQVMGVGPGTEV 81 (388)
T ss_dssp HHHHHHHHHHHH--TS-CCBTTTCSHHHHHHHHHHHHTTCS-------EEEEE--SCH-HHHHHHH--HHHTTCCTTCEE
T ss_pred HHHHHHHHHHHH--cC-CeeecCCHHHHHHHHHHHHHhCCC-------eEEEe--CCH-HHHHHHH--HHHcCCCCcCEE
Confidence 444444444444 22 245777788999999999997321 44554 655 9999999 7777 7899999
Q ss_pred EEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh
Q 023599 141 YLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL 220 (280)
Q Consensus 141 li~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~ 220 (280)
+++.|+|..+...++..|++++.+++ +++++.+|++.+++++.+++ .+|+ |+||||.+.+ +++|.++|++
T Consensus 82 i~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~i~~~~---~~v~---~~n~tG~~~~---l~~i~~la~~ 151 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRLGAVTVPVDV-DAATYNLDPEAVAAAVTPRT---KVIM---PVHMAGLMAD---MDALAKISAD 151 (388)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCCTTE---EEEC---CBCGGGCCCC---HHHHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEec-CCCcCCCCHHHHHHhcCcCc---eEEE---EeCCccCcCC---HHHHHHHHHH
Confidence 99999999999999999999999998 55568899999999986542 3555 8999999875 5777889999
Q ss_pred CCceeEEcccCCCcc-cCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 221 KRLLPFFDCAYQGFV-MNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 221 ~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+|++||+|++|.... ++. .+ +... ..+.+.||||..+++|.|+||+++..
T Consensus 152 ~~~~li~D~a~~~g~~~~~-~~------~~~~--~~i~~~S~s~~K~l~g~~~G~~~~~~ 202 (388)
T 1b9h_A 152 TGVPLLQDAAHAHGARWQG-KR------VGEL--DSIATFSFQNGKLMTAGEGGAVVFPD 202 (388)
T ss_dssp HTCCBCEECTTCTTCEETT-EE------GGGS--SSCEEEECCTTSSSCSSSCEEEEECT
T ss_pred cCCEEEEecchhcCCccCC-ee------cccc--cceEEEEccCCCcccCCCeEEEEECC
Confidence 999999999998643 321 11 1111 25889999988888888999998753
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-23 Score=182.35 Aligned_cols=217 Identities=13% Similarity=0.075 Sum_probs=143.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccC-CCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-SADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+||+.|.+.+ ....+.+.+.++..+..... .....| +..+..+|++++++++ +. ++++++ |+
T Consensus 26 ~g~~~ld~~~~~~~~--~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~-g~------~~~v~~--~~ 93 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVN--SLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF-WT------EGKVFF--AN 93 (375)
T ss_dssp TCCEEEESSHHHHTC--TTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS-SS------CEEEEE--ES
T ss_pred CCCEEEEcCCccccc--ccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc-CC------CCeEEE--eC
Confidence 345789999998521 12213444444444333111 112345 4567889999999985 21 267777 99
Q ss_pred cchhHHHHHHHHH-Hhh---cCC-CEEEEeCCCCCChHHHHHHcCCeee----EEEeecCCC---CCcCHHHHHHHHhcC
Q 023599 119 SGSGSLRIGADFL-AKH---YYQ-HTVYLSQPTYGNHPNFFAAAGLAMK----TYHYYDPKT---NGLDFQGMLQDLGAA 186 (280)
Q Consensus 119 g~~~al~~~~~~~-~~~---~~G-d~Vli~~P~y~~~~~~~~~~G~~~~----~v~~~~~~~---~~~d~~~l~~~~~~~ 186 (280)
||++++.++.... .+. .+| |+|++++|+|..+...+...+.... ..++ ..+- ...|++.++++++++
T Consensus 94 g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~l~~~l~~~ 172 (375)
T 2eh6_A 94 SGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPL-VPGFSYAKLNDIDSVYKLLDEE 172 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC-CSSEEEECTTCHHHHHTTCCTT
T ss_pred chHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCC-CCCceeCCCchHHHHHHHhcCC
Confidence 9999999994321 234 688 9999999999988766554433211 0111 0000 014899999888643
Q ss_pred CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccc
Q 023599 187 PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTM 265 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 265 (280)
.+++++++++||||.+ .+.+++++|+++|+++|+++|+||+|.+|..... . .++..+ +...+++ ||||.+
T Consensus 173 ---~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~-~~~~~~-~~~~d~~---s~SK~~ 243 (375)
T 2eh6_A 173 ---TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-F-YAYQHF-NLKPDVI---ALAKGL 243 (375)
T ss_dssp ---EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-S-SGGGGG-TCCCSEE---EECGGG
T ss_pred ---eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-c-hhhhhc-CCCCCEE---EEcccc
Confidence 3478888899999999 5688899999999999999999999998765321 1 111211 2223444 889999
Q ss_pred cccccccceEEEEc
Q 023599 266 GLYGERVGALSVVR 279 (280)
Q Consensus 266 ~~~G~RvG~~v~~~ 279 (280)
+ +|+|+||+++..
T Consensus 244 ~-~g~~~G~~~~~~ 256 (375)
T 2eh6_A 244 G-GGVPIGAILARE 256 (375)
T ss_dssp G-TTSCCEEEEEEH
T ss_pred c-CCCCeEEEEEcH
Confidence 9 799999999763
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=180.37 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcC-------------CCEEEEeCCCCCChHHHHHH
Q 023599 90 EFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYY-------------QHTVYLSQPTYGNHPNFFAA 156 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~-------------Gd~Vli~~P~y~~~~~~~~~ 156 (280)
++++.+++++ + ..++++++ |+||++|+.++ +..+..+ ||+|+++.|+|..+...++.
T Consensus 73 ~l~~~la~~~----~--~~~~~i~~--~~ggt~a~~~~--~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~ 142 (397)
T 3f9t_A 73 KAVALLGSLL----N--NKDAYGHI--VSGGTEANLMA--LRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM 142 (397)
T ss_dssp HHHHHHHHHT----T--CTTCEEEE--ESCHHHHHHHH--HHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH
T ss_pred HHHHHHHHHh----C--CCCCCEEE--ecCcHHHHHHH--HHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH
Confidence 3445555553 2 23477777 99999999999 6665555 99999999999999999999
Q ss_pred cCCeeeEEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc
Q 023599 157 AGLAMKTYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV 235 (280)
Q Consensus 157 ~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~ 235 (280)
.|++++.++. + +++.+|++.+++++.+ +++ ++++++|+||||.+.+ +++|.++|++||+++|+||+|..+.
T Consensus 143 ~g~~~~~v~~-~-~~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~ 214 (397)
T 3f9t_A 143 MDLEYIYAPI-K-EDYTIDEKFVKDAVEDYDVD---GIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAFGGLV 214 (397)
T ss_dssp HTCEEEEECB-C-TTSSBCHHHHHHHHHHSCCC---EEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGT
T ss_pred cCceeEEEee-C-CCCcCCHHHHHHHHhhcCCe---EEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccccchh
Confidence 9999999998 3 4577999999999987 554 7888889999999976 6678999999999999999998765
Q ss_pred cCcCCChhH------HHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 236 MNMDADALP------VRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 236 ~~~~~~~~~------~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+....... ...+ .. ...+++.|++|.++ +|.|+||+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~ 261 (397)
T 3f9t_A 215 IPFLDDKYKKKGVNYKFDF-SL-GVDSITIDPHKMGH-CPIPSGGILFKD 261 (397)
T ss_dssp GGGCCGGGCCTTCCCCCSG-GG-TCSEEECCTTTTTC-CCSSCEEEEESS
T ss_pred hhhcccccccccccccccc-cc-cCCeEEEccccccC-CCCCceEEEEeC
Confidence 421110000 0111 12 34577899999775 788999998753
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=180.64 Aligned_cols=206 Identities=11% Similarity=-0.086 Sum_probs=145.5
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCC----CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKE----YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
+...+||+.+.+ -+.+.++..+++..+.+..-...... |.......+|++++++++.. +..++
T Consensus 58 g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--------~~~i~-- 124 (409)
T 3kki_A 58 SPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF--------DECLL-- 124 (409)
T ss_dssp CTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC--------SEEEE--
T ss_pred CCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC--------CeEEE--
Confidence 346788877664 23334455555555555421111112 23334577899999998632 22333
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEec
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQA 196 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~ 196 (280)
+++|++++..+ +.+++.+||.|+++.|+|..+...++..|++++.++. .|++.+++++.++.. ++++++
T Consensus 125 ~~sGt~a~~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~--~~vi~~ 193 (409)
T 3kki_A 125 SQSGWNANVGL--LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRHGP--GIIVVD 193 (409)
T ss_dssp ESCHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHHCS--CEEEEE
T ss_pred ecchHHHHHHH--HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhcCC--eEEEEC
Confidence 56667999988 7788899999999999999999999999999887764 589999999986411 388889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEecccccccccccccceE
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
+|+||||.+++ +++|+++|++||++||+||+|..+.+..... ... ...+. ....|++.||||.|+++ .||+
T Consensus 194 ~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~-~~~-~~~~~~~~~di~~~s~sK~~~~~---gg~v 265 (409)
T 3kki_A 194 SIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGA-GLL-AELGLTREVHFMTASLAKTFAYR---AGAI 265 (409)
T ss_dssp SBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CHH-HHHTCGGGCSEEEEESSSTTCSS---CEEE
T ss_pred CCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCC-cch-hhcCCCCCCCEEEeecchhhCCC---ceEE
Confidence 99999999998 7788999999999999999999865532111 111 22121 12348899999999865 4888
Q ss_pred EEE
Q 023599 276 SVV 278 (280)
Q Consensus 276 v~~ 278 (280)
+..
T Consensus 266 ~~~ 268 (409)
T 3kki_A 266 WCN 268 (409)
T ss_dssp EES
T ss_pred EEC
Confidence 764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-23 Score=186.35 Aligned_cols=171 Identities=14% Similarity=-0.015 Sum_probs=131.5
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
+..|+|+.+. .+ .+++.+.++..+.. .+|.+..|..++++++++++....+ ..++++++ |+||+
T Consensus 13 p~~i~l~~~~----~~--~~~~~v~~a~~~~~------~~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~--~~g~t 76 (359)
T 1svv_A 13 PKPYSFVNDY----SV--GMHPKILDLMARDN------MTQHAGYGQDSHCAKAARLIGELLE--RPDADVHF--ISGGT 76 (359)
T ss_dssp --CEECSCSC----SS--CCCHHHHHHHHHHT------TCCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEE--ESCHH
T ss_pred CeeEEecCCC----cC--CCCHHHHHHHHHHH------hhccccccccHHHHHHHHHHHHHhC--CCCccEEE--eCCch
Confidence 5678998765 23 23444444444433 1366667778888888887644322 23577888 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCChHH--HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC----CCcEEEEe
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNHPN--FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP----SGAIVLLQ 195 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~~v~~ 195 (280)
+++.++ +..++.+||+|++++|+|..+.. .++..|++++.++. + ++.+|++.+++.+.++. .+.+++++
T Consensus 77 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~ 151 (359)
T 1svv_A 77 QTNLIA--CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPC-P--DGKLRVADIESALHENRSEHMVIPKLVYI 151 (359)
T ss_dssp HHHHHH--HHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC-T--TSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred HHHHHH--HHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeC-C--CCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence 999999 77778899999999999988876 47788999999997 3 56899999999997641 12457888
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCc
Q 023599 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGF 234 (280)
Q Consensus 196 ~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~ 234 (280)
++| ||||.+++.+++++|+++|++||+++|+||+|..+
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 189 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLAS 189 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHH
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhh
Confidence 888 79999999999999999999999999999999554
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-23 Score=183.28 Aligned_cols=203 Identities=14% Similarity=0.087 Sum_probs=142.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.++|+|+.+.. . .+.+.+.++..... .. ...|++..+.++||+++++++.. +++++ ++||+
T Consensus 3 ~~~i~~~~~~~----~--~p~~~~~~a~~~~~--~~-~~~y~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt 63 (347)
T 1jg8_A 3 HMMIDLRSDTV----T--KPTEEMRKAMAQAE--VG-DDVYGEDPTINELERLAAETFGK--------EAALF--VPSGT 63 (347)
T ss_dssp --CEECSCGGG----C--CCCHHHHHHHHTCC--CC-CGGGTCCHHHHHHHHHHHHHHTC--------SEEEE--ESCHH
T ss_pred ceEEEeccccC----C--CCCHHHHHHHhcCC--CC-CcccCCChHHHHHHHHHHHHhCC--------ceEEE--ecCcH
Confidence 35789998873 2 34455555544322 11 23587888899999999999732 34455 88888
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCC-hH--HHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEe
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGN-HP--NFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQ 195 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~-~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~ 195 (280)
+++.++ +.+++.+||+|++++|+|.. |. ..+...|++++.+ . + +++.+|++.+++++++. .++.+++++
T Consensus 64 ~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~-~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 138 (347)
T 1jg8_A 64 MGNQVS--IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-P-G-KNGAMDPDDVRKAIRPRNIHFPRTSLIAI 138 (347)
T ss_dssp HHHHHH--HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-C-E-ETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred HHHHHH--HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-c-C-CCCccCHHHHHHHhccccccccCceEEEE
Confidence 998888 77778899999999999854 22 3566789998888 4 2 34568999999998652 123568888
Q ss_pred cCCCCCC-CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc--cCcCCChhHHHHhhhcCCeEEEEeccccccccccccc
Q 023599 196 ASGHNPT-GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV--MNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 196 ~~p~NPT-G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv 272 (280)
++||||| |.+++.+++++|+++|+++|+++|+|++|.... +.. .+. ..+....+ .+ +.|+||.++++ +
T Consensus 139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~-~~~---~~~~~~~d-~~-~~s~sK~l~~~---~ 209 (347)
T 1jg8_A 139 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG-VPV---KEYAGYAD-SV-MFCLSKGLCAP---V 209 (347)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC-CCH---HHHHHTCS-EE-EEESSSTTCCS---S
T ss_pred eccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC-CCh---HHhccccc-EE-EEecccccCCC---c
Confidence 9999999 999999999999999999999999999874321 111 111 22222223 33 34899999743 7
Q ss_pred ceEEE
Q 023599 273 GALSV 277 (280)
Q Consensus 273 G~~v~ 277 (280)
||+++
T Consensus 210 G~~~~ 214 (347)
T 1jg8_A 210 GSVVV 214 (347)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 86544
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=179.25 Aligned_cols=164 Identities=18% Similarity=0.159 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh----cCCCEEEEeCCCCCChHHHHHH---cC
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH----YYQHTVYLSQPTYGNHPNFFAA---AG 158 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~----~~Gd~Vli~~P~y~~~~~~~~~---~G 158 (280)
.+..++|+++++++.. .++++++ |+|+++|+.++ +.++. .+||+|++++|+|..+...+.. .|
T Consensus 43 ~~~~~l~~~la~~~g~------~~~~v~~--~~g~t~a~~~~--~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g 112 (382)
T 4eb5_A 43 EAVQEAREKVAKLVNG------GGGTVVF--TSGATEANNLA--IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG 112 (382)
T ss_dssp HHHHHHHHHHHHHHTC------TTEEEEE--ESSHHHHHHHH--HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCC------CCCeEEE--cCchHHHHHHH--HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCC
Confidence 3567899999998732 2367777 99999999999 66666 7999999999999888666653 69
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
++++.+++ + +++.+|++.+++++.++ .+++++++|+||||.+++ +++|+++|+++|++ |+|++|......
T Consensus 113 ~~~~~v~~-~-~~~~~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~g~~~- 182 (382)
T 4eb5_A 113 FEVEYIPV-G-KYGEVDVSFIDQKLRDD---TILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATASVGQIE- 182 (382)
T ss_dssp CEEEEECB-C-TTSCBCHHHHHHHCCTT---EEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTBTTBC-
T ss_pred cEEEEecc-C-CCCccCHHHHHHHhcCC---CeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchhcCCcc-
Confidence 99999998 3 35678999999998654 348899999999999998 56789999999999 999999832111
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
..+..+ ...+++.|+||.+|.+| +||+++..
T Consensus 183 ----~~~~~~----~~di~~~s~sK~~g~~g--~G~~~~~~ 213 (382)
T 4eb5_A 183 ----VDVEKI----GADMLTISSNDIYGPKG--VGALWIRK 213 (382)
T ss_dssp ----CCHHHH----TCSEEEEETGGGTCCSS--CEEEEEET
T ss_pred ----cCcccc----CCCEEEeehHHhcCCCc--eEEEEEcc
Confidence 111221 24578999999988666 79988764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-23 Score=184.04 Aligned_cols=168 Identities=13% Similarity=0.016 Sum_probs=131.9
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHH----HHHcCCe
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNF----FAAAGLA 160 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~----~~~~G~~ 160 (280)
.+..+||+++++++. ..++++++ |+|+++++.++ +..+ +.+||+|+++.|+|..+... ++..|++
T Consensus 59 ~~~~~l~~~la~~~g------~~~~~v~~--~~g~t~a~~~~--~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~ 128 (390)
T 1elu_A 59 QLIAQLRQALAETFN------VDPNTITI--TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGIT 128 (390)
T ss_dssp HHHHHHHHHHHHHTT------SCGGGEEE--ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHcC------CCHHHEEE--eCChHHHHHHH--HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcE
Confidence 678899999999962 23468887 99999999999 7777 78999999999999987654 4567999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH----hCCceeEEcccCCCccc
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMR----LKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~----~~~~~ii~De~y~~~~~ 236 (280)
++.++...++++.+|++.+++++.++ ..+|++++|+||||.+++ +++|.++|+ ++|+++|+|++|.....
T Consensus 129 ~~~v~~~~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~ 202 (390)
T 1elu_A 129 YRFFPVAATLNQGDAAAVLANHLGPK---TRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL 202 (390)
T ss_dssp EEEECCGGGSSSSCHHHHHHTTCCTT---EEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTB
T ss_pred EEEEcCCCCCCccchHHHHHHhcCCC---ceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCc
Confidence 99999832246788999999988653 348889999999999999 667788888 99999999999974322
Q ss_pred CcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 237 NMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
. ..+ ......++++|+||.+ ..|.|+||+++..
T Consensus 203 ~--------~~~-~~~~~d~~~~s~~K~~-~~~~g~G~~~~~~ 235 (390)
T 1elu_A 203 P--------LDF-SRLEVDYYAFTGHKWF-AGPAGVGGLYIHG 235 (390)
T ss_dssp C--------CCT-TTSCCSEEEEESSSTT-CCCTTCEEEEECT
T ss_pred C--------CCh-hhcCCCEEEccccccc-cCCCceEEEEECH
Confidence 1 011 1123458899999944 3678899998753
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=183.49 Aligned_cols=192 Identities=17% Similarity=0.094 Sum_probs=145.4
Q ss_pred EeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC-CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHH
Q 023599 46 NLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP-ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSL 124 (280)
Q Consensus 46 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al 124 (280)
+|+.|++ ..+.+...+++..+.+. .+ .|.+ ..+..+||+++++++.. +++++ |+||++++
T Consensus 20 ~l~~~~p----~~~~p~~~~~a~~~~~~--~~---~y~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al 80 (424)
T 2po3_A 20 PLLVGRP----NRIDRARLYERLDRALD--SQ---WLSNGGPLVREFEERVAGLAGV--------RHAVA--TCNATAGL 80 (424)
T ss_dssp CEETTCC----CCCCHHHHHHHHHHHHH--HT---CCSSSCHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHH
T ss_pred cccccCC----CCCChHHHHHHHHHHHh--cC---CcccCCHHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHH
Confidence 6888885 22344444444444443 22 3766 67899999999999732 46777 99999999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCC
Q 023599 125 RIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGI 204 (280)
Q Consensus 125 ~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~ 204 (280)
.++ +.++ .+||+|++++|+|..+...++..|++++.+++ +++++.+|++.+++++.+++ .+|+++ ||||.
T Consensus 81 ~~~--l~~l-~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~~~---~~v~~~---~~tG~ 150 (424)
T 2po3_A 81 QLL--AHAA-GLTGEVIMPSMTFAATPHALRWIGLTPVFADI-DPDTGNLDPDQVAAAVTPRT---SAVVGV---HLWGR 150 (424)
T ss_dssp HHH--HHHH-TCCSEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTSSBCHHHHGGGCCTTE---EEEEEE---CGGGC
T ss_pred HHH--HHHc-CCCCEEEECCCccHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHhhCcCC---cEEEEE---CCCCC
Confidence 999 5554 47999999999999999999999999999998 45567899999999886543 366653 58998
Q ss_pred CCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 205 DPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 205 ~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.. ++++|+++|+++|++||+|++|. .+.++. .. +.... + +++.||||..+++|+|+||+++.
T Consensus 151 ~~---~l~~i~~la~~~~~~li~Dea~~~g~~~~~-~~------~~~~~-d-i~~~S~sk~K~l~~~~~G~~v~~ 213 (424)
T 2po3_A 151 PC---AADQLRKVADEHGLRLYFDAAHALGCAVDG-RP------AGSLG-D-AEVFSFHATKAVNAFEGGAVVTD 213 (424)
T ss_dssp CC---CHHHHHHHHHHTTCEEEEECTTCTTCEETT-EE------TTSSS-S-EEEEECCTTSSSCCSSCEEEEES
T ss_pred cC---CHHHHHHHHHHcCCEEEEECccccCCeECC-ee------ccccc-C-EEEEeCCCCCCccCCCCeEEEeC
Confidence 64 57788999999999999999999 466542 11 11112 3 88999997777788999999875
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-23 Score=185.78 Aligned_cols=163 Identities=13% Similarity=0.095 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc----CCCEEEEeCCCCCChHHHHH---HcCC
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY----YQHTVYLSQPTYGNHPNFFA---AAGL 159 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~----~Gd~Vli~~P~y~~~~~~~~---~~G~ 159 (280)
+..++++.+++++.. .++++++ |+||++|+.++ +.++.. +||+|+++.|+|..+...+. ..|+
T Consensus 69 ~~~~l~~~la~~~~~------~~~~v~~--~~ggt~a~~~a--~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~ 138 (423)
T 3lvm_A 69 AVDIARNQIADLVGA------DPREIVF--TSGATESDNLA--IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF 138 (423)
T ss_dssp HHHHHHHHHHHHHTC------CGGGEEE--ESSHHHHHHHH--HHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC------CCCeEEE--eCChHHHHHHH--HHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCC
Confidence 346788999988632 3478888 99999999999 665553 79999999999998877764 4599
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.++. + +++.+|++.+++++.+++ .++++++|+||||.+++ +++|+++|+++|++||+||+|.......
T Consensus 139 ~~~~v~~-~-~~~~~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~- 209 (423)
T 3lvm_A 139 EVTYLAP-Q-RNGIIDLKELEAAMRDDT---ILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLPI- 209 (423)
T ss_dssp EEEEECC-C-TTSCCCHHHHHHHCCTTE---EEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSCC-
T ss_pred EEEEecc-C-CCCccCHHHHHHhcCCCc---EEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCCc-
Confidence 9999998 3 367789999999987543 48999999999999998 5668899999999999999987643311
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.. ......+++.|+||.+|.+| +||+++.
T Consensus 210 -------~~-~~~~~di~~~s~sK~~g~~g--~G~~~~~ 238 (423)
T 3lvm_A 210 -------DL-SQLKVDLMSFSGHKIYGPKG--IGALYVR 238 (423)
T ss_dssp -------CT-TTSCCSEEEEESTTTTSCSS--CEEEEEC
T ss_pred -------Ch-hhcCCCEEEechHHhcCCCC--eEEEEEe
Confidence 11 11124588999999988766 9999875
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=181.00 Aligned_cols=209 Identities=12% Similarity=0.045 Sum_probs=143.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCC-C-CCCCC--CCCCCHHHHHHHHHHHhCCCCccccCCCeEEe
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS-A-DKEYL--PITGLPEFNKLSAKLIFGADSPAIKENRVSTV 115 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~y~--~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v 115 (280)
.+...|||+.|.+ -++..++...++..+.+..-.. . ...|. ...+..+||+++++++. . +++++
T Consensus 43 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-~------~~~i~-- 110 (401)
T 1fc4_A 43 DGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG-M------EDAIL-- 110 (401)
T ss_dssp TSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT-C------SEEEE--
T ss_pred CCccEEEeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhC-C------CcEEE--
Confidence 3467899998864 2211233333433333331011 0 01222 24567899999999972 1 14444
Q ss_pred ecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC---CcEE
Q 023599 116 QCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS---GAIV 192 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~---~~~~ 192 (280)
+++|++++..+ +..++.+||+|+++.|+|..+...++..|++++.++. .|++.+++.+.+... +.++
T Consensus 111 -~~sGs~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 111 -YSSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp -ESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEE
T ss_pred -eCChHHHHHHH--HHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceE
Confidence 45557788888 6777889999999999998888888889999888774 478999988865211 3458
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecccccc-ccccc
Q 023599 193 LLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSYSKTM-GLYGE 270 (280)
Q Consensus 193 v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~ 270 (280)
|++++||||||.+++ +++|.++|+++|+++|+||+|. ++.+.......+...+ .....++++||||.+ +.+|
T Consensus 181 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~--~~~~di~~~s~sK~~~~~~g- 254 (401)
T 1fc4_A 181 IATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV--MGRVDIITGTLGKALGGASG- 254 (401)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC--TTCCSEEEEESSSTTCSSSC-
T ss_pred EEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC--CcCCcEEEecchhhccCCCC-
Confidence 888999999999998 7788999999999999999995 7764212222211122 123568999999999 6554
Q ss_pred ccceEEEE
Q 023599 271 RVGALSVV 278 (280)
Q Consensus 271 RvG~~v~~ 278 (280)
||+++.
T Consensus 255 --G~~~~~ 260 (401)
T 1fc4_A 255 --GYTAAR 260 (401)
T ss_dssp --EEEEEC
T ss_pred --EEEEcC
Confidence 998874
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=180.88 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh--------cCCCEEEEeCCCCCCh---------
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH--------YYQHTVYLSQPTYGNH--------- 150 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~--------~~Gd~Vli~~P~y~~~--------- 150 (280)
..++|+++++++.. .++++++ |+|+++++.++ +..++ .+||+|+++.|+|..+
T Consensus 63 ~~~l~~~la~~~g~------~~~~v~~--~~g~t~a~~~~--~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~ 132 (432)
T 3a9z_A 63 INTARASLAKMIGG------KPQDIIF--TSGGTESNNLV--IHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVE 132 (432)
T ss_dssp HHHHHHHHHHHHTC------CGGGEEE--ESCHHHHHHHH--HHHHHHHHHHHHHHC------------CCCEEEEETTC
T ss_pred HHHHHHHHHHHcCC------CcCeEEE--eCChHHHHHHH--HHHHHhhhhhccccCCccccccccccccCCeEEEecCc
Confidence 36899999999732 3478888 99999999999 55554 5899999999999875
Q ss_pred --------HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCC
Q 023599 151 --------PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKR 222 (280)
Q Consensus 151 --------~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~ 222 (280)
....+..|++++.+++ +++++.+|++.|++++.++ ..++++++|+||||.+++.+ +|.++|++++
T Consensus 133 h~s~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~ 205 (432)
T 3a9z_A 133 HDSIRLPLEHLVEDQVAEVTFVPV-SKVNGQVEVEDILAAVRPT---TCLVTIMLANNETGVIMPIS---EISRRIKALN 205 (432)
T ss_dssp CHHHHHHHHHHHHTTSCEEEEECC-CTTTSSCCHHHHHHTCCTT---EEEEECCSBCTTTCBBCCHH---HHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCcEEEEEec-CcccCCcCHHHHHHhccCC---ceEEEEECcccCcccccCHH---HHHHHHHhcC
Confidence 3334457999999998 4435678999999988654 34889999999999999965 5688889988
Q ss_pred ----------ceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 223 ----------LLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 223 ----------~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+++|+|++|...... ..+. ..+.++ ++.|+||.+| .|+||+++.
T Consensus 206 ~~~~~~~~~~~~livDea~~~~~~~-----~~~~---~~~~d~-~~~s~~K~~g---~~~G~~~~~ 259 (432)
T 3a9z_A 206 QIRAASGLPRVLVHTDAAQALGKRR-----VDVE---DLGVDF-LTIVGHKFYG---PRIGALYVR 259 (432)
T ss_dssp HHHHHHTCCCCEEEEECTTTTTTSC-----CCHH---HHCCSE-EEEEGGGTTC---CSCEEEEET
T ss_pred cccccccCCceEEEEEchhhhCCcc-----cChh---hcCCCE-EEEehhHhcC---CcceEEEEc
Confidence 999999999765321 1112 223344 4899999764 679999875
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=190.22 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=126.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----H
Q 023599 79 DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----F 154 (280)
Q Consensus 79 ~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~ 154 (280)
.+.|. ..|.+ +++++++++....+. +++++ ++||++|+.++ + .++.+||+|++++|.|..+... +
T Consensus 124 ~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~--~~sGt~al~~~--l-~~~~~Gd~Vi~~~~~y~~~~~~~~~~~ 192 (464)
T 1ibj_A 124 PYDYT-RSGNP-TRDALESLLAKLDKA----DRAFC--FTSGMAALSAV--T-HLIKNGEEIVAGDDVYGGSDRLLSQVV 192 (464)
T ss_dssp SCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEE--ESSHHHHHHHH--H-TTSCTTCEEEEESSCCHHHHHHHHHTS
T ss_pred Ccccc-CCCCH-HHHHHHHHHHHHhCC----CeEEE--ECCHHHHHHHH--H-HHhCCCCEEEEECCCchhHHHHHHHHH
Confidence 34565 45666 666666665443222 45555 78889999877 4 3678999999999999988765 3
Q ss_pred HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCc
Q 023599 155 AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGF 234 (280)
Q Consensus 155 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~ 234 (280)
+..|++++.++. .|++.+++++.++ .++|++++|+||||.+++ +++|+++|++||+++|+||+|...
T Consensus 193 ~~~G~~v~~v~~-------~d~~~l~~~i~~~---tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g 259 (464)
T 1ibj_A 193 PRSGVVVKRVNT-------TKLDEVAAAIGPQ---TKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSP 259 (464)
T ss_dssp GGGTCEEEEECT-------TSHHHHHHHCCSS---EEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCT
T ss_pred HHcCCEEEEeCC-------CCHHHHHHHhccC---ceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccc
Confidence 567999998886 2799999998654 348899999999999995 778899999999999999999764
Q ss_pred ccCcCCChhHHHHhhhcCCeEEEEeccccccccc-ccccceEEEE
Q 023599 235 VMNMDADALPVRMFVADGGECLVAQSYSKTMGLY-GERVGALSVV 278 (280)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G~RvG~~v~~ 278 (280)
... .. + + ....+++.|+||.|+.+ |+|+||+++.
T Consensus 260 ~~~---~~-----~-~-~~~div~~S~sK~~~g~~Gl~~G~l~~~ 294 (464)
T 1ibj_A 260 VLS---RP-----L-E-LGADIVMHSATKFIAGHSDVMAGVLAVK 294 (464)
T ss_dssp TTC---CG-----G-G-TTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred ccC---Ch-----h-h-cCCEEEEECCcccccCCCCCcEEEEEEC
Confidence 221 00 1 1 24678999999999754 9999999875
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-22 Score=176.81 Aligned_cols=169 Identities=9% Similarity=-0.020 Sum_probs=127.4
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh--hcCCCEEEEeCCCCCChHHHHHHcCC
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK--HYYQHTVYLSQPTYGNHPNFFAAAGL 159 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~--~~~Gd~Vli~~P~y~~~~~~~~~~G~ 159 (280)
|....+.+++|+++++++.. ++++++ ++|++ ++..+ +..+ ..+||+|+++.|+|..+...++..|+
T Consensus 87 ~~~~~~~~~l~~~la~~~~~-------~~~i~~--~sG~~-a~~~~--~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~ 154 (401)
T 2bwn_A 87 SGTTAYHRRLEAEIAGLHQK-------EAALVF--SSAYN-ANDAT--LSTLRVLFPGLIIYSDSLNHASMIEGIKRNAG 154 (401)
T ss_dssp BCCBHHHHHHHHHHHHHTTC-------SEEEEE--SCHHH-HHHHH--HHHHHHHSTTCEEEEETTCCHHHHHHHHHSCC
T ss_pred cCChHHHHHHHHHHHHHhCC-------CcEEEE--CCcHH-HHHHH--HHHHhcCCCCCEEEECchhhHHHHHHHHHcCC
Confidence 45556789999999999731 366665 77765 66665 3332 35899999999999999988999999
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCC-CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAP-SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
+++.++. + |++.+++.+.... .+.++|++++|+||||.+++ +++|+++|+++|+++|+||+|....+..
T Consensus 155 ~~~~v~~-~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~ 224 (401)
T 2bwn_A 155 PKRIFRH-N------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGP 224 (401)
T ss_dssp CEEEECT-T------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSST
T ss_pred eEEEEcC-C------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCC
Confidence 9999886 2 7888998887432 23458899999999999998 6788999999999999999999655532
Q ss_pred C-CChhHHHHhhhc-CCeEEEEecccccccccccccceEEEE
Q 023599 239 D-ADALPVRMFVAD-GGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~-~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. ... ....+. ....++++||||.|+++| ||++..
T Consensus 225 ~g~~~---~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~ 260 (401)
T 2bwn_A 225 RGAGV---AERDGLMHRIDIFNGTLAKAYGVFG---GYIAAS 260 (401)
T ss_dssp TSCCH---HHHHTCGGGCSEEEEESSSTTCSCC---EEEEEC
T ss_pred CCcee---eeccCccccCcEEEeechhhccCCC---CEEecC
Confidence 1 111 111121 124688999999999888 998764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-22 Score=178.22 Aligned_cols=202 Identities=11% Similarity=-0.054 Sum_probs=144.7
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCC-CCCCC----CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSA-DKEYL----PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~----~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
+.+.|..+.. . +.++..+++..+.+...... ...|. ...+..++|+++++++.. .+++|++ |
T Consensus 26 ~~~~ld~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~--~ 92 (406)
T 3cai_A 26 GWVHFDAPAG----M-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNA------DPGGVVL--G 92 (406)
T ss_dssp SCEECBGGGC----C-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE--E
T ss_pred CeEEEeCCCc----C-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCC------CCCeEEE--e
Confidence 4788888773 2 23444444444444311100 11232 234678899999999732 2478888 9
Q ss_pred ccchhHHHHHHHHHHh---hcCCCEEEEeCCCCCChHHHHHH----cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCc
Q 023599 118 LSGSGSLRIGADFLAK---HYYQHTVYLSQPTYGNHPNFFAA----AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGA 190 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~---~~~Gd~Vli~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~ 190 (280)
+|+++++.++ +.++ +.+||+|+++.|+|..+...+.. .|++++.+++ +++++.+|++.+++++.++ .
T Consensus 93 ~g~t~al~~~--~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~~~l~~~l~~~---~ 166 (406)
T 3cai_A 93 ADRAVLLSLL--AEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEV-DIETGELPTWQWESLISKS---T 166 (406)
T ss_dssp SCHHHHHHHH--HHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECC-CTTTCCCCGGGHHHHCCTT---E
T ss_pred CChHHHHHHH--HHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEec-CcccCCcCHHHHHHHhCCC---c
Confidence 9999999998 6555 68999999999999876555543 6999999998 4456678999999998654 3
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
++|++++|+||||.+++ +++|.++|+++|+++|+|++|....... + +.. . ...+++.|+||.+| ++
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~--~---~~~---~-~~d~~~~s~~K~~g-~~- 232 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYRLL--D---IRE---T-DADVVTVNAHAWGG-PP- 232 (406)
T ss_dssp EEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTCCC--C---HHH---H-CCSEEEEEGGGGTS-CS-
T ss_pred eEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCCCC--C---chh---c-CCCEEEeehhhhcC-CC-
Confidence 48888999999999998 5678899999999999999997532211 1 122 2 24577999999876 54
Q ss_pred ccc-eEEEE
Q 023599 271 RVG-ALSVV 278 (280)
Q Consensus 271 RvG-~~v~~ 278 (280)
+| |+++.
T Consensus 233 -~G~~~~~~ 240 (406)
T 3cai_A 233 -IGAMVFRD 240 (406)
T ss_dssp -CEEEEESC
T ss_pred -cCeEEEEe
Confidence 99 88764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=171.53 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh----cCCCEEEEeCCCCCChHHHHHH---cCCee
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH----YYQHTVYLSQPTYGNHPNFFAA---AGLAM 161 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~----~~Gd~Vli~~P~y~~~~~~~~~---~G~~~ 161 (280)
.++++++++++.. .++++++ |+|+++++.++ +.++. .+||+|+++.|.|+.+...+.. .|+++
T Consensus 46 ~~~~~~la~~~~~------~~~~i~~--~~g~~~a~~~~--~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4hvk_A 46 QEAREKVAKLVNG------GGGTVVF--TSGATEANNLA--IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHTTC------TTEEEEE--ESSHHHHHHHH--HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCC------CcCeEEE--ECCchHHHHHH--HHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEE
Confidence 4788888887532 2467887 99999999999 66666 8999999999999988765554 69999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.++. + +++.+|++.+++++.+++ +++++++|+||||.+++ +++|+++|++||+ +|+|++|....... +
T Consensus 116 ~~v~~-~-~~~~~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~~~--~ 184 (382)
T 4hvk_A 116 EYIPV-G-KYGEVDVSFIDQKLRDDT---ILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASVGQIEV--D 184 (382)
T ss_dssp EEECB-C-TTSCBCHHHHHHHCCTTE---EEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTBTTBCC--C
T ss_pred EEecc-C-CCCCcCHHHHHHHhccCc---eEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCCCC--C
Confidence 99998 3 456799999999987543 49999999999999988 5577899999999 99999886433211 1
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
... . ...+++.|+||.+|.+| +|++++..
T Consensus 185 ---~~~---~-~~d~~~~s~~K~~g~~g--~g~~~~~~ 213 (382)
T 4hvk_A 185 ---VEK---I-GADMLTISSNDIYGPKG--VGALWIRK 213 (382)
T ss_dssp ---HHH---H-TCSEEEEESGGGTSCTT--CEEEEEET
T ss_pred ---chh---c-CCCEEEEeHHHhcCCCc--eEEEEEcC
Confidence 111 1 24578999999887655 77777653
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=179.42 Aligned_cols=194 Identities=18% Similarity=0.081 Sum_probs=146.2
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.+.++|+.|.+ . .+ +.+.+++.+... . ..|.+..+..+||+++++++.. +++++ ++||+
T Consensus 30 ~~~id~~~~~~---~---~~-~~v~~a~~~~~~-~---~~y~~~~~~~~l~~~la~~~~~--------~~~v~--~~~Gt 88 (399)
T 2oga_A 30 VPFLDLKAAYE---E---LR-AETDAAIARVLD-S---GRYLLGPELEGFEAEFAAYCET--------DHAVG--VNSGM 88 (399)
T ss_dssp BCSCCHHHHHH---H---TH-HHHHHHHHHHHH-H---TCCSSSHHHHHHHHHHHHHTTS--------SEEEE--ESCHH
T ss_pred CcccccCcCCC---C---CC-HHHHHHHHHHHh-c---CCCCCchhHHHHHHHHHHHHCC--------CeEEE--ecCHH
Confidence 46789999885 1 22 444444443331 1 2466667889999999999632 24444 78889
Q ss_pred hHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+|+.++ +..+ +.+||+|+++.|+|..+...++..|++++.+++ +++++.+|++.+++++.+++ .+|+ |+|
T Consensus 89 ~a~~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~~~~---~~v~---~~n 159 (399)
T 2oga_A 89 DALQLA--LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEP-HEDHPTLDPLLVEKAITPRT---RALL---PVH 159 (399)
T ss_dssp HHHHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CSSSSSBCHHHHHHHCCTTE---EEEC---CBC
T ss_pred HHHHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEec-CCCCCCcCHHHHHHhcCCCC---eEEE---EeC
Confidence 999999 7777 789999999999999999999999999999998 45467899999999987542 3555 579
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc-cCcCCChhHHHHhhhcCCeEEEEecc--cccccccccccceEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV-MNMDADALPVRMFVADGGECLVAQSY--SKTMGLYGERVGALSV 277 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RvG~~v~ 277 (280)
|||.+.+ +++|.++|+++|+++|+|++|..+. ++. .. +..+ . -+++.|+ ||.++.+| |.||+++
T Consensus 160 ~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~---~~~~----~-di~~~S~~~sK~~~~~G-~~g~~~~ 226 (399)
T 2oga_A 160 LYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG-RR---IGAG----S-SVAAFSFYPGKNLGCFG-DGGAVVT 226 (399)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT-EE---TTCT----T-CEEEEECCTTSSSCCSS-CCEEEEE
T ss_pred CcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC-ee---cccc----c-CEEEEeCCCCccCCcCC-ceEEEEe
Confidence 9999876 6778899999999999999998764 331 11 0111 1 3778888 89999779 9999887
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
.
T Consensus 227 ~ 227 (399)
T 2oga_A 227 G 227 (399)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=175.58 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=124.9
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~ 162 (280)
....|++.++++.. .+++++ ++||++|+.++ +.+++.+||+|++++|+|..+...++ ..|++++
T Consensus 82 ~~~~l~~~la~~~g--------~~~~~~--~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~ 149 (414)
T 3ndn_A 82 TVSVFEERLRLIEG--------APAAFA--TASGMAAVFTS--LGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTV 149 (414)
T ss_dssp HHHHHHHHHHHHHT--------CSEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHC--------CCcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEE
Confidence 34567777777642 145565 89999999998 78888999999999999998877764 4899999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. + |++.+++++.++++ +|++++|+||||.+.+ +++|+++|+++|+++|+|++|....... +
T Consensus 150 ~v~~-~------d~~~l~~ai~~~t~---~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~--~- 213 (414)
T 3ndn_A 150 FVDG-D------DLSQWERALSVPTQ---AVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ--G- 213 (414)
T ss_dssp EECT-T------CHHHHHHHTSSCCS---EEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC--C-
T ss_pred EeCC-C------CHHHHHHhcCCCCe---EEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC--c-
Confidence 9987 1 79999999987655 8888999999999976 6678999999999999999997443211 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
...+ ..+++.|+||.++.+| +|+||++..
T Consensus 214 ------~~~g-~div~~S~sK~l~~~G~~~~G~vv~~ 243 (414)
T 3ndn_A 214 ------FPLG-VDVVVYSGTKHIDGQGRVLGGAILGD 243 (414)
T ss_dssp ------GGGT-CSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred ------hhcC-CCeEeccCCccccCCCCceEEEEEEC
Confidence 1222 3478999999999889 899998864
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-22 Score=178.86 Aligned_cols=166 Identities=11% Similarity=-0.045 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeeeE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~ 163 (280)
.+..++|+++++++.. +++++++ |+|+++++.++ +.+++.+||+|++++|+|..+ ...++..|++++.
T Consensus 42 ~~~~~l~~~la~~~g~------~~~~v~~--t~g~t~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~ 111 (392)
T 2z9v_A 42 LLYEKVVDKAQKAMRL------SNKPVIL--HGEPVLGLEAA--AASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLE 111 (392)
T ss_dssp HHHHHHHHHHHHHTTC------SSCCEEE--SSCTHHHHHHH--HHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHHHHhCC------CCCEEEE--eCCchHHHHHH--HHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEE
Confidence 3567899999999632 2478887 99999999999 777788999999999999765 3445568999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
+++ ++ ++.+|++.+++++++.+ +.+++++++|+||||.+++ +++|.++|+++|+++|+|++|....... +
T Consensus 112 v~~-~~-~~~~d~~~l~~~l~~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~--~-- 181 (392)
T 2z9v_A 112 IEV-PY-NEAIDPQAVADMLKAHP-EITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSFGGMKT--H-- 181 (392)
T ss_dssp EEC-CT-TSCCCHHHHHHHHHHCT-TCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBSC--C--
T ss_pred eeC-CC-CCCCCHHHHHHHHhcCC-CCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEcccccCCccc--c--
Confidence 998 33 45689999999996421 2237888999999999998 5688999999999999999997432210 1
Q ss_pred HHHHhhhcCCeEEEEecccccc-cccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTM-GLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~-~~~G~RvG~~v~~ 278 (280)
+... ...+++.|+||.+ +.+|+ ||+++.
T Consensus 182 ----~~~~-~~d~~~~s~sK~~~~~~g~--G~l~~~ 210 (392)
T 2z9v_A 182 ----PEDC-KADIYVTGPNKCLGAPPGL--TMMGVS 210 (392)
T ss_dssp ----GGGG-TCSEEEECSSSTTCCCSCC--EEEEEC
T ss_pred ----cccc-cceEEEecCcccccCCCce--eEEEEC
Confidence 1111 2457899999965 44554 999875
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=173.12 Aligned_cols=208 Identities=10% Similarity=0.061 Sum_probs=137.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.+.+...-| ...+.+.++..+..........+++..-..++++.+++++. .+++++ |+|
T Consensus 34 ~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--------~~~v~~--~~~ 101 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQG--HRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--------KEMVLP--MNT 101 (392)
T ss_dssp TCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--------CSEEEE--ESS
T ss_pred CCCEEEEcCCChhhhccC--CCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--------CCEEEE--eCc
Confidence 345789998885311112 23344444444333111111112334456788888888852 378887 999
Q ss_pred chhHHHHHHHHHHhhcC----------CCEEEEeCCCCCChHHHHHHcCCe-------------eeEEEeecCCCCCcCH
Q 023599 120 GSGSLRIGADFLAKHYY----------QHTVYLSQPTYGNHPNFFAAAGLA-------------MKTYHYYDPKTNGLDF 176 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~----------Gd~Vli~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~d~ 176 (280)
|++|+.++ +.....+ ||+|++..|+|..+...+...+.. +..++. .|+
T Consensus 102 gt~a~~~a--l~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~ 172 (392)
T 3ruy_A 102 GAEAVETA--IKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDL 172 (392)
T ss_dssp HHHHHHHH--HHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCH
T ss_pred HHHHHHHH--HHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccH
Confidence 99999999 4444433 689999999997765555444322 222222 289
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHH-HHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQ-WEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~-l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 255 (280)
+.++++++++ .++|++++|+||||.+++.++ +++|+++|++||+++|+||+|.+|.+..... + ....+...++
T Consensus 173 ~~l~~~l~~~---~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~--~-~~~~~~~~d~ 246 (392)
T 3ruy_A 173 EALKAAITPN---TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF--A-CDWDNVTPDM 246 (392)
T ss_dssp HHHHHHCCTT---EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS--G-GGGGTCCCSE
T ss_pred HHHHHHhccC---eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch--h-hhccCCCCCE
Confidence 9999998743 458899999999999997666 9999999999999999999998886642211 1 1122223344
Q ss_pred EEEecccccccccc-cccceEEEE
Q 023599 256 LVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 256 i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
+ +|||.++ +| +|+||+++.
T Consensus 247 ~---~~SK~l~-gG~~~~G~~~~~ 266 (392)
T 3ruy_A 247 Y---ILGKALG-GGVFPISCAAAN 266 (392)
T ss_dssp E---EECGGGG-TTTSCCEEEEEC
T ss_pred E---EEchhhh-CChhhhEEEEEC
Confidence 4 7799876 46 999999875
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=178.32 Aligned_cols=163 Identities=10% Similarity=0.066 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHhCCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH--HHHHHcCCeeeEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP--NFFAAAGLAMKTY 164 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~--~~~~~~G~~~~~v 164 (280)
..++|+++++++... ++ ++++ |+||++++.++ +.+++.+||+|++++|+|..+. ..++..|++++.+
T Consensus 53 ~~~l~~~la~~~~~~------~~~~v~~--~~g~t~al~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 53 MDEVKDGLRYIFQTE------NRATMCV--SGSAHAGMEAM--LSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp HHHHHHHHHHHHTCC------CSCEEEE--SSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCCC------CCcEEEE--CCcHHHHHHHH--HHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 788999999997432 24 6777 99999999999 7777889999999999999884 4677889999999
Q ss_pred EeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 165 HYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
+. + .++.+|++.+++++.+ +++ +|++++|+||||.+++ +++|+++|+++|+++|+||+|......
T Consensus 123 ~~-~-~~~~~d~~~l~~~l~~~~~~---~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~~g~~~------ 188 (396)
T 2ch1_A 123 EG-P-PDRPFSLETLARAIELHQPK---CLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASLCGVP------ 188 (396)
T ss_dssp EC-C-TTSCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBTTBC------
T ss_pred cC-C-CCCCCCHHHHHHHHHhCCCC---EEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEccccccCCc------
Confidence 98 3 3567999999999986 554 7888999999999998 677899999999999999999832111
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+...+.. +++.|++|.++ .+.++||+++.
T Consensus 189 --~~~~~~~~d-~~~~s~~K~~~-~~~g~g~~~~~ 219 (396)
T 2ch1_A 189 --FYMDKWEID-AVYTGAQKVLG-APPGITPISIS 219 (396)
T ss_dssp --CCTTTTTCC-EEECCCC-CCC-CCSSCEEEEEC
T ss_pred --cchhhcCcC-EEEEcCCcccc-CCCCeEEEEEC
Confidence 011112223 45689999875 44566988774
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=173.75 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=138.3
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+...+||+.|.+.+.-++ .++...++..+.+.. .......++.....++++.+++++. ..++++++ |+||
T Consensus 44 g~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~v~~--~~gg 113 (395)
T 1vef_A 44 GNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAET-LMAMPQTLPTPMRGEFYRTLTAILP------PELNRVFP--VNSG 113 (395)
T ss_dssp SCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHH-CCCCCTTSCCHHHHHHHHHHHHTSC------TTEEEEEE--ESSH
T ss_pred CCEEEEccCccccccCCC-CCHHHHHHHHHHHHh-CCCCccccCCHHHHHHHHHHHHhcC------CCcCEEEE--cCcH
Confidence 456789988863111222 333333443333331 1111111244456778888888742 13477887 9999
Q ss_pred hhHHHHHHHHHHhh--cCCCEEEEeCCCCCC-hHHHHHHcCCeeeE---EEeecCCC---CCcCHHHHHHHHhcCCCCcE
Q 023599 121 SGSLRIGADFLAKH--YYQHTVYLSQPTYGN-HPNFFAAAGLAMKT---YHYYDPKT---NGLDFQGMLQDLGAAPSGAI 191 (280)
Q Consensus 121 ~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~-~~~~~~~~G~~~~~---v~~~~~~~---~~~d~~~l~~~~~~~~~~~~ 191 (280)
++|+.++ +..+. .+||+|++++|+|.. +...+...|.+.+. +|+ ..+. ...|++.+++++.++ .+
T Consensus 114 ~~a~~~a--l~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~-~~~~~~~~~~d~~~l~~~i~~~---~~ 187 (395)
T 1vef_A 114 TEANEAA--LKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL-VEPVEFIPYNDVEALKRAVDEE---TA 187 (395)
T ss_dssp HHHHHHH--HHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC-SSCEEEECTTCHHHHHHHCCTT---EE
T ss_pred HHHHHHH--HHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCC-CCCeeEeCCCcHHHHHHHhccC---EE
Confidence 9999999 54432 578999999999965 44566666765221 111 0000 014899999998643 34
Q ss_pred EEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 192 VLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
+|+++.++||||.++ +.+++++|+++|++||+++|+||+|.++..... . .++ ...+...+++ ||||.++. |+
T Consensus 188 ~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~-~-~~~-~~~~~~~d~~---s~sK~~~~-g~ 260 (395)
T 1vef_A 188 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-R-FAF-EHFGIVPDIL---TLAKALGG-GV 260 (395)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-S-STH-HHHTCCCSEE---EECGGGGT-TS
T ss_pred EEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc-h-hHh-hhcCCCCCEE---EEcccccC-CC
Confidence 666666688999865 688899999999999999999999997654321 1 111 2223333444 88999995 99
Q ss_pred ccceEEEEc
Q 023599 271 RVGALSVVR 279 (280)
Q Consensus 271 RvG~~v~~~ 279 (280)
|+||+++..
T Consensus 261 ~~G~~~~~~ 269 (395)
T 1vef_A 261 PLGVAVMRE 269 (395)
T ss_dssp SCEEEEEEH
T ss_pred ceEEEEehH
Confidence 999999763
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=171.57 Aligned_cols=217 Identities=10% Similarity=0.005 Sum_probs=135.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCC----CCCCCHHHHHHHHHHHhCCCCccccCCCeEEe
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYL----PITGLPEFNKLSAKLIFGADSPAIKENRVSTV 115 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~----~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v 115 (280)
.+...+||+.|.+.+.-++..++..++++.+.+. .. . .|. +.....++++.+++++ +... +++|++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~--~~-~-~~~~~~~~~~~~~~l~~~la~~~----~~~~-~~~v~~- 109 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQ--KL-A-HAAANDFYNIPQLELAKKLVTYS----PGNF-QKKVFF- 109 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHT--TS-C-CCSCSCSCCHHHHHHHHHHHHHS----SCSS-CEEEEE-
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHh--hC-c-cccccccCCHHHHHHHHHHHHhC----CCCc-CCEEEE-
Confidence 3456889988874222222214445555544443 22 1 122 2222345666666653 1111 478888
Q ss_pred ecccchhHHHHHHHHHHhhc-CCCEEEEeCCCCCChHHHHH-HcC-------------CeeeEEEeecCCCC----C---
Q 023599 116 QCLSGSGSLRIGADFLAKHY-YQHTVYLSQPTYGNHPNFFA-AAG-------------LAMKTYHYYDPKTN----G--- 173 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~~~-~Gd~Vli~~P~y~~~~~~~~-~~G-------------~~~~~v~~~~~~~~----~--- 173 (280)
|+||++++.++ +..... +||+|++.+|+|.++..... ..| ..++.++. + +++ +
T Consensus 110 -~~gg~ea~~~a--i~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~~~~g~~~ 184 (419)
T 2eo5_A 110 -SNSGTEAIEAS--IKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPY-P-NPYRNPWHING 184 (419)
T ss_dssp -ESSHHHHHHHH--HHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECC-C-CSSSCTTCCCT
T ss_pred -eCchHHHHHHH--HHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECC-C-ccccccccccc
Confidence 99999999999 544333 48999999999976544322 221 24667776 2 222 2
Q ss_pred ---------cCHHHHH-HHHhcCC--CCcEEEEecCCC-CCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 174 ---------LDFQGML-QDLGAAP--SGAIVLLQASGH-NPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 174 ---------~d~~~l~-~~~~~~~--~~~~~v~~~~p~-NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+|++.|+ +++.+.. .+.++++ ++|+ ||||. +.+.+++++|.++|++||+++|+||+|.+|.....
T Consensus 185 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~ 263 (419)
T 2eo5_A 185 YENPSELVNRVIEFIEDYIFVNLVPPEEVAGIF-FEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK 263 (419)
T ss_dssp TTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred cccchhhHHHHHHHHHHHHHhhccCCCCEEEEE-EeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc
Confidence 3688998 8886421 1223444 4565 57896 67889999999999999999999999998865421
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEEc
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVVR 279 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~~ 279 (280)
... ....+...+++ ||||.|+ .| +|+||+++..
T Consensus 264 --~~~-~~~~~~~~d~~---t~sK~~~-~G~~riG~~~~~~ 297 (419)
T 2eo5_A 264 --LFA-IENFNTVPDVI---TLAKALG-GGIMPIGATIFRK 297 (419)
T ss_dssp --SSG-GGGGTCCCSEE---EECGGGG-TTTSCCEEEEEEG
T ss_pred --hhh-HHhcCCCCCEE---Eeccccc-CCccceEEEEEch
Confidence 111 11223334544 8999999 59 9999998764
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=177.70 Aligned_cols=200 Identities=10% Similarity=0.079 Sum_probs=138.4
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeeccee-ecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVY-RTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
....+...+...+.+....+.. .+.++++|+.|.+ .|...........++..+.+. .+ ...|.+..+..+||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~g~~ylD~~~~~~~~~v~~a~~~~~~--~~-~~~y~~~~~~~~l~~~l 85 (467)
T 1ax4_A 10 RIKMVEKIRVPSREEREAALKE-AGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMI--TG-DEAYAGSRNYYDLKDKA 85 (467)
T ss_dssp EEEEEEECCCCCHHHHHHHHHH-TTSCGGGSCGGGCSEECSCSSSCCCEEHHHHHHHH--TC-CCCSSSCHHHHHHHHHH
T ss_pred hhceeecccccchhHHHHHHHh-cCcCcccCCCCceeeecccCcCCHHHHHHHHHHHh--hc-ccccccCccHHHHHHHH
Confidence 3334444443344444444433 3445666766642 232211111222222223333 22 23687777899999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc----CCCE---EEEeCCCCCChHHHHHHcCCeeeEEEeec
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY----YQHT---VYLSQPTYGNHPNFFAAAGLAMKTYHYYD 168 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~----~Gd~---Vli~~P~y~~~~~~~~~~G~~~~~v~~~~ 168 (280)
++++.. +++++ |+||++|+.++ +..++. +||+ |+++.+.|..+...+...|.+++.++...
T Consensus 86 a~~~~~--------~~v~~--t~ggt~A~~~a--l~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (467)
T 1ax4_A 86 KELFNY--------DYIIP--AHQGRGAENIL--FPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 153 (467)
T ss_dssp HHHHCC--------CEEEE--ESSHHHHHHHH--HHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGG
T ss_pred HHHcCC--------CcEEE--cCCcHHHHHHH--HHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccc
Confidence 999732 57777 99999999999 777677 9998 99997777777888888899888776521
Q ss_pred ---C-----CCCCcCHHHHHHHHhcCC-CCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHhCCceeEEcccCC
Q 023599 169 ---P-----KTNGLDFQGMLQDLGAAP-SGAIVLLQASGHNPT-GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ 232 (280)
Q Consensus 169 ---~-----~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~NPT-G~~~~~~~l~~i~~~~~~~~~~ii~De~y~ 232 (280)
. .++.+|++.|++++++.. .+.++|++++||||| |.+++.+++++|+++|++||+++|+|+++.
T Consensus 154 ~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~ 227 (467)
T 1ax4_A 154 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF 227 (467)
T ss_dssp GGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred cccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhh
Confidence 1 134689999999997532 234588889999999 899999999999999999999999999854
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=175.68 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=135.6
Q ss_pred eecceeecCCCCccchHHHHHHHHHHhccCCCCCCCC--CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHH
Q 023599 47 LGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYL--PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSL 124 (280)
Q Consensus 47 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al 124 (280)
.+++.| +....++..+.+..+...+.. ....+.|. +.....+|++.+++++.. ++.++ +++|++|+
T Consensus 26 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~l~~~la~~~g~--------~~~i~--~~sG~~a~ 93 (398)
T 1gc0_A 26 GALVPP-VYQTATFTFPTVEYGAACFAG-EQAGHFYSRISNPTLNLLEARMASLEGG--------EAGLA--LASGMGAI 93 (398)
T ss_dssp TBSSCC-BCCCSCBCCC----------------------CCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHH
T ss_pred CCcCCC-ccCCCccccCCHHHHHHhhcC-CcCCCcccCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHH
Confidence 344554 444445555555554432221 11122232 445667899999998632 23344 66668999
Q ss_pred HHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 125 RIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 125 ~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
.++ +.+++.+||+|+++.|.|..+...+ ...|++++.++. .|++.+++++.++ .++|++++|+|
T Consensus 94 ~~~--l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~---~~~v~~~~~~n 161 (398)
T 1gc0_A 94 TST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMTPA---TRVIYFESPAN 161 (398)
T ss_dssp HHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCCTT---EEEEEEESSCT
T ss_pred HHH--HHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-------CCHHHHHHhcCCC---CeEEEEECCCC
Confidence 999 7777889999999999999887776 567888888876 2799999988754 34888899999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~~ 278 (280)
|||.+++ +++|.++|+++|+++|+|++|..+.+.. + + .. ...+++.|+||.++.+|+|+ ||+++.
T Consensus 162 ptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~--~------~-~~-~~d~~~~S~sK~~~~~~~~~~G~l~~~ 227 (398)
T 1gc0_A 162 PNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR--P------L-EL-GADLVVHSATKYLSGHGDITAGIVVGS 227 (398)
T ss_dssp TTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC--G------G-GG-TCSEEEEETTTTTTCSSSCCCEEEEEC
T ss_pred CCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC--c------h-hh-CceEEEECCccccCCCCCCeEEEEEEC
Confidence 9999986 7788999999999999999998765531 1 1 11 35688999999999999998 888764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-22 Score=180.04 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh----cCCC-EEEEeCCCCCChHHHHHH---cCC
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH----YYQH-TVYLSQPTYGNHPNFFAA---AGL 159 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~----~~Gd-~Vli~~P~y~~~~~~~~~---~G~ 159 (280)
..++++++++++.. .++++++ |+|+++|+.++ +.+++ .+|| +|+++.+.|+.+...+.. .|+
T Consensus 65 ~~~l~~~la~~~~~------~~~~v~~--~~g~t~al~~~--~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~ 134 (400)
T 3vax_A 65 VERAREYLASTVSA------EPDELIF--TSGATESNNIA--LLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGF 134 (400)
T ss_dssp HHHHHHHHHHHTTC------CGGGEEE--ESCHHHHHHHH--HHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCC------CCCcEEE--eCCHHHHHHHH--HHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCC
Confidence 56788888887532 2478888 99999999999 77766 7999 999999999887665554 699
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.+++ + +++.+|++.+++++.+++ +++++++|+||||.+++ +++|+++|+++|+++|+|++|......
T Consensus 135 ~~~~v~~-~-~~~~~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~-- 204 (400)
T 3vax_A 135 EVDFLTP-G-PSGRISVEGVMERLRPDT---LLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGKVP-- 204 (400)
T ss_dssp EEEEECC-C-TTCCCCHHHHHTTCCTTE---EEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTSG--
T ss_pred eEEEEcc-C-CCCCcCHHHHHHhcCCCc---eEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCCC--
Confidence 9999998 3 367789999999887543 48999999999999998 467889999999999999999753321
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
..+... ..+++.|+||.+|.+| +|+++
T Consensus 205 ------~~~~~~--~d~~~~s~~K~~g~~g--~g~~~ 231 (400)
T 3vax_A 205 ------GDLTTP--IDMISISGHKIGAPKG--VGALV 231 (400)
T ss_dssp ------GGGGSC--CSEEEEETGGGTSCSS--CEEEE
T ss_pred ------cChhhc--CcEEEEeHHHhCCCCc--eEEEE
Confidence 111111 3478999999877555 56665
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=172.11 Aligned_cols=162 Identities=17% Similarity=0.075 Sum_probs=128.6
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHc
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAA 157 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~ 157 (280)
+.+..+..+|++++++++... +.+++ ++| ++|+.++ +..++.+||+|+++.|+|...... ++..
T Consensus 48 ~~~~~~~~~l~~~la~~~~~~-------~~i~~--~sG-t~a~~~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~ 115 (386)
T 1cs1_A 48 RRGNPTRDVVQRALAELEGGA-------GAVLT--NTG-MSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG 115 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHTCS-------EEEEE--SSH-HHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTT
T ss_pred CCCCccHHHHHHHHHHHhCCC-------cEEEe--CCH-HHHHHHH--HHHHhCCCCEEEEecCCcHhHHHHHHHHHHhc
Confidence 345566789999999997431 44443 555 9999999 677788999999999999864443 3567
Q ss_pred CCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 158 GLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 158 G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
|++++.++. .|++.+++++.++++ +|++++|+||||.+++ +++|.++|+++|+++|+||+|..+...
T Consensus 116 g~~~~~~~~-------~d~~~l~~~i~~~~~---~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 116 CYRVLFVDQ-------GDEQALRAALAEKPK---LVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp SCEEEEECT-------TCHHHHHHHHHTCCS---EEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred CCEEEEeCC-------CCHHHHHHhhccCCc---EEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 888888876 289999999986554 7888999999999996 678889999999999999999988764
Q ss_pred cCCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~~ 278 (280)
. + + +. ...+++.|+||.++.+|.|+ ||+++.
T Consensus 183 ~--~------~-~~-~~di~~~s~sK~~~~~~~~~~G~~~~~ 214 (386)
T 1cs1_A 183 N--P------L-AL-GADLVLHSCTKYLNGHSDVVAGVVIAK 214 (386)
T ss_dssp C--G------G-GG-TCSEEEEETTTTTTCSSCCCCEEEEES
T ss_pred C--c------c-cc-CceEEEEcCcccccCCCCceeEEEEeC
Confidence 1 1 1 12 35688999999999999998 998874
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-22 Score=177.15 Aligned_cols=164 Identities=13% Similarity=0.063 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeee
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMK 162 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~ 162 (280)
.+..++|+++++++.. .++ ++++ |+||++|+.++ +.+++.+||+|++++|+|..+ ...++..|++++
T Consensus 52 ~~~~~l~~~la~~~g~------~~~~~i~~--~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 121 (393)
T 2huf_A 52 KIMDDIKEGVRYLFQT------NNIATFCL--SASGHGGMEAT--LCNLLEDGDVILIGHTGHWGDRSADMATRYGADVR 121 (393)
T ss_dssp HHHHHHHHHHHHHHTC------CCSEEEEE--SSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCC------CCCcEEEE--cCcHHHHHHHH--HHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeE
Confidence 4678899999999732 123 6777 99999999999 777788999999999999764 334566899999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
.+++ ++ ++.+|++.+++++.+ +++ +|++++|+||||.+++ +++|+++|+++|+++|+|+++......
T Consensus 122 ~v~~-~~-~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~~~~~---- 189 (393)
T 2huf_A 122 VVKS-KV-GQSLSLDEIRDALLIHKPS---VLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASLGGAP---- 189 (393)
T ss_dssp EEEC-CT-TCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBTTBC----
T ss_pred EEeC-CC-CCCCCHHHHHHHHhccCCc---EEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCCC----
Confidence 9998 33 457899999999986 555 7888999999999998 678899999999999999997532211
Q ss_pred hhHHHHhhhcCCeEEEEeccccc-ccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKT-MGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~RvG~~v~~ 278 (280)
..+ ......+++.|+||. +|++|+ ||+++.
T Consensus 190 ----~~~-~~~~~d~~~~s~sK~l~g~~G~--G~~~~~ 220 (393)
T 2huf_A 190 ----MFM-DRWEIDAMYTGSQKVLGAPPGI--TPVSFS 220 (393)
T ss_dssp ----CCT-TTTTCSEEECCSSSTTCCCSSC--EEEEEC
T ss_pred ----cch-hhcCccEEEECCCcccccCCCe--EEEEEC
Confidence 011 111356788999997 567887 998874
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=175.56 Aligned_cols=183 Identities=16% Similarity=0.055 Sum_probs=134.2
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCCC----CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hc
Q 023599 61 LLNAVRQAEQLLVNDLSADKEYLPITG----LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HY 135 (280)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~y~~~~G----~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~ 135 (280)
++...++..+.+. ......|.+..| ..++++.+++++. . +++++ +++|++|+.++ +.++ +.
T Consensus 15 ~~~~~~a~~~~~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~g-~-------~~~i~--~~~gt~al~~~--~~~~~~~ 80 (418)
T 2c81_A 15 SDRTRRKIEEVFQ--SNRWAISGYWTGEESMERKFAKAFADFNG-V-------PYCVP--TTSGSTALMLA--LEALGIG 80 (418)
T ss_dssp CHHHHHHHHHHHH--HTCCSTTSBCCSSCCHHHHHHHHHHHHHT-C-------SEEEE--ESCHHHHHHHH--HHHTTCC
T ss_pred CHHHHHHHHHHHh--cCCccccCcccCCHHHHHHHHHHHHHHhC-C-------CcEEE--eCCHHHHHHHH--HHHcCCC
Confidence 4444444444444 222233777778 4567777777642 1 23444 77789999999 7777 78
Q ss_pred CCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 023599 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIR 215 (280)
Q Consensus 136 ~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~ 215 (280)
+||+|+++.|+|..+...++..|++++.++. +++++.+|++.+++++.+++ .+|++ +||||... ++++|.
T Consensus 81 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~~~~---~~v~~---~~~~G~~~---~~~~i~ 150 (418)
T 2c81_A 81 EGDEVIVPSLTWIATATAVLNVNALPVFVDV-EADTYCIDPQLIKSAITDKT---KAIIP---VHLFGSMA---NMDEIN 150 (418)
T ss_dssp TTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHGGGCCTTE---EEECC---BCCTTCCC---CHHHHH
T ss_pred CcCEEEECCCccHhHHHHHHHcCCEEEEEec-CCCCCCcCHHHHHHhhCCCC---eEEEE---eCCcCCcc---cHHHHH
Confidence 9999999999999999999999999999998 45568899999999886543 36664 56999864 577889
Q ss_pred HHHHhCCceeEEcccCCCcc-cCcCCChhHHHHhhhcCCeEEEEecc--cccccccccccceEEEE
Q 023599 216 QLMRLKRLLPFFDCAYQGFV-MNMDADALPVRMFVADGGECLVAQSY--SKTMGLYGERVGALSVV 278 (280)
Q Consensus 216 ~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RvG~~v~~ 278 (280)
++|+++|++||+|++|..+. ++.. . +....+ +.+.|| ||.++. | |+||++..
T Consensus 151 ~~~~~~~~~li~D~a~~~~~~~~~~-~------~~~~~~--~~~~s~s~~K~~~~-g-~~g~~~~~ 205 (418)
T 2c81_A 151 EIAQEHNLFVIEDCAQSHGSVWNNQ-R------AGTIGD--IGAFSCQQGKVLTA-G-EGGIIVTK 205 (418)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTE-E------TTSSSS--EEEEECCTTSSSCS-S-SCEEEEES
T ss_pred HHHHHCCCEEEEECcccccCccCCE-e------cccccc--eEEEeccCCcccCC-C-CeEEEEEC
Confidence 99999999999999999986 5421 1 111112 667888 999996 8 99999873
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=173.92 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=128.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcCCe
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAGLA 160 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~ 160 (280)
.....+|++++++++.. ++.++ +++|++|+.++ +.+++.+||+|+++.|+|..+... ++..|++
T Consensus 58 ~~~~~~l~~~la~~~g~--------~~~i~--~~sG~~ai~~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 125 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGA--------AGSAA--FGSGMGAISSS--TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIE 125 (389)
T ss_dssp CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 44567899999998632 23444 77788999999 777788999999999999876665 5678999
Q ss_pred eeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 161 MKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 161 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++.++. .|++.+++++++++ .+|++++|+||||.+++ +++|.++|+++|+++|+|++|..+....
T Consensus 126 ~~~v~~-------~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~-- 190 (389)
T 3acz_A 126 VDLIDT-------SDVEKVKAAWKPNT---KMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK-- 190 (389)
T ss_dssp EEEECT-------TCHHHHHHTCCTTE---EEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred EEEECC-------CCHHHHHHhcCCCC---eEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC--
Confidence 998886 38999999887543 48888999999999997 6788999999999999999998876531
Q ss_pred ChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~~ 278 (280)
+ + +. ...+++.|+||.++.+|.|+ ||+++.
T Consensus 191 ~------~-~~-~~di~~~S~sK~~~~~~~~~~G~v~~~ 221 (389)
T 3acz_A 191 P------L-EL-GADIALHSVSKYINGHGDVIGGVSSAK 221 (389)
T ss_dssp G------G-GT-TCSEEEEETTTTTTCSSCCCCEEEEES
T ss_pred c------c-cc-CCeEEEECChhhccCCCCceeEEEEEC
Confidence 1 1 12 35688999999999999999 998875
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=181.44 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=147.8
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCe--EEeecccchhHHHHHHHHHHhhcCC
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRV--STVQCLSGSGSLRIGADFLAKHYYQ 137 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i--~~v~t~g~~~al~~~~~~~~~~~~G 137 (280)
.+.+.+.++..... ......|....+...+++.+++++....+....++++ ++ |+||++++.++ +.++..+|
T Consensus 111 ~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~--t~ggt~a~~~a--l~a~~~~g 184 (514)
T 3mad_A 111 HHIAFLNEVYALQS--QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTV--TSGGTESLLLA--MKTYRDWA 184 (514)
T ss_dssp HHHHHHHHHHHHHT--TCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEE--ESSHHHHHHHH--HHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEE--cCcHHHHHHHH--HHHHHHHh
Confidence 34445555554443 2223445555566677777777765544443334677 66 99999999999 66666665
Q ss_pred --------CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHH
Q 023599 138 --------HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQ 209 (280)
Q Consensus 138 --------d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~ 209 (280)
|+|+++.|+|..+...++..|++++.+++ ++ ++.+|++.|++++.++ .++|++++|+||||.+.+
T Consensus 185 ~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~-~~-~~~~d~~~Le~~i~~~---~~~v~~~~~~nptG~~~~-- 257 (514)
T 3mad_A 185 RATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL-DA-DYRADVAAMREAITPN---TVVVAGSAPGYPHGVVDP-- 257 (514)
T ss_dssp HHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECB-CT-TSCBCHHHHHHHCCTT---EEEEEEETTCTTTCCCCC--
T ss_pred hhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeee-CC-CCCCCHHHHHHHhccC---CEEEEEeCCCCCCccccC--
Confidence 99999999999999999999999999998 33 6789999999999754 348899999999999987
Q ss_pred HHHHHHHHHHhCCceeEEcccCCCcccCc----CCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 210 QWEQIRQLMRLKRLLPFFDCAYQGFVMNM----DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 210 ~l~~i~~~~~~~~~~ii~De~y~~~~~~~----~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+++|.++|++||+++|+|++|..+.... ..+..+ ... ......+++.|++|.++ +|.++||+++..
T Consensus 258 -l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~-~~~-~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~ 327 (514)
T 3mad_A 258 -IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP-FDF-RLEGVTSVSADTHKYGY-GAKGTSVILYRR 327 (514)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCC-CST-TSTTCCEEEECTTTTTC-CCSSCEEEEESS
T ss_pred -HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCc-ccc-cCCCCcEEEECchhccC-CCCCeEEEEEeC
Confidence 5778899999999999999999886520 000000 001 11123577899999875 789999998753
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=173.60 Aligned_cols=198 Identities=15% Similarity=0.022 Sum_probs=138.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCC-CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYL-PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
+.+++++|+.|.| . .+....+++.+.+. . ..|. +..+..+||+++++++.. +++++ ++
T Consensus 20 ~~~~~~~l~~~~p---~---~~~~~~~a~~~~~~--~---~~~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~ 78 (391)
T 3dr4_A 20 HMSDLPRISVAAP---R---LDGNERDYVLECMD--T---TWISSVGRFIVEFEKAFADYCGV--------KHAIA--CN 78 (391)
T ss_dssp --------CCCCC---C---CCSSHHHHHHHHHH--H---TCCSSCSHHHHHHHHHHHHHHTC--------SEEEE--ES
T ss_pred hcCCCceeccCCC---C---CCHHHHHHHHHHHH--c---CCccCCChHHHHHHHHHHHHhCC--------CcEEE--eC
Confidence 3357888988885 2 23334444433333 1 2354 667899999999999732 34555 88
Q ss_pred cchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 119 SGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 119 g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
||++|+.++ +..+ +.+||+|+++.|+|..+...++..|++++.++. +++++.+|++.+++++.+++ .+++
T Consensus 79 ~gt~al~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~~~~---~~v~--- 149 (391)
T 3dr4_A 79 NGTTALHLA--LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDN-DPRTFNLDAAKLEALITPRT---KAIM--- 149 (391)
T ss_dssp SHHHHHHHH--HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCGGGSGGGCCTTE---EEEC---
T ss_pred CHHHHHHHH--HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEec-CccccCcCHHHHHHhcCCCc---eEEE---
Confidence 999999999 7777 789999999999999999999999999999998 55678899999999886543 3555
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
++||||...+ +++|.++|+++|+++|+|++|.......... .....+ +.+.||||..+++|.|.||++.
T Consensus 150 ~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~------~~~~~d--i~~~S~s~~K~l~~g~gg~~~~ 218 (391)
T 3dr4_A 150 PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKK------SGSLGD--CATFSFFGNAIITTGEGGMITT 218 (391)
T ss_dssp CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEE------TTSSSS--EEEEECBTTSSSCCBSCEEEEE
T ss_pred EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCee------ecccCC--EEEEECCCCCcCCcCCeEEEEE
Confidence 5789999765 6677899999999999999998643311111 111112 6678877444445678898876
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
.
T Consensus 219 ~ 219 (391)
T 3dr4_A 219 N 219 (391)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=170.70 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=135.9
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.|...+.-++ .++..++++.+.+.. .......++.....+|++.+++++ + .+++++ |+|
T Consensus 55 ~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~----g----~~~v~~--~~g 122 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGH-CHPALVEALKSQGET-LWHTSNVFTNEPALRLGRKLIDAT----F----AERVLF--MNS 122 (420)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTT-CCCCCTTSCCHHHHHHHHHHHHHS----S----CSEEEE--ESS
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHHh-cccccCccCCHHHHHHHHHHHhhC----C----CCeEEE--eCC
Confidence 3456889988842122232 233444444444431 111111112223345566666553 1 378887 999
Q ss_pred chhHHHHHHHHHHhhc-------CC-CEEEEeCCCCCChHH-HHHHcCCe------------eeEEEeecCCCCCcCHHH
Q 023599 120 GSGSLRIGADFLAKHY-------YQ-HTVYLSQPTYGNHPN-FFAAAGLA------------MKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~-------~G-d~Vli~~P~y~~~~~-~~~~~G~~------------~~~v~~~~~~~~~~d~~~ 178 (280)
|++|++++ +..+.. +| ++|++++|+|..+.. .+...|.+ +..++. .|++.
T Consensus 123 gteA~~~a--l~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~ 193 (420)
T 2pb2_A 123 GTEANETA--FKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHA 193 (420)
T ss_dssp HHHHHHHH--HHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHH
T ss_pred HHHHHHHH--HHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHH
Confidence 99999999 555443 67 499999999977643 44445543 333332 38999
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
|++++.++ .++|++++++|++|. +++.+++++|.++|++||+++|+||+|.++.+... ..+. ...+...+++
T Consensus 194 le~~i~~~---~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~--~~~~-~~~~~~~dii- 266 (420)
T 2pb2_A 194 VKAVMDDH---TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD--LFAY-MHYGVTPDIL- 266 (420)
T ss_dssp HHHHCCTT---EEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHH-HHHTCCCSEE-
T ss_pred HHHHhccC---ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc--HHHH-HhcCCCCCeE-
Confidence 99988643 347777888888884 69999999999999999999999999988765421 1111 2223334555
Q ss_pred EecccccccccccccceEEEEc
Q 023599 258 AQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||||.++ +|+|+||+++..
T Consensus 267 --t~sK~l~-~G~~iG~~~~~~ 285 (420)
T 2pb2_A 267 --TSAKALG-GGFPVSAMLTTQ 285 (420)
T ss_dssp --EECGGGG-TTSCCEEEEECH
T ss_pred --Eeccccc-CCCceEEEEEhH
Confidence 7899999 899999998753
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-22 Score=175.54 Aligned_cols=167 Identities=8% Similarity=-0.004 Sum_probs=129.3
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~ 163 (280)
....++++++++++.... ..+++++ |+|+++++. + +..++.+||+|++++|+|.. +...++..|++++.
T Consensus 35 ~~~~~~~~~la~~~~~~~----~~~~v~~--~~g~t~al~-~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~ 105 (384)
T 3zrp_A 35 EALAYSLKGLRYVMGASK----NYQPLII--PGGGTSAME-S--VTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKV 105 (384)
T ss_dssp HHHHHHHHHHHHHHTCCT----TSEEEEE--ESCHHHHHH-H--GGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCC----CCcEEEE--cCCcHHHHH-H--HHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEE
Confidence 346778899998864221 1266777 999999999 8 77788999999999999954 55666778999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
+++ + .++.+|++.+++++.+. +..++++++|+||||.+++ +++|.++|++||+++|+|++|........
T Consensus 106 v~~-~-~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~~---- 174 (384)
T 3zrp_A 106 LRP-S-PGDYVKPGEVEEEVRKS--EYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVGAEEVK---- 174 (384)
T ss_dssp ECC-S-TTCCCCHHHHHHHHHHS--CEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTTTSCCC----
T ss_pred ecC-C-CCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccccCcccc----
Confidence 998 3 35678999999999873 2348888999999999998 66789999999999999999875443211
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ ......+++.|+||.++ .+.++||+++.
T Consensus 175 ----~-~~~~~d~~~~s~~K~~~-~~~g~g~~~~~ 203 (384)
T 3zrp_A 175 ----A-EEWNVDVYLTASQKALG-SAAGLGLLLLS 203 (384)
T ss_dssp ----T-TTTTCSEEEEETTSTTC-CCSSEEEEEEC
T ss_pred ----c-cccCCCEEEecCccccc-CCCceEEEEEC
Confidence 1 11134588999999885 34559998875
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-22 Score=173.81 Aligned_cols=162 Identities=13% Similarity=0.012 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH--HHHHHcCCeeeE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP--NFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~--~~~~~~G~~~~~ 163 (280)
.+..++|+++++++.. +++++++ |+||++++.++ +.+++.+||+|++++|+|..+. ..++..|++++.
T Consensus 34 ~~~~~l~~~la~~~g~------~~~~i~~--~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 103 (352)
T 1iug_A 34 EVFLKARGLLREAFRT------EGEVLIL--TGSGTLAMEAL--VKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVER 103 (352)
T ss_dssp HHHHHHHHHHHHHHTC------SSEEEEE--ESCHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCC------CCceEEE--cCchHHHHHHH--HHhccCCCCeEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 3568899999999732 2367777 99999999999 7777889999999999998864 445668999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC--CceeEEcccCCCcccCcCCC
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK--RLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~--~~~ii~De~y~~~~~~~~~~ 241 (280)
++. + +++.+|++.+++ ++++ ++++++|+||||.+++ +++|.++|+++ |+++|+|++|....... +
T Consensus 104 v~~-~-~~~~~d~~~l~~---~~~~---~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~~~~~~~--~ 170 (352)
T 1iug_A 104 LDY-P-YGDTPRPEDVAK---EGYA---GLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTSLLVGEV--A 170 (352)
T ss_dssp EEC-C-TTCCCCTTTSCC---SSCS---EEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTTBTTBCC--C
T ss_pred EeC-C-CCCCCCHHHHhc---cCCc---EEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCccccCcce--e
Confidence 998 3 345678888776 3333 7888999999999998 56788999999 99999999986322110 1
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+... ...+++.|+||.++ .+.++||+++.
T Consensus 171 ------~~~~-~~d~~~~s~~K~~~-~~~g~G~~~~~ 199 (352)
T 1iug_A 171 ------LEAM-GVDAAASGSQKGLM-CPPGLGFVALS 199 (352)
T ss_dssp ------SGGG-TCSEEEEESSSTTC-CCSCEEEEEEC
T ss_pred ------cccc-CeeEEEecCccccc-CCCceeEEEEC
Confidence 1111 24577999999543 22347998874
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=169.78 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCeeeEEE
Q 023599 90 EFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAMKTYH 165 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~~~v~ 165 (280)
+|++++++++.. ++.++ +++|++|+.++ +.+++.+||+|+++.|+|..+...+ +..|++++.++
T Consensus 2 ~l~~~la~~~g~-------~~~i~---~~sG~~a~~~~--~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLEHA-------EACAA---TASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTC-------SEEEE---ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHhCC-------CeEEE---eCChHHHHHHH--HHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 689999999632 13343 55559999999 7777889999999999999887665 45799988887
Q ss_pred eecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh-CCceeEEcccCCCcccCcCCChhH
Q 023599 166 YYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL-KRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
. .|++.+++.++++ ..++++++|+||||.+++ +++|.++|++ +|+++|+|++|..+.+.. +
T Consensus 70 ~-------~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~--~--- 131 (331)
T 1pff_A 70 M-------AVPGNIEKHLKPN---TRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN--P--- 131 (331)
T ss_dssp T-------TSTTHHHHTCCTT---EEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC--G---
T ss_pred C-------CCHHHHHHhhcCC---CeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC--h---
Confidence 5 3788898888654 348888999999999996 7788999999 999999999998665421 1
Q ss_pred HHHhhhcCCeEEEEecccccccccccc-cceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGER-VGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~R-vG~~v~~ 278 (280)
+ + ....+++.|+||.|+.+|.| +||+++.
T Consensus 132 ---~-~-~~~d~~~~s~~K~~~~~~~r~~G~~~~~ 161 (331)
T 1pff_A 132 ---L-D-LGVDIVVHSATKYINGHTDVVAGLVCSR 161 (331)
T ss_dssp ---G-G-GTCSEEEEETTTTTSSSSSCCCEEEEEC
T ss_pred ---h-h-cCCcEEEEECccccCCCCCceEEEEEeC
Confidence 1 1 23678899999999999999 7999875
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=171.52 Aligned_cols=191 Identities=10% Similarity=-0.019 Sum_probs=143.1
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
++|+|+. | . ++.+.+++..+.+. .. .|.+..+..+||+++++++.. +++++ |+||++
T Consensus 9 ~~i~~~~--p---~---~~~~~~~a~~~~~~--~~---~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt~ 65 (393)
T 1mdo_A 9 DFLPFSR--P---A---MGAEELAAVKTVLD--SG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATA 65 (393)
T ss_dssp CCBCSCC--C---C---CCHHHHHHHHHHHH--HT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHH
T ss_pred cccccCC--C---C---CCHHHHHHHHHHHh--cC---CcCCChHHHHHHHHHHHHhCC--------CcEEE--ecChHH
Confidence 4677764 3 2 34444544444443 11 244567889999999999732 35666 999999
Q ss_pred HHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCC
Q 023599 123 SLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201 (280)
Q Consensus 123 al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NP 201 (280)
|+.++ +.++ +.+||+|+++.|+|..+...++..|++++.+++ +++++.+|++.+++++.+++ .+|++ +||
T Consensus 66 al~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~~~~---~~v~~---~~~ 136 (393)
T 1mdo_A 66 GMHIA--LMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDV-DRDTLMVTPEHIEAAITPQT---KAIIP---VHY 136 (393)
T ss_dssp HHHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCCTTE---EEECC---BCG
T ss_pred HHHHH--HHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEec-cCCcCCCCHHHHHHhcCCCc---eEEEE---eCC
Confidence 99999 7777 789999999999999999999999999999998 55557899999999987543 36665 358
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCc-ccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGF-VMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
||...+ +++|.++|+++|+++|+|++|... .++. .+ + +. ..+++.||||+.+++|.|+||++..
T Consensus 137 ~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~------~-~~--~d~~~~S~~k~K~l~~~~~g~~~~~ 201 (393)
T 1mdo_A 137 AGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKG-RH------I-GA--RGTAIFSFHAIKNITCAEGGIVVTD 201 (393)
T ss_dssp GGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT-EE------T-TS--SSEEEEECCTTSSSCSSSCEEEEES
T ss_pred CCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECC-ee------c-CC--CCeEEEeCCCCCccccccceEEEeC
Confidence 999865 678889999999999999999864 3431 11 1 11 5688999995545566799999874
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=172.31 Aligned_cols=207 Identities=12% Similarity=0.029 Sum_probs=141.4
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
++..|+|+.+.+ . .+.+.+.+++.+.. ......|.+.....++++.+++++. . +.++++ |+||
T Consensus 6 ~~~~id~~~~~~----~--~~~~~v~~a~~~~~--~~~~~~~~~~~~~~~l~~~la~~~g-~------~~~v~~--~~~g 68 (356)
T 1v72_A 6 RPPALGFSSDNI----A--GASPEVAQALVKHS--SGQAGPYGTDELTAQVKRKFCEIFE-R------DVEVFL--VPTG 68 (356)
T ss_dssp CCCCCBCSCGGG----C--CCCHHHHHHHHHTT--SSCCCSTTCSHHHHHHHHHHHHHHT-S------CCEEEE--ESCH
T ss_pred CCceEeeccCCc----c--CCCHHHHHHHHhhc--cCcccccccchHHHHHHHHHHHHhC-C------CCcEEE--eCCc
Confidence 467899998763 2 23344444444433 1223445544455678888888752 1 245777 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH--HHHc--CCeeeEEEeecCCCCCcCHHHHHH-HHhcC----CCCcE
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF--FAAA--GLAMKTYHYYDPKTNGLDFQGMLQ-DLGAA----PSGAI 191 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~--~~~~--G~~~~~v~~~~~~~~~~d~~~l~~-~~~~~----~~~~~ 191 (280)
++++.++ +..+..+||+|+++.|+|..+... +... |++++.++. + ++.+|++.+++ ++.+. ..+.+
T Consensus 69 t~a~~~a--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~--~~~~d~~~l~~~~i~~~~~~~~~~~~ 143 (356)
T 1v72_A 69 TAANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG-P--AAKLDIVRLRERTREKVGDVHTTQPA 143 (356)
T ss_dssp HHHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC-G--GGCCCHHHHHHHTTSSTTCTTSCEEE
T ss_pred cHHHHHH--HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecC-C--CCeEcHHHHHHHhhhcchhhccCCce
Confidence 9999999 777778999999999988655444 5666 999998887 3 35789999999 88652 11345
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC-cCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN-MDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
+|++++||| ||.+++.+++++|+++|++||+++|+|++|..+... ..... ....+ +....++ +.|+||. |.
T Consensus 144 ~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~-~~~~d~~-~~s~sK~----g~ 215 (356)
T 1v72_A 144 CVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTW-KAGVDAL-SFGATKN----GV 215 (356)
T ss_dssp EEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTG-GGTCCEE-EECCGGG----TC
T ss_pred EEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhh-hhcCCEE-EEecccC----CC
Confidence 888888887 999999999999999999999999999999764320 00111 00111 1123455 4589997 34
Q ss_pred ccc--eEEE
Q 023599 271 RVG--ALSV 277 (280)
Q Consensus 271 RvG--~~v~ 277 (280)
|+| |+++
T Consensus 216 ~~G~g~~~~ 224 (356)
T 1v72_A 216 LAAEAIVLF 224 (356)
T ss_dssp SSCEEEEES
T ss_pred cCccEEEEE
Confidence 788 5543
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=170.56 Aligned_cols=220 Identities=10% Similarity=-0.055 Sum_probs=140.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccC-CCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKE-NRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~-~~i~~v~t~ 118 (280)
.+...+||+.|.+...-|+ .++..++++.+.+. .. ..|....|..++++++++++...... .. +++++ |+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~--~~--~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~--~~ 111 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAA--NP--AGATILSASNAPAVTLAERLLASFPG--EGTHKIWF--GH 111 (439)
T ss_dssp TSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHH--SC--SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEE--ES
T ss_pred CCCEEEECCCchhhccCCC-CCHHHHHHHHHHHH--hc--cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEE--eC
Confidence 3457899998875222232 33444444445444 22 33554566667777777776554321 22 57877 99
Q ss_pred cchhHHHHHHHHHHh--hcCCCEEEEeCCCCCChHHHHHHcCCe---------------eeEEEeecCCCCCc-----CH
Q 023599 119 SGSGSLRIGADFLAK--HYYQHTVYLSQPTYGNHPNFFAAAGLA---------------MKTYHYYDPKTNGL-----DF 176 (280)
Q Consensus 119 g~~~al~~~~~~~~~--~~~Gd~Vli~~P~y~~~~~~~~~~G~~---------------~~~v~~~~~~~~~~-----d~ 176 (280)
||++|++.+ +... ..++++|++.+|+|..+.......+.. +..++. +..+.. |+
T Consensus 112 ggsea~~~a--l~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~ 187 (439)
T 3dxv_A 112 SGSDANEAA--YRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPY--RPYRNDPTGDAIL 187 (439)
T ss_dssp SHHHHHHHH--HHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSS--SCBTTBTTSHHHH
T ss_pred CHHHHHHHH--HHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCC--CcccccccHHHHH
Confidence 999999999 4443 346789999999997665444333221 122332 111111 68
Q ss_pred HHHHHHHh-cCCCCcEEEEecCCCCCCCCCCCHH-HHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCe
Q 023599 177 QGMLQDLG-AAPSGAIVLLQASGHNPTGIDPTAQ-QWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGE 254 (280)
Q Consensus 177 ~~l~~~~~-~~~~~~~~v~~~~p~NPTG~~~~~~-~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 254 (280)
+.|++++. ..+.+.+++++++++|++|.+.+.+ .+++|.++|++||+++|+||+|.+|....... . ....+...+
T Consensus 188 ~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~--~-~~~~~~~~d 264 (439)
T 3dxv_A 188 TLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH--C-FEHEGFVPD 264 (439)
T ss_dssp HHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS--G-GGGTTCCCS
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh--H-HHhcCCCCC
Confidence 99999994 3233456777777888888876544 49999999999999999999999875532111 1 112222234
Q ss_pred EEEEecccccccccccccceEEEEc
Q 023599 255 CLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 255 ~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++ ||||.++ +|+|+||+++..
T Consensus 265 i~---s~sK~~~-~G~riG~~~~~~ 285 (439)
T 3dxv_A 265 IL---VLGKGLG-GGLPLSAVIAPA 285 (439)
T ss_dssp EE---EECGGGG-TTSCCEEEEEEH
T ss_pred EE---EEcchhc-CCcceEEEEECH
Confidence 44 9999999 699999998753
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=170.75 Aligned_cols=160 Identities=14% Similarity=0.055 Sum_probs=128.3
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCC
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGL 159 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~ 159 (280)
+.....+|++.+++++.. +++++ ++||++|+.++ +..++.+||+|+++.|+|..+...+ +..|+
T Consensus 64 ~~~~~~~l~~~la~~~g~--------~~~~~--~~sGt~A~~~a--l~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 131 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDA--------AFGRA--FSSGMAAADCA--LRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV 131 (392)
T ss_dssp CCHHHHHHHHHHHHHTTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred CChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence 444567899999998532 34555 88999999999 7777889999999999998777666 56799
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.++. .|++.+++++.+++ ++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.......
T Consensus 132 ~~~~v~~-------~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~- 197 (392)
T 3qhx_A 132 EYTPVAL-------ADLDAVRAAIRPTT---RLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ- 197 (392)
T ss_dssp EEEEECT-------TCHHHHHHHCCTTE---EEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-
T ss_pred EEEEeCC-------CCHHHHHHhhCCCC---eEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 9998886 28999999987543 48889999999999976 7788999999999999999998664421
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
+ + +. ...+++.|+||.++.+| +|+||++..
T Consensus 198 -~------~-~~-~~di~~~S~sK~lg~~g~~~~G~v~~~ 228 (392)
T 3qhx_A 198 -P------L-SL-GADVVLHSTTKYIGGHSDVVGGALVTN 228 (392)
T ss_dssp -G------G-GG-TCSEEEEETTTTTTCSSCCCCEEEEES
T ss_pred -h------H-Hh-CCcEEEEcCccccCCCCCceEEEEEEC
Confidence 1 1 12 23478999999999877 799999875
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=169.75 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=130.6
Q ss_pred CCCCCC--CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH---
Q 023599 80 KEYLPI--TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF--- 154 (280)
Q Consensus 80 ~~y~~~--~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~--- 154 (280)
+.|... ...+++++.+++++.. +++++ |+||++|+.++ +.+++.+||+|+++.|.|..+...+
T Consensus 48 ~~y~~~~~~~~~~l~~~la~~~g~--------~~~~~--~~~gt~a~~~a--l~~l~~~gd~vi~~~~~~~~~~~~~~~~ 115 (412)
T 2cb1_A 48 YVYARQKDPTAKALEERLKALEGA--------LEAVV--LASGQAATFAA--LLALLRPGDEVVAAKGLFGQTIGLFGQV 115 (412)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEETTCCHHHHHHHHHT
T ss_pred cCcCCCCChHHHHHHHHHHHHhCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHH
Confidence 456543 4578899999998632 45666 99999999999 7777889999999999998665553
Q ss_pred -HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 155 -AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 155 -~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
+..|++++.++. |++.+++++.+++ ++|++++|+||||.+++ +++|+++|+++|+++|+|++|..
T Consensus 116 ~~~~g~~~~~~~~--------~~~~l~~~i~~~~---~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~ 181 (412)
T 2cb1_A 116 LSLMGVTVRYVDP--------EPEAVREALSAKT---RAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGA 181 (412)
T ss_dssp TTTTTCEEEEECS--------SHHHHHHHCCTTE---EEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGT
T ss_pred HHHcCCEEEEECC--------CHHHHHHHhccCC---eEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcc
Confidence 347888888875 3889999886543 48888999999999986 77889999999999999999988
Q ss_pred cccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 234 FVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+.+.. .. . +. ...+++.|+||.++.||+|+||+++..
T Consensus 182 ~~~~~--~~-----~-~~-~~di~~~S~~K~~~~~~~~~G~~~~~~ 218 (412)
T 2cb1_A 182 AGALC--RP-----L-AW-GAHVVVESLTKWASGHGSVLGGAVLSR 218 (412)
T ss_dssp TTTSC--CG-----G-GG-TCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred ccccC--Cc-----c-cc-CCeEEEECCcccccCCCCcEEEEEEec
Confidence 73221 11 1 11 356889999999998999999998764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-21 Score=174.60 Aligned_cols=157 Identities=14% Similarity=0.081 Sum_probs=124.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcCC
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAGL 159 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G~ 159 (280)
+..+..+||+++++++.. ++.++ +++|++|++++ +. ++.+||+|+++.|.|..... .++..|+
T Consensus 53 ~~~~~~~lr~~la~~~g~--------~~~i~--~~sGt~a~~~a--l~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 119 (393)
T 1n8p_A 53 QNPNRENLERAVAALENA--------QYGLA--FSSGSATTATI--LQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGV 119 (393)
T ss_dssp CCHHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH--HH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred CChhHHHHHHHHHHHhCC--------CcEEE--ECChHHHHHHH--HH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 444578999999999632 23444 66669999999 66 78899999999999985444 3456788
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC----CceeEEcccCCCcc
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK----RLLPFFDCAYQGFV 235 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~----~~~ii~De~y~~~~ 235 (280)
+++.++. + | +.++++++++ .++|++++|+||||.+++ +++|.++|+++ |+++|+|++|..+.
T Consensus 120 ~v~~v~~-~------d-~~l~~~i~~~---t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~ 185 (393)
T 1n8p_A 120 ETSFTND-L------L-NDLPQLIKEN---TKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPY 185 (393)
T ss_dssp CCEEESS-H------H-HHHHHHSCSS---EEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHH
T ss_pred EEEEeCC-C------h-HHHHHhcccC---ceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccc
Confidence 9998887 2 6 8888888654 348888999999999996 67788999999 99999999998876
Q ss_pred cCcCCChhHHHHhhhcCCeEEEEeccccccccccccc-ceEEE
Q 023599 236 MNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV-GALSV 277 (280)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv-G~~v~ 277 (280)
+. +. . +. ...+++.|+||.+|.+|+|+ ||+++
T Consensus 186 ~~---~~---~---~~-~~di~~~S~sK~~g~~G~rigG~~~~ 218 (393)
T 1n8p_A 186 IS---NP---L---NF-GADIVVHSATKYINGHSDVVLGVLAT 218 (393)
T ss_dssp HC---CG---G---GG-TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred cC---CH---H---Hc-CCeEEEEECcccccCCCCceeEEEEe
Confidence 53 11 1 12 35688999999999999999 99876
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=174.52 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=125.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCC
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGL 159 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~ 159 (280)
+..+..+|++++++++... +.++ +++|++|+.++ +. ++.+||+|++++|.|......+ +..|+
T Consensus 65 ~~p~~~~l~~~la~~~g~~-------~~i~---~~sG~~ai~~~--~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDGAK-------YCLA---FASGLAATVTI--TH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp -CHHHHHHHHHHHHHHTCS-------EEEE---ESCHHHHHHHH--HT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred CCchHHHHHHHHHHHhCCC-------cEEE---ECCHHHHHHHH--HH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 4456789999999997432 4444 44557899998 66 7889999999999998754443 46799
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCC-ceeEEcccCCCcccCc
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKR-LLPFFDCAYQGFVMNM 238 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~-~~ii~De~y~~~~~~~ 238 (280)
+++.++. + |++.+++++++++ ++|++++|+||||.+++ +++|+++|+++| +++|+|++|..+.+..
T Consensus 132 ~v~~v~~-~------d~~~l~~~i~~~t---~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~ 198 (403)
T 3cog_A 132 KISFVDC-S------KIKLLEAAITPET---KLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR 198 (403)
T ss_dssp EEEEECT-T------SHHHHHHHCCTTE---EEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred EEEEECC-C------CHHHHHHhcCcCC---eEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence 9999887 1 7999999887543 48888999999999997 778899999999 9999999999887531
Q ss_pred CCChhHHHHhhhcCCeEEEEeccccccccccc-ccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGE-RVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RvG~~v~~ 278 (280)
+ + +. ...++++|+||.++.+|. |+||+++.
T Consensus 199 --~------~-~~-~~div~~S~sK~~~g~~~~~~G~v~~~ 229 (403)
T 3cog_A 199 --P------L-AL-GADISMYSATKYMNGHSDVVMGLVSVN 229 (403)
T ss_dssp --T------T-TT-TCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred --c------c-cc-CCeEEEEcChhhccCCCCCeEEEEEEC
Confidence 1 1 11 356889999999998775 79999874
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-21 Score=170.20 Aligned_cols=192 Identities=12% Similarity=0.036 Sum_probs=142.4
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
.+.++|+.|.+ . ..+ +.++..+... . ..|++..+..+||+++++++.. +++++ ++||+
T Consensus 6 ~~~~~l~~~~~---~----~~~-~~~~~~~~~~-~---~~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~~gt 63 (374)
T 3uwc_A 6 VPYSYLERQFA---D----IEP-YLNDLREFIK-T---ADFTLGAELEKFEKRFAALHNA--------PHAIG--VGTGT 63 (374)
T ss_dssp BCSCCHHHHTS---S----CHH-HHHHHHHHHH-H---TCCSSCHHHHHHHHHHHHHTTC--------SEEEE--ESCHH
T ss_pred ceeeccccCCC---C----chH-HHHHHHHHHH-c---CCcccChhHHHHHHHHHHHhCC--------CcEEE--eCCHH
Confidence 45678888774 2 222 4444443331 1 2477788899999999999632 35555 89999
Q ss_pred hHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+|+.++ +..+ +.+||+|+++.|+|..+...++..|++++.++. + +++.+|++.+++++.+++ .+++ |+|
T Consensus 64 ~a~~~~--~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~~~~~~---~~v~---~~n 133 (374)
T 3uwc_A 64 DALAMS--FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDS-E-NGYVIDPEKIEAAITDKT---KAIM---PVH 133 (374)
T ss_dssp HHHHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB-C-TTSSBCGGGTGGGCCTTE---EEEC---CBC
T ss_pred HHHHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEec-C-CCCCcCHHHHHHhCCCCc---eEEE---EeC
Confidence 999999 7777 789999999999999999999999999999998 3 567899999999886543 3555 899
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc-CcCCChhHHHHhhhcCCeEEEEeccc--ccccccccccceEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGGECLVAQSYS--KTMGLYGERVGALSV 277 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RvG~~v~ 277 (280)
|||.+.+ +++|.++|+++|+++|+|++|..+.. +.. . +.... -+++.|+| |.++.+|. .||++.
T Consensus 134 ~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~~-~------~~~~~--d~~~~s~~~~K~l~~~g~-~g~~~~ 200 (374)
T 3uwc_A 134 YTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRINDK-F------VGSWG--QFACFSLHPLKNLNVWSD-AGVIIT 200 (374)
T ss_dssp GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE-E------TTSSS--SEEEEECSSSSSSCCSSC-CEEEEE
T ss_pred CcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCCe-e------ccccc--cEEEEeCCCCCcCCccce-eEEEEe
Confidence 9999876 66788999999999999999987543 211 1 11111 35567766 99985576 787775
Q ss_pred E
Q 023599 278 V 278 (280)
Q Consensus 278 ~ 278 (280)
.
T Consensus 201 ~ 201 (374)
T 3uwc_A 201 H 201 (374)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=171.02 Aligned_cols=220 Identities=12% Similarity=0.026 Sum_probs=130.8
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.+.+.+.-|+. ++..++++.+.+. .. ..|.+..+..++++++++++..... ...++|++ |+|
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~--~~--~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~g 97 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHG-RAEVGERMAAQAA--RL--PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWA--VSG 97 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHH--HC--CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEE--ESS
T ss_pred CCCEEEECCCchhccccCCC-CHHHHHHHHHHHH--hc--ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCc
Confidence 34578999988542333332 4445555555544 11 2344444555566666666543322 23478888 999
Q ss_pred chhHHHHHHHHHHhh--------cCCCEEEEeCCCCCChHHHHHHcCC---------------eeeEEEeecCCC---CC
Q 023599 120 GSGSLRIGADFLAKH--------YYQHTVYLSQPTYGNHPNFFAAAGL---------------AMKTYHYYDPKT---NG 173 (280)
Q Consensus 120 ~~~al~~~~~~~~~~--------~~Gd~Vli~~P~y~~~~~~~~~~G~---------------~~~~v~~~~~~~---~~ 173 (280)
|++|+..+ +.... ..+++|++.+|+|.++.......+. .+..++. ++. ..
T Consensus 98 g~ea~~~a--l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 173 (430)
T 3i4j_A 98 GSEATESA--VKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK--PDPARNGA 173 (430)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECC--CCTTSCHH
T ss_pred HHHHHHHH--HHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCC--Ccccchhh
Confidence 99999999 55444 3468999999999887655444333 2333333 111 11
Q ss_pred cCHHHHHHHHhcCC-CCcEEEEecCCCC-CCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh
Q 023599 174 LDFQGMLQDLGAAP-SGAIVLLQASGHN-PTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA 250 (280)
Q Consensus 174 ~d~~~l~~~~~~~~-~~~~~v~~~~p~N-PTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 250 (280)
.|++.|++++++.. .+.++++++.++| ++|. +++.+++++|.++|++||+++|+||+|.+|..... ......+.+
T Consensus 174 ~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~--~~~~~~~~~ 251 (430)
T 3i4j_A 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS--PLALSRWSG 251 (430)
T ss_dssp HHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGTTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhhhhhcC
Confidence 35688998887421 2234555555566 8886 66888899999999999999999999999866421 111111102
Q ss_pred cCCeEEEEecccccccccc-cccceEEEE
Q 023599 251 DGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 251 ~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
...++ .+|||.++ .| ||+||+++.
T Consensus 252 ~~~di---~t~sK~l~-~G~~r~G~~~~~ 276 (430)
T 3i4j_A 252 VTPDI---AVLGKGLA-AGYAPLAGLLAA 276 (430)
T ss_dssp CCCSE---EEECGGGT-TTSSCCEEEEEC
T ss_pred CCCcE---EEEccccc-CCccccEEEEEC
Confidence 22333 36899999 59 999999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=169.01 Aligned_cols=141 Identities=18% Similarity=0.115 Sum_probs=108.8
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH---HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN---FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
+++++ |+||++++.++ +.++ +||+|+++.|+|+.+.. .++..|++++.+ . |++.++++ .+
T Consensus 77 ~~~~~--~~ggt~a~~~~--~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-~--------d~~~l~~~-~~- 139 (374)
T 2aeu_A 77 DKCVG--FNRTSSAILAT--ILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-D--------KVGEILNK-ID- 139 (374)
T ss_dssp EEEEE--ESSHHHHHHHH--HHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-S--------CHHHHHTT-CC-
T ss_pred ceEEE--EcChHHHHHHH--HHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-C--------CHHHHHhc-CC-
Confidence 66766 99999999999 6655 99999999999877554 566789988877 2 78888887 43
Q ss_pred CCCcEE-EEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccc
Q 023599 187 PSGAIV-LLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTM 265 (280)
Q Consensus 187 ~~~~~~-v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 265 (280)
+.++ +++++||||||. +..++++|.++|++||+++|+||+|..+.........+ .. . ...++++|+||.+
T Consensus 140 --~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~---~-~~di~~~S~sK~l 210 (374)
T 2aeu_A 140 --KDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPA-LK---L-GADLVVTSTDKLM 210 (374)
T ss_dssp --TTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCH-HH---H-TCSEEEEETTSSS
T ss_pred --CccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCc-cc---c-CCcEEEecCcccc
Confidence 2347 888999999997 88999999999999999999999998875200001001 11 1 2357899999985
Q ss_pred cccccccceEEEE
Q 023599 266 GLYGERVGALSVV 278 (280)
Q Consensus 266 ~~~G~RvG~~v~~ 278 (280)
+|+|+||+++.
T Consensus 211 --~g~~~G~~~~~ 221 (374)
T 2aeu_A 211 --EGPRGGLLAGK 221 (374)
T ss_dssp --SSCSCEEEEEE
T ss_pred --cCcceEEEEEC
Confidence 58999998865
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-21 Score=171.42 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEE
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTY 164 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v 164 (280)
...++++++++++... .++++++ |+||++++.++ +.+++.+||+|+++.++|.. +...++..|++++.+
T Consensus 57 ~~~~l~~~la~~~~~~-----~~~~v~~--~~gg~~al~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~ 127 (393)
T 3kgw_A 57 IMEEIKQGIQYVFQTR-----NPLTLVV--SGSGHCAMETA--LFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQM 127 (393)
T ss_dssp HHHHHHHHHHHHHTCC-----CSEEEEE--SCCTTTHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCC-----CCcEEEE--eCCcHHHHHHH--HHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEE
Confidence 3467888888886432 1235766 99999999999 77778999999999888742 366777899999999
Q ss_pred EeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 165 HYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++ + +++.+|++.+++++.+ +++ ++++++||||||.+++ +++|.++|++||+++|+||+|........
T Consensus 128 ~~-~-~~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~---- 195 (393)
T 3kgw_A 128 IK-K-PGEHYTLQEVEEGLAQHKPV---LLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLGGVPIY---- 195 (393)
T ss_dssp EC-C-TTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTTTSCCC----
T ss_pred eC-C-CCCCCCHHHHHHHHhhCCCc---EEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCccccCcccc----
Confidence 98 3 3457899999999987 555 8888999999999998 66789999999999999999874322110
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. +.....+++.|+||.++ .+.++||+++.
T Consensus 196 ----~-~~~~~d~~~~s~sK~~~-~~~g~g~~~~~ 224 (393)
T 3kgw_A 196 ----M-DQQGIDIMYSSSQKVLN-APPGISLISFN 224 (393)
T ss_dssp ----T-TTTTCCEEEEESSSTTC-CCSSCEEEEEC
T ss_pred ----h-hhcCCCEEEecCccccc-CCCceeEEEEC
Confidence 1 11124577889999774 34458998874
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=167.70 Aligned_cols=170 Identities=15% Similarity=0.031 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeC-CCCCC-hHHHHHHcCCeeeE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQ-PTYGN-HPNFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~-P~y~~-~~~~~~~~G~~~~~ 163 (280)
.+..++|+++++++. . +..++++++ |+||++|+.++ +.+++.+||+|++++ +.|+. +...+...|++++.
T Consensus 37 ~~~~~l~~~la~~~g-~---~~~~~~v~~--~~g~t~a~~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~ 108 (366)
T 1m32_A 37 GVVEQIRQQLTALAT-A---SEGYTSVLL--QGSGSYAVEAV--LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHA 108 (366)
T ss_dssp TTHHHHHHHHHHHHC-S---SSSEEEEEE--ESCHHHHHHHH--HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhC-C---CCcCcEEEE--ecChHHHHHHH--HHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEE
Confidence 678999999999974 2 112356777 99999999999 777778999988776 55543 56677788999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
+++ + +++.+|++.+++++.+++ +..++++++|+||||.+++ +++|.++|++||+++|+||+|.......
T Consensus 109 v~~-~-~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~----- 177 (366)
T 1m32_A 109 YDC-G-EVARPDVQAIDAILNADP-TISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIPM----- 177 (366)
T ss_dssp EEC-C-TTSCCCHHHHHHHHHHCT-TCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSCC-----
T ss_pred EeC-C-CCCCCCHHHHHHHHhcCC-CeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCcCc-----
Confidence 998 3 356689999999998742 2237778999999999998 6688999999999999999998554321
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+ ......++++|+||.++ .+.++||+++..
T Consensus 178 ---~~-~~~~~di~~~s~~K~~~-~~~g~G~~~~~~ 208 (366)
T 1m32_A 178 ---DI-AALHIDYLISSANKCIQ-GVPGFAFVIARE 208 (366)
T ss_dssp ---CT-TTTTCSEEEEESSSTTC-CCSSEEEEEEEH
T ss_pred ---cc-cccCccEEEecCccccc-CCCceEEEEECH
Confidence 11 11124588999999874 234579998763
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-21 Score=169.88 Aligned_cols=168 Identities=11% Similarity=0.023 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh---cCCCEEEEe-CCCCCCh-HHHHHHcCCee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH---YYQHTVYLS-QPTYGNH-PNFFAAAGLAM 161 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~---~~Gd~Vli~-~P~y~~~-~~~~~~~G~~~ 161 (280)
...++++++++++.... ..+++++++ |+|+++++.++ +.++. .+||+|+++ .|.|..+ ...++..|+++
T Consensus 39 ~~~~~~~~l~~~~~~~~--~~~~~~v~~--~~g~t~al~~~--~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~ 112 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAA--ASKSQPFVL--AGSGTLGWDIF--ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQV 112 (385)
T ss_dssp HHHHHHHHHHHHTTCCG--GGTCEEEEE--ESCTTHHHHHH--HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCC--CCCCceEEE--cCchHHHHHHH--HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCce
Confidence 35678899999875432 234578887 99999999999 77776 899999888 4556555 35677889999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC--CceeEEcccCCCcccCc
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK--RLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~--~~~ii~De~y~~~~~~~ 238 (280)
+.++.. ++++.+|++.+++++++ +++ +|++++|+||||.+++ +++|+++|+++ |+++|+|++|.......
T Consensus 113 ~~v~~~-~~~~~~d~~~l~~~l~~~~~~---~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~~~ 185 (385)
T 2bkw_A 113 DVVRPL-KIGESVPLELITEKLSQNSYG---AVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCEEF 185 (385)
T ss_dssp EEECCS-STTSCCCHHHHHHHHHHSCCS---EEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTSCC
T ss_pred EEEecC-CCCCCCCHHHHHHHHhcCCCC---EEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCccc
Confidence 999872 34567899999999986 444 7888999999999998 55788999999 99999999997432210
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccc-cccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTM-GLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RvG~~v~~ 278 (280)
.+.+. ...+++.|+||.+ +.+|+ ||+++.
T Consensus 186 --------~~~~~-~~d~~~~s~~K~~~~~~G~--G~~~~~ 215 (385)
T 2bkw_A 186 --------EFDEW-GVDFALTASQKAIGAPAGL--SISLCS 215 (385)
T ss_dssp --------CTTTT-TCSEEEEESSSTTCCCSCE--EEEEEC
T ss_pred --------ccccc-CceEEEecCccccccCCcc--eEEEEc
Confidence 11111 2457889999966 45675 998875
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=168.31 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=129.5
Q ss_pred CCCCCC--CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcC
Q 023599 82 YLPITG--LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAG 158 (280)
Q Consensus 82 y~~~~G--~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G 158 (280)
|.+..| ..+||+++++++.. +++++ |+||++|+.++ +.++ +.+||+|+++.|+|..+...++..|
T Consensus 26 ~~~~~g~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~g 93 (394)
T 1o69_A 26 YIAPLGEFVNRFEQSVKDYSKS--------ENALA--LNSATAALHLA--LRVAGVKQDDIVLASSFTFIASVAPICYLK 93 (394)
T ss_dssp TTSCTTHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEEEEESSSCGGGTHHHHHTT
T ss_pred CccCCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcC
Confidence 666668 89999999999732 56777 99999999999 7777 7899999999999999999999999
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccC
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMN 237 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~ 237 (280)
++++.+++ + +++.+|++.+++++.+...+..+|+++ ||||... ++++|.++|+++|+++|+|++|. .+.+.
T Consensus 94 ~~~~~v~~-~-~~~~~d~~~l~~~i~~~~~~~~~v~~~---~~~G~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~ 165 (394)
T 1o69_A 94 AKPVFIDC-D-ETYNIDVDLLKLAIKECEKKPKALILT---HLYGNAA---KMDEIVEICKENDIVLIEDAAEALGSFYK 165 (394)
T ss_dssp CEEEEECB-C-TTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCCC---CHHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred CEEEEEEe-C-CCCCcCHHHHHHHHhcccCCceEEEEE---CCCCChh---hHHHHHHHHHHcCCEEEEECcCcccceeC
Confidence 99999998 3 567899999999998631112266654 3899654 57788899999999999999998 55553
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.. . +..... +.+.||||..+++|.|+||+++.
T Consensus 166 ~~-~------~~~~~~--~~~~s~s~~K~l~~~~~G~~~~~ 197 (394)
T 1o69_A 166 NK-A------LGTFGE--FGVYSYNGNKIITTSGGGMLIGK 197 (394)
T ss_dssp TE-E------TTSSSS--EEEEECCTTSSSCCSSCEEEEES
T ss_pred Cc-c------cccccC--cEEEEEeCCccCCCCCceEEEEC
Confidence 21 1 111112 55677765555668899999874
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=171.65 Aligned_cols=165 Identities=9% Similarity=0.017 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEE
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTY 164 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v 164 (280)
...++++++++++.. .++++++ .++|+++++.++ +.+++.+||+|++++|+|.. +...++..|++++.+
T Consensus 45 ~~~~l~~~la~~~g~------~~~~~~~-~~~s~t~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v 115 (416)
T 3isl_A 45 IMNETMEMLRELFQT------KNRWAYP-IDGTSRAGIEAV--LASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHML 115 (416)
T ss_dssp HHHHHHHHHHHHTTC------CCSEEEE-EESCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCC------CCCcEEE-ecCcHHHHHHHH--HHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEE
Confidence 356788888888532 2244441 288999999999 77778999999999999986 677788899999999
Q ss_pred EeecCCCCCcCHHHHHHHHh-cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 165 HYYDPKTNGLDFQGMLQDLG-AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~-~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++ + .++.+|++.+++++. ++++ +|++++|+||||.+++ +++|.++|++||+++|+|++|........
T Consensus 116 ~~-~-~~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~~---- 183 (416)
T 3isl_A 116 EC-E-WGTVFDPEDIIREIKKVKPK---IVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGCEVK---- 183 (416)
T ss_dssp EC-C-TTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTSCCC----
T ss_pred ec-C-CCCCCCHHHHHHHHhhCCCc---EEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCCCcc----
Confidence 98 3 345789999999998 4554 8888999999999998 66789999999999999999864433210
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ ......+++.|++|.++ .+.++||+++.
T Consensus 184 ----~-~~~~~d~~~~s~~K~l~-g~~g~g~~~~~ 212 (416)
T 3isl_A 184 ----V-DEWKIDAAIGGTQKCLS-VPSGMAPITYN 212 (416)
T ss_dssp ----T-TTTTCSEEECCSSSTTC-CCSSEEEEEEC
T ss_pred ----h-hhcCCCEEEecCccccC-CCCCeEEEEEC
Confidence 1 11124578999999754 34568998864
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-21 Score=171.41 Aligned_cols=163 Identities=10% Similarity=0.011 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHhCCCCccccCCC-eEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENR-VSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTY 164 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~-i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v 164 (280)
..++++.+++++... .++ +++ ++||++++.++ +.+++.+||+|+++.|+|.. +...++..|++++.+
T Consensus 48 ~~~~~~~la~~~~~~------~~~~v~~--~~sgt~al~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v 117 (411)
T 3nnk_A 48 MNEVMALYRGVFRTE------NRWTMLV--DGTSRAGIEAI--LVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTI 117 (411)
T ss_dssp HHHHHHHHHHHHTCC------CSEEEEE--ESCHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCCC------CCcEEEE--CCCcHHHHHHH--HHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEE
Confidence 467788888886432 233 555 88999999999 77778999999999999976 888888999999999
Q ss_pred EeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 165 HYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
+. ++++.+|++.+++++.+ +++ +|++++|+||||.+.+ +++|.++|++||+++|+|+++.......
T Consensus 118 ~~--~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~----- 184 (411)
T 3nnk_A 118 EV--PWGEVFTPDQVEDAVKRIRPR---LLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGNPL----- 184 (411)
T ss_dssp EC--CTTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBCC-----
T ss_pred ec--CCCCCCCHHHHHHHHhhCCCe---EEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCccc-----
Confidence 98 44567899999999986 555 8888999999999988 6678899999999999999976433211
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+ ......+++.|++|.++ .+.++||+++.
T Consensus 185 ---~~-~~~~~d~~~~s~~K~l~-~~~g~g~~~~~ 214 (411)
T 3nnk_A 185 ---ET-DVWGLDAVSAGMQKCLG-GPSGTSPITLS 214 (411)
T ss_dssp ---CT-TTTTCSEEECCSTTTTC-CCSSEEEEEEC
T ss_pred ---ch-hccCCcEEEecCccccC-CCCceEEEEEC
Confidence 01 11124588999999854 34578998874
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=168.26 Aligned_cols=163 Identities=11% Similarity=0.067 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH--HHHHHcCCeeeEEEe
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP--NFFAAAGLAMKTYHY 166 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~--~~~~~~G~~~~~v~~ 166 (280)
.++++.+++++... ...+.+++ |+||+++++++ +.+++.+||+|+++.|+|..+. ..+...|++++.++.
T Consensus 55 ~~~~~~la~~~g~~----~~~~~i~~--~~ggt~al~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (376)
T 3f0h_A 55 LENEKFMLEYAKAP----EGSKAVFM--TCSSTGSMEAV--VMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL 126 (376)
T ss_dssp HHHHHHHHHHHTCC----TTCEEEEE--SSCHHHHHHHH--HHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhCCC----CCceEEEE--cCChhHHHHHH--HHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence 44566666664221 11133334 88999999999 7777899999999998776544 346678999999998
Q ss_pred ecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 167 YDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
+.++.+|++.+++.+.++++ ++++++|+||||.+++ +++|+++|+++|+++|+|+++..+.... +
T Consensus 127 --~~~~~~d~~~l~~~~~~~~~---~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~--~----- 191 (376)
T 3f0h_A 127 --EHGKKLTKEKLYEYDNQNFT---GLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADPF--N----- 191 (376)
T ss_dssp --CTTCCCCHHHHHTTTTSCCC---EEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSCC--C-----
T ss_pred --CCCCCCCHHHHHHhhccCce---EEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCccc--c-----
Confidence 34578999999997765544 8888999999999998 7788999999999999999987665421 1
Q ss_pred HhhhcCCeEEEEeccccccc-ccccccceEEEE
Q 023599 247 MFVADGGECLVAQSYSKTMG-LYGERVGALSVV 278 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~-~~G~RvG~~v~~ 278 (280)
+... ...+++.|+||.++ .+| +|++++.
T Consensus 192 -~~~~-~~d~~~~s~~K~l~~~~G--~g~~~~~ 220 (376)
T 3f0h_A 192 -MNEC-GADVMITGSQKVLACPPG--ISVIVLA 220 (376)
T ss_dssp -HHHH-TCSEEEEETTTTTCCCSS--CEEEEEC
T ss_pred -cccc-CccEEEecCcccccCCCc--eEEEEEC
Confidence 1111 13477999999998 566 5666553
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-21 Score=167.35 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeeeE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~ 163 (280)
.+..++|+++++++... ..++++++ |+|+++|+.++ +..++. |+|++++|+|..+ ...++..|++++.
T Consensus 33 ~~~~~l~~~la~~~g~~----~~~~~v~~--t~g~t~a~~~~--~~~~~~--d~vl~~~~~~~~~~~~~~~~~~g~~~~~ 102 (353)
T 2yrr_A 33 RVNRAIQERLAALFDPG----EGALVAAL--AGSGSLGMEAG--LANLDR--GPVLVLVNGAFSQRVAEMAALHGLDPEV 102 (353)
T ss_dssp HHHHHHHHHHHHHHCCC----TTCEEEEE--SSCHHHHHHHH--HHTCSC--CCEEEEECSHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHhCCC----CCCceEEE--cCCcHHHHHHH--HHHhcC--CcEEEEcCCCchHHHHHHHHHcCCceEE
Confidence 45788999999997322 12467777 99999999999 666554 8999999988764 4556778999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
++. + +++.+|++.+++.+.+ +++ ++++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 103 v~~-~-~~~~~d~~~l~~~l~~~~~~---~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~~~~~~----- 169 (353)
T 2yrr_A 103 LDF-P-PGEPVDPEAVARALKRRRYR---MVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTTLGMLP----- 169 (353)
T ss_dssp EEC-C-TTSCCCHHHHHHHHHHSCCS---EEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC-----
T ss_pred EeC-C-CCCCCCHHHHHHHHHhCCCC---EEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCccccccc-----
Confidence 998 3 3467999999999987 544 7888999999999998 557789999999999999999633221
Q ss_pred hHHHHhhhcCCeEEEEecccccc-cccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTM-GLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RvG~~v~~ 278 (280)
..+..+ + ..+++.|++|.+ +.+| +||+++.
T Consensus 170 ~~~~~~---~-~d~~~~s~~K~~~~~~g--~G~~~~~ 200 (353)
T 2yrr_A 170 FSMRAM---G-VDYAFTGSQKCLSAPPG--LAPIAAS 200 (353)
T ss_dssp CCHHHH---T-CSEEECCTTSTTCCCSS--CEEEEEC
T ss_pred cccccc---C-ceEEEecCcccccCCCc--eEEEEEC
Confidence 112222 2 236688999965 5456 7999875
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=165.34 Aligned_cols=220 Identities=10% Similarity=-0.045 Sum_probs=134.9
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCC-CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSA-DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
+...+|++.+.+.+.-++ .++..+++..+.+...... ...|. .....++++.+++++. ..+++|++ |+|
T Consensus 42 g~~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~------~~~~~v~~--~~g 111 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMFGGIT-HAPAIELCRKLVAMTP------QPLECVFL--ADS 111 (429)
T ss_dssp SCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCCSSEE-CHHHHHHHHHHHHHSC------TTCCEEEE--ESS
T ss_pred CCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccccccC-CHHHHHHHHHHHHhCC------CCCCEEEE--eCC
Confidence 446788887763112222 2334444444444311110 11232 2234567788887752 23588888 999
Q ss_pred chhHHHHHHHHHH-hhc----CCCEEEEeCCCCCChHHHHHHc-C-------------CeeeEEEeec---CCCC-CcCH
Q 023599 120 GSGSLRIGADFLA-KHY----YQHTVYLSQPTYGNHPNFFAAA-G-------------LAMKTYHYYD---PKTN-GLDF 176 (280)
Q Consensus 120 ~~~al~~~~~~~~-~~~----~Gd~Vli~~P~y~~~~~~~~~~-G-------------~~~~~v~~~~---~~~~-~~d~ 176 (280)
|++|++++.+... ... +||+|++.+|+|..+....... | ..+..++... .+.+ ..|+
T Consensus 112 gtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 191 (429)
T 1s0a_A 112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH
Confidence 9999999933221 122 6899999999998765433221 1 1244455411 1123 4799
Q ss_pred HHHHHHHhcCCCCcEEEEecCC--CCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 177 QGMLQDLGAAPSGAIVLLQASG--HNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p--~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
+.+++++.+...+.++|+ ++| |||||. ..+.+++++|+++|++||+++|+||+|.+|..... ... ....+...
T Consensus 192 ~~l~~~l~~~~~~~~~vi-~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~--~~~-~~~~~~~~ 267 (429)
T 1s0a_A 192 VGFARLMAAHRHEIAAVI-IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFA-CEHAEIAP 267 (429)
T ss_dssp HHHHHHHHHHTTTEEEEE-ECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSG-GGGGTCCC
T ss_pred HHHHHHHHhCCCCEEEEE-EeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch--HHH-hhhcCCCC
Confidence 999999875322233444 455 699996 55788899999999999999999999998765321 111 11122233
Q ss_pred eEEEEecccccccccc-cccceEEEE
Q 023599 254 ECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
+++ ||||.++ +| +|+||+++.
T Consensus 268 d~~---t~sK~l~-~G~~~iG~~~~~ 289 (429)
T 1s0a_A 268 DIL---CLGKALT-GGTMTLSATLTT 289 (429)
T ss_dssp SEE---EECGGGG-TSSSCCEEEEEC
T ss_pred CEE---Eeccccc-CCCccceEEEeC
Confidence 443 7999998 68 999999874
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=166.88 Aligned_cols=209 Identities=12% Similarity=0.060 Sum_probs=135.0
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+|+..|...+.-|+ .++..++++.+++. ..... +++.....+|++++++++. .++++++ ++|
T Consensus 53 ~g~~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~--~~~~~-~~~~~~~~~l~~~la~~~~-------~~~~v~~--~~s 119 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGH-AHPHITKAITTAAE--NGVLY-GTPTALEVKFAKMLKEAMP-------ALDKVRF--VNS 119 (434)
T ss_dssp TCCEEEECCGGGTTCSSCB-TCHHHHHHHHHHHH--HCSCC-SSCCHHHHHHHHHHHHHCT-------TCSEEEE--ESS
T ss_pred CCCEEEECCCchhccccCC-CCHHHHHHHHHHHH--hCcCC-CCCCHHHHHHHHHHHHhCC-------CCCEEEE--eCc
Confidence 4567899988864222232 23444444444554 22222 3445566788888888752 2378888 999
Q ss_pred chhHHHHHHHHHHhhc--CCCEEEEeCCCCCChHHHHHHcCC--------------------eeeEEEeecCCCCCcCHH
Q 023599 120 GSGSLRIGADFLAKHY--YQHTVYLSQPTYGNHPNFFAAAGL--------------------AMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~--~Gd~Vli~~P~y~~~~~~~~~~G~--------------------~~~~v~~~~~~~~~~d~~ 177 (280)
|++|++++ +..... ++++|++.+|+|..+.......+. .+..+|. .|++
T Consensus 120 Gsea~~~a--i~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~ 190 (434)
T 3l44_A 120 GTEAVMTT--IRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF-------NNVE 190 (434)
T ss_dssp HHHHHHHH--HHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT-------TCHH
T ss_pred hHHHHHHH--HHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc-------ccHH
Confidence 99999999 544333 679999999999876543332221 1111111 1899
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
.+++++.+.+.+.++|+++.++|++|.+. +++.+++|.++|++||+++|+||+|.+| .... ... ....+...+
T Consensus 191 ~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~--~~~-~~~~~~~~d-- 264 (434)
T 3l44_A 191 TLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY--GGA-QDLLGVTPD-- 264 (434)
T ss_dssp HHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS--SCH-HHHHTCCCS--
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc--cHH-HHHcCCCCC--
Confidence 99999875422334555555555666655 8889999999999999999999999998 4221 111 112222223
Q ss_pred EEecccccccccccccceEEEE
Q 023599 257 VAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.+|||.++ +|+|+||+++.
T Consensus 265 -i~t~sK~~~-~G~~iG~~~~~ 284 (434)
T 3l44_A 265 -LTALGKVIG-GGLPIGAYGGK 284 (434)
T ss_dssp -EEEEEGGGG-TTSSCEEEEEC
T ss_pred -eeehhhhhc-CCcCeeeEEEc
Confidence 458999998 89999999764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-21 Score=170.30 Aligned_cols=166 Identities=18% Similarity=0.156 Sum_probs=131.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCC
Q 023599 81 EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGL 159 (280)
Q Consensus 81 ~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~ 159 (280)
.|.+..+..+||+++++++.. +++++ ++||++|+.++ +.++ +.+||+|+++.|+|..+...++..|+
T Consensus 30 ~~~~~~~~~~l~~~la~~~~~--------~~~~~--~~sGt~al~~a--l~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~ 97 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVGA--------KYCIS--CANGTDALQIV--QMALGVGPGDEVITPGFTYVATAETVALLGA 97 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTC
T ss_pred CccCChHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHcCC
Confidence 466777889999999999732 35566 99999999999 7777 78999999999999999999999999
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc-cCc
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV-MNM 238 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~-~~~ 238 (280)
+++.+++ +++++.+|++.+++++++++ ++|+ |+||||...+ +++|.++|+++|+++|+|++|.... ++.
T Consensus 98 ~~~~~~~-~~~~~~~d~~~l~~~i~~~~---~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~~~ 167 (367)
T 3nyt_A 98 KPVYVDI-DPRTYNLDPQLLEAAITPRT---KAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASYKG 167 (367)
T ss_dssp EEEEECB-CTTTCSBCGGGTGGGCCTTE---EEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEETT
T ss_pred EEEEEec-CCccCCcCHHHHHHhcCcCC---cEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeECC
Confidence 9999998 56668899999999986543 3555 7899997665 6677889999999999999997543 331
Q ss_pred CCChhHHHHhhhcCCeEEEEecc--cccccccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSY--SKTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~RvG~~v~~ 278 (280)
. . +...+ -+.+.|| +|.++.+|. .||++..
T Consensus 168 ~-~------~~~~~--di~~~Sf~~~K~l~~~g~-gg~~~~~ 199 (367)
T 3nyt_A 168 K-R------SCNLS--TVACTSFFPSAPLGCYGD-GGAIFTN 199 (367)
T ss_dssp E-E------TTSSS--SEEEEECCTTSSSCCSSC-CEEEEES
T ss_pred e-e------ccCCC--CEEEEECCCCCcCCCcCc-eeEEEeC
Confidence 1 1 11111 3678887 899986687 8888763
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=170.75 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=128.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh----hcCCC-----EEEEeCCCCCChHHHHH
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK----HYYQH-----TVYLSQPTYGNHPNFFA 155 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~----~~~Gd-----~Vli~~P~y~~~~~~~~ 155 (280)
.+|..++++++++++....+.. ..+++ |+||++++.++ +... ..+|| +|+++.|.|+.+...++
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~---~~~~~--~~ggt~a~~~a--l~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~ 174 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMD---AITLE--PAAGAHGELTG--ILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS 174 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCS---EEECC--CSSHHHHHHHH--HHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHCCC---ceeec--ChHHHHHHHHH--HHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH
Confidence 5566677777777754432221 12333 89999999875 3322 35887 99999999999999999
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcc
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV 235 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~ 235 (280)
..|++++.++. + +++.+|++.|++++.+++ .+|++++| ||||.+. +++++|+++|+++|+++|+|++|....
T Consensus 175 ~~G~~vv~v~~-~-~~~~~d~~~L~~~i~~~t---~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~ 246 (474)
T 1wyu_B 175 MAGYQVREIPS-G-PEGEVDLEALKRELGPHV---AALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAI 246 (474)
T ss_dssp HTTCEEEEECB-C-TTSSBCHHHHHHHCSTTE---EEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGT
T ss_pred HCCCEEEEecC-C-CCCCcCHHHHHHhhCCCc---eEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhh
Confidence 99999999998 3 457899999999997543 47888888 6899873 468899999999999999999997766
Q ss_pred cCcCCChhHHHHhhhcCCeEEEEeccccccccc-c---cccceEEEEc
Q 023599 236 MNMDADALPVRMFVADGGECLVAQSYSKTMGLY-G---ERVGALSVVR 279 (280)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G---~RvG~~v~~~ 279 (280)
.+. .. .. +.+ ..+++.|++|+|+.| | .|+||+++..
T Consensus 247 ~g~-~~---~~---~~g-~di~~~s~~K~~~~p~g~gG~~~G~~~~~~ 286 (474)
T 1wyu_B 247 MGW-AR---PG---DMG-FDVVHLNLHKTFTVPHGGGGPGSGPVGVKA 286 (474)
T ss_dssp TTT-CC---HH---HHT-CSEEECCTTTTTCCCCTTSCCCCCCEEECG
T ss_pred ccC-CC---cc---cCC-CcEEEEeCccccccCCCCCCCCeEEEEEcH
Confidence 531 11 11 122 346788999999877 5 5999998864
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=164.72 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeC-CCCCChHHHH----------H
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQ-PTYGNHPNFF----------A 155 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~-P~y~~~~~~~----------~ 155 (280)
+...+++.+++++.... ...+++ +++|++|+.++ +.+++.+||+|+++. |.|..+...+ +
T Consensus 66 ~~~~l~~~la~~~g~~~----~~~~i~---~~sGt~Ai~~a--l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~ 136 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEA----GLVRPQ---IISGTHAISTA--LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFK 136 (431)
T ss_dssp HHHHHHHHHHHHTTCSE----ECCBTT---SCSHHHHHHHH--HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSG
T ss_pred hHHHHHHHHHHHhCCCc----ccccce---eeCHHHHHHHH--HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHH
Confidence 34567777777643221 112333 34779999999 888899999999998 9999988655 3
Q ss_pred HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEec-CCCCCCCCCCCHHHHHHHHHHHHh--CCceeEEcccCC
Q 023599 156 AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQA-SGHNPTGIDPTAQQWEQIRQLMRL--KRLLPFFDCAYQ 232 (280)
Q Consensus 156 ~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~-~p~NPTG~~~~~~~l~~i~~~~~~--~~~~ii~De~y~ 232 (280)
..|++++.++. + +++.+|++.+++++++++ ++|+++ +||||||..++.+++++|+++|++ +|+++|+|++|.
T Consensus 137 ~~G~~~~~v~~-~-~~~~~d~e~l~~~l~~~t---k~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~ 211 (431)
T 3ht4_A 137 EYNIGYNAVPL-T-EGGLVDFEAVAAAIHSNT---KMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYG 211 (431)
T ss_dssp GGTCEEEECCB-C-TTSSBCHHHHHHHCCTTE---EEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred HcCCEEEEeCC-C-CCCCcCHHHHHhhcCCCC---eEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCCh
Confidence 47999999998 3 347899999999997543 366666 699999999999999999999999 999999999999
Q ss_pred CcccCcCCChhHHHHhhhcCCeEEEEecccccccc-cccccceEEEE
Q 023599 233 GFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL-YGERVGALSVV 278 (280)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RvG~~v~~ 278 (280)
.+.+... + . ..+ .-++++|+||.+|. .+...||+++.
T Consensus 212 ~~~~~~~-~----~---~~g-~Di~~~S~sK~lgg~~~~~GG~v~~~ 249 (431)
T 3ht4_A 212 EFIEEQE-P----C---HVG-ADLMAGSLIKNPGGGIVKTGGYIVGK 249 (431)
T ss_dssp TTSSSCC-G----G---GTT-CSEEEEETTSGGGTTTCSSCEEEEEC
T ss_pred hhccCCC-c----c---ccC-CeEEEcCccccCCCCCCCceEEEEec
Confidence 9986421 1 1 111 23889999999753 12334998864
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=163.08 Aligned_cols=219 Identities=13% Similarity=-0.018 Sum_probs=134.6
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.|...+.-|+ .++..++++.+.+. .. . +....+..++++++++++...... ..+ +++ |+|
T Consensus 47 ~g~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~--~~-~--~~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~--~~g 115 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGY-GRKELAEAAYKQLQ--TL-S--YFPMSQSHEPAIKLAEKLNEWLGG--EYV-IFF--SNS 115 (452)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHT--TC-C--CCCTTSEEHHHHHHHHHHHHHHTS--CEE-EEE--ESS
T ss_pred CCCEEEECCcchhhccCCC-CCHHHHHHHHHHHH--hc-C--CcccccCCHHHHHHHHHHHHhCCC--Cce-EEE--eCc
Confidence 4567899998853233343 23444444445444 21 1 122234444555555554332111 123 666 999
Q ss_pred chhHHHHHHHHHHhh-----c---CCCEEEEeCCCCCChHHHHHHcCCe-------------eeEEEeecCCCCCc-C--
Q 023599 120 GSGSLRIGADFLAKH-----Y---YQHTVYLSQPTYGNHPNFFAAAGLA-------------MKTYHYYDPKTNGL-D-- 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~-----~---~Gd~Vli~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~~~~~~-d-- 175 (280)
|++|++.+ +.... . ++++|++.+|+|.++.......+.. +..++..+...+.. |
T Consensus 116 gseA~~~a--l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (452)
T 3n5m_A 116 GSEANETA--FKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERE 193 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTS
T ss_pred hHHHHHHH--HHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCch
Confidence 99999999 55444 4 7799999999998876555544332 22333200000001 2
Q ss_pred -------HHHHHHHHh-cCCCCcEEEEecCC-CCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 176 -------FQGMLQDLG-AAPSGAIVLLQASG-HNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 176 -------~~~l~~~~~-~~~~~~~~v~~~~p-~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
++.|++++. ..+.+.++++++.+ +| ||.++ +.+.+++|.++|++||+++|+||+|.+|..... ...
T Consensus 194 ~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~~- 269 (452)
T 3n5m_A 194 NIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK--AFG- 269 (452)
T ss_dssp CGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSG-
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc--cch-
Confidence 899999987 22233456666666 89 99766 888899999999999999999999998865321 111
Q ss_pred HHhhhcCCeEEEEecccccccccc-cccceEEEEc
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYG-ERVGALSVVR 279 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~~ 279 (280)
....+...+ +.+|||.++. | +|+||+++..
T Consensus 270 ~~~~~~~~d---i~t~sK~l~~-G~~~ig~~~~~~ 300 (452)
T 3n5m_A 270 FMNYDVKPD---IITMAKGITS-AYLPLSATAVKR 300 (452)
T ss_dssp GGGTTCCCS---EEEECGGGGT-TSSCCEEEEEEH
T ss_pred hhhcCCCCC---EEeecccccC-CCcceEEEEECH
Confidence 111122223 3479999985 9 9999998753
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=162.27 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=130.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCC--CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEY--LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+...+||+.+.+.+.-|+ .++..++++.+.+. .. .+.| .+..-..+|++.+++++ + .+++++ |
T Consensus 34 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~--~~-~~~~~~~~~~~~~~l~~~la~~~----~----~~~v~~--~ 99 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGY-NHAKFNAKIKAQVD--KL-LHTSNLYYNENIAAAAKNLAKAS----A----LERVFF--T 99 (395)
T ss_dssp TCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHT--TC-SCCCTTSBCHHHHHHHHHHHHHH----T----CSEEEE--E
T ss_pred CCCEEEECCCcHHhccCCC-CCHHHHHHHHHHHH--hc-cccccccCCHHHHHHHHHHHHhc----C----CCeEEE--e
Confidence 3467899998864233332 23344444444443 11 1111 12222344555555553 1 378888 9
Q ss_pred ccchhHHHHHHHHHHhh-------cCCCEEEEeCCCCCChHHHHHHcC-------------CeeeEEEeecCCCCCcCHH
Q 023599 118 LSGSGSLRIGADFLAKH-------YYQHTVYLSQPTYGNHPNFFAAAG-------------LAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~-------~~Gd~Vli~~P~y~~~~~~~~~~G-------------~~~~~v~~~~~~~~~~d~~ 177 (280)
+||++|+..+ +.... .++|+|++.+|+|.++.......+ ..+..++. .|++
T Consensus 100 ~gg~ea~~~a--l~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~ 170 (395)
T 3nx3_A 100 NSGTESIEGA--MKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDIS 170 (395)
T ss_dssp SSHHHHHHHH--HHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHH
T ss_pred CCHHHHHHHH--HHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHH
Confidence 9999999998 44333 457999999999987754443332 23333332 2789
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
.++++++++ .+++++..++|++|.. ++.+++++|.++|++||+++|+||+|.+|..... ... ....+. ..
T Consensus 171 ~l~~~l~~~---~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~-~~~~~~---~~ 241 (395)
T 3nx3_A 171 SVEKLVNEK---TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK--FFA-YEHAQI---LP 241 (395)
T ss_dssp HHHTTCCTT---EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSG-GGGGTC---CC
T ss_pred HHHHhccCC---eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc--chh-HHhcCC---CC
Confidence 999988643 2355555566777766 7888899999999999999999999998865321 111 111122 22
Q ss_pred EEecccccccccccccceEEEEc
Q 023599 257 VAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+.||||.++ .|+|+||+++..
T Consensus 242 d~~t~sK~~~-~G~~~G~~~~~~ 263 (395)
T 3nx3_A 242 DIMTSAKALG-CGLSVGAFVINQ 263 (395)
T ss_dssp SEEEECGGGT-TTSCCEEEEECH
T ss_pred CEEEeccccc-CCCceEEEEEch
Confidence 2457999998 599999998753
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=164.06 Aligned_cols=211 Identities=13% Similarity=0.060 Sum_probs=131.6
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.|.+.+.-|+ .++..++++.+.+. ......| +.....+|++.+++++ . .++++++ ++|
T Consensus 50 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~--~~~~~~~-~~~~~~~la~~l~~~~----~---~~~~v~~--~~g 116 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGH-AHPEVIEALKVAME--KGTSFGA-PCALENVLAEMVNDAV----P---SIEMVRF--VNS 116 (427)
T ss_dssp TSCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHT--TCSCCSS-CCHHHHHHHHHHHHHS----T---TCSEEEE--ESS
T ss_pred CCCEEEECCCchhhhccCC-CCHHHHHHHHHHHH--hCCCcCC-CCHHHHHHHHHHHHhC----C---CCCEEEE--eCC
Confidence 4567899998874222332 24444444444444 2211222 2222334445555443 1 2478888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-CCe-------------------eeEEEeecCCCCCcCHHHH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-GLA-------------------MKTYHYYDPKTNGLDFQGM 179 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G~~-------------------~~~v~~~~~~~~~~d~~~l 179 (280)
|++|++++..+......+++|++.+|+|..+....... |.. +..++. -|++.+
T Consensus 117 gsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 189 (427)
T 3fq8_A 117 GTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAV 189 (427)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHH
Confidence 99999999432222234589999999997643322211 111 222222 189999
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCCCCCC-HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 180 LQDLGAAPSGAIVLLQASGHNPTGIDPT-AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~p~NPTG~~~~-~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
++++++.+.+.++++++.++|++|.+.+ .+.+++|.++|++||+++|+||+|.+| ... .... ....+...+ +
T Consensus 190 e~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g--~~~~-~~~~~~~~d---i 262 (427)
T 3fq8_A 190 KALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA--YGGV-QEKFGVTPD---L 262 (427)
T ss_dssp HHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB--TTHH-HHHTTCCCS---E
T ss_pred HHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC--cchh-hHhcCCCCC---h
Confidence 9999875445567777777788887776 555999999999999999999999988 432 1111 112122223 5
Q ss_pred ecccccccccccccceEEEE
Q 023599 259 QSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~ 278 (280)
.||||.++ +|+|+||+++.
T Consensus 263 ~t~sK~~~-~G~~~G~~~~~ 281 (427)
T 3fq8_A 263 TTLGKIIG-GGLPVGAYGGK 281 (427)
T ss_dssp EEECGGGG-TTSSCEEEEEC
T ss_pred hhhhhhhh-CCcceEEEEEc
Confidence 68999999 89999999764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=165.13 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=128.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEee--cccchhHHHHHHHHHHhhcCCCEEEEeC-CCCCChHHHH-------
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ--CLSGSGSLRIGADFLAKHYYQHTVYLSQ-PTYGNHPNFF------- 154 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~--t~g~~~al~~~~~~~~~~~~Gd~Vli~~-P~y~~~~~~~------- 154 (280)
..|...|++.+|+++.. +.. ++. ++||++|+.++ +.+++++||+|++++ |.|..+..++
T Consensus 72 ~~~~~~Le~~lA~l~g~--------e~a-lv~p~~~sGt~Ai~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~ 140 (427)
T 3i16_A 72 DIGRDSLDAVYARVFNT--------ESA-LVRPHFVNGTHALGAA--LFGNLRPGNTMLSVCGEPYDTLHDVIGITENSN 140 (427)
T ss_dssp CHHHHHHHHHHHHHHTC--------SEE-EEETTCCSHHHHHHHH--HHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCS
T ss_pred HHHHHHHHHHHHHHhCC--------cce-EEeCCCccHHHHHHHH--HHHHhCCCCEEEEeCCCccHHHHHHHhccccch
Confidence 34678899999998632 222 222 67889999999 888899999999999 9999887544
Q ss_pred ----HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHh--CCce
Q 023599 155 ----AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS----GHNPTGIDPTAQQWEQIRQLMRL--KRLL 224 (280)
Q Consensus 155 ----~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~----p~NPTG~~~~~~~l~~i~~~~~~--~~~~ 224 (280)
+..|++++.++. + +++.+|++.+++++++. .+.++|++++ |+|||| +..++++|+++|++ +|++
T Consensus 141 ~~~l~~~G~~~~~v~~-~-~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg---~i~dl~~i~~la~~~~~g~~ 214 (427)
T 3i16_A 141 MGSLKEFGINYKQVDL-K-EDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRAL---LIEDIKSIVDCVKNIRKDII 214 (427)
T ss_dssp SCCTGGGTCEEEECCC-C-TTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCC---CHHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHcCCEEEEecC-c-cCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcc---cHHHHHHHHHHHHHhCCCCE
Confidence 567999999987 3 34578999999999832 1234777888 999997 45789999999999 9999
Q ss_pred eEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 225 PFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 225 ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
+++|++|..+.+... + . +.+ .-++++|+||++|.+| .+.||++..
T Consensus 215 livD~a~~~~~~~~~-p----~---~~g-aDiv~~S~sK~lgg~g~~~gG~i~~~ 260 (427)
T 3i16_A 215 CFVDNCYGEFMDTKE-P----T---DVG-ADLIAGSLIKNIGGGIAPTGGYLAGT 260 (427)
T ss_dssp EEEECTTTTTSSSSC-G----G---GGT-CSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred EEEECCCccccccCC-c----c---ccC-CeEEEecCcccCCCCCCceEEEEEEC
Confidence 999999998875321 1 1 112 2478999999998666 677888764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=164.30 Aligned_cols=166 Identities=11% Similarity=0.144 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEee-cccchhHHHHHHHHHHhhcCCCEEEEeC-CCCCChHHHH---------
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQ-CLSGSGSLRIGADFLAKHYYQHTVYLSQ-PTYGNHPNFF--------- 154 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~-t~g~~~al~~~~~~~~~~~~Gd~Vli~~-P~y~~~~~~~--------- 154 (280)
.|...|++.+|+++.. +..+++. ++||++|+.++ +.+++++||+|+++. |.|..+...+
T Consensus 59 ~~~~~Le~~lA~l~g~--------e~alv~p~~~sGt~Ai~~a--l~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~ 128 (409)
T 3jzl_A 59 EGRDTLERVYATVFKT--------EAALVRPQIISGTHAISTV--LFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGS 128 (409)
T ss_dssp HHHHHHHHHHHHHHTC--------SEEEEETTSCSHHHHHHHH--HHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSC
T ss_pred hHHHHHHHHHHHHhCC--------CcEEEECCCccHHHHHHHH--HHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhH
Confidence 3678899999998632 3333221 68889999999 888899999999998 9999988544
Q ss_pred -HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHh--CCceeEE
Q 023599 155 -AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS----GHNPTGIDPTAQQWEQIRQLMRL--KRLLPFF 227 (280)
Q Consensus 155 -~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~----p~NPTG~~~~~~~l~~i~~~~~~--~~~~ii~ 227 (280)
+..|++++.++. + +++.+|++.+++++++++ ++|++++ |+||||. ..++++|+++|++ +++++++
T Consensus 129 l~~~G~~~~~v~~-~-~~g~~d~e~l~~ai~~~t---klV~i~~s~g~p~nptg~---v~~l~~I~~la~~~~~~~~liv 200 (409)
T 3jzl_A 129 LKDFHIGYSSVPL-L-ENGDVDFPRIAKKMTPKT---KMIGIQRSRGYADRPSFT---IEKIKEMIVFVKNINPEVIVFV 200 (409)
T ss_dssp TGGGTCEEEECCC-C-TTSCCCHHHHHHHCCTTE---EEEEEECSCTTSSSCCCC---HHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHcCCEEEEeCC-C-CCCCcCHHHHHHhccCCC---eEEEEECCCCCCCCCcCc---cccHHHHHHHHHhhCCCCEEEE
Confidence 567999999988 3 356799999999997644 4888888 9999985 5689999999999 9999999
Q ss_pred cccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 228 DCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 228 De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
|++|..+.+... + . +.+ .-++++|+||.++.+| .+.||++..
T Consensus 201 D~a~~~~~~~~~-p----~---~~g-~Div~~S~sK~lgg~~~~~GG~v~~~ 243 (409)
T 3jzl_A 201 DNCYGEFVEYQE-P----P---EVG-ADIIAGSLIKNPGGGLAKTGGYIAGK 243 (409)
T ss_dssp ECTTCTTTSSCC-S----G---GGT-CSEEEEETTSGGGTTTCSSCEEEEEC
T ss_pred eCCcccccccCC-c----c---ccC-CeEEEECccccCCccCCceEEEEEeC
Confidence 999998875321 1 1 111 2478999999998666 346887754
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-20 Score=165.12 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=128.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCC
Q 023599 81 EYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGL 159 (280)
Q Consensus 81 ~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~ 159 (280)
.|.+..+..+||+++++++.. +++++ ++||++|+.++ +.++ +.+||+|+++.|+|..+...++..|+
T Consensus 31 ~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sgt~al~~~--l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~ 98 (373)
T 3frk_A 31 WFILGDEDKKFEQEFADYCNV--------NYCIG--CGNGLDALHLI--LKGYDIGFGDEVIVPSNTFIATALAVSYTGA 98 (373)
T ss_dssp CCSSSHHHHHHHHHHHHHHTS--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEEEEETTSCTHHHHHHHHHSC
T ss_pred CccCCchHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHcCCCCcCEEEECCCCcHHHHHHHHHcCC
Confidence 366777889999999999732 45666 99999999999 7777 78999999999999999999999999
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc-Cc
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NM 238 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~-~~ 238 (280)
+++.++. +++++.+|++.+++++.+++ .+++ |+||||...+ +++|.++|+++|+++|+|++|..... +.
T Consensus 99 ~~~~~~~-~~~~~~~d~~~l~~~l~~~~---~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~~ 168 (373)
T 3frk_A 99 KPIFVEP-DIRTYNIDPSLIESAITEKT---KAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYKG 168 (373)
T ss_dssp EEEEECE-ETTTTEECGGGTGGGCCTTE---EEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETT
T ss_pred EEEEEec-cccccCcCHHHHHHhcCCCC---eEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEECC
Confidence 9999998 55678899999999886543 3555 6899999766 56778899999999999999986443 21
Q ss_pred CCChhHHHHhhhcCCeEEEEeccc--ccccccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYS--KTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RvG~~v~~ 278 (280)
. .+.... . +.+.||| |.++.+| +.|+++..
T Consensus 169 ~-------~~~~~~-d-~~~~S~~~~K~l~~~g-~gg~~~~~ 200 (373)
T 3frk_A 169 M-------KVGSLG-D-AAGFSFYPAKNLGSLG-DGGAVVTN 200 (373)
T ss_dssp E-------ETTSSS-S-EEEEECCTTSSSCCSS-SCEEEEES
T ss_pred E-------eccccc-c-EEEEeCcCCCccCccc-eeEEEEeC
Confidence 1 111011 2 6678877 8886325 47777653
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=164.89 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=130.5
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCC-CCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSA-DKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
+...+||..+.....-++ .++..++++.+.+.. ... ...| +.....+|++.+++++ + ..+++|++ |+|
T Consensus 42 g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~~~~~-~~~~~~~l~~~la~~~----~--~~~~~v~~--~~g 110 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGK-LDHLFSEM-LSRPVVDLATRLANIT----P--PGLDRALL--LST 110 (433)
T ss_dssp CCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHH-CCCCCTTC-CCHHHHHHHHHHHHHS----C--TTCCEEEE--ESC
T ss_pred CCEEEEcccchhccccCC-CCHHHHHHHHHHHHh-Cccccccc-CCHHHHHHHHHHHHhC----C--CCcCEEEE--eCc
Confidence 456788877763111222 233444444444431 111 1122 1112345666666653 1 12478888 999
Q ss_pred chhHHHHHHHHHHhh--cCCCEEEEeCCCCCChHHHHHHc-C-----------CeeeEEEeecC--CCCC--------cC
Q 023599 120 GSGSLRIGADFLAKH--YYQHTVYLSQPTYGNHPNFFAAA-G-----------LAMKTYHYYDP--KTNG--------LD 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~~~~~~~~~-G-----------~~~~~v~~~~~--~~~~--------~d 175 (280)
|++|++++ +.... ..+++|++.+|+|.++....... + ..+..++.... ..+. +|
T Consensus 111 g~ea~~~a--~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d 188 (433)
T 1zod_A 111 GAESNEAA--IRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAE 188 (433)
T ss_dssp HHHHHHHH--HHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHH
T ss_pred hHHHHHHH--HHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHH
Confidence 99999999 44322 24589999999997765433321 0 12334433111 0111 36
Q ss_pred HHHHHHHHhcCC-CCcEEEEecCC-CCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcC
Q 023599 176 FQGMLQDLGAAP-SGAIVLLQASG-HNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADG 252 (280)
Q Consensus 176 ~~~l~~~~~~~~-~~~~~v~~~~p-~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 252 (280)
++.+++++.+.. ++.++++ ++| +||||. +.+.+++++|.++|++||+++|+||+|.+|..... ...+ ...+..
T Consensus 189 ~~~le~~l~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~--~~~~-~~~~~~ 264 (433)
T 1zod_A 189 LDYAFDLIDRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--MFAC-QRDGVT 264 (433)
T ss_dssp HHHHHHHHHHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTH-HHHTCC
T ss_pred HHHHHHHHHhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch--HhHH-hhcCCC
Confidence 899999887421 2233444 455 588996 57899999999999999999999999998865321 1111 122222
Q ss_pred CeEEEEecccccccccccccceEEEEc
Q 023599 253 GECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 253 ~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+ +.||||.|+. |+|+||+++..
T Consensus 265 ~d---i~s~sK~~~~-G~~ig~~~~~~ 287 (433)
T 1zod_A 265 PD---ILTLSKTLGA-GLPLAAIVTSA 287 (433)
T ss_dssp CS---EEEECHHHHT-TSSCEEEEECH
T ss_pred CC---EEEecccccC-CCCeeEEEEhH
Confidence 34 3489999995 99999998753
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=165.24 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=126.5
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH----HHHHcC
Q 023599 83 LPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN----FFAAAG 158 (280)
Q Consensus 83 ~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~----~~~~~G 158 (280)
.+.....+|++.+++++.. +..++ +++|++|+.++ +.+++.+||+|++++|+|..+.. .++..|
T Consensus 79 ~~~p~~~~le~~lA~l~g~--------~~~v~--~~sG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G 146 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTGA--------LGVLA--LGSGMAAISTA--ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFG 146 (430)
T ss_dssp -CCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence 3445667899999998632 22344 66778999999 77889999999999999988877 566889
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
++++.++. + |++.+++++++++ ++|++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 147 ~~~~~v~~-~------d~~~l~~ai~~~t---~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~ 213 (430)
T 3ri6_A 147 IEVRFVDV-M------DSLAVEHACDETT---KLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE 213 (430)
T ss_dssp CEEEEECT-T------CHHHHHHHCCTTE---EEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC
T ss_pred CEEEEeCC-C------CHHHHHHhhCCCC---eEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 99999987 1 8999999987644 48889999999999986 5677899999999999999998665421
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+ ...+ ..+++.|+||.++.+|..+|.+++
T Consensus 214 --~-------~~~g-~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 214 --A-------KRLG-VDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp --G-------GGGT-CSEEEEECCCEEETTEEECCEEEE
T ss_pred --h-------HHcC-CEEEEECCcccccCCCCceEEEEE
Confidence 1 1222 347899999999988888888776
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=162.80 Aligned_cols=158 Identities=18% Similarity=0.103 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~~~ 162 (280)
...+|++.+++++.. ++.++ +++|++|+.++ +.+++.+||+|+++.|.|..+... ++..|++++
T Consensus 115 ~~~~l~~~lA~l~g~-------~~~v~---~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~ 182 (445)
T 1qgn_A 115 TTVVLEEKISALEGA-------ESTLL---MASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITAT 182 (445)
T ss_dssp HHHHHHHHHHHHHTC-------SEEEE---ESCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred HHHHHHHHHHHHhCC-------CcEEE---eCCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEE
Confidence 345899999998632 13344 55556999999 777889999999999999877664 456799999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. .|++.+++++++++ .++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....... +
T Consensus 183 ~v~~-------~d~~~l~~ai~~~t--v~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~--~- 247 (445)
T 1qgn_A 183 VIDP-------ADVGALELALNQKK--VNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK--A- 247 (445)
T ss_dssp EECS-------SCHHHHHHHHHHSC--EEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--T-
T ss_pred EeCC-------CCHHHHHHHhccCC--CCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--c-
Confidence 8886 18999999998765 138888999999999987 5678899999999999999998664321 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
.+.+ .-+++.|+||.++.+| +|+||+++.
T Consensus 248 ------~~~g-~Div~~S~sK~~gg~gd~~~G~l~~~ 277 (445)
T 1qgn_A 248 ------LALG-ADLVLHSATKFLGGHNDVLAGCISGP 277 (445)
T ss_dssp ------TTTT-CSEEEECTTTTTTCSSSCCCEEEEEC
T ss_pred ------cccC-CEEEEECCcccccccccceEEEEEEC
Confidence 1122 3478999999998665 479998864
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-20 Score=170.77 Aligned_cols=186 Identities=12% Similarity=0.128 Sum_probs=138.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc-----CC---CEEEEeCCCCCChH
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY-----YQ---HTVYLSQPTYGNHP 151 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~-----~G---d~Vli~~P~y~~~~ 151 (280)
.+|....|..++++.+++++....+....++++++ |+||++|+.++ +.++.. +| |+|+++.|+|..+.
T Consensus 97 ~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~--~~ggt~a~~~a--~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~ 172 (497)
T 3mc6_A 97 LHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTT--TSGGTESLLLA--CLSAKMYALHHRGITEPEIIAPVTAHAGFD 172 (497)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEE--ESSHHHHHHHH--HHHHHHHHHHHSCCSSCEEEEETTSCHHHH
T ss_pred CCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEE--cCcHHHHHHHH--HHHHHHHHHhcCCCCCceEEEeCCccHHHH
Confidence 44555667778888887776544333223577887 99999999999 665543 56 89999999999999
Q ss_pred HHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccC
Q 023599 152 NFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAY 231 (280)
Q Consensus 152 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y 231 (280)
..++..|++++.+++ +++++.+|++.|++++.++ .++|++++|+||||.+.+ +++|.++|+++|+++|+|++|
T Consensus 173 ~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~~---~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a~ 245 (497)
T 3mc6_A 173 KAAYYFGMKLRHVEL-DPTTYQVDLGKVKKFINKN---TVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSCL 245 (497)
T ss_dssp HHHHHSCCEEEEECB-CTTTCSBCTTTTGGGCCSS---EEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETTT
T ss_pred HHHHHcCCeEEEEec-CcccCcCCHHHHHHHHhhC---CEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECcc
Confidence 999999999999998 4446789999999998764 358999999999999976 567789999999999999999
Q ss_pred CCcccC----cCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 232 QGFVMN----MDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 232 ~~~~~~----~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+... ......+.... ....-.+++.|++|.++ +|.++||+++.
T Consensus 246 ~~~~~~f~~~~~~~~~~~~~~-~~~g~d~~~~s~~K~l~-~~~~~g~~~~~ 294 (497)
T 3mc6_A 246 GSFIVSFMEKAGYKNLPLLDF-RVPGVTSISCDTHKYGF-APKGSSVIMYR 294 (497)
T ss_dssp THHHHGGGTTTTCCSCCCCST-TSTTCCEEEEETTTTTC-CCSSCEEEECS
T ss_pred hhhhhhhhhhhcccCCccccc-cCCCCcEEEECchhhcC-CCCCceeEEec
Confidence 855321 00000000011 11123466889999874 78999999874
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=164.50 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCee
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAM 161 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~ 161 (280)
.....|++.+|+++.. +++++ ++||++|+.++ +.+++.+||+|+++.|.|......+ +..|+++
T Consensus 82 p~~~~le~~lA~l~g~--------~~~i~--~ssGt~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v 149 (415)
T 2fq6_A 82 LTHFSLQQAMCELEGG--------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTT 149 (415)
T ss_dssp HHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred chHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEE
Confidence 3456799999998632 34455 78889999999 8888899999999999998777655 3568888
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh--CCceeEEcccCCCcccCcC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL--KRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~--~~~~ii~De~y~~~~~~~~ 239 (280)
..++. .|++.+++++++++ ++|++++|+||||.+++ +++|+++|++ +|+++|+|++|.......
T Consensus 150 ~~v~~-------~d~~~le~ai~~~t---klV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~~- 215 (415)
T 2fq6_A 150 SWFDP-------LIGADIVKHLQPNT---KIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK- 215 (415)
T ss_dssp EEECT-------TCGGGGGGGCCTTE---EEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC-
T ss_pred EEECC-------CCHHHHHHhhccCC---cEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccCC-
Confidence 88875 27889999887554 48888999999999996 5778999999 999999999998764421
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccc-cceEEEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGER-VGALSVV 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R-vG~~v~~ 278 (280)
+ + +. ...+++.|+||.++.+|.+ +||+++.
T Consensus 216 -p------~-~~-g~Div~~S~sK~lg~~g~~~~G~l~~~ 246 (415)
T 2fq6_A 216 -A------L-DF-GIDVSIQAATKYLVGHSDAMIGTAVCN 246 (415)
T ss_dssp -G------G-GG-TCSEEEEETTTTTTCSSSCCCEEEEEC
T ss_pred -c------c-cc-CCeEEEEeCccccCCCCCceEEEEEeC
Confidence 1 1 12 2347899999999988876 4777753
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=160.30 Aligned_cols=163 Identities=9% Similarity=0.009 Sum_probs=126.6
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh---hcCCCEEEEeCCCCCChHHHHHHcC
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK---HYYQHTVYLSQPTYGNHPNFFAAAG 158 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~---~~~Gd~Vli~~P~y~~~~~~~~~~G 158 (280)
|.+..+..+||+++++++.. +++++ |+||++|+.++ +.++ +.+||+|+++.|+|..+...++..|
T Consensus 28 ~~~~~~~~~l~~~la~~~~~--------~~v~~--~~ggt~al~~~--~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g 95 (375)
T 2fnu_A 28 LTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTL--YRNFSEFSADRNEIITTPISFVATANMLLESG 95 (375)
T ss_dssp CSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHSSCCCTTSCEEEECSSSCTHHHHHHHHTT
T ss_pred ccCChHHHHHHHHHHHHhCC--------CeEEE--eCCHHHHHHHH--HHHhcccCCCCCEEEECCCccHhHHHHHHHCC
Confidence 44555678999999999731 36776 99999999999 7777 7899999999999999999999999
Q ss_pred CeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 159 LAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 159 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
++++.+++ +++ ..+|++.+++++.+++ .++++++| ||.+.+ +++|.++|+++|+++|+|++|..+....
T Consensus 96 ~~~~~~~~-~~~-~~~d~~~l~~~i~~~~---~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~ 164 (375)
T 2fnu_A 96 YTPVFAGI-KND-GNIDELALEKLINERT---KAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQ 164 (375)
T ss_dssp CEEEECCB-CTT-SSBCGGGSGGGCCTTE---EEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET
T ss_pred CEEEEecc-CCC-CCCCHHHHHhhcCcCc---eEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeEC
Confidence 99999998 444 3789999999886543 36665544 999887 5677889999999999999998765421
Q ss_pred CCChhHHHHhhhcCCeEEEEeccc--ccccccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYS--KTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~RvG~~v~~ 278 (280)
. ..+...+ .+.+.||| |.++. | +||+++.
T Consensus 165 ~------~~~~~~~--~i~~~s~s~~K~~~~-g--~g~~~~~ 195 (375)
T 2fnu_A 165 N------KKVGGFA--LASVFSFHAIKPITT-A--EGGAVVT 195 (375)
T ss_dssp T------EETTSSS--SEEEEECCTTSSSCC-S--SCEEEEE
T ss_pred C------eeccccC--CeEEEeCCCCCCccc-c--CceEEEe
Confidence 1 1111111 37788999 99974 6 8998874
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=160.08 Aligned_cols=222 Identities=13% Similarity=-0.002 Sum_probs=137.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.|...+.-|+ .++..++++.+++. .. ...|....+..++++++++++..... ...++|++ |+|
T Consensus 48 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~g 119 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGY-GRKDFAEAARRQME--EL-PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFY--TNS 119 (459)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHH--HC-SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEE--ESS
T ss_pred CCCEEEECCCchhcccCCC-CCHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCc
Confidence 3467899988854233333 23445555555554 21 22344444555566666666544321 23478888 999
Q ss_pred chhHHHHHHHHHHhhc--------CCCEEEEeCCCCCChHHHHHHcCC-------------eeeEEEeec--C-CCCCcC
Q 023599 120 GSGSLRIGADFLAKHY--------YQHTVYLSQPTYGNHPNFFAAAGL-------------AMKTYHYYD--P-KTNGLD 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~--------~Gd~Vli~~P~y~~~~~~~~~~G~-------------~~~~v~~~~--~-~~~~~d 175 (280)
|++|++.+ +..... ++++|++.+|+|.++.......+. .+..++... . ..+ .|
T Consensus 120 gseA~~~a--l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d 196 (459)
T 4a6r_A 120 GSESVDTM--IRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MT 196 (459)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CC
T ss_pred hHHHHHHH--HHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cC
Confidence 99999999 555444 468999999999987655554432 223333200 0 111 34
Q ss_pred --------HHHHHHHHhcCC-CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 176 --------FQGMLQDLGAAP-SGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 176 --------~~~l~~~~~~~~-~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
++.|++.+.+.. .+.++|+++..+|++|. +.+++.+++|.++|++||+++|+||+|.+|..... ....
T Consensus 197 ~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~ 274 (459)
T 4a6r_A 197 PDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE--WFGH 274 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchH
Confidence 788888886422 22334554444455555 55999999999999999999999999998865421 1111
Q ss_pred HHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. ..+...+++ +|||.++..|+|+||+++.
T Consensus 275 ~-~~~~~pdi~---t~sK~l~gg~~~lg~v~~~ 303 (459)
T 4a6r_A 275 Q-HFGFQPDLF---TAAKGLSSGYLPIGAVFVG 303 (459)
T ss_dssp H-HHTCCCSEE---EECGGGGTTSSCCEEEEEC
T ss_pred h-hcCCCCCee---ehhhhhcCCCCCccceeeC
Confidence 2 223333444 6899998544999999875
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=163.20 Aligned_cols=210 Identities=14% Similarity=0.060 Sum_probs=126.1
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+...+||+.|.+.+.-++ .++...+++.+.+. .. ..| .+..++++++++++..... ..+++++ |+||
T Consensus 56 g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~--~~--~~~---~~~~~~~~~la~~l~~~~~---~~~~v~~--~~gg 122 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGH-GHPRVNAAIAEALS--HG--VQY---AASHPLEVRWAERIVAAFP---SIRKLRF--TGSG 122 (453)
T ss_dssp CCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHT--TT--CSS---CSSCHHHHHHHHHHHHHCT---TCSEEEE--ESCH
T ss_pred CCEEEECcccHhhcccCC-CCHHHHHHHHHHHH--hC--CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCCH
Confidence 456789988863222232 23334444444443 22 123 2466789999998755432 3478888 9999
Q ss_pred hhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-----------cCCe------eeEEEeecCCCCCcCHHHHHHHH
Q 023599 121 SGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-----------AGLA------MKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 121 ~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-----------~G~~------~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
++|++++.++...+..+++|++.+|+|.++...... .|+. +..++. .|++.+++++
T Consensus 123 ~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l 195 (453)
T 2cy8_A 123 TETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVF 195 (453)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHH
Confidence 999999933211123457888999999866443221 1321 222221 3899999998
Q ss_pred hcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccc
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYS 262 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 262 (280)
.+...+.++|+++..+||||.++ +.+++++|.++|++||+++|+||+|.++ ... ..... ...+...++ .|||
T Consensus 196 ~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g--~~~~~-~~~~~~~di---~s~s 268 (453)
T 2cy8_A 196 ANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG--NHGMQ-ALLDVQPDL---TCLA 268 (453)
T ss_dssp HHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTC--TTHHH-HHHTCCCSE---EEEE
T ss_pred HhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccC--chhhh-HHhCCCCcE---EEEC
Confidence 74322233555444457799765 7999999999999999999999999988 421 11111 122222343 3899
Q ss_pred ccccccccccceEEEE
Q 023599 263 KTMGLYGERVGALSVV 278 (280)
Q Consensus 263 K~~~~~G~RvG~~v~~ 278 (280)
|.++ +|+|+||+++.
T Consensus 269 K~l~-~G~~~G~v~~~ 283 (453)
T 2cy8_A 269 KASA-GGLPGGILGGR 283 (453)
T ss_dssp GGGG-TTSSCEEEEEC
T ss_pred hhhh-CCcceEEEech
Confidence 9999 59999999875
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-20 Score=160.87 Aligned_cols=157 Identities=13% Similarity=0.025 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC-hHHHHHHcCCeeeEEEee
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN-HPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~-~~~~~~~~G~~~~~v~~~ 167 (280)
.++++.+++++... .++++++ |+|+++++.++ +.++..+ +.+++..+.|.. +...++..|++++.++.
T Consensus 46 ~~~~~~la~~~g~~-----~~~~v~~--~~g~t~al~~~--~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~- 114 (362)
T 3ffr_A 46 KTASDNLKTLLELP-----SNYEVLF--LASATEIWERI--IQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEA- 114 (362)
T ss_dssp HHHHHHHHHHTTCC-----TTEEEEE--ESCHHHHHHHH--HHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC-
T ss_pred HHHHHHHHHHhCCC-----CCcEEEE--eCCchHHHHHH--HHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec-
Confidence 44566666664221 2367777 99999999999 7777777 556666666652 34466778999999998
Q ss_pred cCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhC-CceeEEcccCCCcccCcCCChhHHH
Q 023599 168 DPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLK-RLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 168 ~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
+.++.+|++.++ +.++++ ++++++|+||||.+++ +++|.++|++| |+++|+|++|....... +
T Consensus 115 -~~~~~~d~~~l~--~~~~~~---~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~~--~----- 178 (362)
T 3ffr_A 115 -AFGKGFYPADIT--VPADAE---IICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPKF--D----- 178 (362)
T ss_dssp -CTTCCCCGGGCC--CCTTCC---EEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSCC--C-----
T ss_pred -CCCCCCCHHHHh--ccCCcc---EEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCccc--C-----
Confidence 345788999998 444444 8888999999999998 56678899999 99999999997665421 1
Q ss_pred HhhhcCCeEEEEeccccccc-ccccccceEEEE
Q 023599 247 MFVADGGECLVAQSYSKTMG-LYGERVGALSVV 278 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~-~~G~RvG~~v~~ 278 (280)
+ ....+++.|+||.++ .+|+ |++++.
T Consensus 179 -~---~~~d~~~~s~~K~~~~~~G~--g~~~~~ 205 (362)
T 3ffr_A 179 -W---TKIDSVFFSVQKCFGLPAGL--GVWILN 205 (362)
T ss_dssp -T---TSCSEEEEETTSTTCCCSCC--EEEEEE
T ss_pred -h---hHCcEEEEecccccCCCCce--EEEEEC
Confidence 1 113377899999998 7785 666553
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=161.81 Aligned_cols=157 Identities=19% Similarity=0.122 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~~~ 163 (280)
..+|++.+++++... +.++ +++|++|+.++ +..++.+||+|+++.++|..+...+ +..|++++.
T Consensus 60 ~~~l~~~la~~~g~~-------~~v~---~~sGt~A~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~ 127 (421)
T 2ctz_A 60 VDVLEKRLAALEGGK-------AALA---TASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRF 127 (421)
T ss_dssp HHHHHHHHHHHHTCS-------EEEE---ESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCC-------ceEE---ecCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEE
Confidence 478999999997322 2233 55569999999 7777889999999999998876665 678999988
Q ss_pred E-EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 164 Y-HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 164 v-~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
+ +. .|++.+++++.+++ ++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.+.. ..
T Consensus 128 ~~~~-------~d~~~l~~~i~~~~---~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~--~~ 192 (421)
T 2ctz_A 128 TSRE-------ERPEEFLALTDEKT---RAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL--RP 192 (421)
T ss_dssp CCTT-------CCHHHHHHHCCTTE---EEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC--CG
T ss_pred ECCC-------CCHHHHHHhhccCC---eEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccC--Cc
Confidence 8 65 17999999987643 48888999999999998 6788999999999999999993232321 11
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ +.+ .-+++.|+||.++.+|.|+|++++.
T Consensus 193 -----~-~~~-~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 193 -----L-AWG-AALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp -----G-GGT-CSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred -----c-ccC-CeEEEECCcccccCCCCcEEEEEEe
Confidence 1 122 3477999999999999999999885
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=160.48 Aligned_cols=216 Identities=14% Similarity=0.069 Sum_probs=134.4
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.|...+.-|+ .++..++++.+.+. .. ...+++.....+|++++++++. ..+++++ ++|
T Consensus 51 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~l~~~la~~~~-------~~~~v~~--~~~ 117 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGH-ANDRVVEALKAVAE--RG-TSFGAPTEIENKLAKLVIERVP-------SIEIVRM--VNS 117 (429)
T ss_dssp TCCEEEESCGGGTTCTTCB-SCHHHHHHHHHHHH--HC-SCCSSCCHHHHHHHHHHHHHST-------TCSEEEE--ESS
T ss_pred CCCEEEECCCChhhcccCC-CCHHHHHHHHHHHh--hC-cCcCCCCHHHHHHHHHHHHhCC-------CCCEEEE--eCC
Confidence 4567899998874222232 23444444444444 22 2234556677789999998853 1378888 999
Q ss_pred chhHHHHHHHHHHhh--cCCCEEEEeCCCCCChHHHHH-HcCCeeeEEEeecCCCCC------------cCHHHHHHHHh
Q 023599 120 GSGSLRIGADFLAKH--YYQHTVYLSQPTYGNHPNFFA-AAGLAMKTYHYYDPKTNG------------LDFQGMLQDLG 184 (280)
Q Consensus 120 ~~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~~~~~~~-~~G~~~~~v~~~~~~~~~------------~d~~~l~~~~~ 184 (280)
|++|++.+ +.... .++++|++.+|+|..+..... ..|.....+......... -|++.+++++.
T Consensus 118 Gsea~~~a--i~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 195 (429)
T 3k28_A 118 GTEATMSA--LRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFE 195 (429)
T ss_dssp HHHHHHHH--HHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHH
Confidence 99999999 44333 366899999999976543222 122222211110000000 17999999887
Q ss_pred cCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 185 AAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
+.+.+.++++++..+|++|.+. +++.+++|.++|++||+++|+||+|.+| ... .... ....+...+ +.+|||
T Consensus 196 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g--~~~~-~~~~~~~~d---i~t~sK 268 (429)
T 3k28_A 196 QFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA--YNCG-QGYYGVTPD---LTCLGK 268 (429)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS--TTHH-HHHHTCCCS---EEEECG
T ss_pred hCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC--cchH-HHHhCCCCc---eehhhh
Confidence 5433334555554455556555 6788999999999999999999999988 432 1111 222222233 357999
Q ss_pred cccccccccceEEEE
Q 023599 264 TMGLYGERVGALSVV 278 (280)
Q Consensus 264 ~~~~~G~RvG~~v~~ 278 (280)
.++ .|+|+||+++.
T Consensus 269 ~~~-~G~~iG~~~~~ 282 (429)
T 3k28_A 269 VIG-GGLPVGAYGGK 282 (429)
T ss_dssp GGG-TTSCCEEEEEC
T ss_pred hhc-CCCCeEEEEEc
Confidence 998 59999999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-20 Score=162.64 Aligned_cols=190 Identities=12% Similarity=0.013 Sum_probs=127.0
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCC-
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQH- 138 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd- 138 (280)
.+.+.++++.+.+.. ......|++..+..+|++++++++.. +..++ ++||++++.++ +..++.+||
T Consensus 22 ~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~l~~~la~~~~~--------~~~i~--~~~G~~a~~~a--l~~~~~~gd~ 88 (357)
T 3lws_A 22 RNVGVLKTAFAAVAD-EMASDQYGTGAIIEPFEQKFADVLGM--------DDAVF--FPSGTMAQQVA--LRIWSDETDN 88 (357)
T ss_dssp CBHHHHHHHHTTSCT-TCBCEETTEETTHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHHHHHTC
T ss_pred CCHHHHHHHHHHhhc-ccCcccccCChHHHHHHHHHHHHhCC--------CcEEE--ecCcHHHHHHH--HHHHhhcCCC
Confidence 455555544433210 11134577777899999999999632 22234 67778899888 777778888
Q ss_pred -EEEEeCCCCCChH---HHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCC-CCCCCHHHHHH
Q 023599 139 -TVYLSQPTYGNHP---NFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPT-GIDPTAQQWEQ 213 (280)
Q Consensus 139 -~Vli~~P~y~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPT-G~~~~~~~l~~ 213 (280)
.|+++.+.|..+. ......|++++.++. +++.+|++.++++. +++ ++++++||||| |.+++.+++++
T Consensus 89 ~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~~--~~~---~v~~~~p~np~~G~~~~~~~l~~ 160 (357)
T 3lws_A 89 RTVAYHPLCHLEIHEQDGLKELHPIETILVGA---ADRLMTLDEIKALP--DIA---CLLLELPQREIGGVAPAFSELET 160 (357)
T ss_dssp CEEEECTTCHHHHSSTTHHHHHSSCEEEECSC---TTSCCCHHHHHTCC--SCS---EEEEESSBGGGTSBCCCHHHHHH
T ss_pred cEEEecccceeeeeccchhhhccCcEEEEecC---CCCCcCHHHHhcCc--Ccc---eEEEEcccccCCceeCCHHHHHH
Confidence 6666655533221 234456888887774 34579999999872 233 88899999998 99999999999
Q ss_pred HHHHHHhCCceeEEcccCCCcc--cCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 214 IRQLMRLKRLLPFFDCAYQGFV--MNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 214 i~~~~~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|+++|++||++||+|++|.... +. .... ..+... ..++ +.|+||.|+.++. ||++..
T Consensus 161 i~~~~~~~~~~li~D~a~~~~~~~~~-~~~~---~~~~~~-~d~~-~~s~sK~~~~~~g--g~~~~~ 219 (357)
T 3lws_A 161 ISRYCRERGIRLHLDGARLFEMLPYY-EKTA---AEIAGL-FDSI-YISFYKGLGGIAG--AILAGP 219 (357)
T ss_dssp HHHHHHHTTCEEEEEETTHHHHHHHH-TCCH---HHHHTT-SSEE-EEESSSTTCCSSC--EEEEEC
T ss_pred HHHHHHHcCCEEEEECchhhhhhhhc-CCCh---HHHHhc-CCEE-EEeccccCCCCce--EEEEcC
Confidence 9999999999999999986211 11 1111 222222 2333 7899999943333 888753
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=160.77 Aligned_cols=166 Identities=15% Similarity=0.201 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEee--cccchhHHHHHHHHHHhhcCCCEEEEeC-CCCCChHHH---------
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQ--CLSGSGSLRIGADFLAKHYYQHTVYLSQ-PTYGNHPNF--------- 153 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~--t~g~~~al~~~~~~~~~~~~Gd~Vli~~-P~y~~~~~~--------- 153 (280)
.|...|++.+++++.. +.. ++. ++||++|+.++ +.++++|||+|++++ |.|..+..+
T Consensus 74 ~g~~~Le~~lA~l~g~--------e~a-lv~p~~~sGt~A~~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 142 (427)
T 3hvy_A 74 IGRDSLDRVYANIFNT--------ESA-FVRPHFVNGTHAIGAA--LFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV 142 (427)
T ss_dssp HHHHHHHHHHHHHHTC--------SEE-EEETTCCSHHHHHHHH--HHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred hhHHHHHHHHHHHhCC--------Cce-EEeCCCCcHHHHHHHH--HHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence 3678899999998632 222 222 67889999999 888899999999999 999988744
Q ss_pred --HHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC----CCCCCCCCCCHHHHHHHHHHHHh--CCcee
Q 023599 154 --FAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS----GHNPTGIDPTAQQWEQIRQLMRL--KRLLP 225 (280)
Q Consensus 154 --~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~----p~NPTG~~~~~~~l~~i~~~~~~--~~~~i 225 (280)
++..|++++.++. +++.+|++.+++++.+.+ +.++|++++ |+|||| +..++++|+++|++ +|+++
T Consensus 143 ~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~-~tklV~i~~s~gyp~nptg---~v~dl~~i~~ia~~~~~g~~l 215 (427)
T 3hvy_A 143 GSLREYGVKYKMVDL---KDGKVDINTVKEELKKDD-SIKLIHIQRSTGYGWRKSL---RIAEIAEIIKSIREVNENVIV 215 (427)
T ss_dssp CCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHCT-TEEEEEEESSCCSSSSCCC---CHHHHHHHHHHHHHHCSSSEE
T ss_pred hHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCCC-CCEEEEEECCCCCCCCccc---cHHHHHHHHHHHHHhCCCCEE
Confidence 3567999998887 246799999999998321 234777788 999997 45789999999999 89999
Q ss_pred EEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 226 FFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 226 i~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
++|++|..+.+... + . +.+ .-++++|+||+++.+| .+.||+++.
T Consensus 216 ivD~a~~~~~~~~~-p----~---~~g-aDiv~~S~sK~lgg~g~~~GG~i~~~ 260 (427)
T 3hvy_A 216 FVDNCYGEFVEEKE-P----T---DVG-ADIIAGSLIKNIGGGIATTGGYIAGK 260 (427)
T ss_dssp EEECTTCTTTSSSC-G----G---GGT-CSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred EEECCccccccCCC-C----c---ccC-CeEEEECCcccccccccceEEEEEEC
Confidence 99999998875321 1 1 121 2478999999998655 456777653
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-20 Score=164.10 Aligned_cols=201 Identities=17% Similarity=0.065 Sum_probs=131.2
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCC---CCHH--HHH-----HHHHHHhCCCCccccCCC
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPIT---GLPE--FNK-----LSAKLIFGADSPAIKENR 111 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---G~~~--lr~-----~ia~~l~~~~~~~~~~~~ 111 (280)
.+.|+|+.|. +. .+ +.+.++..+... .....+|+... |.+. +++ .+++++. . .+++
T Consensus 23 ~~~i~~~~~~----~~--~~-~~v~~a~~~~~~-~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g-~-----~~~~ 88 (407)
T 2dkj_A 23 REGLELIASE----NF--VS-KQVREAVGSVLT-NKYAEGYPGARYYGGCEVIDRVESLAIERAKALFG-A-----AWAN 88 (407)
T ss_dssp HTSEECCTTC----CC--CC-HHHHHHHTSGGG-GCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-C-----SEEE
T ss_pred hcceeeccCC----CC--CC-HHHHHHHHhhhh-cCcccCCCcccccCCchHHHHHHHHHHHHHHHHhC-C-----Ccce
Confidence 4679999988 32 23 444444333321 11123454332 5543 344 5666542 1 1244
Q ss_pred eEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh---HHHHHHcCCeeeEEEee-cCCCCCcCHHHHHHHHhc-C
Q 023599 112 VSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH---PNFFAAAGLAMKTYHYY-DPKTNGLDFQGMLQDLGA-A 186 (280)
Q Consensus 112 i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~---~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~~~~-~ 186 (280)
+++ ++| ++|+.++ +..++.+||+|++++|+|..+ ...++..|.++..+++. +++++.+|++.+++++.+ +
T Consensus 89 i~~--~sG-t~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 163 (407)
T 2dkj_A 89 VQP--HSG-SQANMAV--YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHR 163 (407)
T ss_dssp CCC--SSH-HHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHC
T ss_pred EEe--cch-HHHHHHH--HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcC
Confidence 543 555 6699999 666788999999999999887 34445556644444441 234678999999999975 4
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC-cccCcCCChhHHHHhhhcCCeEEEEecccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG-FVMNMDADALPVRMFVADGGECLVAQSYSKTM 265 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 265 (280)
++ ++++++|+|| ...+ +++|.++|+++|+++|+||+|.. +.+..... ...+ ...++++|+||.
T Consensus 164 ~~---~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~-----~~~~--~~di~~~s~sK~- 227 (407)
T 2dkj_A 164 PK---VIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHP-----NPLP--YAHVVTSTTHKT- 227 (407)
T ss_dssp CS---EEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSC-----CCTT--TCSEEEEESSGG-
T ss_pred Ce---EEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccC-----Cccc--cccEEEEecccc-
Confidence 44 6677899998 4444 78889999999999999999988 54432111 0011 246889999994
Q ss_pred cccccccceEEEE
Q 023599 266 GLYGERVGALSVV 278 (280)
Q Consensus 266 ~~~G~RvG~~v~~ 278 (280)
++|+|+||+++.
T Consensus 228 -l~g~~~G~~~~~ 239 (407)
T 2dkj_A 228 -LRGPRGGLILSN 239 (407)
T ss_dssp -GCCCSCEEEEES
T ss_pred -CCCCCceEEEEC
Confidence 569999999875
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-18 Score=154.56 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=132.2
Q ss_pred CCeeEeecceeecCCCCc-cchHHHHHHHHHHhccCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 42 PMKLNLGFGVYRTEEGKP-LLLNAVRQAEQLLVNDLSAD-KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
...+||..|.. ..... .++..++++.+.+.. .... ..| +.....+|++.+++++ + .+++++ ++|
T Consensus 76 ~~ylD~~sg~~--~~~lgh~~p~v~~Ai~~~~~~-~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~~--~~s 141 (439)
T 2oat_A 76 RKYFDFLSSYS--AVNQGHCHPKIVNALKSQVDK-LTLTSRAF-YNNVLGEYEEYITKLF-N-------YHKVLP--MNT 141 (439)
T ss_dssp CEEEESSGGGG--TTTTCBTCHHHHHHHHHHHTT-CSCCCTTS-EESSHHHHHHHHHHHH-T-------CSEEEE--ESS
T ss_pred CEEEEccCCcc--cccCCCCCHHHHHHHHHHHHh-cCcccCcc-CCHHHHHHHHHHHHhc-C-------CCEEEE--eCC
Confidence 45678877652 11222 233344444444431 1111 112 3345678888888886 2 277887 999
Q ss_pred chhHHHHHHHHHHhh---------cCC-CEEEEeCCCCCChH-HHHHHcC------------CeeeEEEeecCCCCCcCH
Q 023599 120 GSGSLRIGADFLAKH---------YYQ-HTVYLSQPTYGNHP-NFFAAAG------------LAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 120 ~~~al~~~~~~~~~~---------~~G-d~Vli~~P~y~~~~-~~~~~~G------------~~~~~v~~~~~~~~~~d~ 176 (280)
|++|++++ +.... .+| |+|++.+|+|.++. ..+...| ..+..++. .|+
T Consensus 142 GseA~~~a--l~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~ 212 (439)
T 2oat_A 142 GVEAGETA--CKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDL 212 (439)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCH
T ss_pred HHHHHHHH--HHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCH
Confidence 99999999 44332 357 89999999997753 3444334 34455554 389
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 255 (280)
+.+++++... +.++|+++..+|+||. +++.+++++|.++|++||+++|+||+|.+|..... . .. ....+...++
T Consensus 213 ~~le~~l~~~--~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~-~-~~-~~~~~~~~Di 287 (439)
T 2oat_A 213 PALERALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-W-LA-VDYENVRPDI 287 (439)
T ss_dssp HHHHHHTTST--TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-S-SG-GGGGTCCCSE
T ss_pred HHHHHHhCCC--CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc-c-hh-HHHhCCCCcE
Confidence 9999998522 2345555544577896 56999999999999999999999999987755321 1 11 1111222344
Q ss_pred EEEecccccccccc-cccceEEEE
Q 023599 256 LVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 256 i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
+ ||||.++ +| +|+||+++.
T Consensus 288 ~---t~sK~l~-~G~~~~G~v~~~ 307 (439)
T 2oat_A 288 V---LLGKALS-GGLYPVSAVLCD 307 (439)
T ss_dssp E---EECGGGG-TTSSCCEEEEEC
T ss_pred E---Eeccccc-CCCCCeEEEEEC
Confidence 3 9999998 69 999999875
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=156.95 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=132.2
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCC-CCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPI-TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
+...+||..|.+...-++. ++..++++.+.+. .. . +... .+..++++.+++.+..... ...+++++ |+|
T Consensus 49 g~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~--~~-~--~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~--~~g 118 (449)
T 3a8u_X 49 GRKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLS--TL-D--YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFF--TDS 118 (449)
T ss_dssp CCEEEETTHHHHTCTTCBS-CHHHHHHHHHHTT--TC-S--CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEE--ESS
T ss_pred CCEEEECCccHhhccCCCC-CHHHHHHHHHHHH--hC-C--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--cCc
Confidence 3467888777631222322 3444444444443 11 1 1111 2334455555555543321 23478888 999
Q ss_pred chhHHHHHHHHHHhhc--------CCCEEEEeCCCCCChH-HHHHHcCC------------eeeEEEeec--CCC-CCcC
Q 023599 120 GSGSLRIGADFLAKHY--------YQHTVYLSQPTYGNHP-NFFAAAGL------------AMKTYHYYD--PKT-NGLD 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~--------~Gd~Vli~~P~y~~~~-~~~~~~G~------------~~~~v~~~~--~~~-~~~d 175 (280)
|++|++++ +..+.. +||+|++.+|+|..+. ..+...|. .+..++... ... .++|
T Consensus 119 gsea~~~a--l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d 196 (449)
T 3a8u_X 119 GSECALTA--VKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGM 196 (449)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSS
T ss_pred HHHHHHHH--HHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCC
Confidence 99999999 544332 6799999999998764 34444332 234444311 001 1246
Q ss_pred --------HHHHHHHHhcCC-CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 176 --------FQGMLQDLGAAP-SGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 176 --------~~~l~~~~~~~~-~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
++.|++++.+.. .+.++|+++..+||||. +.+.+.+++|.++|++||+++|+||+|.+|..... ...+
T Consensus 197 ~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~ 274 (449)
T 3a8u_X 197 PKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS--MFGA 274 (449)
T ss_dssp CSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc--chhh
Confidence 899999987431 22334444333477997 56799999999999999999999999988764321 1111
Q ss_pred HHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
. ..+...+++ ||||.++ +| +|+||+++.
T Consensus 275 ~-~~~~~~di~---s~sK~l~-~G~~~~G~~~~~ 303 (449)
T 3a8u_X 275 D-SFGVTPDLM---CIAKQVT-NGAIPMGAVIAS 303 (449)
T ss_dssp H-HHTCCCSEE---EECGGGG-TTSSCCEEEEEE
T ss_pred h-hcCCCCCEE---EEccccc-CCCCceEEEEEC
Confidence 2 223233443 8999998 58 999998875
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=156.99 Aligned_cols=208 Identities=10% Similarity=0.081 Sum_probs=123.8
Q ss_pred CCCeeEeecceeecCCCCccchHHH-HHHHHHHhccCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAV-RQAEQLLVNDLSAD-KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
+...+||..|.. ........+.+ +++.+.+.. .... ..| +.....+|++.+++++ + .+++++ ++
T Consensus 64 G~~ylD~~~g~~--~~~lgh~~p~v~~ai~~~~~~-~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~~--~~ 129 (433)
T 1z7d_A 64 DKRYYDFLSAYS--SVNQGHCHPNILNAMINQAKN-LTICSRAF-FSVPLGICERYLTNLL-G-------YDKVLM--MN 129 (433)
T ss_dssp CCEEEESSHHHH--TTTTCBTCHHHHHHHHHHHTT-CSCCCTTS-EEHHHHHHHHHHHHHH-T-------CSEEEE--ES
T ss_pred CCEEEEcccchh--hcccCCCCHHHHHHHHHHHHh-CCCccCCc-CCHHHHHHHHHHHhhc-C-------CCeEEE--eC
Confidence 345778877652 12222133444 444444431 1110 112 2223456777777775 1 377887 99
Q ss_pred cchhHHHHHHHHHHh-------hcCC-CEEEEeCCCCCChHH-HHHHcC------------CeeeEEEeecCCCCCcCHH
Q 023599 119 SGSGSLRIGADFLAK-------HYYQ-HTVYLSQPTYGNHPN-FFAAAG------------LAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 119 g~~~al~~~~~~~~~-------~~~G-d~Vli~~P~y~~~~~-~~~~~G------------~~~~~v~~~~~~~~~~d~~ 177 (280)
||++|++++..+... +.+| |+|++.+|+|..+.. .+...| ..+..++. .|++
T Consensus 130 sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~ 202 (433)
T 1z7d_A 130 TGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLE 202 (433)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHH
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHH
Confidence 999999999332211 1368 999999999977643 233223 23333433 3899
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
.+++++.. .+.++|+++..+|+||.+ ++.+.+++|.++|++||+++|+||+|.+|..... ... ....+...+++
T Consensus 203 ~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~--~~~-~~~~~~~~di~ 277 (433)
T 1z7d_A 203 ALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLC-VHHYNVKPDVI 277 (433)
T ss_dssp HHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSG-GGGGTCCCSEE
T ss_pred HHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc--chh-hHhcCCCCCEE
Confidence 99999852 223455555446778975 6888999999999999999999999987754321 111 11112223443
Q ss_pred EEecccccccccc-cccceEEEE
Q 023599 257 VAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 257 ~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
||||.++ +| +|+||+++.
T Consensus 278 ---t~sK~l~-~G~~~~G~v~~~ 296 (433)
T 1z7d_A 278 ---LLGKALS-GGHYPISAVLAN 296 (433)
T ss_dssp ---EECGGGG-TTSSCCEEEEEC
T ss_pred ---EECcccc-CCCCCeEEEEEC
Confidence 8999999 89 999999875
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=162.87 Aligned_cols=218 Identities=12% Similarity=-0.001 Sum_probs=135.9
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchh
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSG 122 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~ 122 (280)
..|||..|...+.-|+ .++..++++.+++.+-......+.+.....+|++.+++++. ...+++++ ++||++
T Consensus 76 ~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~------~~~~~v~~--~~sGse 146 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGH-GHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITP------AGLDTVFF--SDSGSV 146 (457)
T ss_dssp EEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSS------TTEEEEEE--ESSHHH
T ss_pred EEEECCCcHhhhccCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC------CCcCEEEE--eCcHHH
Confidence 5677776642122232 23344444444444211111122233345567777777641 12367887 999999
Q ss_pred HHHHHHHHHHhhc-------CC-CEEEEeCCCCCChHHHHHHcC--------------CeeeEEEeecCCC-CCcCHHHH
Q 023599 123 SLRIGADFLAKHY-------YQ-HTVYLSQPTYGNHPNFFAAAG--------------LAMKTYHYYDPKT-NGLDFQGM 179 (280)
Q Consensus 123 al~~~~~~~~~~~-------~G-d~Vli~~P~y~~~~~~~~~~G--------------~~~~~v~~~~~~~-~~~d~~~l 179 (280)
|++++ +..... +| ++|++.+++|.++.......+ ..+..++. .... ...|++.|
T Consensus 147 A~~~A--lk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~d~~~l 223 (457)
T 3tfu_A 147 SVEVA--AKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQ-VPRDYDPAYSAAF 223 (457)
T ss_dssp HHHHH--HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECC-CCSSCCHHHHHHH
T ss_pred HHHHH--HHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecC-CCcccCHHHHHHH
Confidence 99999 544443 55 589999999977654443331 13334443 1111 12478999
Q ss_pred HHHHhcCCCCcEEEEecC-CCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 180 LQDLGAAPSGAIVLLQAS-GHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~-p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
++++.+.+.+.++|+++. ++||+|.++ +.+.+++|.++|++||+++|+||+|.+|..... .... ...+...+++
T Consensus 224 e~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~--~~a~-~~~~~~pdii- 299 (457)
T 3tfu_A 224 EAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA--LFAA-DHAGVSPDIM- 299 (457)
T ss_dssp HHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTH-HHHTCCCSEE-
T ss_pred HHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc--hhHh-HhcCCCceEE-
Confidence 999875333445777777 899999877 778899999999999999999999998865321 1111 2223334555
Q ss_pred Eecccccccccc-cccceEEEEc
Q 023599 258 AQSYSKTMGLYG-ERVGALSVVR 279 (280)
Q Consensus 258 ~~S~SK~~~~~G-~RvG~~v~~~ 279 (280)
+|||.++ .| +|+||+++..
T Consensus 300 --t~sK~l~-gG~~~lG~v~~~~ 319 (457)
T 3tfu_A 300 --CVGKALT-GGYLSLAATLCTA 319 (457)
T ss_dssp --EECGGGG-TTSSCCEEEEEEH
T ss_pred --EEChhhh-CCCcceEEEEEcH
Confidence 9999887 45 7999998753
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=159.08 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=139.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...|||+.|...+.-|+ .++..++++.+++. .. .+.|....+..++++++++++..... ...+++++ |+|
T Consensus 49 ~G~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~g 120 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGY-GRQKIADAIATQAK--NL-AYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYF--GLS 120 (460)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHH--HH-SCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEE--ESS
T ss_pred CCCEEEECCcchhhccCCC-CCHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHhhCC--CCcCEEEE--eCc
Confidence 3467899988843222332 23444444444444 11 12344444555566666666543321 23478888 999
Q ss_pred chhHHHHHHHHHHhhc--------CCCEEEEeCCCCCChHHHHHHcCC-------------eeeEEEeec---CCCCCcC
Q 023599 120 GSGSLRIGADFLAKHY--------YQHTVYLSQPTYGNHPNFFAAAGL-------------AMKTYHYYD---PKTNGLD 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~--------~Gd~Vli~~P~y~~~~~~~~~~G~-------------~~~~v~~~~---~~~~~~d 175 (280)
|++|++.+ +..... ++++|++.+|+|.++.......+. .+..++... .++.+.+
T Consensus 121 GseA~~~a--l~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 198 (460)
T 3gju_A 121 GSDANETN--IKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMS 198 (460)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCC
T ss_pred hHHHHHHH--HHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccC
Confidence 99999999 544442 458999999999887655544322 234444310 0112333
Q ss_pred --------HHHHHHHHhcC-CCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 176 --------FQGMLQDLGAA-PSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 176 --------~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
++.|++++.+. +.+.++|+++.++|++|. +.+.+.+++|.++|++||+++|+||+|.+|..... ....
T Consensus 199 ~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~ 276 (460)
T 3gju_A 199 EEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT--MFGS 276 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHH
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchH
Confidence 58888888642 123456666666777776 77888899999999999999999999998865321 1111
Q ss_pred HHhhhcCCeEEEEecccccccccc-cccceEEEEc
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYG-ERVGALSVVR 279 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~~ 279 (280)
...+...++ .+|||.++ .| +|+||+++..
T Consensus 277 -~~~~~~pdi---~t~sK~l~-gG~~~lg~v~~~~ 306 (460)
T 3gju_A 277 -DHYGIKPDL---ITIAKGLT-SAYAPLSGVIVAD 306 (460)
T ss_dssp -HHHTCCCSE---EEECGGGT-TTSSCCEEEEEEH
T ss_pred -hhcCCCCCe---eeeehhhc-CCCCCeEEEEECH
Confidence 222333343 36899997 56 8999998763
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=158.84 Aligned_cols=219 Identities=13% Similarity=0.066 Sum_probs=131.7
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+...+||..|...+.-|+ .++..++++.+++. .. .+|....+..++++++++++...... -..+++++ |+||
T Consensus 63 G~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~--~~sG 134 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGA-SHPAVAAAIADQAT--HF--THTCFMVTPYEQYVQVAELLNALTPG-DHDKRTAL--FNSG 134 (453)
T ss_dssp SCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHH--HC--SCCTTTTSCCHHHHHHHHHHHHHSSC-SSCEEEEE--ESSH
T ss_pred CCEEEEcCCCcccCcCCC-CCHHHHHHHHHHHH--hc--cccccCcCCCHHHHHHHHHHHHhCCC-CCCcEEEE--eCcH
Confidence 345788887753222332 24444555555554 22 23444445555555555554332211 01367887 9999
Q ss_pred hhHHHHHHHHHHhh--cCCCEEEEeCCCCCChHHHHHHcCC--------------eeeEEEeecC--CCCCcC-------
Q 023599 121 SGSLRIGADFLAKH--YYQHTVYLSQPTYGNHPNFFAAAGL--------------AMKTYHYYDP--KTNGLD------- 175 (280)
Q Consensus 121 ~~al~~~~~~~~~~--~~Gd~Vli~~P~y~~~~~~~~~~G~--------------~~~~v~~~~~--~~~~~d------- 175 (280)
++|++++ +.... ..+++|++.+++|.++.......+. .+..++.... +.++.+
T Consensus 135 seA~~~a--lk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (453)
T 4ffc_A 135 AEAVENA--IKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARR 212 (453)
T ss_dssp HHHHHHH--HHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHH
T ss_pred HHHHHHH--HHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHH
Confidence 9999999 43322 2458999999999877655544322 3444554111 112333
Q ss_pred -HHHHHHHHhcCCCCcEEEEecCCCCCCC--CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcC
Q 023599 176 -FQGMLQDLGAAPSGAIVLLQASGHNPTG--IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADG 252 (280)
Q Consensus 176 -~~~l~~~~~~~~~~~~~v~~~~p~NPTG--~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 252 (280)
.+.+++.+.. +...+++++|+||+| ...+.+.+++|.++|++||+++|+||+|.+|..... ..... ..+..
T Consensus 213 ~~~~l~~~i~~---~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~a~~-~~~~~ 286 (453)
T 4ffc_A 213 AISRIETQIGA---QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA--WFASE-HEGIV 286 (453)
T ss_dssp HHHHHHHHTCG---GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHH-HHTCC
T ss_pred HHHHHHHhcCC---CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc--cchhh-hcCCC
Confidence 2444444432 223566667888887 445788899999999999999999999998865321 11111 11222
Q ss_pred CeEEEEecccccccccccccceEEEEc
Q 023599 253 GECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 253 ~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+ +.+|||.++. |+|+||+++..
T Consensus 287 pd---i~t~sK~~~~-G~~~G~~~~~~ 309 (453)
T 4ffc_A 287 PD---IVTMAKGIAG-GMPLSAVTGRA 309 (453)
T ss_dssp CS---EEEECGGGGT-TSSCEEEEEEH
T ss_pred cc---hHhhhhhhcC-CcCeEEEEECH
Confidence 23 4579999985 99999998753
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.7e-19 Score=160.07 Aligned_cols=194 Identities=13% Similarity=0.032 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCC-----CeEEeecccchhHHHHHHHHHHhhc--
Q 023599 63 NAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKEN-----RVSTVQCLSGSGSLRIGADFLAKHY-- 135 (280)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~-----~i~~v~t~g~~~al~~~~~~~~~~~-- 135 (280)
+.+.++...... . ...+|...++..++++.+.+++....+.+ .+ .+++ |+||++|+.++ +.++..
T Consensus 56 ~~v~e~~~~a~~-~-~~~~~~~~~~~~~l~~~~~~~la~l~g~~--~~~~~~~~~~~--t~ggtea~~~a--l~a~~~~~ 127 (452)
T 2dgk_A 56 ENVHKLMDLSIN-K-NWIDKEEYPQSAAIDLRCVNMVADLWHAP--APKNGQAVGTN--TIGSSEACMLG--GMAMKWRW 127 (452)
T ss_dssp HHHHHHHHHTTT-C-BTTCTTTCHHHHHHHHHHHHHHHHHTTCC--CCTTSCCEEEE--ESSHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHhc-c-CCCChhhChhHHHHHHHHHHHHHHHhCCC--cccccCCceEE--eCCHHHHHHHH--HHHHHHHH
Confidence 445444444331 1 12345555677777777766654333321 23 3666 99999999998 655443
Q ss_pred ------CC-----CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCC
Q 023599 136 ------YQ-----HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGI 204 (280)
Q Consensus 136 ------~G-----d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~ 204 (280)
+| ++|++++ .|..+...++..|++++.++. +++++.+|++.|++++.+++ ++|++++|+||||.
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~-~~~~~~~d~~~l~~~i~~~t---~~v~~~~~~n~tG~ 202 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPM-RPGQLFMDPKRMIEACDENT---IGVVPTFGVTYTGN 202 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCC-BTTBCSCCHHHHHHHCCTTE---EEEECBBSCTTTCB
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEec-CCCCCeECHHHHHHHHhhCC---EEEEEEcCCcCCcc
Confidence 55 5999999 998899999999999999998 44468899999999997654 48999999999999
Q ss_pred CCCHHHHHHHHHHHHhC------CceeEEcccCCCccc---CcCCChhHHHHhhhcCCeEEEEecccccccccccccceE
Q 023599 205 DPTAQQWEQIRQLMRLK------RLLPFFDCAYQGFVM---NMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 205 ~~~~~~l~~i~~~~~~~------~~~ii~De~y~~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
+.+ +++|.++|+++ ++++++|++|..+.. ..... ..+ ....--.+..|++| |+++|+|+||+
T Consensus 203 ~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~----~~~-~~~~~d~~~~~~hK-~~~~~~~~G~~ 273 (452)
T 2dgk_A 203 YEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV----WDF-RLPRVKSISASGHK-FGLAPLGCGWV 273 (452)
T ss_dssp BCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC----CST-TSTTEEEEEEETTT-TTCCCSSCEEE
T ss_pred cCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch----hhc-CCCCCcEEEECccc-ccCCCCCeEEE
Confidence 865 56678888884 999999999998753 11100 011 11122345678899 66799999999
Q ss_pred EEE
Q 023599 276 SVV 278 (280)
Q Consensus 276 v~~ 278 (280)
++.
T Consensus 274 ~~~ 276 (452)
T 2dgk_A 274 IWR 276 (452)
T ss_dssp EES
T ss_pred EEc
Confidence 874
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-19 Score=158.61 Aligned_cols=157 Identities=19% Similarity=0.154 Sum_probs=120.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH-----HHcCC
Q 023599 85 ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF-----AAAGL 159 (280)
Q Consensus 85 ~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~-----~~~G~ 159 (280)
.....+|++.++++... ++.++ +++|++|+.++ ++++.+||+|++++|+|......+ +..|+
T Consensus 66 ~p~~~~l~~~la~l~g~--------~~~~~--~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 132 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGG--------TRAFA--FASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGL 132 (400)
T ss_dssp CHHHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC--------CCEEE--ecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCe
Confidence 33456788888887522 34444 77779998875 457889999999999998655554 34599
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
+++.++. .|++.+++++.+++ ++|++++|+||||.+++ +++|+++|++||+++|+|++|....+..
T Consensus 133 ~~~~v~~-------~d~~~l~~~i~~~~---~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~- 198 (400)
T 3nmy_A 133 DFSFVDL-------TDPAAFKAAIRADT---KMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR- 198 (400)
T ss_dssp EEEEECT-------TSHHHHHHHCCTTE---EEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-
T ss_pred EEEEECC-------CCHHHHHHHhccCC---CEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 9988886 27999999987543 48888999999999996 7788999999999999999997544321
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccce-EEE
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGA-LSV 277 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~-~v~ 277 (280)
+ .+. ...+++.|+||.++.+|.++|+ +++
T Consensus 199 -~-------~~~-g~div~~S~sK~l~g~g~~~gG~~vv 228 (400)
T 3nmy_A 199 -P-------LSL-GADLVVHSATKYLNGHSDMVGGIAVV 228 (400)
T ss_dssp -G-------GGG-TCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred -h-------hhc-CCcEEEecCccccCCCCCcceeEEEE
Confidence 0 112 2458899999999989999988 554
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=158.81 Aligned_cols=211 Identities=13% Similarity=0.065 Sum_probs=131.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||+.|...+.-++ .++..++++.+.+. ......| +.....+|++.+++++. ..+++++ |+|
T Consensus 54 ~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~--~~~~~~~-~~~~~~~l~~~la~~~~-------~~~~v~~--~~s 120 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGH-KHPRVLEAVEEALA--RGWLYGA-PGEAEVLLAEKILGYVK-------RGGMIRF--VNS 120 (434)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHH--TCSCCSS-CCHHHHHHHHHHHHHHC-------TTCEEEE--ESS
T ss_pred CCCEEEEcccchhcccCCC-CCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHhCC-------CCCEEEE--eCC
Confidence 3456889988864222232 23344444444444 2212223 22234556666666641 2378888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH--------------HcCC------eeeEEEeecCCCCCcCHHHH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA--------------AAGL------AMKTYHYYDPKTNGLDFQGM 179 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~--------------~~G~------~~~~v~~~~~~~~~~d~~~l 179 (280)
|++|++++.++...+.++++|++.+|+|..+..... ..|+ .+..++. .|++.+
T Consensus 121 gseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~l 193 (434)
T 2epj_A 121 GTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEAL 193 (434)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHH
Confidence 999999993321123456788999999977533211 1232 2344443 389999
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 180 LQDLGAAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
++++++...+.++|+++..+||||.++ +.+.+++|.++|++||+++|+||+|.+|..+ .... ....+...+ +
T Consensus 194 e~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g---~~~~-~~~~~~~~d---i 266 (434)
T 2epj_A 194 ERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG---LEGA-QGYFNIEGD---I 266 (434)
T ss_dssp HHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSS---TTHH-HHHHTCCCS---E
T ss_pred HHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCC---cchh-hHHhCCCCC---e
Confidence 999875322334555444456799876 7999999999999999999999999987332 1111 112222234 3
Q ss_pred ecccccccccccccceEEEE
Q 023599 259 QSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~ 278 (280)
.||||.++. |+|+||+++.
T Consensus 267 ~s~sK~l~~-G~~~G~v~~~ 285 (434)
T 2epj_A 267 IVLGKIIGG-GFPVGAVAGS 285 (434)
T ss_dssp EEEEGGGGT-TSSCEEEEEC
T ss_pred eeecchhcC-Ccceeeeeec
Confidence 499999995 9999999875
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=158.50 Aligned_cols=220 Identities=12% Similarity=-0.026 Sum_probs=128.3
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|...+.-|+. ++..++++.+.+. .. ..|....+..+.++++++++..... ...+++++ |+|
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~s 112 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHR-KKELDDAIKKQLG--KI--AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFY--SDS 112 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBS-CHHHHHHHHHHHT--TC--SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEE--ESS
T ss_pred CCCEEEECCcchhhccCCCC-CHHHHHHHHHHHH--hc--cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCc
Confidence 34678999887542333432 3444444444444 21 2233444555666666666544322 12378888 999
Q ss_pred chhHHHHHHHHHHhhc----CC----CEEEEeCCCCCChHHHHHHcCC-------------eeeEEEeecCCCCCc----
Q 023599 120 GSGSLRIGADFLAKHY----YQ----HTVYLSQPTYGNHPNFFAAAGL-------------AMKTYHYYDPKTNGL---- 174 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~----~G----d~Vli~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~~---- 174 (280)
|++|++.+ +..... +| |+|++.+|+|.++.......+. .+..++. ++.+..
T Consensus 113 GseA~~~a--l~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 188 (448)
T 3dod_A 113 GAEAMEIA--LKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGD 188 (448)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCC
T ss_pred hHHHHHHH--HHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccc
Confidence 99999999 554443 44 9999999999776544332222 2233333 222222
Q ss_pred -------CHHHHHHHHhcCCCCcEEEEecCCC-CCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 175 -------DFQGMLQDLGAAPSGAIVLLQASGH-NPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 175 -------d~~~l~~~~~~~~~~~~~v~~~~p~-NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
|++.|++++.+.+.+.++|+++..+ |++|. +.+.+.+++|.++|++||+++|+||+|.+|......-.
T Consensus 189 ~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a--- 265 (448)
T 3dod_A 189 PDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA--- 265 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG---
T ss_pred hhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhh---
Confidence 4788999887332233455555555 77874 56788899999999999999999999998865321111
Q ss_pred HHhhhcCCeEEEEecccccccccc-cccceEEEEc
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYG-ERVGALSVVR 279 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~~ 279 (280)
....+...+ +.+|||.++ .| +|+||+++..
T Consensus 266 ~~~~~~~~d---i~t~sK~l~-~G~~~ig~v~~~~ 296 (448)
T 3dod_A 266 CEHENVQPD---LMAAGKGIT-GGYLPIAVTFATE 296 (448)
T ss_dssp GGGGTCCCS---EEEECGGGG-TTSSCCEEEEEEH
T ss_pred hhhcCCCCC---EEEeccccc-CCcCceEEEEECH
Confidence 111122233 347899998 59 5999998753
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-20 Score=161.77 Aligned_cols=172 Identities=12% Similarity=0.013 Sum_probs=120.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCE--EEEeCCCCCCh---HHHH
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHT--VYLSQPTYGNH---PNFF 154 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~--Vli~~P~y~~~---~~~~ 154 (280)
..|++..+..+|++++++++.. +..++ ++||++++.++ +..++.+||+ |+++.++|... ....
T Consensus 42 ~~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~~g~~a~~~a--~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~ 109 (359)
T 3pj0_A 42 DIYGNGAVIEDFETKIAKILGK--------QSAVF--FPSGTMAQQIA--LRIWADRKENRRVAYHPLSHLEIHEQDGLK 109 (359)
T ss_dssp CBTTBSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred CcccCCHHHHHHHHHHHHHhCC--------CcEEE--eCCHHHHHHHH--HHHHHhcCCCcEEEEeccceeeehhcchHH
Confidence 4577777889999999999632 22234 67888999988 7777788876 44444443211 1222
Q ss_pred HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 155 AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPT-GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 155 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPT-G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
...|++++.++. +++.+|++.++++ .++++ +|++++||||| |.+++.+++++|+++|++||++||+|++|..
T Consensus 110 ~~~g~~~~~v~~---~~~~~d~~~l~~~-~~~~~---~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~ 182 (359)
T 3pj0_A 110 ELQQITPLLLGT---ANQLLTIDDIKSL-REPVS---SVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLW 182 (359)
T ss_dssp HHHCCEEEECSC---TTSCCCHHHHHTC-SSCCS---EEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCG
T ss_pred HhcCceEEecCC---cCCCcCHHHHHhc-cCCce---EEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence 456989888876 3467999999987 44444 88899999998 7999999999999999999999999999865
Q ss_pred cccCc-CCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 234 FVMNM-DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+.... ... ...+. ....++ +.|+||.++.++ . ||++.
T Consensus 183 ~~~~~~~~~---~~~~~-~~~d~~-~~s~sK~~~~~~-g-g~~~~ 220 (359)
T 3pj0_A 183 EITPFYQKS---AEEIC-ALFDSV-YVSFYKGIGGIA-G-AILAG 220 (359)
T ss_dssp GGHHHHTCC---HHHHH-TTCSEE-EEESSSTTCCSS-C-EEEEE
T ss_pred cchhhhCCC---HHHhh-ccCCEE-EEeccccCCCcc-e-EEEEC
Confidence 54210 111 12222 222344 568999997552 2 66554
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=155.84 Aligned_cols=198 Identities=13% Similarity=0.055 Sum_probs=129.6
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCC--CCCC---CCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADK--EYLP---ITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~---~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
++.+.|+.+.. + +.++..+++..+.+....+... .|.+ .....++++.+++++.. .++++++
T Consensus 27 ~~~~yld~~~~----~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~------~~~~v~~-- 93 (416)
T 1qz9_A 27 EGVIYLDGNSL----G-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA------RDGEVVV-- 93 (416)
T ss_dssp TTCEECCTTTS----C-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC------CTTSEEE--
T ss_pred CCeEeecCCCc----C-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC------CcccEEE--
Confidence 35677877763 2 2344445544444431101000 0111 13446788888887521 2478887
Q ss_pred cccchhHHHHHHHHHHhh------cCCCEEE-EeCCCCCChHHHH----HHc--CCeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 117 CLSGSGSLRIGADFLAKH------YYQHTVY-LSQPTYGNHPNFF----AAA--GLAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~------~~Gd~Vl-i~~P~y~~~~~~~----~~~--G~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
|+|+++++.++ +..++ .+||+|+ ++.+.|+.+...+ +.. |++++.++. ++.+++++
T Consensus 94 ~~g~t~al~~a--l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i 162 (416)
T 1qz9_A 94 TDTTSINLFKV--LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAI 162 (416)
T ss_dssp CSCHHHHHHHH--HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHC
T ss_pred eCChhHHHHHH--HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHh
Confidence 99999999877 55544 8898754 4455666544332 223 888887764 67888888
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
.++ .+++++++|+||||.+++ +++|.++|+++|+++|+|++|...... ..+..+ + .-+++.|++|
T Consensus 163 ~~~---~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~-----~~~~~~---~-~d~~~~s~~K 227 (416)
T 1qz9_A 163 DQD---TAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAVP-----VDLHQA---G-ADYAIGCTYK 227 (416)
T ss_dssp STT---EEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-----CCHHHH---T-CSEEEECSSS
T ss_pred CCC---ceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccccCcC-----CChhhc---C-CCEEEecCcc
Confidence 643 348899999999999998 677889999999999999999742221 111222 1 2377899999
Q ss_pred ccccccccc-ceEEEEc
Q 023599 264 TMGLYGERV-GALSVVR 279 (280)
Q Consensus 264 ~~~~~G~Rv-G~~v~~~ 279 (280)
.++ +|.|+ ||+++..
T Consensus 228 ~l~-~g~~~~g~l~~~~ 243 (416)
T 1qz9_A 228 YLN-GGPGSQAFVWVSP 243 (416)
T ss_dssp TTC-CCTTCCCEEEECT
T ss_pred cCC-CCCCCeEEEEECH
Confidence 985 78888 9998753
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-19 Score=160.44 Aligned_cols=225 Identities=10% Similarity=0.021 Sum_probs=139.0
Q ss_pred hHHHHHHHhhcCCCCCeeEeeccee-ecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 023599 28 PIYAVMAAFREDPSPMKLNLGFGVY-RTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA 106 (280)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~ 106 (280)
.+.+..+.+.. .+.+.++|+.|.+ .|......++...+++.+.+. .+ ...|.+..+..+||+++++++..
T Consensus 19 ~~~~~~~~~~~-~g~~~~~~~~~~~ylD~~~~~~~~~v~~a~~~~l~--~~-~~~y~~~~~~~~l~~~la~~~~~----- 89 (467)
T 2oqx_A 19 TRAYREEAIIK-SGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM--RG-DEAYSGSRSYYALAESVKNIFGY----- 89 (467)
T ss_dssp CHHHHHHHHHH-TTSCGGGSCGGGCSEECSCCSSCSCCCHHHHHHTT--SC-CCCSSSCHHHHHHHHHHHHHHCC-----
T ss_pred cHHHHHHHHHH-cCCCceeccCCCeeEecccCCCcHHHHHHHHHHhc--cC-cceeccCchhHHHHHHHHHHhCc-----
Confidence 34344444432 3445666666642 122111112222333333333 22 24687778889999999999721
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHhhcC-----C----CEEEEeCCCCCChHHHHHHcCCeeeEEEee---c-----C
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAKHYY-----Q----HTVYLSQPTYGNHPNFFAAAGLAMKTYHYY---D-----P 169 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~~~~-----G----d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~---~-----~ 169 (280)
+++++ |+||++|+.++ +..+..+ | |+|++..+.|..+.......|+.+...... + +
T Consensus 90 ---~~v~~--t~~gt~A~~~a--l~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (467)
T 2oqx_A 90 ---QYTIP--THQGRGAEQIY--IPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYD 162 (467)
T ss_dssp ---SEEEE--EC--CCSHHHH--HHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCT
T ss_pred ---CcEEE--cCCcHHHHHHH--HHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCC
Confidence 56777 99999999999 6666777 8 998877444444455556666665543210 0 1
Q ss_pred CCCCcCHHHHHHHHhcCC-CCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHhCCceeEEcccCCC----------cccC
Q 023599 170 KTNGLDFQGMLQDLGAAP-SGAIVLLQASGHNPT-GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG----------FVMN 237 (280)
Q Consensus 170 ~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~NPT-G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~----------~~~~ 237 (280)
.++.+|++.|++++.+.. .+.++|++++|+||| |.+++.+++++|+++|++||+++|+|+++.. ..+.
T Consensus 163 ~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~ 242 (467)
T 2oqx_A 163 FKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYK 242 (467)
T ss_dssp TTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGT
T ss_pred ccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhccccccccc
Confidence 235689999999997421 122378888999998 9999999999999999999999999954322 2222
Q ss_pred cCCChhHHHHhh----hcCCeEEEEeccccccccc-ccccceEEE
Q 023599 238 MDADALPVRMFV----ADGGECLVAQSYSKTMGLY-GERVGALSV 277 (280)
Q Consensus 238 ~~~~~~~~~~~~----~~~~~~i~~~S~SK~~~~~-G~RvG~~v~ 277 (280)
. ... ..+. .. ..+ ++.|+||.++++ | ||++.
T Consensus 243 g-~~~---~~~~~~~~~~-~d~-~~~s~sK~~g~~~G---g~~~~ 278 (467)
T 2oqx_A 243 D-WTI---EQITRETYKY-ADM-LAMSAKKDAMVPMG---GLLCM 278 (467)
T ss_dssp T-SCH---HHHHHHHGGG-CSE-EEEESSSTTCCSSC---EEEEE
T ss_pred C-ccH---HHHhhhhhcc-CCe-EEEecccccCCCCc---eEEEe
Confidence 1 111 2221 12 233 478999999876 3 56554
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=154.39 Aligned_cols=165 Identities=14% Similarity=0.062 Sum_probs=122.2
Q ss_pred CCCHHHHHHH-HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeE
Q 023599 86 TGLPEFNKLS-AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~i-a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~ 163 (280)
....+|++++ ++++. . .+++++ ++||++|+.++ +.++ +.+||+|+++.|+|..+...+...|++++.
T Consensus 36 ~~~~~l~~~~~a~~~g-~------~~~~v~--~~sgt~al~~a--l~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~ 104 (377)
T 3ju7_A 36 PINQRFEQTIMSGFFQ-N------RGAVTT--VANATLGLMAA--IQLKKRKKGKYALMPSFTFPATPLAAIWCGLEPYF 104 (377)
T ss_dssp HHHHHHHHHHHHHTST-T------CSEEEE--ESCHHHHHHHH--HHHHSCTTCCEEEEESSSCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhC-C------CCeEEE--eCCHHHHHHHH--HHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEE
Confidence 3478999999 99863 1 145555 99999999999 7776 789999999999999999999999999999
Q ss_pred EEeecCCCCCcCHHHHHHHH-hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 164 YHYYDPKTNGLDFQGMLQDL-GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~-~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
+++ +++++.+|++.+++++ +++ .+.++|+ |+||||...+ +++|.++|+ +|++||+|++|.....-..
T Consensus 105 v~~-~~~~~~~d~~~l~~~i~~~~-~~tk~v~---~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~~--- 172 (377)
T 3ju7_A 105 IDI-SIDDWYMDKTVLWDKIEELK-EEVAIVV---PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNGG--- 172 (377)
T ss_dssp ECB-CTTTCSBCHHHHHHHHHHHG-GGEEEEC---CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEETT---
T ss_pred Eec-CCccCCcCHHHHHHHHhcCC-CCceEEE---EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeECC---
Confidence 998 5567899999999988 444 1123555 6889999876 566778888 9999999999976543111
Q ss_pred hHHHHh-hhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMF-VADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~-~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+ ....+-.++..+.+|.++. | +.|+++..
T Consensus 173 ---~~~g~~~~d~~~~S~~~~K~l~~-g-~gG~~~~~ 204 (377)
T 3ju7_A 173 ---MHYGQDFSGMIIYSFHATKPFGI-G-EGGLIYSK 204 (377)
T ss_dssp ---EETTTTCSSEEEEECBTTSSSCC-B-SCEEEEES
T ss_pred ---EeccCCCCcEEEEECCCCCcCCC-C-CcEEEEEC
Confidence 111 0112333334445799984 5 67777653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=155.84 Aligned_cols=222 Identities=11% Similarity=0.009 Sum_probs=131.6
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccc
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG 120 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~ 120 (280)
+...+||..|...+.-|+ .++..++++.+++. .. .+|....+..+++.++++++...... ...+++++ |+||
T Consensus 60 g~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~--~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~~--~~sG 131 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGN-SAPKVVEAVRSQVG--DF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSAL--FNSG 131 (451)
T ss_dssp SCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHT--TC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEEE--ESSH
T ss_pred CCEEEEcCCCccccccCC-CCHHHHHHHHHHHH--hc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEEE--eCcH
Confidence 345788887753222232 23444444445444 22 23544445556666666665433211 11367887 9999
Q ss_pred hhHHHHHHHHHHhhc--CCCEEEEeCCCCCChHHHHHHcCC--------------eeeEEEeec--------CCCCC---
Q 023599 121 SGSLRIGADFLAKHY--YQHTVYLSQPTYGNHPNFFAAAGL--------------AMKTYHYYD--------PKTNG--- 173 (280)
Q Consensus 121 ~~al~~~~~~~~~~~--~Gd~Vli~~P~y~~~~~~~~~~G~--------------~~~~v~~~~--------~~~~~--- 173 (280)
++|++++ +..... .+++|++.+++|.++.......+. .+..++... .+..+
T Consensus 132 seA~~~A--lk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 209 (451)
T 3oks_A 132 SEAVENA--VKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE 209 (451)
T ss_dssp HHHHHHH--HHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHH
T ss_pred HHHHHHH--HHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhH
Confidence 9999999 543332 448999999999877655544322 344555410 00000
Q ss_pred cCHHHHHHHHhcC-CCCcEEEEecCCCCCCCC--CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh
Q 023599 174 LDFQGMLQDLGAA-PSGAIVLLQASGHNPTGI--DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA 250 (280)
Q Consensus 174 ~d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~--~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 250 (280)
.+++.+++.+.+. ..+....++++|.|++|- ..+.+.+++|.++|++||+++|+||+|.+|..... ... ....+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~-~~~~~ 286 (451)
T 3oks_A 210 LAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA--MFA-CEHEG 286 (451)
T ss_dssp HHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSG-GGGGT
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc--chh-hhhcC
Confidence 1345555555431 112235555667777763 44677799999999999999999999998865321 111 11112
Q ss_pred cCCeEEEEecccccccccccccceEEEEc
Q 023599 251 DGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 251 ~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
...+++ ||||.++ .|||+||+++..
T Consensus 287 ~~pdi~---t~sK~l~-~G~~iG~v~~~~ 311 (451)
T 3oks_A 287 IDPDLI---VTAKGIA-GGLPLSAVTGRA 311 (451)
T ss_dssp CCCSEE---EECGGGG-TTSSCEEEEEEH
T ss_pred CCCCee---eehhhhh-CCcceEEEEECH
Confidence 223433 8999998 499999998753
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-18 Score=152.83 Aligned_cols=210 Identities=14% Similarity=0.029 Sum_probs=127.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|...+.-|+ .++..++++.+++. ......| +.....+|++.+++++. ..+++++ ++|
T Consensus 51 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~--~~~~~~~-~~~~~~~la~~l~~~~~-------~~~~v~~--~~s 117 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGH-NHPAIRQAVIEAVE--RGLSFGA-PTEMEVKMAQLVTDLVP-------TMDMVRM--VNS 117 (429)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHT--TCSCCSS-CCHHHHHHHHHHHHHST-------TCSEEEE--ESS
T ss_pred CCCEEEECCCchhccccCC-CCHHHHHHHHHHHH--hCcccCC-CCHHHHHHHHHHHhhCC-------CCCEEEE--eCc
Confidence 4567899988874222232 23444444444444 2212223 44445567777777642 1378888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-HcC--C-----------------eeeEEEeecCCCCCcCHHHH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-AAG--L-----------------AMKTYHYYDPKTNGLDFQGM 179 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~~G--~-----------------~~~~v~~~~~~~~~~d~~~l 179 (280)
|++|++++.++......+++|++.+++|.++..... ..| . .+..++. .|++.+
T Consensus 118 Gsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 190 (429)
T 4e77_A 118 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASV 190 (429)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHHH
Confidence 999999994332222356899999999987654211 111 0 1111111 289999
Q ss_pred HHHHhcCCCCcEEEEecCCCCCCCCCCC--HHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 180 LQDLGAAPSGAIVLLQASGHNPTGIDPT--AQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~p~NPTG~~~~--~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
++++.+...+. .+++++|+||+|.++. .+.+++|.++|++||+++|+||+|.+| .... ... ....+...++
T Consensus 191 e~~l~~~~~~~-~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~--~~~-~~~~~~~pdi-- 263 (429)
T 4e77_A 191 RQAFEQYPQEV-ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL--AGA-QDYYHVIPDL-- 263 (429)
T ss_dssp HHHHHHSTTTE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT--TCH-HHHTTCCCSE--
T ss_pred HHHHHhcCCCE-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc--chH-HHhcCCCCCe--
Confidence 99998643333 4444667777665544 444999999999999999999999988 4221 111 1222222343
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.||||.++ +|+|+||+++.
T Consensus 264 -~t~sK~~~-~G~~~G~~~~~ 282 (429)
T 4e77_A 264 -TCLGKIIG-GGMPVGAFGGR 282 (429)
T ss_dssp -EEEEGGGG-TTSCCEEEEEC
T ss_pred -eeeccccc-CCCCeEEEEEC
Confidence 49999999 89999998864
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-18 Score=154.60 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCC---EEEEeCCCCCChH----HHHHHcCCee
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQH---TVYLSQPTYGNHP----NFFAAAGLAM 161 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd---~Vli~~P~y~~~~----~~~~~~G~~~ 161 (280)
..+++.+++++.. .+++|++ |+|++++++++ +.+++.+|+ +|+++.|+|+... ..++..|+++
T Consensus 114 ~~l~~~la~~~g~------~~~~v~~--t~g~t~al~~~--~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~ 183 (465)
T 3e9k_A 114 ESIVGLMKDIVGA------NEKEIAL--MNALTVNLHLL--MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNI 183 (465)
T ss_dssp HHHHGGGHHHHTC------CGGGEEE--CSCHHHHHHHH--HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHcCC------CcCCEEE--ECCHHHHHHHH--HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcc
Confidence 5688888888532 2478888 99999999999 777776665 5999999998743 3566789886
Q ss_pred eE--EEee-cCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 162 KT--YHYY-DPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 162 ~~--v~~~-~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
.. +... .++++.+|++.+++++.+++++.++|++++||||||.+++ +++|.++|+++|+++|+|+++.......
T Consensus 184 ~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~~~ 260 (465)
T 3e9k_A 184 EESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNVEL 260 (465)
T ss_dssp HHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCC
T ss_pred eeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCcCC
Confidence 32 2211 2345778999999999743234568999999999999998 4677889999999999999987544321
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+.+ .-+++.|++|.++....++|++++.
T Consensus 261 --------~~~~~~-~D~~~~s~~K~l~~gp~~~g~l~~~ 291 (465)
T 3e9k_A 261 --------YLHDWG-VDFACWCSYKYLNAGAGGIAGAFIH 291 (465)
T ss_dssp --------CHHHHT-CCEEEECSSSTTCCCTTCCCEEEEC
T ss_pred --------chhhcC-CCEEEECcccccccCCCceEEEEEc
Confidence 111122 2367899999994233389998874
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=155.18 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=98.0
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH---HHHHcC--CeeeEEEeecCCCCCcCHHHHHHHHh
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN---FFAAAG--LAMKTYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~---~~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
++|++ ++| ++|+.++ +.+++.+||+|+++.|+|..+.. .+...| ..++.++. + +++.+|++.+++++.
T Consensus 89 ~~i~~--~sG-t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~~~d~~~l~~~i~ 161 (417)
T 3n0l_A 89 ANVQP--NSG-SQANQGV--YAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV-E-LDGRIDYEKVREIAK 161 (417)
T ss_dssp EECCC--SSH-HHHHHHH--HHHHSCTTCEEEEECC----------------CCSEEEEECC-C-TTSSCCHHHHHHHHH
T ss_pred cceEe--ccH-HHHHHHH--HHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccC-C-CCCCcCHHHHHHHHH
Confidence 55665 666 8999999 77778999999999999977654 333334 34555555 3 567799999999998
Q ss_pred -cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccC-CCcccCcCCChhHHHHhhhcCCeEEEEeccc
Q 023599 185 -AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAY-QGFVMNMDADALPVRMFVADGGECLVAQSYS 262 (280)
Q Consensus 185 -~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 262 (280)
++++ +|++++|+| |.+++ +++|.++|++||+++|+||++ ..+.+..... ..+ ....+++.|+|
T Consensus 162 ~~~~~---~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~----~~~---~~~di~~~s~s 226 (417)
T 3n0l_A 162 KEKPK---LIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHP----SPF---PYAHVVSSTTH 226 (417)
T ss_dssp HHCCS---EEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC----CCT---TTCSEEEEESS
T ss_pred hcCCe---EEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCC----Ccc---ccceEEEeeCc
Confidence 4554 667777776 77777 778899999999999999995 3333321110 001 12347899999
Q ss_pred ccccccccccceEEEE
Q 023599 263 KTMGLYGERVGALSVV 278 (280)
Q Consensus 263 K~~~~~G~RvG~~v~~ 278 (280)
|.+ +|+|.||+++.
T Consensus 227 K~l--~g~~~G~~~~~ 240 (417)
T 3n0l_A 227 KTL--RGPRGGIIMTN 240 (417)
T ss_dssp TTT--CSCSCEEEEES
T ss_pred ccc--CCCCeeEEEEC
Confidence 988 79999999875
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=151.31 Aligned_cols=210 Identities=13% Similarity=0.029 Sum_probs=128.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...+||..|...+.-++ .++..++++.+.+. ......| +..-..+|++.+++++ . ..+++++ ++|
T Consensus 50 ~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~--~~~~~~~-~~~~~~~l~~~l~~~~-~------~~~~v~~--~~~ 116 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGH-AHPKVLARVRETLE--RGLTFGA-PSPLEVALAKKVKRAY-P------FVDLVRF--VNS 116 (424)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHH--TCSCCSS-CCHHHHHHHHHHHHHC-T------TCCEEEE--ESS
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHH--hCCCCCC-CCHHHHHHHHHHHHhC-C------CCCEEEE--eCC
Confidence 3456889988863222233 34444444445454 2211222 1112344555555552 1 2478888 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH-H-------------cCC------eeeEEEeecCCCCCcCHHHH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA-A-------------AGL------AMKTYHYYDPKTNGLDFQGM 179 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~-~-------------~G~------~~~~v~~~~~~~~~~d~~~l 179 (280)
|++|+.++.++...+..+++|++.+|+|.++..... . .|+ .+..++. .|++.+
T Consensus 117 g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~l 189 (424)
T 2e7u_A 117 GTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGL 189 (424)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHH
Confidence 999999983321123456889999999987543221 1 122 2233332 389999
Q ss_pred HHHHhcCCCCcEEEEecCCCCC-CCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 180 LQDLGAAPSGAIVLLQASGHNP-TGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~p~NP-TG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
++.+.+...+. .+++++|+|+ ||.++ +.+.+++|.++ ++||+++|+||+|.+|..+ .... ....+...++
T Consensus 190 e~~l~~~~~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g---~~~~-~~~~~~~~di-- 261 (424)
T 2e7u_A 190 REVLKRRGEEI-AAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA---FGGA-TELLGLKPDL-- 261 (424)
T ss_dssp HHHHHHHGGGE-EEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS---TTHH-HHHHTCCCSE--
T ss_pred HHHHHhCCCCE-EEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc---hhHH-HHHhCCCcch--
Confidence 99887421122 3444567665 89765 79999999999 9999999999999988332 1111 1222323343
Q ss_pred EecccccccccccccceEEEEc
Q 023599 258 AQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.||||.++ +|+|+||+++..
T Consensus 262 -~s~sK~l~-~G~~~G~~~~~~ 281 (424)
T 2e7u_A 262 -VTLGKILG-GGLPAAAYAGRR 281 (424)
T ss_dssp -EEECGGGG-TTSSCEEEEECH
T ss_pred -hhhhhhhh-CCcceEEEEEcH
Confidence 39999999 699999998753
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=158.06 Aligned_cols=204 Identities=10% Similarity=-0.012 Sum_probs=142.0
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcccc-------CCCeEEeecccchhHHHHHHHHHH
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIK-------ENRVSTVQCLSGSGSLRIGADFLA 132 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~-------~~~i~~v~t~g~~~al~~~~~~~~ 132 (280)
.++..+.++..... ......|....+..++++.+++++....+.+.. ..++++ |+||++|+.++ +.+
T Consensus 85 ~~~~~~~~~~~~~~--n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~--t~ggTeA~~~a--l~~ 158 (486)
T 1js3_A 85 SYPAMLADMLCGAI--GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVA--LLA 158 (486)
T ss_dssp CHHHHHHHHHHHHH--CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHH--HHH
T ss_pred CHHHHHHHHHHHHh--CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEE--cCCcHHHHHHH--HHH
Confidence 34445555555544 222455666667788888888876443332211 234556 99999999888 544
Q ss_pred hhc---C------CC----------EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCC---Cc
Q 023599 133 KHY---Y------QH----------TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPS---GA 190 (280)
Q Consensus 133 ~~~---~------Gd----------~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~---~~ 190 (280)
... + || .|+++.++|..+...++..|++++.+|. + +++.+|++.|++++.++++ .+
T Consensus 159 ~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~-d-~~~~~d~~~L~~~i~~~~~~g~~p 236 (486)
T 1js3_A 159 ARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS-D-GKFAMRASALQEALERDKAAGLIP 236 (486)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC-C-TTSCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeec-C-CCCCCCHHHHHHHHHHHHhCCCCc
Confidence 321 1 42 3888999999999999999999999998 3 5688999999999976532 23
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
.+|++++|+||||.+ +++++|+++|++||+++++|++|+.+.+....-...+..+ .+...+ ..|++|.+++| +
T Consensus 237 ~~vv~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~--~~adsi-~~~~hK~~~~p-~ 309 (486)
T 1js3_A 237 FFVVATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV--EFADSF-NFNPHKWLLVN-F 309 (486)
T ss_dssp EEEEEEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTG--GGCSEE-EECHHHHSSCC-S
T ss_pred eEEEEeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCc--cccCee-EEchhhhcCCC-c
Confidence 588889999999976 4578889999999999999999988654211011001111 123455 46889999865 9
Q ss_pred ccceEEEE
Q 023599 271 RVGALSVV 278 (280)
Q Consensus 271 RvG~~v~~ 278 (280)
++||+++.
T Consensus 310 ~~G~l~~~ 317 (486)
T 1js3_A 310 DCSAMWVK 317 (486)
T ss_dssp SCEEEEES
T ss_pred ceEEEEEe
Confidence 99999874
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-19 Score=160.83 Aligned_cols=156 Identities=10% Similarity=0.006 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccc-hhHHHHHHHHHHhhcC---CCEEEEeCCCCCChHHHHHHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSG-SGSLRIGADFLAKHYY---QHTVYLSQPTYGNHPNFFAAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~-~~al~~~~~~~~~~~~---Gd~Vli~~P~y~~~~~~~~~~G~~~~~ 163 (280)
..++++.+++++... .++++++ |+|+ ++|+.++ +.+++.+ ||.|+++.++|.. ...++..| +++.
T Consensus 50 ~~~l~~~la~~~g~~-----~~~~v~~--~~g~gt~al~~~--~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~ 118 (360)
T 1w23_A 50 HEQAQNLLRELLQIP-----NDYQILF--LQGGASLQFTML--PMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHI 118 (360)
T ss_dssp HHHHHHHHHHHHTCC-----TTEEEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEE
T ss_pred HHHHHHHHHHHhCCC-----CCceEEE--ECCcchHHHHHH--HHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEE
Confidence 456788888876321 2367877 9998 9999999 7777765 5667766655543 33456789 9999
Q ss_pred EEeecCCCCCcCHHHHHH-HHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 164 YHYYDPKTNGLDFQGMLQ-DLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~-~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
+++ +++++.+|++.+++ ++.++ .+++++++|+||||.+++ ++ +++||+++|+|++|..+.... +
T Consensus 119 v~~-~~~~~~~d~~~l~~~~i~~~---~k~v~~~~~~nptG~~~~--~i------~~~~~~~li~D~a~~~~~~~~--~- 183 (360)
T 1w23_A 119 AAS-TKANSYQSIPDFSEFQLNEN---DAYLHITSNNTIYGTQYQ--NF------PEINHAPLIADMSSDILSRPL--K- 183 (360)
T ss_dssp EEE-CGGGTSCSCCCGGGCCCCTT---EEEEEEESEETTTTEECS--SC------CCCCSSCEEEECTTTTTSSCC--C-
T ss_pred eec-ccccCcCCccchHhhccCCC---CCEEEEeCCCCCcceecc--cc------cccCCceEEEechhhcCCCCc--C-
Confidence 998 43233478888888 77443 348888999999999987 33 237999999999998765421 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+.+. . ++++|+||.|+++| +||+++..
T Consensus 184 -----~~~~--d-i~~~s~sK~~~~~G--~G~~~~~~ 210 (360)
T 1w23_A 184 -----VNQF--G-MIYAGAQKNLGPSG--VTVVIVKK 210 (360)
T ss_dssp -----GGGC--S-EEEEETTTTTSCTT--CEEEEEEH
T ss_pred -----cccC--C-EEEEEcccccCCCC--cEEEEEcH
Confidence 1111 2 78999999999666 99998763
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=152.31 Aligned_cols=222 Identities=12% Similarity=0.071 Sum_probs=143.0
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...|||..|...+.-|+ .++..++++.+++. .. .+ ++...+..++++++++++..... ...+++++ ++|
T Consensus 52 ~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~--~~-~~-~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~s 122 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGY-GRREIVDAMAHQAM--VL-PY-ASPWYMATSPAARLAEKIATLTP--GDLNRIFF--TTG 122 (476)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHH--HC-CC-CCTTTCBCHHHHHHHHHHHTTSS--TTCCEEEE--ESS
T ss_pred CCCEEEECCCchhhccCCC-CCHHHHHHHHHHHH--hc-cC-cccCccCCHHHHHHHHHHHhcCC--CCcCEEEE--eCc
Confidence 4567899988853222333 23444455555554 21 11 22224667788888888876643 23478888 999
Q ss_pred chhHHHHHHHHHHhh--------cCCCEEEEeCCCCCChHHHHHHcCCe-------------eeEEEeecC-CCCCcC--
Q 023599 120 GSGSLRIGADFLAKH--------YYQHTVYLSQPTYGNHPNFFAAAGLA-------------MKTYHYYDP-KTNGLD-- 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~--------~~Gd~Vli~~P~y~~~~~~~~~~G~~-------------~~~v~~~~~-~~~~~d-- 175 (280)
|++|++.+ +.... ..+++|++.+|+|.++.......+.. +..++.... ..+..|
T Consensus 123 GseA~~~A--ik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 200 (476)
T 3i5t_A 123 GSTAVDSA--LRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQE 200 (476)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHH
T ss_pred hHHHHHHH--HHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchH
Confidence 99999999 44433 23579999999998886655544332 122222000 001122
Q ss_pred ------HHHHHHHHhcCC-CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHH
Q 023599 176 ------FQGMLQDLGAAP-SGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRM 247 (280)
Q Consensus 176 ------~~~l~~~~~~~~-~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 247 (280)
++.|++.+.+.. .+.++|+++.++|++|. +++++.+++|.++|++||+++|+||+|.+|..... ......
T Consensus 201 ~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~--~~~~~~ 278 (476)
T 3i5t_A 201 AFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE--WFASEK 278 (476)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC--ceeeec
Confidence 788888886421 33457777778888886 88999999999999999999999999999865421 112221
Q ss_pred hhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 248 FVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 248 ~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
..+...+++ +|||.++ .| +|+||+++.
T Consensus 279 ~~~v~pdi~---t~sK~l~-~G~~plg~v~~~ 306 (476)
T 3i5t_A 279 VFGVVPDII---TFAKGVT-SGYVPLGGLAIS 306 (476)
T ss_dssp TTCCCCSEE---EECGGGG-TTSSCCEEEEEC
T ss_pred ccCCCcchh---hhhhhhc-CCCcCeEEEEEC
Confidence 222233444 6899998 59 999999875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=158.19 Aligned_cols=207 Identities=17% Similarity=0.139 Sum_probs=129.5
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCC------CCCCCCCHHHHHHHHHHHhCCCCccccC--CCeE
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKE------YLPITGLPEFNKLSAKLIFGADSPAIKE--NRVS 113 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~G~~~lr~~ia~~l~~~~~~~~~~--~~i~ 113 (280)
.+.|+|..++ + ++++.+.+++..... .....+ |....+..++++.+.+++....+..... .+|+
T Consensus 44 ~~~i~L~a~e----~---~~~~~V~eA~~~~l~-~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~ 115 (483)
T 1rv3_A 44 RVGLELIASE----N---FASRAVLEALGSCLN-NKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQ 115 (483)
T ss_dssp HSSEECCTTC----C---CCCHHHHHHHTSGGG-TCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECC
T ss_pred hcCeEEEcCC----C---CCCHHHHHHHHHHHh-ccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEE
Confidence 4679998776 3 233444444433332 111112 2222334556644444433222221111 2355
Q ss_pred EeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH--------HHHcC--CeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 114 TVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF--------FAAAG--LAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 114 ~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~--------~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
+ ++|+ +++.++ +.+++.|||+|++++|.|..+... +...| .+++.+++ +++++.+|++.+++++
T Consensus 116 ~--~sGs-~an~~~--~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~-~~~~~~iD~d~le~~i 189 (483)
T 1rv3_A 116 P--YSGS-PANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEENA 189 (483)
T ss_dssp C--SSHH-HHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHHH
T ss_pred E--CCcH-HHHHHH--HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc-ccCCCcCCHHHHHHHH
Confidence 4 6666 888887 778889999999999988776532 22334 34444444 4456889999999999
Q ss_pred h-cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecc
Q 023599 184 G-AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSY 261 (280)
Q Consensus 184 ~-~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 261 (280)
. .+++ +|++ +++||+ .+++ +++|.++|+++|+++|+|++|. .+.+.+. ...+ + + +. -+++.|+
T Consensus 190 ~~~~tk---lIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~-~~~p---~-~-~~-div~~s~ 254 (483)
T 1rv3_A 190 RLFHPK---LIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV-VPSP---F-E-HC-HVVTTTT 254 (483)
T ss_dssp HHHCCS---EEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-SCCG---G-G-TC-SEEEEES
T ss_pred hhcCCc---EEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCC-CCCC---C-C-CC-cEEEecC
Confidence 8 5555 6666 889998 7776 6788999999999999999975 3333211 1111 1 1 12 2678999
Q ss_pred cccccccccccceEEEEc
Q 023599 262 SKTMGLYGERVGALSVVR 279 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~~ 279 (280)
+|++ +|+|.||+++..
T Consensus 255 ~K~l--~GprgG~i~~~~ 270 (483)
T 1rv3_A 255 HKTL--RGCRAGMIFYRR 270 (483)
T ss_dssp SGGG--CCCSCEEEEEEC
T ss_pred cccC--CCCCceEEEEcc
Confidence 9987 599999999864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=149.82 Aligned_cols=223 Identities=10% Similarity=0.004 Sum_probs=137.2
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...|||..|...+.-|+. ++..++++.+++. .. .+.|....+..+.+.++++.+..... ...+++++ ++|
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~--~~-~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~--~~s 124 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYG-RDELAEVAARQMR--EL-PYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFF--AGG 124 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBC-CHHHHHHHHHHHH--HC-SCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEE--ESS
T ss_pred CCCEEEECCCchhhccCCCC-CHHHHHHHHHHHH--hc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEE--eCC
Confidence 34678999888432333432 4445555555554 21 12233333334444455554433221 12468888 999
Q ss_pred chhHHHHHHHHHHhhc--------CCCEEEEeCCCCCChHHHHHHcCC------------eeeEEEeec--C-CCCCcC-
Q 023599 120 GSGSLRIGADFLAKHY--------YQHTVYLSQPTYGNHPNFFAAAGL------------AMKTYHYYD--P-KTNGLD- 175 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~--------~Gd~Vli~~P~y~~~~~~~~~~G~------------~~~~v~~~~--~-~~~~~d- 175 (280)
|++|++.+ +..... ++++|++.+|+|.++.......+. .+..++... . .++ .|
T Consensus 125 GseA~~~a--ik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~ 201 (472)
T 3hmu_A 125 GSEANDTN--IRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDP 201 (472)
T ss_dssp HHHHHHHH--HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCH
T ss_pred HHHHHHHH--HHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCH
Confidence 99999999 444333 458999999999887655554433 233444310 0 111 23
Q ss_pred -------HHHHHHHHhcCC-CCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 176 -------FQGMLQDLGAAP-SGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 176 -------~~~l~~~~~~~~-~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
++.|++.+.+.. .+.++|+++.++|++|.+. +++.+++|.++|++||+++|+||+|.+|..... ....
T Consensus 202 ~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~a~- 278 (472)
T 3hmu_A 202 EEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN--WFGT- 278 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHH-
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc--cchh-
Confidence 788888886421 2345666666677778755 888899999999999999999999999865321 1112
Q ss_pred HhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
...+...+++ +|||.++..|+|+||+++..
T Consensus 279 ~~~~v~pdi~---t~sK~l~gg~~plG~v~~~~ 308 (472)
T 3hmu_A 279 QTMGIRPHIM---TIAKGLSSGYAPIGGSIVCD 308 (472)
T ss_dssp HHHTCCCSEE---EECGGGTTTSSCCEEEEEEH
T ss_pred HHhCCCCcee---eechhhhcCCcceEEEEECH
Confidence 2223334544 68999985559999998753
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=155.47 Aligned_cols=142 Identities=19% Similarity=0.126 Sum_probs=95.9
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC---hHHHHHHcCC--eeeEEEeecCCCCCcCHHHHHHHHhc-CCCCc
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN---HPNFFAAAGL--AMKTYHYYDPKTNGLDFQGMLQDLGA-APSGA 190 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~---~~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~ 190 (280)
++||++|+.++ +.+++.+||+|+++.|+|.. +.......|. +++.++. +++++.+|++.+++++.+ +++
T Consensus 100 ~~~Gs~a~~~a--l~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~~~~~-- 174 (425)
T 3ecd_A 100 PHSGAQANGAV--MLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGV-SRDTMLIDYDQVEALAQQHKPS-- 174 (425)
T ss_dssp CSSHHHHHHHH--HHHHCCTTCEEEEECC------------------CEEEEECC-CTTTSSCCHHHHHHHHHHHCCS--
T ss_pred cCchHHHHHHH--HHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCC-CcccCccCHHHHHHHHhhcCCc--
Confidence 88889999998 77778999999999999977 3322223454 4455655 445688999999999974 444
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 269 (280)
++++++|+||+. .++++|.++|++||++||+||+|. .+.+... ... .+ +. --++++|+||.+ +|
T Consensus 175 -~v~~~~~~~~~~-----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~-~~~---~~-~~--~di~~~s~sK~l--~g 239 (425)
T 3ecd_A 175 -LIIAGFSAYPRK-----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGR-HAN---PV-EH--AHVVTSTTHKTL--RG 239 (425)
T ss_dssp -EEEEECSCCCSC-----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCC---GG-GT--CSEEEEESSGGG--CC
T ss_pred -EEEEccccCCCc-----CCHHHHHHHHHHcCCEEEEECcChHhhhhccc-ccC---ch-hc--CcEEEecCCccc--CC
Confidence 777788999853 346788999999999999999953 3333321 110 11 11 127799999988 68
Q ss_pred cccceEEEE
Q 023599 270 ERVGALSVV 278 (280)
Q Consensus 270 ~RvG~~v~~ 278 (280)
+|+||+++.
T Consensus 240 ~~~g~~~~~ 248 (425)
T 3ecd_A 240 PRGGFVLTN 248 (425)
T ss_dssp CSCEEEEES
T ss_pred CCcEEEEeC
Confidence 899999875
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=153.71 Aligned_cols=202 Identities=12% Similarity=0.044 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhc------
Q 023599 62 LNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY------ 135 (280)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~------ 135 (280)
...+.++..... ......|....+..++++.+++|+....+.+...+++++ |+||++|+..+ +.+...
T Consensus 109 ~~~~~e~l~~~~--~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~--t~ggt~a~~~a--l~~a~~~~~~~~ 182 (511)
T 3vp6_A 109 IGLAGEWLTSTA--NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYS--IMAARYKYFPEV 182 (511)
T ss_dssp HHHHHHHHHHHH--CCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHH--HHHHHHHHCTHH
T ss_pred HHHHHHHHHHHh--ccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEE--CCchHHHHHHH--HHHHHHHhhhhh
Confidence 334444444333 222456877788889999998886554333322356666 99999999888 554433
Q ss_pred --------CCCEEEEeCCCCCChHHHHHHcCC---eeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCC
Q 023599 136 --------YQHTVYLSQPTYGNHPNFFAAAGL---AMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNP 201 (280)
Q Consensus 136 --------~Gd~Vli~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NP 201 (280)
+++.|+++.+.|..+...++.+|+ +++.++. + +++.+|++.|++++.+. ...+.+|+.++++||
T Consensus 183 ~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~-d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~ 260 (511)
T 3vp6_A 183 KTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC-N-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTV 260 (511)
T ss_dssp HHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB-C-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSS
T ss_pred hhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeec-C-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCC
Confidence 567999999999999999999998 8889987 3 45789999999999754 122568899999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhh-cCCeEEEEecccccccccccccceEEEEc
Q 023599 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVA-DGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 202 TG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
||.+ +++++|+++|++||+|+++|++|.....-...-. ..+.. .....+ +.+++|.++.| ..+|++++.+
T Consensus 261 ~G~v---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~---~~~~g~~~aDsv-~~~~hK~l~~p-~g~g~l~~~~ 331 (511)
T 3vp6_A 261 YGAF---DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR---HKLNGIERANSV-TWNPHKMMGVL-LQCSAILVKE 331 (511)
T ss_dssp SCCB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG---GGGTTGGGCSEE-EECTTSTTCCC-SCCEEEEESS
T ss_pred Cccc---ccHHHHHHHHHHcCCEEEEEccchhhHhhChhhh---hhccCCccCCEE-EECcccccCCC-cCeEEEEEeC
Confidence 9998 4578889999999999999999987655211001 11111 112344 57999999855 7888887753
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=150.91 Aligned_cols=216 Identities=12% Similarity=0.050 Sum_probs=131.5
Q ss_pred CCCeeEeecceeecCCCCccchHHH-H-HHHH---HHhccCCCCCCCC---CCCCCHHHHHHHHHHHhCCCCccccCCCe
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAV-R-QAEQ---LLVNDLSADKEYL---PITGLPEFNKLSAKLIFGADSPAIKENRV 112 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~~~~~y~---~~~G~~~lr~~ia~~l~~~~~~~~~~~~i 112 (280)
+...+||..|.+...-++ .++..+ + ++.+ ++. .. ..|. +.....+|++.+++++.. ...++|
T Consensus 53 g~~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~~~~~~--~~--~~~~~~~~~~~~~~la~~la~~~~~-----~~~~~v 122 (449)
T 2cjg_A 53 GRRYLDMFTFVASSALGM-NPPALVDDREFHAELMQAA--LN--KPSNSDVYSVAMARFVETFARVLGD-----PALPHL 122 (449)
T ss_dssp CCEEEESSHHHHTCSSCB-SCHHHHTCHHHHHHHHHHH--TC--CCCTTTCCCHHHHHHHHHHHHHHCC-----TTCCEE
T ss_pred CcEEEEccCCccccCCCC-CCHHHHHHHHHHHHHHHHH--hc--CCCCcccCCHHHHHHHHHHHHhcCC-----CCCCEE
Confidence 446788877763122222 133344 4 4444 444 22 1122 222235677777777531 234788
Q ss_pred EEeecccchhHHHHHHHHHH-hhc-----------CCCEEEEeCCCCCChHHHHHH---------cCC-----eeeEEEe
Q 023599 113 STVQCLSGSGSLRIGADFLA-KHY-----------YQHTVYLSQPTYGNHPNFFAA---------AGL-----AMKTYHY 166 (280)
Q Consensus 113 ~~v~t~g~~~al~~~~~~~~-~~~-----------~Gd~Vli~~P~y~~~~~~~~~---------~G~-----~~~~v~~ 166 (280)
++ |+||++|++.+..+.. ... +||+|++.+|+|.++...... .+. .+..+|.
T Consensus 123 ~~--~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (449)
T 2cjg_A 123 FF--VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY 200 (449)
T ss_dssp EE--ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCC
T ss_pred EE--eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcC
Confidence 88 9999999999943221 122 289999999999876442211 122 3455554
Q ss_pred ecCCCC--------CcCHHHHHHHHhcCCCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 167 YDPKTN--------GLDFQGMLQDLGAAPSGAIVLLQASGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 167 ~~~~~~--------~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
.++... ..+++.|++.+.+.+.+.++|+++..+|||| .+++++++++|.++|++||+++|+||+|.++...
T Consensus 201 ~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~ 280 (449)
T 2cjg_A 201 MRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLT 280 (449)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred CCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCcc
Confidence 110011 1355668888864323344666555579999 4999999999999999999999999999988664
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.. .... ...+...+++ +|||.+ |+||+++..
T Consensus 281 g~--~~~~-~~~~~~~di~---t~sK~l-----~iG~~~~~~ 311 (449)
T 2cjg_A 281 GT--AWAY-QQLDVAPDIV---AFGKKT-----QVCGVMAGR 311 (449)
T ss_dssp SS--SSTH-HHHTCCCSEE---EECGGG-----SSEEEEECG
T ss_pred Cc--ceee-cccCCCceEE---EecCcc-----cEEEEEECH
Confidence 22 1111 1223333443 789987 899998753
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=152.43 Aligned_cols=187 Identities=13% Similarity=0.045 Sum_probs=132.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh--------cCC-----C-EEEEeCC
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH--------YYQ-----H-TVYLSQP 145 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~--------~~G-----d-~Vli~~P 145 (280)
..|....+...+++.+.+++....+.+...+++++ |+||++|+.++ +.+.. .+| + +|+++.+
T Consensus 122 ~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~--t~ggtea~~~a--l~~~~~~~~~~~~~~G~~~~~~~~v~~s~~ 197 (504)
T 2okj_A 122 FTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIF--SPGGAISNMYS--IMAARYKYFPEVKTKGMAAVPKLVLFTSEQ 197 (504)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEE--ESSHHHHHHHH--HHHHHHHHCTTHHHHCGGGSCCEEEEEETT
T ss_pred CchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEE--eCCcHHHHHHH--HHHHHHHHhhHHhhcCccccCCeEEEECCc
Confidence 34555555556666665554322222112467777 99999999998 55443 256 6 7999999
Q ss_pred CCCChHHHHHHcCC---eeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH
Q 023599 146 TYGNHPNFFAAAGL---AMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMR 219 (280)
Q Consensus 146 ~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~ 219 (280)
.|..+...++.+|. +++.+|. + +++.+|++.|++++.+. ..++.+|++++|+||||.+.+ +++|+++|+
T Consensus 198 ~h~s~~~~~~~~g~g~~~v~~v~~-~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~ 272 (504)
T 2okj_A 198 SHYSIKKAGAALGFGTDNVILIKC-N-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICE 272 (504)
T ss_dssp SCTHHHHHHHHTTSCGGGEEEECB-C-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHH
T ss_pred chHHHHHHHHHcCCCcccEEEEec-C-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHH
Confidence 99999999888877 8899998 3 46789999999999752 123568899999999999865 667789999
Q ss_pred hCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 220 LKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 220 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++|+++++|++|..+......-...+..+ .... +++.|++|.++.| .++||+++.+
T Consensus 273 ~~g~~lhvD~a~~~~~~~~~~~~~~~~g~--~~~D-~i~~~~hK~~~~p-~~~g~l~~~~ 328 (504)
T 2okj_A 273 KYNLWLHVDAAWGGGLLMSRKHRHKLNGI--ERAN-SVTWNPHKMMGVL-LQCSAILVKE 328 (504)
T ss_dssp HHTCEEEEEETTGGGGGGCTTTGGGGTTG--GGCS-EEEECTTSTTCCC-SCCEEEEESS
T ss_pred HcCCEEEEehhhhhHHHhCHhhHhhcCCc--ccCC-EEEECchhhcCCC-cceEEEEEEC
Confidence 99999999999988875311111111111 1234 4577899999865 7999998754
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=153.34 Aligned_cols=134 Identities=13% Similarity=-0.038 Sum_probs=97.6
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeeeEEEeecCCCCC--cCHHHHHHHHhcCCCCcEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMKTYHYYDPKTNG--LDFQGMLQDLGAAPSGAIV 192 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~--~d~~~l~~~~~~~~~~~~~ 192 (280)
|+|+++++.++ +.+++.+||+|+++++.+..+ ...++..| +++.++...+++++ +|.+.++ +.+ +.++
T Consensus 74 t~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~---~t~~ 145 (362)
T 2c0r_A 74 QGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD---NAAY 145 (362)
T ss_dssp SSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT---TEEE
T ss_pred CCCchHHHHHH--HHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC---CcCE
Confidence 89999999999 788889999999887764432 35667789 99999983112233 4665543 433 3458
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccccc
Q 023599 193 LLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 193 v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv 272 (280)
+++++|+||||.+++ ++++| +|+++++|++|..+.... .+.+. + +++.|+||.+|++| +
T Consensus 146 v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~~--------~~~~~--d-~~~~s~~K~~g~~G--~ 204 (362)
T 2c0r_A 146 LHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRPF--------DLNQF--G-LVYAGAQKNLGPSG--V 204 (362)
T ss_dssp EEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSSCC--------CGGGC--S-EEEEETTTTTCCSS--C
T ss_pred EEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCCcc--------chhHC--c-EEEEeccccccCcC--c
Confidence 899999999999755 35554 899999999998764421 12122 3 67889999999888 9
Q ss_pred ceEEEEc
Q 023599 273 GALSVVR 279 (280)
Q Consensus 273 G~~v~~~ 279 (280)
||+++..
T Consensus 205 G~l~~~~ 211 (362)
T 2c0r_A 205 TVVIVRE 211 (362)
T ss_dssp EEEEEEG
T ss_pred EEEEEcH
Confidence 9998864
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-18 Score=155.42 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=103.9
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH-----HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc-CCCCc
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN-----FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA-APSGA 190 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~-----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~ 190 (280)
++||++|+..+ +.+++.+||+|++++|+|..+.. .+...+..++.+++ +++++.+|++.+++++.+ +++
T Consensus 113 ~~sGs~a~~~a--~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~~~~~-- 187 (447)
T 3h7f_A 113 PHSGAQANAAV--LHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGV-DPATHLIDMDAVRATALEFRPK-- 187 (447)
T ss_dssp CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECC-CTTTCSCCHHHHHHHHHHHCCS--
T ss_pred eCCHHHHHHHH--HHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCc-CcccCCcCHHHHHHHHHhcCCe--
Confidence 77788999988 77888999999999999877311 11223445666666 445678999999999964 344
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 269 (280)
++++++|+||++. ++++|.++|+++|+++|+||+|. .+.+...... .+ + ... +++.|+||+++ |
T Consensus 188 -~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~----~~-~-~~d-i~~~s~sK~l~--G 252 (447)
T 3h7f_A 188 -VIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS----PV-P-HAD-VVSTTVHKTLG--G 252 (447)
T ss_dssp -EEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC----ST-T-TCS-EEEEESSGGGC--C
T ss_pred -EEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC----CC-C-CCc-EEEecCCcCCC--C
Confidence 7777889999986 68899999999999999999963 3333211110 01 1 112 66999999874 8
Q ss_pred cccceEEEE
Q 023599 270 ERVGALSVV 278 (280)
Q Consensus 270 ~RvG~~v~~ 278 (280)
+|.||++..
T Consensus 253 ~~gG~i~~~ 261 (447)
T 3h7f_A 253 GRSGLIVGK 261 (447)
T ss_dssp CSCEEEEEC
T ss_pred CCeEEEEEC
Confidence 999999865
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=153.03 Aligned_cols=169 Identities=9% Similarity=-0.015 Sum_probs=120.3
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCee
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAM 161 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~ 161 (280)
|.+.....++++.+++ + +. .+++++ |+|+++++.++ +.+++.+||+|+++.|+|..+...+...|+++
T Consensus 53 ~~~~~~~~~~~~~la~-~-g~------~~~v~~--~~G~t~a~~~~--~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~ 120 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-H-SD------YDGYFL--VNGTTSGILSV--IQSFSQKKGDILMARNVHKSVLHALDISQQEG 120 (446)
T ss_dssp TSCSSHHHHHHHHHCS-C-TT------EEEEEE--SSHHHHHHHHH--HHTTTTSSSCEEECTTCCHHHHHHHHHHTCCE
T ss_pred cCcchHHHHHHHHHHh-c-CC------CceEEE--eCCHHHHHHHH--HHHhcCCCCEEEEecCccHHHHHHHHHcCCeE
Confidence 5555566788888887 4 22 156666 99999999999 78888999999999999999999999999999
Q ss_pred eEEEeecCCC----CCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC-ccc
Q 023599 162 KTYHYYDPKT----NGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG-FVM 236 (280)
Q Consensus 162 ~~v~~~~~~~----~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~-~~~ 236 (280)
++++....++ +.+|++.+ ..++++ ++++++ +|+||.+++ +++|+++|+++|+++|+||+|.. +.|
T Consensus 121 ~~v~~~~~~~~~~~~~~d~~~l---~~~~~~---~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 121 HFIETHQSPLTNHYNKVNLSRL---NNDGHK---LVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EECEEEECTTTSSEEEEEC----------CC---EEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred EEEeCeeccccCcCCCCCHHHH---cCCCce---EEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 9988732222 45788877 333333 667777 566999988 56789999999999999999987 334
Q ss_pred CcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 237 NMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
... . .+....+.+ +++.|+||+++ ++.++||+++..
T Consensus 191 ~~~--~---~~~~~~g~D-i~~~S~~K~l~-~~~g~g~l~~~~ 226 (446)
T 2x3l_A 191 QGF--P---DSTLNYQAD-YVVQSFHKTLP-ALTMGSVLYIHK 226 (446)
T ss_dssp TTS--C---CCGGGGTCS-EEEECHHHHSS-SCTTCEEEEEET
T ss_pred CCC--C---CChHHcCCC-EEEECCccccc-cccccEEEEEcC
Confidence 321 1 111122223 88999999664 445689998754
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-17 Score=148.87 Aligned_cols=202 Identities=12% Similarity=0.000 Sum_probs=135.4
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCe-EEeecccchhHHHHHHHHHHhhcC--
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRV-STVQCLSGSGSLRIGADFLAKHYY-- 136 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i-~~v~t~g~~~al~~~~~~~~~~~~-- 136 (280)
++.+.+.+++..... .....|....+..++++.+.+++....+.+..++++ .-+.|+||++++.++ +++...+
T Consensus 67 ~~~~~v~~~l~~~~~--~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a--~~a~~~~~~ 142 (502)
T 3hbx_A 67 WMEPECDKLIMSSIN--KNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLA--GLAFKRKWQ 142 (502)
T ss_dssp CCCHHHHHHHHHTTT--CBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHH--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--cCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHH--HHHHHHHHh
Confidence 344555555544331 112233333445566666555543333322112333 323489999999988 6655444
Q ss_pred ------CC-----EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCC
Q 023599 137 ------QH-----TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGID 205 (280)
Q Consensus 137 ------Gd-----~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~ 205 (280)
|+ +|+++.++|..+...++..|++++.+++ +++++.+|++.+++++.+++ .+|++++|+||||.+
T Consensus 143 ~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~~t---~~v~~~~~~n~tG~~ 218 (502)
T 3hbx_A 143 NKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKL-SEGYYVMDPQQAVDMVDENT---ICVAAILGSTLNGEF 218 (502)
T ss_dssp HHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECC-BTTBCSCCHHHHHHHCCTTE---EEEEEEBSCTTTCCB
T ss_pred HHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEec-CCCcCcCCHHHHHHHHhhCC---EEEEEecCCCCCCcc
Confidence 76 9999999999999999999999999998 45558899999999997654 488889999999998
Q ss_pred CCHHHHHHHHHHHHhC------CceeEEcccCCCccc---CcCCChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 206 PTAQQWEQIRQLMRLK------RLLPFFDCAYQGFVM---NMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 206 ~~~~~l~~i~~~~~~~------~~~ii~De~y~~~~~---~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
.+ +++|.++|+++ ++++++|++|..+.. .+... ..+ ....--.+..|..|.++ ++.++||++
T Consensus 219 ~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~----~~~-~~~~~D~v~~s~hK~l~-~p~g~G~~~ 289 (502)
T 3hbx_A 219 ED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE----WDF-RLPLVKSINVSGHKYGL-VYAGIGWVI 289 (502)
T ss_dssp CC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC----CST-TSTTEEEEEEETTTTTC-CCSSCEEEE
T ss_pred cC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc----ccc-CCCCceEEEECcccccC-CCCCeEEEE
Confidence 76 55667788888 999999999987642 11100 001 11122345668888764 789999988
Q ss_pred EE
Q 023599 277 VV 278 (280)
Q Consensus 277 ~~ 278 (280)
+.
T Consensus 290 ~~ 291 (502)
T 3hbx_A 290 WR 291 (502)
T ss_dssp ES
T ss_pred Ee
Confidence 75
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=148.48 Aligned_cols=202 Identities=13% Similarity=0.095 Sum_probs=135.3
Q ss_pred ccchH-HHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHH----h
Q 023599 59 PLLLN-AVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLA----K 133 (280)
Q Consensus 59 ~~~~~-~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~----~ 133 (280)
+...+ .+.+....... . ....|....+..++.+.+.+++....+.+ ..+++++ |+||++|+.++ +.. .
T Consensus 110 ~~~~~~v~~~~~~~~~n-~-~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~--t~ggt~a~~~a--l~~ar~~~ 182 (497)
T 2qma_A 110 PPLMPAVAAEAMIAALN-Q-SMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIF--TSGGTQSNQMG--LMLARDWI 182 (497)
T ss_dssp CCBHHHHHHHHHHHHHC-C-CTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEE--ESSHHHHHHHH--HHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhc-c-cccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEE--cCCchHHHHHH--HHHHHHHH
Confidence 34444 44444444431 2 23345444455666666555543322221 1266777 99999999988 443 1
Q ss_pred h---------cC------CC-EEEEeCCCCCChHHHHHHcCC---eeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcE
Q 023599 134 H---------YY------QH-TVYLSQPTYGNHPNFFAAAGL---AMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAI 191 (280)
Q Consensus 134 ~---------~~------Gd-~Vli~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~ 191 (280)
+ .+ |+ .|+++.+.|..+...++..|. +++.+|. + +++.+|++.|++++.++ ..++.
T Consensus 183 ~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~-~-~~~~~d~~~L~~~i~~~~~~~~~~~ 260 (497)
T 2qma_A 183 ADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDA-N-ADGTMDITKLDEVIAQAKAEGLIPF 260 (497)
T ss_dssp HHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB-C-TTSSBCGGGHHHHHHHHHHTTCEEE
T ss_pred HHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEec-C-CCCcCCHHHHHHHHHHHHHCCCcce
Confidence 2 12 46 899999999988888888876 7899998 3 46789999999999754 12244
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEeccccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~ 270 (280)
+|+.++++||||.+-+ +++|+++|++||+++++|++|..+..... .. ..+.+. ... +++.|++|.++.| .
T Consensus 261 ~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~--~~~~gi~~~D-~i~~s~hK~l~~p-~ 331 (497)
T 2qma_A 261 AIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS--HK--SRLKGVERAH-SISVDFHKLFYQT-I 331 (497)
T ss_dssp EEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST--TG--GGGTTGGGCS-EEEEETTTTTCCC-S
T ss_pred EEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc--ch--HhhcCcccCC-EEEEcchhccCCC-c
Confidence 7888899999998655 67788999999999999999988876321 10 011111 223 4577899999855 7
Q ss_pred ccceEEEE
Q 023599 271 RVGALSVV 278 (280)
Q Consensus 271 RvG~~v~~ 278 (280)
++||+++.
T Consensus 332 ~~G~l~~~ 339 (497)
T 2qma_A 332 SCGALLVN 339 (497)
T ss_dssp SCEEEEES
T ss_pred ceEEEEEe
Confidence 99999875
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=142.57 Aligned_cols=148 Identities=12% Similarity=0.068 Sum_probs=112.9
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh------
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK------ 133 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~------ 133 (280)
.+++.+++..+.+. . ..|++..+..+|++++++++.. +++++ +++|++|+.++ +.++
T Consensus 13 ~~~~~~~a~~~~~~--~---~~~~~~~~~~~l~~~la~~~~~--------~~~i~--~~sGt~a~~~a--l~~~~~~~~~ 75 (390)
T 3b8x_A 13 WDDLEYKAIQSVLD--S---KMFTMGEYVKQYETQFAKTFGS--------KYAVM--VSSGSTANLLM--IAALFFTKKP 75 (390)
T ss_dssp CCHHHHHHHHHHHH--H---TCCSSCHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHTTSSSSC
T ss_pred CCHHHHHHHHHHHH--c---CCCCCChHHHHHHHHHHHHHCC--------CcEEE--ECCHHHHHHHH--HHHHHhhhhc
Confidence 44445554444443 1 2466677889999999999742 23444 78888999999 7776
Q ss_pred -hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHH
Q 023599 134 -HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWE 212 (280)
Q Consensus 134 -~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~ 212 (280)
+.+||+|+++.|+|..+...++..|++++.++. +++++.+|++.+++++.+++ .+|+++| ++|.. .+++
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~~~~---~~v~~~~---~~g~~---~~~~ 145 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDI-DINTLNIDIESLKEAVTDST---KAILTVN---LLGNP---NNFD 145 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHHHHCCTTE---EEEEEEC---GGGCC---CCHH
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEec-CccccCcCHHHHHHHhCcCC---eEEEEEC---CccCh---hhHH
Confidence 678999999999999999999999999999998 55568899999999987543 3555543 44443 3578
Q ss_pred HHHHHHHhCCceeEEcccCCCc
Q 023599 213 QIRQLMRLKRLLPFFDCAYQGF 234 (280)
Q Consensus 213 ~i~~~~~~~~~~ii~De~y~~~ 234 (280)
+|.++|+++|+++|+|++|...
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g 167 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMG 167 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTT
T ss_pred HHHHHHHHcCCEEEEECcCccc
Confidence 8899999999999999999854
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=146.42 Aligned_cols=154 Identities=10% Similarity=-0.004 Sum_probs=112.4
Q ss_pred eEEeecccchh-HHHHHHHHHHhhc--CCCEEEEeCCCCCChHHHHHHcCCeeeEEEeec-CCCCCcCHHHHHHHH-hc-
Q 023599 112 VSTVQCLSGSG-SLRIGADFLAKHY--YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYD-PKTNGLDFQGMLQDL-GA- 185 (280)
Q Consensus 112 i~~v~t~g~~~-al~~~~~~~~~~~--~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~~-~~- 185 (280)
+++ |+|+++ ++.++ +.++.. +|+.|+++++.|..+...++..|++++.++... ++++.+|++.+++++ ++
T Consensus 152 ~~~--t~g~te~a~~~a--l~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~ 227 (456)
T 2z67_A 152 AIA--TPISTGMSISLC--LSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEI 227 (456)
T ss_dssp EEE--ESSCHHHHHHHH--HHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHH
T ss_pred EEE--eCcHHHHHHHHH--HHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHh
Confidence 666 999994 55444 333322 678899999999999998999999999888632 345789999999999 43
Q ss_pred -CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 186 -APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 186 -~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
++ +.++++.++||||||.+.+ +++|.++|+++|+++++|++|..+.... .......+ ..+.++ ++.|++|.
T Consensus 228 ~~~-~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~--~~~~~~~~-~~~~D~-~~~s~hK~ 299 (456)
T 2z67_A 228 ELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY--LEKLKKAF-KYRVDA-VVSSSDKN 299 (456)
T ss_dssp HTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH--HHHHHHHH-TSCCSE-EEEEHHHH
T ss_pred hCC-CeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh--hHHHHHhh-CCCCCE-EEEcCCCC
Confidence 22 4557778999999999865 5677888999999999999998876521 00011111 113444 57899997
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
++ .++++||+++.
T Consensus 300 ~~-~p~g~G~l~~~ 312 (456)
T 2z67_A 300 LL-TPIGGGLVYST 312 (456)
T ss_dssp HC-CCSSCEEEEES
T ss_pred cC-CCCCeEEEEEc
Confidence 65 67999999873
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=145.29 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=129.4
Q ss_pred CCCCCCCCCHHHH----HHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh-------c-CCC------EEE
Q 023599 80 KEYLPITGLPEFN----KLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH-------Y-YQH------TVY 141 (280)
Q Consensus 80 ~~y~~~~G~~~lr----~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~-------~-~Gd------~Vl 141 (280)
..|...++..++. +.+++++. . ..+++++ |+||++|+.++ +.... . +|+ +|+
T Consensus 138 ~~~~~s~~~~~le~~~~~~la~l~g-~-----~~~~~~~--t~ggtea~~~a--l~~ar~~~~~~~~~~G~~~~~~~~vl 207 (515)
T 2jis_A 138 YTYEIAPVFVLMEEEVLRKLRALVG-W-----SSGDGIF--CPGGSISNMYA--VNLARYQRYPDCKQRGLRTLPPLALF 207 (515)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHHHHT-C-----SSCEEEE--ESSHHHHHHHH--HHHHHHHHCTTHHHHCGGGSCCEEEE
T ss_pred CchhhchHHHHHHHHHHHHHHHHhC-C-----CCCCeEE--cCCcHHHHHHH--HHHHHHHHhhHHhhcCccccCCeEEE
Confidence 3455555544444 44555542 1 1367777 99999998888 44431 2 576 899
Q ss_pred EeCCCCCChHHHHHHcCC---eeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHH
Q 023599 142 LSQPTYGNHPNFFAAAGL---AMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIR 215 (280)
Q Consensus 142 i~~P~y~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~ 215 (280)
++.+.|..+...++.+|. +++.+|. + +++.+|++.|++++.+. ..++.+|++++|+||||.+.+ +++|.
T Consensus 208 ~s~~~h~s~~~~~~~~g~g~~~v~~v~~-~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~ 282 (515)
T 2jis_A 208 TSKECHYSIQKGAAFLGLGTDSVRVVKA-D-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIA 282 (515)
T ss_dssp EETTSCTHHHHHHHHTTSCGGGEEEECB-C-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHH
T ss_pred ECCCccHHHHHHHHHcCCCCCcEEEEec-C-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHH
Confidence 999999999998888888 8999998 3 46789999999999752 123568888999999999876 66778
Q ss_pred HHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEecccccccccccccceEEEEc
Q 023599 216 QLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 216 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++|+++|+++++|++|..+......-.. .+.+. +.. +++.|++|.++. +.++|++++..
T Consensus 283 ~la~~~g~~l~vD~a~~~~~~~~~~~~~---~~~g~~~aD-~v~~s~hK~l~~-p~g~G~l~~~~ 342 (515)
T 2jis_A 283 DVCQRHGLWLHVDAAWGGSVLLSQTHRH---LLDGIQRAD-SVAWNPHKLLAA-GLQCSALLLQD 342 (515)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGCTTTGG---GGTTGGGCS-EEEECTTSTTCC-CSCCEEEEESC
T ss_pred HHHHHcCCeEEEehhhhhHHHhChhhHh---hcCCCccCC-EEEECcccccCC-CCCeeEEEEeC
Confidence 9999999999999999888763211111 11111 223 568899999874 46899998753
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=146.72 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=98.1
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH---HHHHH--cCCeeeEEEeecCCCCCcCHHHHHHHHh
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP---NFFAA--AGLAMKTYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~---~~~~~--~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
+++++ ++| ++++.++ +.+++.+||+|+++.|+|..+. ..+.. .+...+.++. ++++.+|++.+++++.
T Consensus 94 ~~v~~--~sG-s~a~~~a--~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~~~l~~~i~ 166 (420)
T 3gbx_A 94 ANVQP--HSG-SQANFAV--YTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI--DESGKIDYDEMAKLAK 166 (420)
T ss_dssp EECCC--SSH-HHHHHHH--HHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEE--CTTCSCCHHHHHHHHH
T ss_pred ceeEe--cCc-HHHHHHH--HHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccC--CccCCcCHHHHHHHHH
Confidence 55543 555 8899998 7788899999999999997643 22222 2334555665 3557799999999998
Q ss_pred cC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 185 AA-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 185 ~~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
++ ++ ++++++|+||+ ..+ +++|.++|++||+++|+||+|........... .... ..-++++|+||
T Consensus 167 ~~~~~---~v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~----~~~~--~~di~~~s~sK 232 (420)
T 3gbx_A 167 EHKPK---MIIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYP----NPVP--HAHVVTTTTHK 232 (420)
T ss_dssp HHCCS---EEEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSC----CSTT--TSSEEEEESSG
T ss_pred hcCCe---EEEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCC----cccc--cCCEEEeeccc
Confidence 64 44 77888899985 344 77889999999999999999754332111100 0011 13388999999
Q ss_pred cccccccccceEEEE
Q 023599 264 TMGLYGERVGALSVV 278 (280)
Q Consensus 264 ~~~~~G~RvG~~v~~ 278 (280)
.++ |.|.||++..
T Consensus 233 ~~~--g~~gg~~~~~ 245 (420)
T 3gbx_A 233 TLA--GPRGGLILAK 245 (420)
T ss_dssp GGC--SCSCEEEEES
T ss_pred CCC--CCCceEEEEc
Confidence 985 6677998875
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=151.10 Aligned_cols=171 Identities=16% Similarity=0.112 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY 167 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~ 167 (280)
..++++.+++++ +.. +.+++ ++|+++++.++ +.+++.+||+|+++.|+|..+...+...|+++++++.
T Consensus 207 v~~~ee~la~l~-G~d------~~i~~--~~Gtt~a~~~~--i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~- 274 (755)
T 2vyc_A 207 FGESEKYAARVF-GAD------RSWSV--VVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVP- 274 (755)
T ss_dssp HHHHHHHHHHHH-TCS------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECC-
T ss_pred HHHHHHHHHHHh-CCC------ceEEE--CCcHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeC-
Confidence 355666666664 321 33444 89989999999 8888999999999999998888888889999999987
Q ss_pred cCCCCC----c-----CHHHHHHHHhcCCC-------CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccC
Q 023599 168 DPKTNG----L-----DFQGMLQDLGAAPS-------GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAY 231 (280)
Q Consensus 168 ~~~~~~----~-----d~~~l~~~~~~~~~-------~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y 231 (280)
+.++++ + |++.+++++.+++. ++.+++++|| ||||.+.+ +++|+++|+++++++++|++|
T Consensus 275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~ 350 (755)
T 2vyc_A 275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAW 350 (755)
T ss_dssp CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTT
T ss_pred CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcC
Confidence 333333 4 99999999976421 1236667788 79999876 667799999999999999999
Q ss_pred CCc-ccCcCC-ChhHHHHh--hh-cCCeEEEEecccccccccccccceEEE
Q 023599 232 QGF-VMNMDA-DALPVRMF--VA-DGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 232 ~~~-~~~~~~-~~~~~~~~--~~-~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
... .+.+.. +..++ .. .+ ...+++++.|++|++ +|.+.|.+++
T Consensus 351 ~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~ 398 (755)
T 2vyc_A 351 YGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYIH 398 (755)
T ss_dssp CTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEE
T ss_pred chhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeeee
Confidence 754 233110 11111 11 12 234889999999985 6888555544
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=152.70 Aligned_cols=176 Identities=13% Similarity=-0.046 Sum_probs=125.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-HHHcCCeee
Q 023599 84 PITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-FAAAGLAMK 162 (280)
Q Consensus 84 ~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-~~~~G~~~~ 162 (280)
+..-..++++.+|+++... ..+++ ++|+++++.++ +.+++.+||+|+++.|+|..+... ++..|++++
T Consensus 171 ~~~~i~e~e~~lA~~~gae-------~~i~v--~nGtt~an~~a--i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v 239 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNAD-------KTYFV--LGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPV 239 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEE
T ss_pred ChHHHHHHHHHHHHHHCCC-------cEEEE--CCHHHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEE
Confidence 3344678999999986321 33444 88889999999 888899999999999999877777 778899999
Q ss_pred EEEeecCCCCC----cCHHHH-----HHHHhcC------CCCc-EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeE
Q 023599 163 TYHYYDPKTNG----LDFQGM-----LQDLGAA------PSGA-IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPF 226 (280)
Q Consensus 163 ~v~~~~~~~~~----~d~~~l-----~~~~~~~------~~~~-~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii 226 (280)
+++.. .++++ +|++.+ ++++.++ +..+ +++++++| ||||.+.+ +++|+++|++++++++
T Consensus 240 ~v~~~-~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~li 314 (730)
T 1c4k_A 240 YLQTN-RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIE 314 (730)
T ss_dssp EECEE-ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEE
T ss_pred EEeCC-ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEE
Confidence 88763 22333 688888 8888765 3111 37777888 69999875 6678999999999999
Q ss_pred EcccCCCc-ccCcCCC-hhHHHH-hhhc-CCeEEEEecccccccccccccceEEE
Q 023599 227 FDCAYQGF-VMNMDAD-ALPVRM-FVAD-GGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 227 ~De~y~~~-~~~~~~~-~~~~~~-~~~~-~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+|++|... .+.+... ..++.. .... ..+++++.|+||++ +|.+.|.++.
T Consensus 315 vDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~ 367 (730)
T 1c4k_A 315 FDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIH 367 (730)
T ss_dssp EECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEE
T ss_pred EEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEE
Confidence 99999753 3432100 001100 0011 24789999999985 6888876663
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=141.22 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=106.4
Q ss_pred HHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH-H--HHHcC--CeeeEEEe
Q 023599 92 NKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN-F--FAAAG--LAMKTYHY 166 (280)
Q Consensus 92 r~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~-~--~~~~G--~~~~~v~~ 166 (280)
|+++++++... ++.+++ ++| ++++.++ +..++.+||+|+++.|+|..+.. . +...| .+++.+++
T Consensus 75 r~~la~~~g~~------~~~i~~--~sG-t~a~~~a--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 143 (405)
T 2vi8_A 75 RERAKQLFGAE------HANVQP--HSG-AQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV 143 (405)
T ss_dssp HHHHHHHHTCS------EEECCC--SSH-HHHHHHH--HHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECB
T ss_pred HHHHHHHhCCC------ceEEEe--cCc-HHHHHHH--HHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccc
Confidence 35788876221 233433 555 9999999 77778899999999999987743 1 11233 46777776
Q ss_pred ecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 167 YDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
+++++.+|++.+++++.+ +++ ++++ +|+|+ |... ++++|.++|++||+++|+||+|...........
T Consensus 144 -~~~~~~~d~~~l~~~i~~~~~~---~v~~-~~~~~-~~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--- 211 (405)
T 2vi8_A 144 -DPETHVIDYDDVREKARLHRPK---LIVA-AAAAY-PRII---DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP--- 211 (405)
T ss_dssp -CTTTCSBCHHHHHHHHHHHCCS---EEEE-CCSSC-CSCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC---
T ss_pred -ccccCCcCHHHHHHHHHhcCCe---EEEE-eCCCC-CccC---CHHHHHHHHHHcCCEEEEEccccccccccCcCC---
Confidence 445678999999999976 543 4554 45554 3333 378889999999999999999984332111111
Q ss_pred HHhhhcCCeEEEEeccccccc-ccccccceEEEE
Q 023599 246 RMFVADGGECLVAQSYSKTMG-LYGERVGALSVV 278 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~-~~G~RvG~~v~~ 278 (280)
..+ . ..+ ++++|+||.++ .+| ||+++.
T Consensus 212 ~~~-~-~~d-i~~~s~sK~~~g~~g---G~~~~~ 239 (405)
T 2vi8_A 212 NPV-P-YAH-FVTTTTHKTLRGPRG---GMILCQ 239 (405)
T ss_dssp CST-T-TCS-EEEEESSSTTCCCSC---EEEEEC
T ss_pred Ccc-c-cCC-EEEEeccccCCCCCC---eEEEEc
Confidence 111 1 123 78999999997 666 999874
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=132.12 Aligned_cols=163 Identities=8% Similarity=0.016 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH--HHHHHcCC--eeeEEE
Q 023599 90 EFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP--NFFAAAGL--AMKTYH 165 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~--~~~~~~G~--~~~~v~ 165 (280)
++++.+++++... +.+++ |.||++|++++ + ..+.+||+|++.+++|..+. ..++..|. +++.++
T Consensus 39 ~~~~~l~~~~~~~-------~~v~~--~~sgt~a~~~~--~-~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 106 (379)
T 3ke3_A 39 DLLSNLKTVYNAE-------AAVII--PGSGTYGMEAV--A-RQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLT 106 (379)
T ss_dssp HHHHHHHHHHTCS-------EEEEE--ESCHHHHHHHH--H-HHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEE
T ss_pred HHHHHHHHHhCCC-------CEEEE--cCChhHHHHHH--H-HhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEe
Confidence 4566666664211 45555 99999999998 4 34579999999999886543 34555664 677777
Q ss_pred eecC------CC-CCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccC
Q 023599 166 YYDP------KT-NGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 166 ~~~~------~~-~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~ 237 (280)
.... .. ..+|++.+++++.+ +++ ++++++++||||.+++.+++++|.++|++||+++|+|+++. ....
T Consensus 107 ~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~ 182 (379)
T 3ke3_A 107 AERTEDTEAPKPFAPVDIETAVAKIKEDKSA---IVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVW 182 (379)
T ss_dssp CEESSCCSSCCCEECCCHHHHHHHHHHHTCS---EEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCC
T ss_pred ccccccccccCCCCCCCHHHHHHHHhhcCCc---EEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcc
Confidence 6210 11 24799999999964 444 67778889999999999999999999999999999999976 3211
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
..+...+. -+++.|++|.++ .+..+|++++.
T Consensus 183 --------~~~~~~~~-d~~~~s~~K~l~-~~~g~g~~~~~ 213 (379)
T 3ke3_A 183 --------LDMKELGI-DVLISAPQKGWS-STPCAGLVMLS 213 (379)
T ss_dssp --------CCHHHHTC-SEEEECTTTTTC-SCCCEEEEEEC
T ss_pred --------ccccccCC-CEEEecchhhcC-CCCceEEEEEC
Confidence 11111222 366889999987 34568988764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=136.90 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=92.3
Q ss_pred ecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHH--------HHHHcCCe--eeEEEeecCCCCCcCHHHHHHHHhc
Q 023599 116 QCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPN--------FFAAAGLA--MKTYHYYDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~--------~~~~~G~~--~~~v~~~~~~~~~~d~~~l~~~~~~ 185 (280)
++++|++|+.++ +.+++.|||+|+++++.|..+.. .+...|.. ++.+++ +++++.+|++.+++++.+
T Consensus 125 ~~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~v-d~~~~~iD~d~le~~l~~ 201 (490)
T 2a7v_A 125 QPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTARL 201 (490)
T ss_dssp CCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCB-CTTTCSBCHHHHHHHHHH
T ss_pred eCCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccc-ccccCCcCHHHHHHHHhh
Confidence 377889999999 88999999999999998865431 12334543 344444 445688999999999864
Q ss_pred -CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 186 -APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 186 -~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
+++ +++++.++||+. . ++++|.++|++||+++++|+++. .+.+.+..+ .+ + + +.. +++.|++|
T Consensus 202 ~~~k---lIi~~~s~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~-~~---~-~-~aD-iv~~S~hK 266 (490)
T 2a7v_A 202 FRPR---LIIAGTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKVIP-SP---F-K-HAD-IVTTTTHK 266 (490)
T ss_dssp HCCS---EEEECCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC-CG---G-G-TCS-EEEEESSG
T ss_pred cCCc---EEEEcCCCCCCc--c---cHHHHHHHHHHcCCEEEEccccccccccCCcCC-CC---C-C-CCC-EEEECCcc
Confidence 344 777788899863 3 47888999999999999999963 443322111 11 1 1 123 67899999
Q ss_pred cccccccccceEEEEc
Q 023599 264 TMGLYGERVGALSVVR 279 (280)
Q Consensus 264 ~~~~~G~RvG~~v~~~ 279 (280)
++ .|.|.|++++..
T Consensus 267 ~l--~Gp~GG~i~~~~ 280 (490)
T 2a7v_A 267 TL--RGARSGLIFYRK 280 (490)
T ss_dssp GG--CSCSCEEEEEEC
T ss_pred cC--ccccchheeecc
Confidence 98 478999998764
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-17 Score=147.22 Aligned_cols=211 Identities=15% Similarity=0.016 Sum_probs=129.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...|||..|.....-|+ ..+..++++.+++. ......| +.....+|.+.+++++- ..+.+++ +++
T Consensus 98 dG~~yiD~~~~~~~~~lGh-~~p~V~~Av~~q~~--~~~~~~~-~~~~~~~Lae~L~~~~p-------~~~~v~~--~nS 164 (465)
T 2yky_A 98 DGHAYVNFLGEYTAGLFGH-SHPVIRAAVERALA--VGLNLST-QTENEALFAEAVCDRFP-------SIDLVRF--TNS 164 (465)
Confidence 3567899988763111221 12333333334433 2212223 44455677788877742 1267777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCC--eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEE
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGL--AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVL 193 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~--~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 193 (280)
|++|++.+.++......+++|++.+++|.++..... ..|+ .+..++. .|++.+++++++...+.++|
T Consensus 165 GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aav 237 (465)
T 2yky_A 165 GTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAI 237 (465)
Confidence 999999993322122345899999999977654332 1233 2222332 37888998887432223355
Q ss_pred EecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccccc
Q 023599 194 LQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 194 ~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv 272 (280)
++...+|+||.+. +.+.+++|.++|++||+++|+||+|. +... .. ..+ +......-+.+|||.+| .|+|+
T Consensus 238 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g---~~---~a~-~~~gv~pDi~t~sK~lg-~G~pi 308 (465)
T 2yky_A 238 LVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS---GG---GAQ-EMLGISADLTTLGKYIG-GGMSF 308 (465)
Confidence 5544456699655 68889999999999999999999999 6432 11 111 11112233558999999 49999
Q ss_pred ceEEEEc
Q 023599 273 GALSVVR 279 (280)
Q Consensus 273 G~~v~~~ 279 (280)
||+++..
T Consensus 309 G~v~~~~ 315 (465)
T 2yky_A 309 GAFGGRR 315 (465)
Confidence 9988653
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=136.02 Aligned_cols=200 Identities=12% Similarity=-0.021 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccC--------CCeEEeecccchhHHHHHHHHHHh
Q 023599 62 LNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKE--------NRVSTVQCLSGSGSLRIGADFLAK 133 (280)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~--------~~i~~v~t~g~~~al~~~~~~~~~ 133 (280)
+..+.+...... ......|....+..++++.+++|+....+.+... ...++ |+||++++.++ +++.
T Consensus 92 ~~~~~~~~~~~~--n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~--~~ggt~an~~a--l~~a 165 (481)
T 4e1o_A 92 PSLLGDMLADAI--NCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVL--QSTVSESTLIA--LLAA 165 (481)
T ss_dssp HHHHHHHHHHHH--CCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEE--ESCHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHh--CcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEE--eCchHHHHHHH--HHHH
Confidence 344444444444 2234567777888999999998864443322111 23445 99999999887 4433
Q ss_pred h-------------------cCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC---CCcE
Q 023599 134 H-------------------YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP---SGAI 191 (280)
Q Consensus 134 ~-------------------~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~---~~~~ 191 (280)
. .+++.|+++.+.|..+...++..|++++.+|. ++++.+|++.|++++.++. ..+.
T Consensus 166 r~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~ 243 (481)
T 4e1o_A 166 RKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPV 243 (481)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcE
Confidence 2 25789999999999998888889999999998 3567899999999997642 1256
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-hc-CCeEEEEecccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV-AD-GGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~S~SK~~~~~G 269 (280)
+++.+.++|+||.+- ++++|+++|++||+++++|.+|.....-.. .. +... .. ....+ ..+.+|.++.|
T Consensus 244 ~vv~~~~~t~~G~id---~l~~I~~la~~~~~~lhvDaA~g~~~~~~~-~~---~~~~~gi~~aDsi-~~~~hK~l~~p- 314 (481)
T 4e1o_A 244 FVCATLGTTGVCAFD---CLSELGPICAREGLWLHIDAAYAGTAFLCP-EF---RGFLKGIEYADSF-TFNPSKWMMVH- 314 (481)
T ss_dssp EEEEEBSCTTTCCBC---CHHHHHHHHHHHTCEEEEECTTGGGGGGSG-GG---GGGGTTGGGCSEE-EECHHHHSSCC-
T ss_pred EEEEecCCCCCcCcC---CHHHHHHHHHHcCCeEEeehhhHHHHHhCh-hh---HHHhcCcccCCEE-EEChHHhcCCC-
Confidence 788889999999774 577889999999999999999987643111 11 1111 11 12444 57999998855
Q ss_pred cccceEEEE
Q 023599 270 ERVGALSVV 278 (280)
Q Consensus 270 ~RvG~~v~~ 278 (280)
.-+|++++.
T Consensus 315 ~g~g~l~~~ 323 (481)
T 4e1o_A 315 FDCTGFWVK 323 (481)
T ss_dssp SSCEEEEES
T ss_pred CceEEEEEe
Confidence 566666553
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-15 Score=136.12 Aligned_cols=154 Identities=10% Similarity=-0.034 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC-hHHHHHHc--CCeeeEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN-HPNFFAAA--GLAMKTY 164 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~-~~~~~~~~--G~~~~~v 164 (280)
..++|+.+++++... .+++|++ .|+|+++++.++ +.+++.+| .+.+..+.|.. ....+... |++++.+
T Consensus 80 ~~~~~~~la~~~g~~-----~~~~i~~-~t~g~t~al~~~--~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v 150 (398)
T 2fyf_A 80 VGRVRSGLAELFSLP-----DGYEVIL-GNGGATAFWDAA--AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHHTTCC-----TTCEEEE-EETCHHHHHHHH--HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEE
T ss_pred HHHHHHHHHHHhCCC-----CCceEEE-eCCchhHHHHHH--HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEE
Confidence 457888888876321 1245542 389999999999 77777887 22333332321 12234555 8899999
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
+. + +++..+. .+.++++ +|++++|+||||.+++.+++.++ +|+++|+|++|..+.... +
T Consensus 151 ~~-~-~g~~~~~-----~i~~~~~---~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~~--~--- 209 (398)
T 2fyf_A 151 TS-D-PGSAPEP-----QTDPSVD---VIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLPV--D--- 209 (398)
T ss_dssp EC-C-TTCCCCC-----CCCTTCS---EEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSCC--C---
T ss_pred ec-C-CCCCCCc-----cccCCCC---EEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccCCccc--C---
Confidence 88 3 3333332 1333333 78888999999999998877664 899999999998765421 1
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.+ ..+++.|+||.++++| ++||+++.
T Consensus 210 ---~~~---~di~~~s~sK~~~~~g-g~g~l~~~ 236 (398)
T 2fyf_A 210 ---IAE---TDAYYFAPQKNFASDG-GLWLAIMS 236 (398)
T ss_dssp ---GGG---CSEEEECTTSTTCSCS-SEEEEEEC
T ss_pred ---ccc---CcEEEEecCcccCCCC-ceEEEEEC
Confidence 111 2367999999999776 69998874
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-15 Score=139.47 Aligned_cols=175 Identities=10% Similarity=0.064 Sum_probs=122.9
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCee
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAM 161 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~ 161 (280)
..+..-+.++++.+|+++... ..+++ ++|++.|+.++ +.+++.+||+|+++.++|..+...+...|+++
T Consensus 191 ~~~~g~i~eaE~~lA~~fGa~-------~a~~v--~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~p 259 (715)
T 3n75_A 191 LDHSGPHKEAEQYIARVFNAD-------RSYMV--TNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTP 259 (715)
T ss_dssp TTTBTHHHHHHHHHHHHHTCS-------EEEEE--SSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEE
T ss_pred CCCcHHHHHHHHHHHHHhCCC-------CceEE--CcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEE
Confidence 344444678999999986332 23344 88888999888 88889999999999999999999999999999
Q ss_pred eEEEeecCCCCCc---------CHHHHHHHHhcCC--CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEccc
Q 023599 162 KTYHYYDPKTNGL---------DFQGMLQDLGAAP--SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCA 230 (280)
Q Consensus 162 ~~v~~~~~~~~~~---------d~~~l~~~~~~~~--~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~ 230 (280)
++++.. .+++++ |++.+++++.+++ +.+.++++++| ||+|.+++.+ +|+++|+++ .+++||+
T Consensus 260 v~v~~~-~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~---~I~ela~~~--~livDEA 332 (715)
T 3n75_A 260 IYFRPT-RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTD---FIKKTLDVK--SIHFDSA 332 (715)
T ss_dssp EEECCC-BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHH---HHHHHCCCS--EEEEECT
T ss_pred EEEecc-ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHH---HHHHHhCcC--cEEEccc
Confidence 999862 334443 8999999998653 22236777888 9999999765 556667665 3799999
Q ss_pred CCCcc-cCcCCChhHHHHhhhc--CCe-EEEEecccccccccccc-cceEEEE
Q 023599 231 YQGFV-MNMDADALPVRMFVAD--GGE-CLVAQSYSKTMGLYGER-VGALSVV 278 (280)
Q Consensus 231 y~~~~-~~~~~~~~~~~~~~~~--~~~-~i~~~S~SK~~~~~G~R-vG~~v~~ 278 (280)
|.... +.+..+ ....+... .+. ++++.|++|++ +|+. .||+.+.
T Consensus 333 H~~~~~f~~~~~--~~~al~~g~~aD~vii~~~S~hKtL--~gltqgs~i~v~ 381 (715)
T 3n75_A 333 WVPYTNFSPIYE--GKCGMSGGRVEGKVIYETQSTHKLL--AAFSQASMIHVK 381 (715)
T ss_dssp TCTTGGGSGGGT--TSSTTSSSCCTTCEEEEEECHHHHS--SCCTTCEEEEEE
T ss_pred cccccccCCccc--cccccccCcCCCEEEEEEecccccc--cCCCCeeEEEeC
Confidence 98664 432111 00111110 123 47799999996 5774 5666554
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=132.74 Aligned_cols=200 Identities=9% Similarity=0.002 Sum_probs=137.6
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcccc-------CCCeEEeecccchhHHHHHHHHHHh
Q 023599 61 LLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIK-------ENRVSTVQCLSGSGSLRIGADFLAK 133 (280)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~-------~~~i~~v~t~g~~~al~~~~~~~~~ 133 (280)
.+..+.+...... ......|....+..++++.+++|+....+.+.. ....++ |+||++++.++ +...
T Consensus 86 ~~~~~~~~l~~~~--n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~--t~ggt~anl~a--l~~a 159 (475)
T 3k40_A 86 YPAIVADMLSGAI--ACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVI--QGTASESTLVA--LLGA 159 (475)
T ss_dssp HHHHHHHHHHHHH--CCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEE--ESCHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHh--CccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEE--cCchHHHHHHH--HHHH
Confidence 3344444444444 222455777778889999998886554333211 123455 99999998877 4432
Q ss_pred h-------------------cCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC---CCcE
Q 023599 134 H-------------------YYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP---SGAI 191 (280)
Q Consensus 134 ~-------------------~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~---~~~~ 191 (280)
. .++++|+++...|..+...++..|++++.+|. + +++ +|++.|++++.+++ ..+.
T Consensus 160 r~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~-d-~~~-~d~~~L~~~i~~~~~~~~~~~ 236 (475)
T 3k40_A 160 KAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQS-E-NHR-MRGAALEKAIEQDVAEGLIPF 236 (475)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECC-B-TTB-CCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEEC-C-CCC-cCHHHHHHHHHHHHHCCCccE
Confidence 1 13478999999999999999999999999998 4 356 99999999997642 2245
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-hc-CCeEEEEecccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV-AD-GGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~S~SK~~~~~G 269 (280)
+++.+.++|+||.+- ++++|+++|++||+++++|++|.....-.. .. .... .. ... .+..|++|.++. .
T Consensus 237 ~v~~~~~~t~~G~~~---~l~~I~~la~~~~~~lhvD~A~~~~~~~~~-~~---~~~~~gi~~~D-s~~~~~hK~l~~-p 307 (475)
T 3k40_A 237 YAVVTLGTTNSCAFD---YLDECGPVGNKHNLWIHVDAAYAGSAFICP-EY---RHLMKGIESAD-SFNFNPHKWMLV-N 307 (475)
T ss_dssp EEEEEBSCTTTCCBC---CHHHHHHHHHHTTCEEEEECTTGGGGGGSG-GG---GGGGTTGGGCS-EEEECHHHHSSC-C
T ss_pred EEEEEecCCCCcCcC---CHHHHHHHHHHhCCeEEEeHHhHHHHHhCH-hh---HHHhcCcccCC-EEEECchhccCC-C
Confidence 788888999999874 577889999999999999999987543110 11 1111 11 113 446899998874 4
Q ss_pred cccceEEEE
Q 023599 270 ERVGALSVV 278 (280)
Q Consensus 270 ~RvG~~v~~ 278 (280)
..+|++++.
T Consensus 308 ~g~g~l~~~ 316 (475)
T 3k40_A 308 FDCSAMWLK 316 (475)
T ss_dssp SSCEEEEES
T ss_pred CceEEEEEe
Confidence 677777654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=130.75 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHH-hhcCCCEEEEeCCCCCChHHHHH----HcCCeee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLA-KHYYQHTVYLSQPTYGNHPNFFA----AAGLAMK 162 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~-~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~ 162 (280)
..++++.+++++.. .++++.+ +.|++.+.+++ +++ .+.+||+|+++.|.|+.+...++ ..|++++
T Consensus 110 ~~~~~~~la~~~g~------~~~~i~~--~~g~taa~ea~--~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 110 TFEYQTMIAELAGL------EIANASM--YDGATALAEGV--LLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp HHHHHHHHHHHHTS------SEECSCB--SSHHHHHHHHH--HHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCC------CccceEE--eCcHHHHHHHH--HHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 34677777777532 2356666 99999555544 222 35789999999999998876654 4799999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcc---cCCCcccCcC
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDC---AYQGFVMNMD 239 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De---~y~~~~~~~~ 239 (280)
.++. + ++.+|++. +.+ +.++|++++| ||||.+.+ +++|+++|+++|+++++|. +|..+.
T Consensus 180 ~v~~-~--~~~~d~~~----i~~---~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~~---- 241 (438)
T 1wyu_A 180 TLPL-E--GGRTPLPE----VGE---EVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVLK---- 241 (438)
T ss_dssp EECC-B--TTBCCCCC----CCT---TEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBC----
T ss_pred EEcC-c--CCccCHHH----hCC---CeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCcC----
Confidence 9986 2 34677766 433 3458888889 99999884 7778899999999999552 232221
Q ss_pred CChhHHHHhhhcCCeEEEEeccccccc----ccccccceEEEEc
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMG----LYGERVGALSVVR 279 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~----~~G~RvG~~v~~~ 279 (280)
.. . ..+.+++ +.| +|.|| +.|.|+||+++..
T Consensus 242 --~~--~---~~g~D~~-~~s-~kk~~~~~~~~Gp~~G~l~~~~ 276 (438)
T 1wyu_A 242 --PP--G---AYGADIA-VGD-GQSLGLPMGFGGPHFGFLATKK 276 (438)
T ss_dssp --CH--H---HHTCSEE-EEE-CTTTTCCCGGGCSCCEEEEECG
T ss_pred --CC--c---cCCCCEE-EEC-CcccCCCccCCCCCeeEEEEcH
Confidence 10 1 2233444 444 66654 5678999998753
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=126.04 Aligned_cols=222 Identities=9% Similarity=-0.036 Sum_probs=129.6
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhcc-CCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND-LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...|||..|.+...-|+ .++..++++.+++... ......|+. ....+|++.+++.+..... ...+++++ ++
T Consensus 61 dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f--~~ 134 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLIT--MA 134 (472)
T ss_dssp TSCEEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEE--ES
T ss_pred CCCEEEECCCCHhhcccCC-CCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEE--eC
Confidence 3467889988875222232 2334444443332210 001112322 3457899999996654321 13478888 99
Q ss_pred cchhHHHHHHHHHHhh-----c------------------CC---CEEEEeCCCCCChHHHHH-HcCCee----------
Q 023599 119 SGSGSLRIGADFLAKH-----Y------------------YQ---HTVYLSQPTYGNHPNFFA-AAGLAM---------- 161 (280)
Q Consensus 119 g~~~al~~~~~~~~~~-----~------------------~G---d~Vli~~P~y~~~~~~~~-~~G~~~---------- 161 (280)
||++|++.+..+.... . +| ++|++.+++|.++..... ..|...
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~ 214 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 214 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence 9999999994333100 1 46 899999999988655443 223211
Q ss_pred -eEEEeecCCCC-------------CcCHHHHHHHHhcCC---CCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCc
Q 023599 162 -KTYHYYDPKTN-------------GLDFQGMLQDLGAAP---SGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRL 223 (280)
Q Consensus 162 -~~v~~~~~~~~-------------~~d~~~l~~~~~~~~---~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~ 223 (280)
..++. ....+ ..|++.|++++.+.. .+.++|++...+|+||. ..+++.+++|.++|++||+
T Consensus 215 ~~~~~~-p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 293 (472)
T 1ohv_A 215 WPIAPF-PRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC 293 (472)
T ss_dssp CCEECC-CCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTC
T ss_pred CcccCC-CcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 11222 00000 126788999887521 13447777666888997 5689999999999999999
Q ss_pred eeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 224 LPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 224 ~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
++|+||+|..|..... ......+ +.. ..+-+.||||.+ +.| ||++
T Consensus 294 lli~DEv~~g~g~~g~--~~~~~~~-gv~-~~~Di~t~sK~~-l~G---G~~~ 338 (472)
T 1ohv_A 294 AFLVDEVQTGGGSTGK--FWAHEHW-GLD-DPADVMTFSKKM-MTG---GFFH 338 (472)
T ss_dssp EEEEECTTTTTTTTSS--SSGGGGG-CCS-SCCSEEEECGGG-SSE---EEEE
T ss_pred EEEEeCcccCCCCCCC--chhcccc-CCC-CCCCEEEEcccc-ccC---CccC
Confidence 9999999987665321 1111111 111 012245899995 344 6654
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=98.07 Aligned_cols=147 Identities=9% Similarity=0.024 Sum_probs=102.1
Q ss_pred CeEEeecccchhHHHHHHHHHHhhcC---C-CEEEEeCCCCCChHHHHHHcCCeeeEEEe-ecCCCCCcCHHHHHHHHhc
Q 023599 111 RVSTVQCLSGSGSLRIGADFLAKHYY---Q-HTVYLSQPTYGNHPNFFAAAGLAMKTYHY-YDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 111 ~i~~v~t~g~~~al~~~~~~~~~~~~---G-d~Vli~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~~~~ 185 (280)
..++ ++|+|+++.++ +++.+++ | |+|+++.-++......+...|+++++++. .+++..++|++.+++++.+
T Consensus 136 ~~fl--VnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e 211 (501)
T 3hl2_A 136 NCFV--VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQE 211 (501)
T ss_dssp EEEE--ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHH
T ss_pred cEEE--ECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHh
Confidence 3445 99999887777 6666664 4 99999999888888888899999999854 2344578999999999988
Q ss_pred CCCCcEEEEecC-CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcC-CeEEEEecccc
Q 023599 186 APSGAIVLLQAS-GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADG-GECLVAQSYSK 263 (280)
Q Consensus 186 ~~~~~~~v~~~~-p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK 263 (280)
++.+.+++++.+ +.|-.+. .+++++|+++|++||+++++|++|+....-. ... +.+....+ ... ++.|.=|
T Consensus 212 ~ga~~i~~V~~Ttt~y~p~~---~ddI~eIaeIch~~gIpllVDeAhGah~~~~--~~l-p~sA~~~GrAD~-vVqS~HK 284 (501)
T 3hl2_A 212 LGPDCILCIHSTTSCFAPRV---PDRLEELAVICANYDIPHIVNNAYGVQSSKC--MHL-IQQGARVGRIDA-FVQSLDK 284 (501)
T ss_dssp HCGGGEEEEEEECSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTCTTCHHH--HHH-HHHHHHHSCCCE-EEEEHHH
T ss_pred cCCCcEEEEEecCCCCCCcc---cccHHHHHHHHHHcCCeEEEeCcchhhhhhh--hhh-HHHHHhcCCCcE-EEecccc
Confidence 642344444433 3442222 2468899999999999999999998765211 111 12222333 334 6888999
Q ss_pred ccccc
Q 023599 264 TMGLY 268 (280)
Q Consensus 264 ~~~~~ 268 (280)
++-+|
T Consensus 285 ~llvp 289 (501)
T 3hl2_A 285 NFMVP 289 (501)
T ss_dssp HHCCC
T ss_pred cceee
Confidence 98554
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=97.65 Aligned_cols=149 Identities=8% Similarity=-0.023 Sum_probs=97.9
Q ss_pred cccchhHHHHHHHHHHhhcC----CCEEEEeCCCCCChHHHHHHcCCeeeEEEee-cCCCCCcCHHHHHHHHhcCC-CCc
Q 023599 117 CLSGSGSLRIGADFLAKHYY----QHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY-DPKTNGLDFQGMLQDLGAAP-SGA 190 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~----Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~~~~~~-~~~ 190 (280)
++|+|++..++ +++.+++ |+.|+++.-++......+...|+.+++++.. +++.+.+|++.+++++++.+ ..+
T Consensus 122 V~GaT~~~~a~--~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~ 199 (450)
T 3bc8_A 122 VPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI 199 (450)
T ss_dssp ESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGE
T ss_pred ECCHHHHHHHH--HHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCE
Confidence 88888665555 4444444 8999999888887888888899998888542 23457899999999998754 233
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhc-CCeEEEEecccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVAD-GGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G 269 (280)
.+|+.+..++.+|.+ +++++|+++|++||+++++|++|+...... ... +.+..+. +... ++.|.-|++. .-
T Consensus 200 ~~Vv~t~t~~g~g~~---ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~--~~l-~~~a~~~~~AD~-~v~S~HK~l~-a~ 271 (450)
T 3bc8_A 200 LCLHSTTACFAPRVP---DRLEELAVICANYDIPHVVNNAYGLQSSKC--MHL-IQQGARVGRIDA-FVQSLDKNFM-VP 271 (450)
T ss_dssp EEEEEESSCCTTBCC---CCHHHHHHHHHHHTCCEEEECTTTTTCHHH--HHH-HHHHHHHSCCCE-EEEEHHHHHS-CC
T ss_pred EEEEEECCcCCCcee---cCHHHHHHHHHHCCCeEEEECCCchhhhhh--HhH-HHHHhcccCCCE-EEECCccCCC-ch
Confidence 344443333444444 458888999999999999999998654311 111 1122221 2344 4678999885 33
Q ss_pred cccceE
Q 023599 270 ERVGAL 275 (280)
Q Consensus 270 ~RvG~~ 275 (280)
.-.|++
T Consensus 272 ~~~~~l 277 (450)
T 3bc8_A 272 VGGAII 277 (450)
T ss_dssp SSCEEE
T ss_pred hccEEE
Confidence 334433
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=97.37 Aligned_cols=157 Identities=12% Similarity=-0.013 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcC--CCEEEEeCCCCCCh--HHHHHHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYY--QHTVYLSQPTYGNH--PNFFAAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~--Gd~Vli~~P~y~~~--~~~~~~~G~~~~~ 163 (280)
+++.|+.+++++.... +++|++ .|.|+|++++++ +.+++.+ ||+|++..-++... ...++..|..++.
T Consensus 60 ~~~ar~~la~ll~~~~-----~~evif-~t~~~T~a~n~a--~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~ 131 (377)
T 3e77_A 60 INNTENLVRELLAVPD-----NYKVIF-LQGGGCGQFSAV--PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIV 131 (377)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEEE-ESSHHHHHHHHH--HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEEC
T ss_pred HHHHHHHHHHHhCCCC-----CCeEEE-EcCchHHHHHHH--HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 3567788888874321 245655 257999999999 7787765 99988776554332 3344566877776
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++. ++++..+++.++.++.++++ +|.+++..|.||++.+. +|+++++++++|.+..-...+-+
T Consensus 132 ~~~--~~~~~~~~~~~~~~i~~~t~---lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~~g~~~id---- 194 (377)
T 3e77_A 132 HPK--LGSYTKIPDPSTWNLNPDAS---YVYYCANETVHGVEFDF--------IPDVKGAVLVCDMSSNFLSKPVD---- 194 (377)
T ss_dssp SCC--CSSSCSCCCGGGCCCCTTCS---CEEEESEETTTTEECSS--------CCCCTTCCEEEECTTTTTSSCCC----
T ss_pred ecc--CCCcCCCCChHHhccCCCcc---EEEEeCccCchheEchh--------hhccCCCEEEEEcccccCCCCCc----
Confidence 676 33445677776665655544 67777778888999986 36789999999998866544321
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.+. .+ .+.|--|.+|.+| +|++++.
T Consensus 195 ----~~~~--~~-~~~s~~K~~gp~G--~g~l~~~ 220 (377)
T 3e77_A 195 ----VSKF--GV-IFAGAQKNVGSAG--VTVVIVR 220 (377)
T ss_dssp ----GGGC--SE-EEEEGGGTTSCTT--CEEEEEE
T ss_pred ----hhhc--CE-EEEecccccCCCc--cEEEEEc
Confidence 1122 23 6788899998777 5666654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-08 Score=91.05 Aligned_cols=212 Identities=11% Similarity=-0.009 Sum_probs=125.7
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...||+..|.-...-|+ -.+..++++.+++. ..... ..+..-..+|.+.+++.+-+ .+.+.+ +++
T Consensus 85 dG~~ylD~~~g~~~~~lGH-~hp~v~~Av~~q~~--~~~~~-~~~~~~~~~lae~l~~~~p~-------~~~v~f--~~S 151 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGH-SAPEIRDAVIEAMQ--GGINL-TGHNLLEGRLARLICERFPQ-------IEQLRF--TNS 151 (454)
T ss_dssp TCCEEEESSGGGGTTTTCS-CCHHHHHHHHHHHH--TCSCC-CSEESSHHHHHHHHHHHSTT-------CSEEEE--ESS
T ss_pred CCCEEEEccccHHhhcccC-CCHHHHHHHHHHHh--cCCCc-cCCcHHHHHHHHHHHHhCCC-------CCEEEE--eCc
Confidence 4567888876642122222 12334444445554 22122 12223345677777776522 277777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH----cCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEe
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA----AGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~ 195 (280)
|++|.+.+.++.......++|+...-+|.+....+.. .+........ + .-|.+.+++.+.++..+..+|++
T Consensus 152 GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~--p---~nd~~~l~~~l~~~~~~iAavIv 226 (454)
T 4ao9_A 152 GTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL--P---YNDAQTARAQIERHGPEIAVVLV 226 (454)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE--C---TTCHHHHHHHHHHTGGGEEEEEE
T ss_pred hHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC--C---CchHHHHHHHHhhcCCceEEEEe
Confidence 9999999954433222347888888888764321110 0111111222 1 13789999999876555556666
Q ss_pred cCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccce
Q 023599 196 ASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGA 274 (280)
Q Consensus 196 ~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~ 274 (280)
..-..-.|.+. +++-+++|.++|++||+++|.||+... ... ........+-.++++ +++|.+| .|+-+|.
T Consensus 227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G----~~~a~e~~gv~PDi~---t~gK~lg-gG~Piga 297 (454)
T 4ao9_A 227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLA----PHGLANKLGIRSDLT---TLGKYIG-GGMSFGA 297 (454)
T ss_dssp CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGS----TTCHHHHHTCCCSEE---EEEGGGG-TTSSCEE
T ss_pred ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCc----cccchhccCCCCcEE---EeccccC-CCCccee
Confidence 55555567554 577799999999999999999999863 111 111122223334544 6889998 7888998
Q ss_pred EEEE
Q 023599 275 LSVV 278 (280)
Q Consensus 275 ~v~~ 278 (280)
++..
T Consensus 298 ~~~~ 301 (454)
T 4ao9_A 298 FGGR 301 (454)
T ss_dssp EEEC
T ss_pred eeeH
Confidence 7654
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-09 Score=95.15 Aligned_cols=159 Identities=12% Similarity=-0.039 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeeeE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~ 163 (280)
.-+++.|+.+++++.... +++|++ .|.|+|++++++ +.+++.+||+|++..-+.... ...++..| ++..
T Consensus 72 ~~~~~ar~~la~ll~~~~-----~~evif-~t~~~T~a~n~a--i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~ 142 (386)
T 3qm2_A 72 QVAEEAEQDFRDLLNIPS-----NYKVLF-CHGGGRGQFAGV--PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQI 142 (386)
T ss_dssp -CCHHHHHHHHHHHTCCT-----TEEEEE-EESCTTHHHHHH--HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEE
T ss_pred HHHHHHHHHHHHHhCCCC-----CceEEE-EcCCchHHHHHH--HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEE
Confidence 457889999999975421 145654 258999999999 888888999987554433322 33345678 8888
Q ss_pred EEeec--CCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC
Q 023599 164 YHYYD--PKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 164 v~~~~--~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 240 (280)
++. + +++..++++.++.++.++++ +|.+++..|.||+. .+.+++ . +|+++++|.+..-...+-+
T Consensus 143 v~~-~~~~~G~~~~~~~~~~~l~~~t~---lV~~~h~et~tG~~i~pi~~i---~-----~g~~~~vDa~qs~g~~pid- 209 (386)
T 3qm2_A 143 IDA-KITVDGKRAVKPMREWQLSDNAA---YLHYCPNETIDGIAIDETPDF---G-----PEVVVTADFSSTILSAPLD- 209 (386)
T ss_dssp EEC-EEEETTEEEECCGGGCCCCTTCS---CEEECSEETTTTEECCCCCCC---C-----TTCCEEEECTTTTTSSCCC-
T ss_pred Eec-CcccCCCCCCchHHHhhcCCCCc---EEEEECCcCCcCEecCchhhh---c-----CCCEEEEEcccccCCCCCC-
Confidence 887 3 23333677777777766555 67777777888996 554443 2 7999999998765444311
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.+. .+ .+.|--|.+|.+| +|++++.
T Consensus 210 -------v~~~--~~-~~~s~hK~lGP~G--~g~l~v~ 235 (386)
T 3qm2_A 210 -------VSRY--GV-IYAGAQKNIGPAG--LTLVIVR 235 (386)
T ss_dssp -------GGGC--SE-EEEETTTTTCCTT--EEEEEEE
T ss_pred -------cccc--CE-EEEecccccCCCc--cEEEEEC
Confidence 1122 24 5688899998555 5666654
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-06 Score=84.10 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=64.9
Q ss_pred HHHHHHHhc-----CCCCcEEEEecCC-CCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh
Q 023599 177 QGMLQDLGA-----APSGAIVLLQASG-HNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV 249 (280)
Q Consensus 177 ~~l~~~~~~-----~~~~~~~v~~~~p-~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 249 (280)
+.+++.+.+ .+.+.++|++..- ++..|... +++.+++|.++|++||+++|+||++..|...... .. ....
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~--fa-~e~~ 653 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVE--TT-TELL 653 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBS--ST-HHHH
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCc--hh-hHhc
Confidence 567776653 2334456666553 67778765 7788999999999999999999999988553211 11 1222
Q ss_pred hcCCeEEEEecccccccccc-cccceEEEEc
Q 023599 250 ADGGECLVAQSYSKTMGLYG-ERVGALSVVR 279 (280)
Q Consensus 250 ~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~~ 279 (280)
+..++++ +|||.++ .| +++|++++..
T Consensus 654 gv~PDii---tlsK~L~-gG~~Plgav~~~~ 680 (831)
T 4a0g_A 654 GCKPDIA---CFAKLLT-GGMVPLAVTLATD 680 (831)
T ss_dssp SSCCSEE---EECGGGG-TTSSCCEEEEECH
T ss_pred CCCCcEE---EEecccc-cCccCcEEEEECH
Confidence 3334544 7999997 57 7999998753
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.4e-07 Score=80.93 Aligned_cols=204 Identities=18% Similarity=0.168 Sum_probs=117.0
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCC---CC------CHHHHHHHHHHHhCCCCccccCCCeE
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPI---TG------LPEFNKLSAKLIFGADSPAIKENRVS 113 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~G------~~~lr~~ia~~l~~~~~~~~~~~~i~ 113 (280)
.-|+|=..+ | +..+.+.++.-....++. ..+|+.. .| ++.|....++.+++.... +.-+
T Consensus 55 ~~ieLIASE----N---~~S~aV~~a~gS~ltnKY-aEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A----~w~V 122 (490)
T 3ou5_A 55 RGLELIASE----N---FCSRAALEALGSCLNNKY-SEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGV 122 (490)
T ss_dssp HSEECCTTC----C---CCCHHHHHHHTSGGGTCC-CCC----------CHHHHHHHHHHHHHHHHTTCCTT----TEEE
T ss_pred cCceEecCC----C---cCCHHHHHHhcCcccccc-cCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCcc----ccCC
Confidence 458886655 6 566666665555443222 2223221 12 233444455557766431 2112
Q ss_pred EeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH--------HHcC--CeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 114 TVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF--------AAAG--LAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 114 ~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~--------~~~G--~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
-|+..+|+.|...+ +.++++|||+|+..+...++|...- ...| .+.+.+++ +++++.+|.|++++..
T Consensus 123 NVQP~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~v-d~~t~~IDyd~~~~~A 199 (490)
T 3ou5_A 123 NVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTA 199 (490)
T ss_dssp ECCCSSHHHHHHHH--HHHHCC-CCCEECBC----------------------------CBCE-ETTTTEECHHHHHHHH
T ss_pred CCCcCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCccccccccccccccccc-CCCCCcccHHHHHHHH
Confidence 24588999999999 9999999999999998887764321 1122 24566666 6777889999999988
Q ss_pred hcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecc
Q 023599 184 GAA-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSY 261 (280)
Q Consensus 184 ~~~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 261 (280)
.+. |+ +|+..--.+|- .-+++++.++|.+.|.++++|-++. .|+.....+ .| .+. .+ ++..|.
T Consensus 200 ~~~kPk---lIi~G~SaY~r-----~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p-sP----~~~-AD-vVTtTT 264 (490)
T 3ou5_A 200 RLFRPR---LIIAGTSAYAR-----LIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP-SP----FKH-AD-IVTTTT 264 (490)
T ss_dssp HHHCCS---EEEECCSSCCS-----CCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC-CG----GGT-CS-EEEEES
T ss_pred hhcCCC---eEEECCccCcc-----ccCHHHHHHHHhhcccEEEechhhhhhhhcccccC-Cc----ccc-ce-EEeccc
Confidence 765 33 66654334443 2247788888999999999999983 233321111 11 122 23 558899
Q ss_pred cccccccccccceEEEE
Q 023599 262 SKTMGLYGERVGALSVV 278 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~ 278 (280)
-|++ .|=|-|.|.+.
T Consensus 265 HKTL--rGPrGG~Il~~ 279 (490)
T 3ou5_A 265 HKTL--RGARSGLIFYR 279 (490)
T ss_dssp SSTT--CSCSCEEEEEE
T ss_pred cccc--cCCCceEEEec
Confidence 9998 58899987764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.2e-07 Score=79.82 Aligned_cols=153 Identities=11% Similarity=-0.016 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEE-EeCCCCC-ChHHHHHHcCCeeeEEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVY-LSQPTYG-NHPNFFAAAGLAMKTYH 165 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vl-i~~P~y~-~~~~~~~~~G~~~~~v~ 165 (280)
+++.|+.+++++.... +++|++ .|.|||++++++ +.+++ +||++. +..-.|. .+...++..|+++..++
T Consensus 52 ~~~~r~~la~ll~~~~-----~~~v~f-~t~~~T~a~n~~--~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~ 122 (361)
T 3m5u_A 52 HFGAQEKAKKLYELND-----DYEVLF-LQGGASLQFAMI--PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVA 122 (361)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEEE-ESSHHHHHHHHH--HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhCCCC-----CceEEE-EcCcHHHHHHHH--HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEe
Confidence 4567778888874321 245553 399999999999 77877 888653 2222332 12334567799999999
Q ss_pred eecCCC-CCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 166 YYDPKT-NGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 166 ~~~~~~-~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
. +..+ +..+++. + +.++++ +|.+++..|.||...+. +++ +++++++|.+..-...+-+.
T Consensus 123 ~-~~~g~~~~~~~~-~--l~~~t~---lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~~g~~~id~---- 182 (361)
T 3m5u_A 123 S-SEESNFDHIPRV-E--FSDNAD---YAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSDFFSRKVDF---- 182 (361)
T ss_dssp E-CTTTTSCSCCCC-C--CCTTSS---EEEEESEETTTTEECSS--------CCC-CSSCEEEECGGGTTSSCCCC----
T ss_pred c-ccCcCCCcCChh-h--cCCCCC---EEEEeCCCCCcceeCCc--------ccc-cCCEEEEEcccccCCCCCCc----
Confidence 8 3332 1145555 3 655554 77777778888998762 333 49999999987654443111
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. + .. +.+.|--|.+|.+| +|++++.
T Consensus 183 -~---~--~d-~~~~s~~K~~gp~G--~g~l~~~ 207 (361)
T 3m5u_A 183 -S---N--IA-LFYGGVQKNAGISG--LSCIFIR 207 (361)
T ss_dssp -T---T--EE-EEEEETTTTSSCTT--CEEEEEE
T ss_pred -c---c--CC-EEEEechhccCCCc--cEEEEEc
Confidence 1 1 12 56789999998665 5555553
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=73.58 Aligned_cols=176 Identities=11% Similarity=0.065 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH-HHcC---------
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF-AAAG--------- 158 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~-~~~G--------- 158 (280)
.+|.+.+++..-... .+.+.+ +++|++|.+.+.++.......++|+...-+|.+..... ...+
T Consensus 110 ~~lae~L~~~~p~~~-----~~~v~f--~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~ 182 (456)
T 4atq_A 110 VAVTEQLNRLTPGDH-----AKRTVL--FNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNF 182 (456)
T ss_dssp HHHHHHHHHHSSCSS-----CEEEEE--ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTS
T ss_pred HHHHHHHHHhCCCCC-----CcEEEE--eCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCC
Confidence 355566666532111 245666 89999999999655444334578998888997654322 2111
Q ss_pred ----CeeeEEEeecC----CCCCcCHHHHHHHHh---c--CCCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCce
Q 023599 159 ----LAMKTYHYYDP----KTNGLDFQGMLQDLG---A--APSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLL 224 (280)
Q Consensus 159 ----~~~~~v~~~~~----~~~~~d~~~l~~~~~---~--~~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ 224 (280)
..+..+|.... .....+.+.++..+. + .+.+...|++..-+.-.|.+ .+++-+++|.++|++||++
T Consensus 183 ~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gil 262 (456)
T 4atq_A 183 GPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIV 262 (456)
T ss_dssp CSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCE
T ss_pred CCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCc
Confidence 12333443111 011122333333332 1 12334556655444445654 4567899999999999999
Q ss_pred eEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 225 PFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 225 ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+|.||+...|.--.. .+. ....+..++++ +++|..| .|+-+|.+++.
T Consensus 263 lI~DEV~tG~GRtG~--~~a-~e~~gv~PDiv---t~gK~lg-gg~P~~av~~~ 309 (456)
T 4atq_A 263 FIADEVQSGFCRTGE--WFA-VDHEGVVPDII---TMAKGIA-GGLPLSAITGR 309 (456)
T ss_dssp EEEECTTTTTTTTSS--SSG-GGGTTCCCSEE---EECGGGG-TTSSCEEEEEE
T ss_pred eEecccccccCCccc--ccc-ccccCCCCchh---hhhhccc-CcCCceeeEec
Confidence 999999988643211 111 11122234554 5679987 78889987764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00026 Score=64.68 Aligned_cols=160 Identities=13% Similarity=0.047 Sum_probs=93.0
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-----cCC-CEEEEeCCCCCChHH-HHHHcCC-----------eeeEEEeec---
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-----YYQ-HTVYLSQPTYGNHPN-FFAAAGL-----------AMKTYHYYD--- 168 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-----~~G-d~Vli~~P~y~~~~~-~~~~~G~-----------~~~~v~~~~--- 168 (280)
+.+.+ +++|++|.+.+.++.... .++ .+|+...-+|.+... .+...|- ....++..+
T Consensus 129 ~~v~f--~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~ 206 (473)
T 4e3q_A 129 GRVFY--TNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWR 206 (473)
T ss_dssp CEEEE--ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHH
T ss_pred cEEEE--eCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccc
Confidence 67777 999999999995443221 233 578888888866432 2222221 122222200
Q ss_pred -CCCCCc-------CHHHHHHHHhcC-CCCcEEEEecCCCCCCCCC-CCHHHHHHHHHHHHhCCceeEEcccCCCcccCc
Q 023599 169 -PKTNGL-------DFQGMLQDLGAA-PSGAIVLLQASGHNPTGID-PTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNM 238 (280)
Q Consensus 169 -~~~~~~-------d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~-~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~ 238 (280)
...... ..+.+++.+.+. +.+..+|++..-..-.|.+ .+++-+++|.++|++||+++|.||+...|.--.
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG 286 (473)
T 4e3q_A 207 YGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG 286 (473)
T ss_dssp HSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTS
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCccc
Confidence 000000 123455555433 3344556665545555654 456788999999999999999999999884421
Q ss_pred CCChhHHHHhhhcCCeEEEEecccccccccc-cccceEEEE
Q 023599 239 DADALPVRMFVADGGECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 239 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
. .+. ....+-.+.++ .++|.++ .| +-+|.+++.
T Consensus 287 ~--~fa-~e~~gv~PDi~---t~~K~l~-gG~~Pl~av~~~ 320 (473)
T 4e3q_A 287 N--TWG-CVTYDFTPDAI---ISSKNLT-AGFFPMGAVILG 320 (473)
T ss_dssp S--SCH-HHHTTCCCSEE---EECGGGG-TTSSCCEEEEEC
T ss_pred c--hhH-HHhcCCCCChH---Hhccccc-CCCCCccccccc
Confidence 1 111 22223334555 5789997 56 888877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 280 | ||||
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 2e-61 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-60 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 6e-56 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 1e-54 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-54 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 7e-53 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-12 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 6e-10 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-09 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 0.001 |
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 197 bits (502), Expect = 2e-61
Identities = 130/272 (47%), Positives = 174/272 (63%), Gaps = 7/272 (2%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S F +V +A + ++ ++A FREDP P K+NLG G YRT++ +P +L VR+ EQ + N+
Sbjct: 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN 63
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYLPI GL EF +++L G DSPA++E RV VQ L G+G+LRIGA+FLA+ Y
Sbjct: 64 SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 123
Query: 136 YQH-----TVYLSQPTYGNHPNFFAAAGLAMKTYH-YYDPKTNGLDFQGMLQDLGAAPSG 189
VY+S PT+ NH F AG + Y+D + GLD QG L DL AP
Sbjct: 124 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 183
Query: 190 AIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMF 248
+I +L A HNPTG DPT +QW+QI +M+ + L PFFD AYQGF N++ DA +R F
Sbjct: 184 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 243
Query: 249 VADGGECLVAQSYSKTMGLYGERVGALSVVRH 280
V++G E AQS+SK GLY ERVG L+VV
Sbjct: 244 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAK 275
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 194 bits (492), Expect = 3e-60
Identities = 110/257 (42%), Positives = 154/257 (59%)
Query: 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS 77
F++V A PI +M F+EDP K+NL G+Y E+G L AV +AE L
Sbjct: 2 FQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPH 61
Query: 78 ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ 137
YLP+ GL + A L+FGAD P +K+ RV+T+Q L GSG+L++GADFL +++ +
Sbjct: 62 GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPE 121
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
V++S PT+ NH FA AG + TY +YD TNG+ F +L L P+ +IVLL
Sbjct: 122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
HNPTG D T QW+ + ++++ + L+PF D AYQGF M+ DA +R + G LV
Sbjct: 182 CHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALV 241
Query: 258 AQSYSKTMGLYGERVGA 274
+ S+SK LYGERVG
Sbjct: 242 SNSFSKIFSLYGERVGG 258
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 183 bits (464), Expect = 6e-56
Identities = 120/267 (44%), Positives = 172/267 (64%), Gaps = 3/267 (1%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
S + V PI V AF+ D + K+NLG G YR + GKP +LN VR+AE ++
Sbjct: 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK 61
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
DKEYLPI GL +F + SA+L G +S A K R TVQ +SG+GSLR+GA+FL + +
Sbjct: 62 -KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 120
Query: 136 -YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194
+ VYL +P++GNH F AGL ++ Y YYDPKT LDF G ++D+ P +I+LL
Sbjct: 121 KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILL 180
Query: 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDADALPVRMFVADGG 253
A HNPTG+DP +QW+++ +++ + LL +FD AYQGF +++ DA +R F+ G
Sbjct: 181 HACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240
Query: 254 ECLVAQSYSKTMGLYGERVGALSVVRH 280
+ +++QSY+K MGLYGER GA +V+
Sbjct: 241 DVVLSQSYAKNMGLYGERAGAFTVICR 267
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 179 bits (454), Expect = 1e-54
Identities = 116/263 (44%), Positives = 159/263 (60%), Gaps = 1/263 (0%)
Query: 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS 77
FE + A PI + FR D P K+NLG GVY+ E GK +L +V++AEQ L+ +
Sbjct: 2 FENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-E 60
Query: 78 ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ 137
K YL I G+PEF + + +L+FG S I + R T Q G+G+LR+ ADFLAK+
Sbjct: 61 TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV 120
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
V++S P++ NH + F +AGL ++ Y YYD + + LDF ++ L A +G +VL
Sbjct: 121 KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 180
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
HNPTGIDPT +QW+ + QL K LP FD AYQGF ++ DA +R F A E +V
Sbjct: 181 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240
Query: 258 AQSYSKTMGLYGERVGALSVVRH 280
A SYSK GLY ERVGA ++V
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAA 263
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 178 bits (451), Expect = 4e-54
Identities = 91/255 (35%), Positives = 130/255 (50%), Gaps = 4/255 (1%)
Query: 18 FEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLS 77
+ A I A+M FR DP K++LG GVY+ G ++ AV AEQ ++
Sbjct: 2 LGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-E 60
Query: 78 ADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQ 137
K Y ++G PEF K +LI G +T+ + G+G+LR +
Sbjct: 61 TTKTYAGLSGEPEFQKAMGELILGDGLK---SETTATLATVGGTGALRQALELARMANPD 117
Query: 138 HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197
V++S PT+ NH + GL ++TY Y+D +T G+DF+GM DL AA G +VLL
Sbjct: 118 LRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGC 177
Query: 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257
HNPTG + T QW +I ++ LP D AYQGF ++ DA R+ + E L+
Sbjct: 178 CHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLI 237
Query: 258 AQSYSKTMGLYGERV 272
A S SK G+Y ER
Sbjct: 238 AASCSKNFGIYRERT 252
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 175 bits (444), Expect = 7e-53
Identities = 103/268 (38%), Positives = 148/268 (55%), Gaps = 4/268 (1%)
Query: 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
+ F + ++ + + +D K++LG G YR + GKP +L +V+ AE+L+ ND
Sbjct: 3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHND 62
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
S + EYL ITGLP +AK+IFG S A++E+RV +VQ LSG+G+L I A F +K +
Sbjct: 63 SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF 122
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
VYLS+PT+ NH F GL TY Y+ +T LD G L + AP G+I +L
Sbjct: 123 PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLH 182
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFV----MNMDADALPVRMFVAD 251
+ HNPTG+DPT++QW QI + K + FD AYQGF ++
Sbjct: 183 SCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242
Query: 252 GGECLVAQSYSKTMGLYGERVGALSVVR 279
V QS++K G+YGERVG +
Sbjct: 243 VSPVFVCQSFAKNAGMYGERVGCFHLAL 270
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 64.9 bits (157), Expect = 1e-12
Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 7/199 (3%)
Query: 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVY 141
Y P GL E + A+ + + V + L + FL V
Sbjct: 58 YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDG---EEVL 114
Query: 142 LSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201
+ P + ++ AG Y+ L+ + + L+ S NP
Sbjct: 115 IPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKK---YVTDKTRALIINSPCNP 171
Query: 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSY 261
TG T + E+I + L+ D Y+ F+ + + + +
Sbjct: 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHY-SIASLDGMFERTITVNGF 230
Query: 262 SKTMGLYGERVGALSVVRH 280
SKT + G R+G ++
Sbjct: 231 SKTFAMTGWRLGFVAAPSW 249
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 56.7 bits (136), Expect = 6e-10
Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 7/196 (3%)
Query: 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVY 141
Y P G P + A+ + + + + + G S+ + + V
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNI--LVTNGGKQSIFNLMLAMIEP--GDEVI 118
Query: 142 LSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNP 201
+ P + ++P A + + + Q A +L+ + NP
Sbjct: 119 IPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQ---AITPKTKLLVFNTPSNP 175
Query: 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSY 261
TG+ T + I Q+ L D Y+ + + +V +
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGF 235
Query: 262 SKTMGLYGERVGALSV 277
+KT + G RVG L+
Sbjct: 236 AKTYAMTGWRVGFLAG 251
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 55.5 bits (133), Expect = 2e-09
Identities = 42/260 (16%), Positives = 77/260 (29%), Gaps = 27/260 (10%)
Query: 23 RAADIPIYAVMAAF-------REDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND 75
R + A +A R+ + L G + T + A R+A
Sbjct: 7 RVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTP---EHVKEAARRALAQGKT- 62
Query: 76 LSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHY 135
+Y P G+PE + A + T+ + GS +L +
Sbjct: 63 -----KYAPPAGIPELRE--ALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDP- 114
Query: 136 YQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQ 195
V + P + ++P AG + + D + + + A L+
Sbjct: 115 -GDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRR---AITPRTKALVV 170
Query: 196 ASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255
S +NPTG + E + +L D Y+ + +
Sbjct: 171 NSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE----HFSPGRVAPEHT 226
Query: 256 LVAQSYSKTMGLYGERVGAL 275
L +K + G R+G
Sbjct: 227 LTVNGAAKAFAMTGWRIGYA 246
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.001
Identities = 36/252 (14%), Positives = 64/252 (25%), Gaps = 12/252 (4%)
Query: 26 DIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPI 85
D + + + L GF + + +A Q V+ +Y
Sbjct: 11 DYNPWVEFVKLASEHDVVNLGQGFPDFPPPD-------FAVEAFQHAVSGDFMLNQYTKT 63
Query: 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQP 145
G P K+ A I R V + + +
Sbjct: 64 FGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFD 123
Query: 146 TYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL----GAAPSGAIVLLQASGHNP 201
Y + + D G S L+ + +NP
Sbjct: 124 CYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNP 183
Query: 202 TGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSY 261
G + ++ E + L + ++ D YQ V + + + L S
Sbjct: 184 LGKVFSREELELVASLCQQHDVVCITDEVYQWMVYD-GHQHISIASLPGMWERTLTIGSA 242
Query: 262 SKTMGLYGERVG 273
KT G +VG
Sbjct: 243 GKTFSATGWKVG 254
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 280 | |||
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.97 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.88 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.82 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.77 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.61 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.59 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.59 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.56 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.52 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.52 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.5 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.5 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.48 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.46 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.45 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.45 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.44 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.43 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.4 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.39 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.39 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.37 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.32 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.32 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.29 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.26 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.26 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.23 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.2 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.2 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.16 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.08 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.03 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.99 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.97 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 98.95 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 98.89 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 98.82 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.74 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.72 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.7 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.69 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.66 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 98.65 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 98.63 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.6 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 98.6 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.54 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.5 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.49 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.34 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.2 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.16 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 97.98 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 97.97 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.83 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 97.48 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 97.19 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 95.32 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 93.3 | |
| d1jaka1 | 356 | beta-N-acetylhexosaminidase {Streptomyces plicatus | 85.24 | |
| d2gjxa1 | 362 | beta-hexosaminidase A {Human (Homo sapiens) [TaxId | 84.0 |
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=2.3e-46 Score=336.86 Aligned_cols=263 Identities=45% Similarity=0.832 Sum_probs=224.6
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
|+|++++..|+++|+.++++++.+.++++|||++|.+.|+++.+++.+.++++...+..+ +..++|.|..|.++||+++
T Consensus 2 ~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~-~~~~~Y~~~~G~~~lr~ai 80 (401)
T d7aata_ 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK-KMDKEYLPIAGLADFTRAS 80 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-TCCCCCCCTTCCHHHHHHH
T ss_pred CccccCCCCCCChHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhC-CCCCCCCCCCCCHHHHHHH
Confidence 789999999999999999999888888999999998888888888889999988887743 3356899999999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHH-HHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCc
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGAD-FLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGL 174 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~-~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~ 174 (280)
++++.+.++....+++|++..+.++++++.++.. +..++.|||+|++++|+|+.|...++..|++++++|+.+++++..
T Consensus 81 a~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~ 160 (401)
T d7aata_ 81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL 160 (401)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred HHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccc
Confidence 9999999988888888887445555555544422 445788999999999999999999999999999999976677888
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC-ChhHHHHhhhcCC
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA-DALPVRMFVADGG 253 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~ 253 (280)
+++.+.+.+...+++.++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++.. .......+.....
T Consensus 161 ~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d7aata_ 161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240 (401)
T ss_dssp CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred cHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhc
Confidence 999999988766566779999999999999999999999999999999999999999999996421 1122333445567
Q ss_pred eEEEEecccccccccccccceEEEEc
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+++++.|+||.++++|||+||++++.
T Consensus 241 ~~~~~~s~sk~~~~~G~RiG~~~~~~ 266 (401)
T d7aata_ 241 DVVLSQSYAKNMGLYGERAGAFTVIC 266 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred ccceeEeccccceeeccccceeecch
Confidence 89999999999999999999999864
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=2.3e-46 Score=338.01 Aligned_cols=264 Identities=39% Similarity=0.707 Sum_probs=228.4
Q ss_pred cccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 16 SAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
|+|++++..|+++|+.+++.+++++++++|||++|.+.|+++.+++.+.++++.+.+..+....++|.|..|.++||+++
T Consensus 3 ~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ai 82 (412)
T d1yaaa_ 3 TLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNA 82 (412)
T ss_dssp TTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred ChhhcCCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHH
Confidence 68999999999999999999998888889999999888889989999999999888775555567899999999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcC
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLD 175 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 175 (280)
++++++.++....++.+.++++.|+.+++..+..+...+.+||+|++++|+|+.|...++..|++++.+++.+++++..+
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~ 162 (412)
T d1yaaa_ 83 AKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD 162 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEEC
T ss_pred HHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceeccccccccccccc
Confidence 99999998877777887766667777777666545566789999999999999999999999999999998767778889
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh-HH---HHhhhc
Q 023599 176 FQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL-PV---RMFVAD 251 (280)
Q Consensus 176 ~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~---~~~~~~ 251 (280)
.+.+++.+...+++.+++++++||||||.+++.+++++|+++|++++++||+||+|.+|.++...... .. ....+.
T Consensus 163 ~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T d1yaaa_ 163 LNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242 (412)
T ss_dssp HHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred chhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcccc
Confidence 99999999877777789999999999999999999999999999999999999999999996422111 11 122234
Q ss_pred CCeEEEEecccccccccccccceEEEEc
Q 023599 252 GGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 252 ~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+++|++.|+||.|+++|||+||++++.
T Consensus 243 ~~~~i~~~s~SK~~~~~G~RiG~~~~~~ 270 (412)
T d1yaaa_ 243 VSPVFVCQSFAKNAGMYGERVGCFHLAL 270 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred CCCeEEEEecCCccccCcCceEEEEEch
Confidence 5699999999999999999999999874
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.6e-47 Score=340.43 Aligned_cols=259 Identities=41% Similarity=0.702 Sum_probs=222.3
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSA 96 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia 96 (280)
||++++..|.++|+.+++.+++++++++|||++|.+.|+.+.++..++++++.+.+..+....++|.|..|.++||++++
T Consensus 1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia 80 (397)
T d3tata_ 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred CcccCCCCCCCcHHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHH
Confidence 68899999999999999999888888899999998878888888889999998887654455678999999999999999
Q ss_pred HHHhCCCCccccCCCeEEeecccchhH----HHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCC
Q 023599 97 KLIFGADSPAIKENRVSTVQCLSGSGS----LRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTN 172 (280)
Q Consensus 97 ~~l~~~~~~~~~~~~i~~v~t~g~~~a----l~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~ 172 (280)
+++.+.++..+.++++.+ +.|++++ +.++ +..++.|||+|++++|+|..|...++.+|++++.+|+.++.++
T Consensus 81 ~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~--~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~ 156 (397)
T d3tata_ 81 PLLFGADHPVLKQQRVAT--IQTLGGSGALKVGAD--FLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATN 156 (397)
T ss_dssp HHHTCSSCHHHHTTCEEE--CCBSHHHHHHHHHHH--HHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTS
T ss_pred HHHhhccCCcCCcCcEEE--ecCchhHHHHHHHHH--HhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhcc
Confidence 999999988888899887 4444443 3333 5566889999999999999999999999999999999655567
Q ss_pred CcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcC
Q 023599 173 GLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADG 252 (280)
Q Consensus 173 ~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 252 (280)
..|.+.+.+.+...+++.++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+......+........
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 236 (397)
T d3tata_ 157 GVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAG 236 (397)
T ss_dssp SCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTT
T ss_pred ccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcC
Confidence 78999998888766566679999999999999999999999999999999999999999999997433333444444566
Q ss_pred CeEEEEecccccccccccccceEEEEc
Q 023599 253 GECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 253 ~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++++++.|+||+|+++|||+||++++.
T Consensus 237 ~~~i~~~s~SK~~~~~G~RiG~~~~~~ 263 (397)
T d3tata_ 237 LPALVSNSFSKIFSLYGERVGGLSVMC 263 (397)
T ss_dssp CCCEECBCCHHHHTBTTTCCBCCEEEC
T ss_pred CceEEEecCcccccccCccccccccch
Confidence 799999999999999999999998764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=1.2e-45 Score=333.21 Aligned_cols=266 Identities=48% Similarity=0.828 Sum_probs=227.5
Q ss_pred CccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHH
Q 023599 14 GDSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNK 93 (280)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~ 93 (280)
+||+|+++++.++++|+.++.+++.++++++|||++|.+.|+++.+++.++++++.+.+..+....++|.|..|.++||+
T Consensus 2 ~~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lre 81 (412)
T d1ajsa_ 2 PPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRT 81 (412)
T ss_dssp CCCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred CcChhhhCCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHH
Confidence 68999999999999999999999988888999999998878888888889999998887754555678999999999999
Q ss_pred HHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHH-----hhcCCCEEEEeCCCCCChHHHHHHcCCeeeEE-Eee
Q 023599 94 LSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLA-----KHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTY-HYY 167 (280)
Q Consensus 94 ~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~-----~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v-~~~ 167 (280)
++++++.+.++..+..+++.+++|.|+++++..+..++. ++.|||+|++++|+|+.|...++..|++.+.+ +..
T Consensus 82 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~ 161 (412)
T d1ajsa_ 82 CASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYW 161 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECE
T ss_pred HHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccc
Confidence 999999999988888898888778888888777643332 25799999999999999999999999987655 443
Q ss_pred cCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCC-ChhHHH
Q 023599 168 DPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDA-DALPVR 246 (280)
Q Consensus 168 ~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~ 246 (280)
+++.+..|++.+++.+...+++.+++++++||||||.+++.+++++|+++|++|+++||+||+|.++.++... ...+..
T Consensus 162 ~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~ 241 (412)
T d1ajsa_ 162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR 241 (412)
T ss_dssp ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred ccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhh
Confidence 4555778999998888766666779999999999999999999999999999999999999999999996422 222334
Q ss_pred HhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
...+..++++++.|+||.++++|||+||+++..
T Consensus 242 ~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~ 274 (412)
T d1ajsa_ 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVA 274 (412)
T ss_dssp HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred hhhhhcccccccccccccccCCCCCccccccch
Confidence 445566789999999999999999999999864
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-45 Score=329.75 Aligned_cols=262 Identities=44% Similarity=0.780 Sum_probs=211.4
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSA 96 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia 96 (280)
||+++++.|+++|+++++.++.+.++++|||++|.+.|+++.+++.+.++++..++..+ ...++|.|..|.++||++++
T Consensus 1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~-~~~~~Y~p~~G~~~lR~aia 79 (396)
T d2q7wa1 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-ETTKNYLGIDGIPEFGRCTQ 79 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH-CCCCCCCCTTCCHHHHHHHH
T ss_pred CccccccCCCChHHHHHHHHhccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhC-CCCCCCCCCcCCHHHHHHHH
Confidence 58899999999999999988877788899999998888888888888998888877643 33668999999999999999
Q ss_pred HHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH
Q 023599 97 KLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 97 ~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 176 (280)
+++.++++....++.+..++|.|+.+++.++..++..+.+||.|++++|+|+.|...++..|++++.+++..++++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (396)
T d2q7wa1 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDF 159 (396)
T ss_dssp HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEeccccccccccccc
Confidence 99999988877788877766888888877775466667899999999999999999999999999999997666777788
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+.+......++.++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++......+.....+..++++
T Consensus 160 ~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T d2q7wa1 160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred chHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccc
Confidence 88888877766677899999999999999999999999999999999999999999999974333334444555677899
Q ss_pred EEecccccccccccccceEEEEc
Q 023599 257 VAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++.|+||.|+++|||+||++++.
T Consensus 240 ~~~s~sk~~~~~G~R~G~~~~~~ 262 (396)
T d2q7wa1 240 VASSYSKNFGLYNERVGACTLVA 262 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEEEC
T ss_pred ccccccccccccCCCccccccch
Confidence 99999999999999999999874
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=4.7e-45 Score=326.95 Aligned_cols=249 Identities=17% Similarity=0.113 Sum_probs=200.0
Q ss_pred ccccccccccCCC---hHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHH
Q 023599 15 DSAFEQVARAADI---PIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEF 91 (280)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~l 91 (280)
|.+.+++...++. .+.+.+++++ ..+.++|+|+.|+| ++ +.|+..++++.+.+. .+ ..+|++..|.++|
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~~-~~g~~vi~l~~G~p-~~---~~p~~v~~a~~~~~~--~~-~~~Y~~~~G~~~l 72 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAMK-AEGIDVCSFSAGEP-DF---NTPKHIVEAAKAALE--QG-KTRYGPAAGEPRL 72 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHHH-TTTCCCEECCCSSC-SS---CCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHH
T ss_pred CchhhHhhcCCcCHHHHHHHHHHHHH-HCCCCeEECCCCCC-CC---CCCHHHHHHHHHHHh--cC-CCCCCCCCCCHHH
Confidence 3344444444443 3556666774 35679999999996 33 344444444444444 33 4679999999999
Q ss_pred HHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCC
Q 023599 92 NKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKT 171 (280)
Q Consensus 92 r~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~ 171 (280)
|+++++++...++..+++++|++ |+|+++++.++ +.+++.+||+|++++|+|..|...++..|++++.+++..+++
T Consensus 73 R~aia~~~~~~~g~~~~~~~i~i--t~G~~~al~~~--~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~ 148 (388)
T d1j32a_ 73 REAIAQKLQRDNGLCYGADNILV--TNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQ 148 (388)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGT
T ss_pred HHHHHHHHHHhcccCCCCceEEE--cCCHHHHHHHH--HHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccc
Confidence 99999998877777788899998 99999999999 788899999999999999999999999999999999855556
Q ss_pred CCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh-h
Q 023599 172 NGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV-A 250 (280)
Q Consensus 172 ~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~ 250 (280)
+.+|++++++++.+++ ++++++|||||||.+++.+++++|+++|++++++||+||+|.++.++.. ...++.... .
T Consensus 149 ~~~d~~~l~~~~~~~~---~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~-~~~s~~~~~~~ 224 (388)
T d1j32a_ 149 FKVSPEQIRQAITPKT---KLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA-QHLSIGAASPE 224 (388)
T ss_dssp TCCCHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSCHH
T ss_pred cCCCHHHHHHhCCCCC---eEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCC-CCCCHHHhCcc
Confidence 8899999999887543 4888999999999999999999999999999999999999999999643 333333322 2
Q ss_pred cCCeEEEEecccccccccccccceEEEEc
Q 023599 251 DGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 251 ~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
..+++|+++||||+|++||+|+||++.+.
T Consensus 225 ~~~~~i~~~S~SK~~~~~GlRvG~~~~~~ 253 (388)
T d1j32a_ 225 AYERSVVCSGFAKTYAMTGWRVGFLAGPV 253 (388)
T ss_dssp HHHTEEEEEESTTTTTCTTTCCEEEECCH
T ss_pred cccceeEecCChhhhhcchhHeEEEEECH
Confidence 23589999999999999999999998653
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.7e-44 Score=322.55 Aligned_cols=242 Identities=17% Similarity=0.141 Sum_probs=197.2
Q ss_pred ccccccCCChHHHH---HHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHH
Q 023599 19 EQVARAADIPIYAV---MAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLS 95 (280)
Q Consensus 19 ~~~~~~~~~~~~~~---~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~i 95 (280)
.++....+.++.++ +++++ .++.++|+|+.|+| ++ +.|....+++.+.+. .+ .++|++..|.++||+++
T Consensus 6 ~r~~~~~~s~~~~i~~~a~~~~-~~G~~vi~l~~g~p-~~---~~p~~i~~a~~~~~~--~~-~~~Y~~~~G~~~lR~~i 77 (382)
T d1b5pa_ 6 RRVQAMKPSATVAVNAKALELR-RQGVDLVALTAGEP-DF---DTPEHVKEAARRALA--QG-KTKYAPPAGIPELREAL 77 (382)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHH-HTTCCCEECCCSSC-SS---CCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHH-hCCCCeEECCCCCC-CC---CCCHHHHHHHHHHHh--cC-CcCCCCCCCCHHHHHHH
Confidence 33445555555444 34453 35778999999996 33 344444444444444 33 56899999999999999
Q ss_pred HHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcC
Q 023599 96 AKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLD 175 (280)
Q Consensus 96 a~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d 175 (280)
++|+...++..+++++|++ |+|+++++..+ +.+++.+||.|++++|+|..|...++..|++++.+++.+++++.+|
T Consensus 78 a~~~~~~~~~~~~~~~i~i--t~G~~~al~~~--~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 153 (382)
T d1b5pa_ 78 AEKFRRENGLSVTPEETIV--TVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPD 153 (382)
T ss_dssp HHHHHHTTCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC
T ss_pred Hhhhhhhccccccccccee--cCCHHHHHHHH--HHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCC
Confidence 9999888777788999998 99999999999 7888999999999999999999999999999999998555568899
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE
Q 023599 176 FQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255 (280)
Q Consensus 176 ~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 255 (280)
++.+++++.++ ..+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++.. ...+. ....+++
T Consensus 154 ~~~l~~~~~~~---~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~---~~~~~~~ 226 (382)
T d1b5pa_ 154 PERVRRAITPR---TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-HFSPG---RVAPEHT 226 (382)
T ss_dssp HHHHHTTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGG---GTCTTTE
T ss_pred HHHHHHhCCCC---CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCC-CCCHH---HcCCCCE
Confidence 99999987654 34888999999999999999999999999999999999999999999643 22221 1234699
Q ss_pred EEEecccccccccccccceEEEEc
Q 023599 256 LVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 256 i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
|+++||||+|++||+|+||++.+.
T Consensus 227 i~~~s~SK~~~~~GlR~G~~~~~~ 250 (382)
T d1b5pa_ 227 LTVNGAAKAFAMTGWRIGYACGPK 250 (382)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCH
T ss_pred EEEecchhhccCcHhheEEEEECH
Confidence 999999999999999999998753
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.7e-44 Score=321.62 Aligned_cols=243 Identities=17% Similarity=0.167 Sum_probs=196.7
Q ss_pred cccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHH
Q 023599 20 QVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLI 99 (280)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l 99 (280)
++...++..|.++.+... ..+++|+|+.|+| ++ ++|....+.+.+.+. .+ ..+|++..|.++||+++|+|+
T Consensus 5 ~~~~~~~s~ir~~~~~~~--~~~dvi~l~~g~p-~~---~~p~~v~~~~~~a~~--~~-~~~Y~~~~G~~~lr~aia~~~ 75 (388)
T d1gdea_ 5 RLELVSASEIRKLFDIAA--GMKDVISLGIGEP-DF---DTPQHIKEYAKEALD--KG-LTHYGPNIGLLELREAIAEKL 75 (388)
T ss_dssp HHHHSCCCHHHHHHHHHH--HCTTCEECCCCSC-CS---CCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHHHHHH
T ss_pred hhhhCCccHHHHHHHHHh--CCCCeEECCCCCC-CC---CCCHHHHHHHHHHHh--cC-ccCCCCCcCCHHHHHHHHHHH
Confidence 344456677877776554 3468999999996 33 344444444444444 33 467999999999999999998
Q ss_pred hCCCCc-cccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHH
Q 023599 100 FGADSP-AIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 100 ~~~~~~-~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 178 (280)
...++. ...+++|++ |+|+++++.++ +.+++.+||+|++++|+|..|...++..|++++.+++..++++++|++.
T Consensus 76 ~~~~~~~~~~~~~i~~--t~G~~~~l~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 151 (388)
T d1gdea_ 76 KKQNGIEADPKTEIMV--LLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDE 151 (388)
T ss_dssp HHHHCCCCCTTTSEEE--ESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHH
T ss_pred HhhccccCCChheeee--ccCcchHHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHH
Confidence 653332 334678888 99999999999 8888999999999999999999999999999999998555568999999
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
|++.+++++ ++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++. ....++.++....+++|++
T Consensus 152 l~~~~~~~~---~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~-~~~~~~~~~~~~~~~~i~~ 227 (388)
T d1gdea_ 152 LKKYVTDKT---RALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDD-ARHYSIASLDGMFERTITV 227 (388)
T ss_dssp HHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTT-CCCCCGGGSTTCGGGEEEE
T ss_pred HHHhCccCC---eEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhcc-CCCCChhhccCCCCeEEEE
Confidence 999886543 488899999999999999999999999999999999999999998863 2333444554445699999
Q ss_pred ecccccccccccccceEEEEc
Q 023599 259 QSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+||||+|++||+|+||+++..
T Consensus 228 ~S~SK~~~~~GlR~G~ii~~~ 248 (388)
T d1gdea_ 228 NGFSKTFAMTGWRLGFVAAPS 248 (388)
T ss_dssp EESTTTTTCGGGCCEEEECCH
T ss_pred eCChhhccCccccEEEEEeec
Confidence 999999999999999998753
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.1e-43 Score=318.51 Aligned_cols=259 Identities=36% Similarity=0.609 Sum_probs=217.4
Q ss_pred ccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHH
Q 023599 17 AFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSA 96 (280)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia 96 (280)
+|+++.+.++++|+++++.++++.++++|||++|.+.|+++.+++.+.++++.+++.++.. .++|.|..|.++||++++
T Consensus 1 ~~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~-~~~Y~p~~G~~~lr~aia 79 (394)
T d2ay1a_ 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET-TKTYAGLSGEPEFQKAMG 79 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC-CCCCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCC-CCCCCCCCCCHHHHHHHH
Confidence 4778889999999999999988888899999999988889998989999999888874333 578999999999999999
Q ss_pred HHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCH
Q 023599 97 KLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDF 176 (280)
Q Consensus 97 ~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~ 176 (280)
+++.+.+.....++.++ |.|++++..+...++....+||.|++++|+|+.|...++.+|++++.+++.+++++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~ 156 (394)
T d2ay1a_ 80 ELILGDGLKSETTATLA---TVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF 156 (394)
T ss_dssp HHHHGGGCCGGGEEEEE---EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred HHHhcccccccccccee---ccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccc
Confidence 99987776544444443 566665555443366778899999999999999999999999999999986666677888
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 177 QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 177 ~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
+.+++.....+++.+++++++||||||.+++.+++++|+++|++|+++||+||+|++|.|+................+++
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T d2ay1a_ 157 EGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVL 236 (394)
T ss_dssp HHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEE
T ss_pred hhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccc
Confidence 88888887766677899999999999999999999999999999999999999999999974322222333333456899
Q ss_pred EEecccccccccccccceEEEEc
Q 023599 257 VAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
++.|+||.++++|||+||+++..
T Consensus 237 ~~~s~sk~~~~~G~R~G~~~~~~ 259 (394)
T d2ay1a_ 237 IAASCSKNFGIYRERTGCLLALC 259 (394)
T ss_dssp EEEECTTTTTCGGGCEEEEEEEC
T ss_pred ccccccccccCCcccccchhhch
Confidence 99999999999999999998864
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1e-42 Score=312.33 Aligned_cols=233 Identities=14% Similarity=0.090 Sum_probs=192.3
Q ss_pred HHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCC
Q 023599 32 VMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENR 111 (280)
Q Consensus 32 ~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~ 111 (280)
.+++++. .+.++|+|++|+|.. ..+++|....+++.+.+. .+ ..+|++..|.++||+++++++...++..+++++
T Consensus 21 ~a~~l~~-~G~~vi~l~~G~P~~-~df~~p~~i~~a~~~a~~--~~-~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~ 95 (395)
T d1xi9a_ 21 PARELEK-KGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIK--EG-HNYYGDSEGLPELRKAIVEREKRKNGVDITPDD 95 (395)
T ss_dssp CHHHHHH-TTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHH--TT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred HHHHHHH-CCCCeEECCCCCCCC-CCCCCCHHHHHHHHHHHh--cC-CCCCCCCCCCHHHHHHHHHhhhhcccccccccc
Confidence 3445533 567899999999722 223344444444444443 33 467999999999999999999877777778899
Q ss_pred eEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcE
Q 023599 112 VSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAI 191 (280)
Q Consensus 112 i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 191 (280)
|++ |+|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++..++++.+|++.+++.+.+++ .
T Consensus 96 i~i--~~G~~~~~~~~--~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~---~ 168 (395)
T d1xi9a_ 96 VRV--TAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT---K 168 (395)
T ss_dssp EEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE---E
T ss_pred ccc--ccccchhhhhh--hhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccc---c
Confidence 998 99999999999 8888999999999999999999999999999999998666678999999999886543 4
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGER 271 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 271 (280)
+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++.. ..+...+ ....++|+++||||+|++||||
T Consensus 169 ~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~-~~~~~vi~~~S~SK~~~~~GlR 245 (395)
T d1xi9a_ 169 AIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE--HISPGSL-TKDVPVIVMNGLSKVYFATGWR 245 (395)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC--CCCHHHH-CSSSCEEEEEESTTTTCCGGGC
T ss_pred EEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccc--ccchhhc-CCCCCEEEEeCcchhcccchhh
Confidence 888999999999999999999999999999999999999999998642 2222333 3346899999999999999999
Q ss_pred cceEEEEc
Q 023599 272 VGALSVVR 279 (280)
Q Consensus 272 vG~~v~~~ 279 (280)
+||++++.
T Consensus 246 vG~~~~~~ 253 (395)
T d1xi9a_ 246 LGYMYFVD 253 (395)
T ss_dssp CEEEEEEC
T ss_pred cEeeEecC
Confidence 99998764
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.1e-41 Score=306.98 Aligned_cols=245 Identities=20% Similarity=0.204 Sum_probs=194.3
Q ss_pred CChHHHHHHHhhcCCC-CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCC-
Q 023599 26 DIPIYAVMAAFREDPS-PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGAD- 103 (280)
Q Consensus 26 ~~~~~~~~~~~~~~~~-~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~- 103 (280)
-.++..+.+.++..+. .++|+|++|+| +.+.+..+.+.+.++.++... ....++|++..|.++||+++|+|+.++.
T Consensus 13 ~~pir~~~~~~~~~~~~~~vI~L~~G~p-~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~G~~~LReaia~~~~~~~~ 90 (412)
T d1bw0a_ 13 FNPIRTVSDNAKPSPSPKPIIKLSVGDP-TLDKNLLTSAAQIKKLKEAID-SQECNGYFPTVGSPEAREAVATWWRNSFV 90 (412)
T ss_dssp CCHHHHHHHTCCCCCSCSCCEECCCCCT-TTTSCSCCCHHHHHHHHHHHH-TTCSSSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHhcCCCCCCCCcEECcCCCC-CCCCCccccHHHHHHHHHHhh-CCCCCCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 3567666666654333 46899999997 544444455555444444332 3345789999999999999999986542
Q ss_pred -----CccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHH
Q 023599 104 -----SPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 104 -----~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 178 (280)
+..+++++|++ |+|+++++.++ +.+++.+||+|++++|+|..|...++..|++++.+++..++++..+++.
T Consensus 91 ~~~~~~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~ 166 (412)
T d1bw0a_ 91 HKEELKSTIVKDNVVL--CSGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDE 166 (412)
T ss_dssp CSTTTGGGCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHH
T ss_pred cccccCCCCCCCeEEE--ecccccchhhh--hhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHH
Confidence 34567899999 99999999999 8888999999999999999999999999999999999555568889999
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh--hhcCCeEE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF--VADGGECL 256 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~~~~i 256 (280)
+++...+.+ ++++++|||||||.+++.+++++|+++|++++++||+||+|.++.++...+....... .+...+++
T Consensus 167 l~~~~~~~~---~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
T d1bw0a_ 167 IRRLKDDKT---KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRV 243 (412)
T ss_dssp HHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEE
T ss_pred HHhhhhccc---cccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccc
Confidence 998775543 4888899999999999999999999999999999999999999999643222111111 12234789
Q ss_pred EEecccccccccccccceEEEEc
Q 023599 257 VAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 257 ~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+++||||.|+++|||+||++++.
T Consensus 244 ~~~s~SK~~~~~G~RvG~~~~~~ 266 (412)
T d1bw0a_ 244 ILGGTAKNLVVPGWRLGWLLYVD 266 (412)
T ss_dssp EEEESTTTTSCGGGCCEEEEEEC
T ss_pred cccccCccCccCCCCcccccccc
Confidence 99999999999999999999864
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-41 Score=300.69 Aligned_cols=236 Identities=19% Similarity=0.141 Sum_probs=192.8
Q ss_pred ChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCcc
Q 023599 27 IPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPA 106 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~ 106 (280)
..+.+.++.++. ++.++|+|+.|+| + .++|....+++.+.+. .+ .++|++..|.++||+++++++...++..
T Consensus 14 ~~~~~~a~~~~~-~G~~vI~l~~G~p-~---~~~p~~i~~~~~~~~~--~~-~~~Y~~~~G~~~lR~aia~~~~~~~~~~ 85 (375)
T d1o4sa_ 14 MELDAKAKALIK-KGEDVINLTAGEP-D---FPTPEPVVEEAVRFLQ--KG-EVKYTDPRGIYELREGIAKRIGERYKKD 85 (375)
T ss_dssp HHHHHHHHHHHH-TTCCCEECCCSSC-S---SCCCHHHHHHHHHHHT--TC-CCCCCCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH-CCCCeEECCCcCC-C---CCCCHHHHHHHHHHHh--cC-CcCCCCCcCCHHHHHHHHhhhhhccccc
Confidence 345555556643 4678999999996 3 3344444444444443 33 4679999999999999999987766667
Q ss_pred ccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC
Q 023599 107 IKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA 186 (280)
Q Consensus 107 ~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 186 (280)
++++++++ |+|+++++.++ +.+++.+||+|++++|+|..|...+...|...+.++....+++.+|.+.++....++
T Consensus 86 ~~~~~i~~--t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
T d1o4sa_ 86 ISPDQVVV--TNGAKQALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 161 (375)
T ss_dssp CCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT
T ss_pred cccccccc--cCcHHHHHHHH--HHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccC
Confidence 78899998 99999999999 888899999999999999999999999999999998855556888888888765543
Q ss_pred CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 187 PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 187 ~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
..+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++.. ........+..+++|+++||||+|+
T Consensus 162 ---~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~i~~~S~SK~~~ 236 (375)
T d1o4sa_ 162 ---TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE--FTSILDVSEGFDRIVYINGFSKSHS 236 (375)
T ss_dssp ---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC--CCCHHHHCSSSTTEEEEEESTTTTT
T ss_pred ---ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccc--ccccccccCCCCCEEEEeechhhcc
Confidence 44899999999999999999999999999999999999999999988642 2222344455679999999999999
Q ss_pred ccccccceEEEEc
Q 023599 267 LYGERVGALSVVR 279 (280)
Q Consensus 267 ~~G~RvG~~v~~~ 279 (280)
+||+|+||+++..
T Consensus 237 l~G~R~G~~~~~~ 249 (375)
T d1o4sa_ 237 MTGWRVGYLISSE 249 (375)
T ss_dssp CGGGCCEEEECCH
T ss_pred CCccccccccccc
Confidence 9999999998753
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=6.8e-41 Score=302.50 Aligned_cols=250 Identities=15% Similarity=0.070 Sum_probs=195.7
Q ss_pred ccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHH
Q 023599 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94 (280)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ 94 (280)
|.+..++...++....+..+...+ .++|||+.|+| +.+ +|....+++.+.+.......++|++..|.++||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~I~L~~G~P-d~~---~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lRea 74 (418)
T d2r5ea1 2 FDLPKRYQGSTKSVWVEYIQLAAQ---YKPLNLGQGFP-DYH---APKYALNALAAAANSPDPLANQYTRGFGHPRLVQA 74 (418)
T ss_dssp CCCCGGGTTCCCCHHHHHHHHHHH---HCCEECSSSCC-SSC---CCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHH
T ss_pred CchhhhhcCCCCCHHHHHHHHhcC---CCCEEccCCCC-CCC---CCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHH
Confidence 455567777777766565544432 47899999997 433 34434444444343212234679999999999999
Q ss_pred HHHHHhCCCCcccc-CCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC---
Q 023599 95 SAKLIFGADSPAIK-ENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK--- 170 (280)
Q Consensus 95 ia~~l~~~~~~~~~-~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~--- 170 (280)
||+|+.+.++..+. .++|++ |+|+++|+.++ +..++.+||.|++++|+|+.|...+...|.+++.+++..+.
T Consensus 75 iA~~~~~~~g~~~~p~~~I~i--t~G~~~al~~~--~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 150 (418)
T d2r5ea1 75 LSKLYSQLVDRTINPMTEVLV--TVGAYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGG 150 (418)
T ss_dssp HHHHHHHHHTSCCCTTTSEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSS
T ss_pred HHHHHHHHhCCCCCccceEEE--cCCCchhhhhh--hhhccccccceeccccccchhhHHHHHcCCeEEEEEeccccccc
Confidence 99998766665566 488988 99999999999 88889999999999999999999999999999999984322
Q ss_pred -----CCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 171 -----TNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 171 -----~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
.+..+.+.+.+.... +.++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+++. ...++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~~~s~ 226 (418)
T d2r5ea1 151 TISSADWVLDNNELEALFNE---KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF-EHIRI 226 (418)
T ss_dssp CEEGGGEECCHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCG
T ss_pred chhhhhhhhhHHHHhhhhhc---cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCC-ccccc
Confidence 134567777776543 345888899999999999999999999999999999999999999999643 33344
Q ss_pred HHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
..+.+...++++++|+||.|++||+|+||+++++
T Consensus 227 ~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~ 260 (418)
T d2r5ea1 227 CTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE 260 (418)
T ss_dssp GGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCH
T ss_pred cccccccceeeeeecCCccccCCCcccccccccc
Confidence 4554555699999999999999999999998753
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-40 Score=297.98 Aligned_cols=244 Identities=18% Similarity=0.114 Sum_probs=190.2
Q ss_pred cccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHH
Q 023599 20 QVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLI 99 (280)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l 99 (280)
|+....+.+..+..+.. .++++|+|++|+| +. +.| +.+.++.++...+....++|++..|.++||+++++++
T Consensus 6 r~~~~~~~~~~~~~~~~---~~~dvI~l~~G~p-~~---~~p-~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~ 77 (418)
T d1w7la_ 6 RLDGIDYNPWVEFVKLA---SEHDVVNLGQGFP-DF---PPP-DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFF 77 (418)
T ss_dssp GGTTCCCCTHHHHHHHH---HTSCCEECCCCSC-SS---CCC-HHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHh---CCCCCEECCCCCC-CC---CCC-HHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHH
Confidence 44444455565555444 3468999999996 33 233 4444444444422233467999999999999999998
Q ss_pred hCCCCcccc-CCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC---------
Q 023599 100 FGADSPAIK-ENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP--------- 169 (280)
Q Consensus 100 ~~~~~~~~~-~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~--------- 169 (280)
....+..++ .++|++ |+|+++++.++ +.+++.+||.|++++|+|+.|...+...|++++.++....
T Consensus 78 ~~~~g~~~~~~~~I~i--t~G~~~al~~~--~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 153 (418)
T d1w7la_ 78 GELLGQEIDPLRNVLV--TVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGS 153 (418)
T ss_dssp HHHHTCCCCHHHHEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEE
T ss_pred HHHhCCCCCcccceee--ccCcHHHHHHH--HHhhccCCceeeccccccchhHHHHHHcCCEeecccccccccccccccc
Confidence 765455455 368888 99999999999 8888999999999999999999999999999998886321
Q ss_pred -CCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHh
Q 023599 170 -KTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMF 248 (280)
Q Consensus 170 -~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 248 (280)
+++.+|.+.+..... ++.++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+. ....++.++
T Consensus 154 ~~~~~~d~~~~~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~-~~~~~~~~~ 229 (418)
T d1w7la_ 154 SSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG-HQHISIASL 229 (418)
T ss_dssp GGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGS
T ss_pred ccCcccchhhhhcccc---ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCC-CCCCCHHHc
Confidence 234456666655443 344588999999999999999999999999999999999999999999964 344455666
Q ss_pred hhcCCeEEEEecccccccccccccceEEEEc
Q 023599 249 VADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 249 ~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+..++++++.|+||.|++||+|+||++++.
T Consensus 230 ~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~ 260 (418)
T d1w7la_ 230 PGMWERTLTIGSAGKTFSATGWKVGWVLGPD 260 (418)
T ss_dssp TTTGGGEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred cccccccceecccCccccCCCCcccccccch
Confidence 5556799999999999999999999998753
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1.5e-39 Score=291.43 Aligned_cols=226 Identities=12% Similarity=0.051 Sum_probs=182.1
Q ss_pred CCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 39 DPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 39 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
..+.++|+|++|+| |++ +|+..++++.+.+. .+ .++|+ .|.++||+++++|+..+++..+++++|++ |+
T Consensus 28 ~~g~~vi~l~~g~p-df~---~p~~v~~al~~~~~--~~-~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~v--t~ 96 (394)
T d1c7na_ 28 EVGNEVVPLSVADM-EFK---NPPELIEGLKKYLD--ET-VLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIIN--TA 96 (394)
T ss_dssp TCCTTCCCCCSSSC-SSC---CCHHHHHHHHHHHH--HC-CCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEE--ES
T ss_pred hcCCCeEEccCCCC-CCC---CCHHHHHHHHHHHh--CC-CcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEe--ec
Confidence 34578999999997 543 45555555544444 33 45674 47899999999999877777778899998 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCC-CCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPK-TNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
|+++++.++ +.+++.|||+|+++.|.|.++...+...|.+.+.++....+ .+.+|.+.++.+.... +.++++++|
T Consensus 97 G~~~al~~~--~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~i~l~~ 172 (394)
T d1c7na_ 97 GVVPAVFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK--NNKALLFCS 172 (394)
T ss_dssp SHHHHHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT--TEEEEEEES
T ss_pred cchhhhhhh--hccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccc--cceEEEecc
Confidence 999999999 88899999999999999999999999999998888763333 3667888888876533 345889999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
||||||.+++.+++++|+++|++++++||+||+|.++.++................+++++.|+||+|+++|||+||+++
T Consensus 173 P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~ 252 (394)
T d1c7na_ 173 PHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIII 252 (394)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred cccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccc
Confidence 99999999999999999999999999999999999999964322211122223346899999999999999999999987
Q ss_pred Ec
Q 023599 278 VR 279 (280)
Q Consensus 278 ~~ 279 (280)
+.
T Consensus 253 ~~ 254 (394)
T d1c7na_ 253 KN 254 (394)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.6e-39 Score=289.25 Aligned_cols=237 Identities=16% Similarity=0.131 Sum_probs=186.2
Q ss_pred ccccCCChHHHH---HHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHH
Q 023599 21 VARAADIPIYAV---MAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAK 97 (280)
Q Consensus 21 ~~~~~~~~~~~~---~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~ 97 (280)
+.+..+++|+++ +...+ ..+.++|+|+.|+| + .++|....+++ .+.. ...++|++..|.++||+++++
T Consensus 5 ~~~~~~~~i~~l~~~a~~~~-~~g~~vi~l~~G~p-~---~~~p~~~~~al-~~~~---~~~~~Y~~~~G~~~LR~aia~ 75 (389)
T d2gb3a1 5 VLLTEESPIRKLVPFAEMAK-KRGVRIHHLNIGQP-D---LKTPEVFFERI-YENK---PEVVYYSHSAGIWELREAFAS 75 (389)
T ss_dssp HHSCCCCTTGGGHHHHHHHH-HTTCEEEECSSCCC-C---SCCCTHHHHHH-HHTC---CSSCCCCCTTCCHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHH-HcCCCEEECCCCCC-C---CCCCHHHHHHH-HhcC---CCCCCCCCCcCCHHHHHHHHH
Confidence 444444445443 33343 25678999999997 3 33454444443 3322 236789999999999999999
Q ss_pred HHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHH
Q 023599 98 LIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 98 ~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~ 177 (280)
|+...++..+++++|++ |+|+++++.++ +..++.+||.|++++|+|..+...++..|+.++.++. +.+++..+.+
T Consensus 76 ~~~~~~g~~~~~~~I~i--t~G~~~~l~~~--~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~ 150 (389)
T d2gb3a1 76 YYKRRQRVDVKPENVLV--TNGGSEAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTR-RMEEGFAIPQ 150 (389)
T ss_dssp HHHHTSCCCCCGGGEEE--ESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEEC-CGGGTSCCCT
T ss_pred HHHHhcCCCcccceEEe--ccccccccccc--ccccccCCCeEEEeCCCCccccccccccCcccccccc-ccccccchhh
Confidence 99888777788999998 99999999999 7888999999999999999999999999999999988 4444444444
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLV 257 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 257 (280)
.+.....+ +..+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++.. .. .......+++++
T Consensus 151 ~~~~~~~~---~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~---~~~~~~~~~~~v 223 (389)
T d2gb3a1 151 NLESFINE---RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FA---SALSIESDKVVV 223 (389)
T ss_dssp TGGGGCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CC---CGGGSCCTTEEE
T ss_pred hhhhhccc---CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccc-cc---cccccccccccc
Confidence 44444333 345888999999999999999999999999999999999999999999642 21 122234568999
Q ss_pred EecccccccccccccceEEEE
Q 023599 258 AQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 258 ~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.|+||.|++||||+||++..
T Consensus 224 ~~s~sK~~~~~GlRiG~~~~~ 244 (389)
T d2gb3a1 224 IDSVSKKFSACGARVGCLITR 244 (389)
T ss_dssp EEESTTTTTCGGGCCEEEECS
T ss_pred cccccccccCcccceeeeecc
Confidence 999999999999999999864
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=8.6e-39 Score=287.12 Aligned_cols=240 Identities=13% Similarity=0.140 Sum_probs=189.5
Q ss_pred cCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhcc-CCCCCCCCCCCCCHHHHHHHHHHHhCC
Q 023599 24 AADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVND-LSADKEYLPITGLPEFNKLSAKLIFGA 102 (280)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~G~~~lr~~ia~~l~~~ 102 (280)
..+..|.++.+.. .++++|+|+.|.| ++ ..+|.+.++++..++.+. ....++|++..|.++||+++|+|+...
T Consensus 14 ~~~s~ire~~~~~---~~~~~i~l~~G~P-~~--~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~ 87 (403)
T d1wsta1 14 MKASEVRELLKLV---ETSDVISLAGGLP-AP--ETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKR 87 (403)
T ss_dssp CCCHHHHHHHHHH---TSSSCEECCCCCC-CG--GGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHh---CCCCcEECCCCCC-Cc--cccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHH
Confidence 3345566665544 3478999999997 32 345677887777765422 122467999999999999999999776
Q ss_pred CCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHH--
Q 023599 103 DSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGML-- 180 (280)
Q Consensus 103 ~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~-- 180 (280)
.+..+++++|++ |+|+++++.++ +.+++.+||+|++++|+|..|...+...|++++.++.. ++. .+...+.
T Consensus 88 ~g~~~~~~~I~i--t~G~~~al~~~--~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~-~~~--~~~~~~~~~ 160 (403)
T d1wsta1 88 YDIPMSKVEIMT--VAGSQQALDLI--GRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLD-DKG--MRVDLLEEK 160 (403)
T ss_dssp HCCCCTTCEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-TTE--ECHHHHHHH
T ss_pred hCCCCChHHeee--cccchHHHHHH--HHHHhhcCCccccCCCcchhhhHHHhhccccceeEeec-ccC--Ccccccccc
Confidence 666778899998 99999999999 77889999999999999999999999999999999983 332 2322222
Q ss_pred --HHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 181 --QDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 181 --~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
......++...++++++||||||.+++.+++++|+++|++|+++||+||+|.++.++.. ...++... +...+++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~-~~~~~~~~-~~~~~~i~~ 238 (403)
T d1wsta1 161 LEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGE-PTPPIKHF-DDYGRVIYL 238 (403)
T ss_dssp HHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCCGGGG-CSSSCEEEE
T ss_pred chhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCC-CCCccccc-CCCCcEEEE
Confidence 22333345567899999999999999999999999999999999999999999999642 33333332 345699999
Q ss_pred ecccccccccccccceEEEEc
Q 023599 259 QSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+||||.++ ||+|+||+++..
T Consensus 239 ~S~SK~~~-~G~RiG~~i~~~ 258 (403)
T d1wsta1 239 GTFSKILA-PGFRIGWVAAHP 258 (403)
T ss_dssp EESTTTTC-GGGCCEEEEECH
T ss_pred ccccceec-Ccccccccccch
Confidence 99999996 999999999753
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.2e-38 Score=279.02 Aligned_cols=241 Identities=16% Similarity=0.174 Sum_probs=190.1
Q ss_pred cccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHH
Q 023599 20 QVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLI 99 (280)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l 99 (280)
+++..... ++..+.++. ...++|||+.|.| ++ ++| +.++++..+... .+ .++|++..|.++||+++|+|+
T Consensus 7 ~~~~~~~~-~~~~~~~~a--~~~~~i~l~~G~P-d~---~~p-~~i~~a~~~~~~-~~-~~~Y~~~~G~~~LReaia~~~ 76 (382)
T d1u08a_ 7 KLPQLGTT-IFTQMSALA--QQHQAINLSQGFP-DF---DGP-RYLQERLAHHVA-QG-ANQYAPMTGVQALREAIAQKT 76 (382)
T ss_dssp SCCCCCCC-HHHHHHHHH--HHTTCEECCCSSC-SS---CCC-HHHHHHHHHHHH-TT-CCSCCCTTCCHHHHHHHHHHH
T ss_pred hCCCCCCc-HHHHHHHHh--ccCCCEEccCCCC-CC---CCC-HHHHHHHHHHHh-cC-CCCCCCCcCCHHHHHHHHHHH
Confidence 34444433 444444443 2358899999997 43 344 444444443332 33 578999999999999999998
Q ss_pred hCCCCccccCC-CeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHH
Q 023599 100 FGADSPAIKEN-RVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQG 178 (280)
Q Consensus 100 ~~~~~~~~~~~-~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~ 178 (280)
.+..+..+.++ +|++ |+|+++++.++ +.+++.+||.|++++|+|..+...+...|+....++. +++++.+|+++
T Consensus 77 ~~~~g~~~~~~~~I~v--t~G~~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~ 151 (382)
T d1u08a_ 77 ERLYGYQPDADSDITV--TAGATEALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQE 151 (382)
T ss_dssp HHHHSCCCCTTTTEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-CTTTCCCCHHH
T ss_pred HHHhCCCCCCCceEEe--ccchHHHHHHH--HhhcccccceEEEecccccchhhhhhhccccceeccc-ccccccCCHHH
Confidence 77655555555 5888 99999999999 8888999999999999999999999999999888887 56678889999
Q ss_pred HHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEE
Q 023599 179 MLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVA 258 (280)
Q Consensus 179 l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (280)
+++...+++ .+++++|||||||.+++.+++++|+++|++++++++.|++|..+.++..... +........+++|++
T Consensus 152 l~~~~~~~~---~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 227 (382)
T d1u08a_ 152 FAALLSERT---RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHA-SVLAHPQLRERAVAV 227 (382)
T ss_dssp HHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCC-CGGGSHHHHTTEEEE
T ss_pred HhhhhccCc---cEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccc-cccccccccCcEEEE
Confidence 998776543 4888899999999999999999999999999999999999999988643222 222333445689999
Q ss_pred ecccccccccccccceEEEEc
Q 023599 259 QSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 259 ~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.|+||.|++||+|+||+++++
T Consensus 228 ~s~SK~~~~pG~RiG~~v~~~ 248 (382)
T d1u08a_ 228 SSFGKTYHMTGWKVGYCVAPA 248 (382)
T ss_dssp EEHHHHTTCGGGCCEEEECCH
T ss_pred eeccccccCCcccchhhhccc
Confidence 999999999999999998754
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-37 Score=275.88 Aligned_cols=219 Identities=15% Similarity=0.017 Sum_probs=179.7
Q ss_pred eeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhH
Q 023599 44 KLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGS 123 (280)
Q Consensus 44 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~a 123 (280)
+|+|++|++ |++ .|+...++..+.+. .+ .++|++..| ++||+++++++..+.+..+++++|++ |+|++++
T Consensus 1 ~~~~~~~~~-df~---~p~~i~eal~~~~~--~~-~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~i--t~G~~~~ 70 (361)
T d1d2fa_ 1 LLPFTISDM-DFA---TAPCIIEALNQRLM--HG-VFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVY--GPSVIYM 70 (361)
T ss_dssp CEECCSSSC-SSC---CCHHHHHHHHHHHT--TC-CCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEE--ESCHHHH
T ss_pred CcCcCCCCC-CCC---CCHHHHHHHHHHHh--CC-CCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEE--eCCHHHH
Confidence 589999997 554 44444444444443 33 457988888 67999999999887777788899998 9999999
Q ss_pred HHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecC-CCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCC
Q 023599 124 LRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDP-KTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPT 202 (280)
Q Consensus 124 l~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPT 202 (280)
+..+ +.+++.+||+|++++|+|..|...++..|.+++.++.... +++.+|++.+++.+.+. +.++++++||||||
T Consensus 71 l~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~--~~~~i~l~~p~NPT 146 (361)
T d1d2fa_ 71 VSEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP--ECKIMLLCSPQNPT 146 (361)
T ss_dssp HHHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST--TEEEEEEESSCTTT
T ss_pred HHHH--hhhccccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccC--CceeEEeccccccc
Confidence 9999 7888999999999999999999999999999998887432 34668999999988653 34588889999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 203 GIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 203 G~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
|.+++.+++++|+++|++++++||+||+|.++.++.. ...++... ..++++++.|+||.|+++|+|+||+++..
T Consensus 147 G~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~--~~~~~v~~~s~SK~~~~~g~R~g~~~~~~ 220 (361)
T d1d2fa_ 147 GKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ-PHIPWSNV--ARGDWALLTSGSKSFNIPALTGAYGIIEN 220 (361)
T ss_dssp CCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS-CCCCGGGT--CCSSEEEEECSHHHHTCGGGCCEEEEECS
T ss_pred ccccchhhhhhhhhhhhhhheeeeecccccccccccc-cccccccc--cccccccccccccccccccccceeeecch
Confidence 9999999999999999999999999999999998632 22222222 34689999999999999999999998753
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=5e-37 Score=277.87 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=163.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCc--cccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSP--AIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA- 156 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~--~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~- 156 (280)
.+|++..|.++||++||+|+...++. .+++++|++ |+|+++++.++ +.+++.+||+|++++|+|..+...+..
T Consensus 77 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivi--t~G~~~al~~~--~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~ 152 (428)
T d1iaya_ 77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVM--AGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWR 152 (428)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEE--EEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTT
T ss_pred ccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEE--cCCHHHHHHHH--HHHhCCCCCEEEEccCCchHHHHHHHHh
Confidence 46999999999999999998766543 356889998 99999999999 788899999999999999999887764
Q ss_pred cCCeeeEEEeecCCCCCcCHHHHHHHHhc---CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 157 AGLAMKTYHYYDPKTNGLDFQGMLQDLGA---APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 157 ~G~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
.|++++++++...+++.+|.+.++.++.. ...+..+++++|||||||.+++.+++++|+++|++|+++||+||+|.+
T Consensus 153 ~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~ 232 (428)
T d1iaya_ 153 TGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAA 232 (428)
T ss_dssp TCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGG
T ss_pred cCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccc
Confidence 58999999984445689999988776532 334566888999999999999999999999999999999999999999
Q ss_pred cccCcCCChhHHHHhhh-------cCCeEEEEecccccccccccccceEEEE
Q 023599 234 FVMNMDADALPVRMFVA-------DGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-------~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.++. ..+.++.++.+ ..+++++++||||.|+++|+|+||++..
T Consensus 233 ~~~~~-~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~ 283 (428)
T d1iaya_ 233 TVFDT-PQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSF 283 (428)
T ss_dssp GCCSS-SCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEES
T ss_pred cccCc-ccccccccccchhhccccccceEEEEecCCCcccCCCccccccccc
Confidence 99964 33444444433 2458999999999999999999999864
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1e-37 Score=281.63 Aligned_cols=239 Identities=13% Similarity=0.168 Sum_probs=189.0
Q ss_pred cCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccC-CCCCCCCCCCCCHHHHHHHHHHHhCC
Q 023599 24 AADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL-SADKEYLPITGLPEFNKLSAKLIFGA 102 (280)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~G~~~lr~~ia~~l~~~ 102 (280)
..+..|.++++ ...++++|+|+.|.| |+ ..+|.+.+.++.+++.+.. ...++|++..|.++||++||+|+...
T Consensus 23 ~~~s~ir~~~~---~~~~~~~I~l~~G~P-d~--~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 96 (420)
T d1vp4a_ 23 MKSSIIREILK---FAADKDAISFGGGVP-DP--ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERM 96 (420)
T ss_dssp CCCCCHHHHTT---TTTSTTCEECCCCSC-CG--GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHH---HhCCCCcEecCCcCC-CC--ccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHH
Confidence 34556655543 235679999999997 32 3456677776666654221 23467999999999999999998766
Q ss_pred CCcc-ccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHH
Q 023599 103 DSPA-IKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQ 181 (280)
Q Consensus 103 ~~~~-~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 181 (280)
++.. +++++|++ |+|+++++.++ +..++.+||+|++++|+|..|...++..|++++.+++ ++. ++|++.++.
T Consensus 97 ~g~~~~~~~~I~i--t~G~~~al~~~--~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-~~~--~~~~~~l~~ 169 (420)
T d1vp4a_ 97 YGITGLDEDNLIF--TVGSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPL-EDD--GMDLNVLER 169 (420)
T ss_dssp HCCCSCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEE-ETT--EECHHHHHH
T ss_pred hCCCCCCHHHeEe--ccchhhhHHHH--HHhhhccccccccccccccchhHHHHHHhhhcccccc-ccc--ccccchhhh
Confidence 5543 57899998 99999999999 7888999999999999999999999999999999998 343 578887776
Q ss_pred HHhc---C---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE
Q 023599 182 DLGA---A---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255 (280)
Q Consensus 182 ~~~~---~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 255 (280)
.+.+ . .+...+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.++... ..+.... +..+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~-~~~~~~~-~~~~~~ 247 (420)
T d1vp4a_ 170 KLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET-VDPIFKI-GGPERV 247 (420)
T ss_dssp HHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC-CCCHHHH-HCTTTE
T ss_pred hhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcc-ccccccc-ccccce
Confidence 5532 1 233467888999999999999999999999999999999999999999996432 2222222 455789
Q ss_pred EEEecccccccccccccceEEEE
Q 023599 256 LVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 256 i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
++++|+||.++ +|||+||+++.
T Consensus 248 i~~~s~sk~~~-~G~RiG~~~~~ 269 (420)
T d1vp4a_ 248 VLLNTFSKVLA-PGLRIGMVAGS 269 (420)
T ss_dssp EEEEESTTTTC-GGGCEEEEECC
T ss_pred eEEeccccccc-ccccccccccc
Confidence 99999999885 99999999865
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=1.2e-36 Score=275.61 Aligned_cols=194 Identities=17% Similarity=0.171 Sum_probs=164.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCC--ccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADS--PAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA- 156 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~--~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~- 156 (280)
.+|++..|.++||+++|+|+....+ ..+++++|++ |+|+++++.++ +.+++.|||+|++++|+|..+...+..
T Consensus 78 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~i--t~G~~~al~~~--~~~l~~pGd~Vlv~~P~y~~~~~~~~~~ 153 (431)
T d1m7ya_ 78 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVL--TAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWR 153 (431)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEE--EEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTT
T ss_pred cCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEE--CCCHHHHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHh
Confidence 3599999999999999999876544 3456899998 99999999999 788899999999999999999888874
Q ss_pred cCCeeeEEEeecCCCCCcCHHHHHHHHhc---CCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC
Q 023599 157 AGLAMKTYHYYDPKTNGLDFQGMLQDLGA---APSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG 233 (280)
Q Consensus 157 ~G~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~ 233 (280)
.|++++++++..++++.+|.+.+++.+.+ ...+..+++++|||||||.+++.+++++|+++|++|+++||+||+|.+
T Consensus 154 ~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~ 233 (431)
T d1m7ya_ 154 TGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG 233 (431)
T ss_dssp TCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred cCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccc
Confidence 57899999984444688999999988764 234567899999999999999999999999999999999999999999
Q ss_pred cccCcCCChhHHHHhhhc---------CCeEEEEecccccccccccccceEEEE
Q 023599 234 FVMNMDADALPVRMFVAD---------GGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~---------~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.|+.. ...++.++.+. .+++|+++||||.|+++|+|+||++..
T Consensus 234 ~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~ 286 (431)
T d1m7ya_ 234 TAFSSP-SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSN 286 (431)
T ss_dssp GCCSSS-CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEES
T ss_pred cccCCC-CCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccc
Confidence 999642 33344443221 248999999999999999999999874
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.6e-36 Score=266.09 Aligned_cols=237 Identities=19% Similarity=0.189 Sum_probs=185.1
Q ss_pred ccccccccccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHH
Q 023599 15 DSAFEQVARAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKL 94 (280)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ 94 (280)
|.+..+....+.. ++..+..+.+ ..+.|||+.|.| +. ++|+..+++..+.+. . ..+|++..|.++||++
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~la~--~~~~I~ls~g~p-~~---~~p~~i~~al~~~l~--~--~~~Y~~~~G~~elr~a 69 (368)
T d1v2da_ 1 MRLHPRTEAAKES-IFPRMSGLAQ--RLGAVNLGQGFP-SN---PPPPFLLEAVRRALG--R--QDQYAPPAGLPALREA 69 (368)
T ss_dssp CCCCGGGGGC----CHHHHHHHHH--HHTCEECCCCSC-SS---CCCHHHHHHHHHHTT--T--SCSCCCTTCCHHHHHH
T ss_pred CCCChhhhhcCCC-HHHHHHHHhc--cCCCEEecCCCC-CC---CCCHHHHHHHHHHhh--c--ccCCCCCcCCHHHHHH
Confidence 4555666666654 4444444322 246899999996 33 344444444444333 2 4679999999999999
Q ss_pred HHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee-cCCCCC
Q 023599 95 SAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY-DPKTNG 173 (280)
Q Consensus 95 ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~ 173 (280)
||+++. +++++|++ |+|+++++..+ +..++.+||.|++++|+|..+...+...|.+++.+++. +.+++.
T Consensus 70 iA~~~~------~~~~~Iii--t~G~~~al~~~--~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 139 (368)
T d1v2da_ 70 LAEEFA------VEPESVVV--TSGATEALYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFR 139 (368)
T ss_dssp HHHHHT------SCGGGEEE--ESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEE
T ss_pred HHhhcc------cCCcceee--ccchHHHHHHH--hhccccccccccccCCcchhhhhHHHhcCCccceecccccccccc
Confidence 999973 34689998 99999999999 78889999999999999999999999999999888773 234578
Q ss_pred cCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 174 LDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 174 ~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
+|++.+++.+++.+ .+++++|||||||.+++.+++++|+++|++|++++|+||+|..+.++..... ......+
T Consensus 140 ~d~~~l~~~~~~~~---~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~----~~~~~~~ 212 (368)
T d1v2da_ 140 LDLSALEKALTPRT---RALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRR----LREFAPE 212 (368)
T ss_dssp CCHHHHHTTCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC----HHHHCTT
T ss_pred CCHHHHHHhhccCc---eEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccc----ccccccc
Confidence 99999999887654 3788899999999999999999999999999999999999998877532221 1223456
Q ss_pred eEEEEecccccccccccccceEEEEc
Q 023599 254 ECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
+++++.|+||.++++|+|+||+++..
T Consensus 213 ~~~~~~~~sk~~~~~G~R~g~~~~~~ 238 (368)
T d1v2da_ 213 RTFTVGSAGKRLEATGYRVGWIVGPK 238 (368)
T ss_dssp TEEEEEEHHHHTTCGGGCCEEEECCT
T ss_pred ccceeecccccccccccccccccccc
Confidence 88999999999999999999998754
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=5.3e-34 Score=251.63 Aligned_cols=227 Identities=15% Similarity=0.145 Sum_probs=173.1
Q ss_pred ccCCChHHHHHHHhhcCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCC
Q 023599 23 RAADIPIYAVMAAFREDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGA 102 (280)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~ 102 (280)
.+|++++.+.+.++.. +..++|||+.|+ |..++++..+++..+.+. . ...| |..|..+||+++|+++.
T Consensus 4 ~~hgg~~~~~~~~~g~-~p~~~idls~~~----np~~~p~~~~~a~~~~~~---~-~~~Y-p~~~~~~Lr~aia~~~~-- 71 (355)
T d1lc5a_ 4 TAHGGNIREPATVLGI-SPDQLLDFSANI----NPLGMPVSVKRALIDNLD---C-IERY-PDADYFHLHQALARHHQ-- 71 (355)
T ss_dssp CSSSCCCHHHHHHHTS-CGGGSEECSSCC----CTTCCCHHHHHHHHHTGG---G-GGSC-CCTTCHHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHhCC-ChhheEEccCCC----CCCCCCHHHHHHHHHHHH---H-hccC-CCCChHHHHHHHHHHhC--
Confidence 3567778888888854 334799999987 444455444444433322 1 3445 66688999999999972
Q ss_pred CCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHH
Q 023599 103 DSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQD 182 (280)
Q Consensus 103 ~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 182 (280)
+++++|++ ++|+++++.++ +.. ..|+.+++..|.|..|.......++.++.+++..++++.++ +.+++.
T Consensus 72 ----v~~~~I~~--~~g~~~~~~~~--~~~--~~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~ 140 (355)
T d1lc5a_ 72 ----VPASWILA--GNGETESIFTV--ASG--LKPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEA 140 (355)
T ss_dssp ----SCGGGEEE--ESSHHHHHHHH--HHH--HCCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHH
T ss_pred ----CCHHHEEe--cccHHHHHHHH--Hhh--hccccccccCCccceeccccccccccceeeeeeccCCccce-eeeeec
Confidence 35688988 99999988877 443 25667778889999999999999999999998444445555 556666
Q ss_pred HhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccc
Q 023599 183 LGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYS 262 (280)
Q Consensus 183 ~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 262 (280)
+.++++ +++++|||||||.+++.+++++|+++|++|++++|+||+|.++.++.. .. .......+++++++|||
T Consensus 141 ~~~~~~---~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~-~~---~~~~~~~~~~i~~~S~S 213 (355)
T d1lc5a_ 141 LTPDLD---CLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET-GF---IPALKDNPHIWVLRSLT 213 (355)
T ss_dssp CCTTCC---EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC-CS---GGGCTTCTTEEEEEEST
T ss_pred cccccc---eeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecc-cc---cccccccccceeecccc
Confidence 655544 888899999999999999999999999999999999999999988532 21 22233456999999999
Q ss_pred ccccccccccceEEEEc
Q 023599 263 KTMGLYGERVGALSVVR 279 (280)
Q Consensus 263 K~~~~~G~RvG~~v~~~ 279 (280)
|.||+||+|+||++++.
T Consensus 214 K~~~l~GlR~G~~i~~~ 230 (355)
T d1lc5a_ 214 KFYAIPGLRLGYLVNSD 230 (355)
T ss_dssp TTTTCTTTCCEEEECCC
T ss_pred cccccccccccceeccc
Confidence 99999999999999763
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2e-33 Score=246.15 Aligned_cols=204 Identities=17% Similarity=0.101 Sum_probs=159.7
Q ss_pred cCCCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 38 EDPSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 38 ~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
+.++.++|.|+.|+ |..+.|...++++.+.+. .. .++|+|..|.++||+++|+|+...+ +++++|++ |
T Consensus 15 ~~~~~d~~~l~~~e----np~~~p~~i~~~~~~~~~--~~-~~~~yp~~g~~~Lr~aia~~~~~~~---v~~d~I~i--t 82 (334)
T d2f8ja1 15 ETEKRDKTYLALNE----NPFPFPEDLVDEVFRRLN--SD-ALRIYYDSPDEELIEKILSYLDTDF---LSKNNVSV--G 82 (334)
T ss_dssp CCCCCCSEECSSCC----CSSCCCHHHHHHHHHHCC--TT-GGGSCCCSSCHHHHHHHHHHHTCSS---CCGGGEEE--E
T ss_pred cccCCCceEEECCC----CCCCCCHHHHHHHHHHhh--cc-hhcCCCCCCcHHHHHHHHHHhcccC---CCcceEEe--c
Confidence 34567999999998 556677777777766665 33 4567788999999999999986554 46799998 9
Q ss_pred ccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecC
Q 023599 118 LSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQAS 197 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~ 197 (280)
+|++++++++ + .+||+|++++|+|..|...++.+|++++.+|+ +++....+ ...++..+++++|
T Consensus 83 ~G~~~~l~~l--~----~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~-~~~~~~~~---------~~~~~~~~l~l~n 146 (334)
T d2f8ja1 83 NGADEIIYVM--M----LMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPL-TKDLRIPE---------VNVGEGDVVFIPN 146 (334)
T ss_dssp EHHHHHHHHH--H----HHSSEEEECSSCCHHHHHHHHHHTCCEEECCC-CTTSCCCC---------CCCCTTEEEEEES
T ss_pred CcchhHHHHH--h----hhccccccccccccccccchhccCCccccccc-cccccccc---------cccccceEEEecc
Confidence 9999998877 3 35799999999999999999999999999998 44322111 1123345888999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 198 GHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 198 p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
||||||.+++.+++.++ .++++++|+||+|.++.+... . ......+++|+++||||+|+++|||+||++.
T Consensus 147 P~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~~--~----~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~ 216 (334)
T d2f8ja1 147 PNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGESY--V----DFLKKYENLAVIRTFSKAFSLAAQRVGYVVA 216 (334)
T ss_dssp SCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCCC--G----GGGGTCSSEEEEEESTTTSSCTTTCEEEEEE
T ss_pred cccccceeecHHHhhcc----ccceeEEeecccchhhccccc--c----cccccCceEEEEecCccccchhhhhhhhccc
Confidence 99999999998877553 468999999999988766421 1 1223457999999999999999999999997
Q ss_pred Ec
Q 023599 278 VR 279 (280)
Q Consensus 278 ~~ 279 (280)
+.
T Consensus 217 ~~ 218 (334)
T d2f8ja1 217 SE 218 (334)
T ss_dssp CH
T ss_pred ch
Confidence 53
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.2e-31 Score=236.50 Aligned_cols=200 Identities=20% Similarity=0.190 Sum_probs=159.2
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
...|.|+.++ ++...+.. +. .....+| |..+..+||+++|+++. +++++|++ |+|++
T Consensus 27 ~~~i~L~~ne----~p~~~~~~--------~~--~~~l~rY-Pd~~~~~Lr~~ia~~~g------v~pe~I~i--t~Gs~ 83 (354)
T d1fg7a_ 27 NGDVWLNANE----YPTAVEFQ--------LT--QQTLNRY-PECQPKAVIENYAQYAG------VKPEQVLV--SRGAD 83 (354)
T ss_dssp TCSEECSSCC----CSSCCCCC--------CC--CCCTTSC-CCSSCHHHHHHHHHHHT------SCGGGEEE--ESHHH
T ss_pred CCCEEeeCCC----CCCCCCHH--------HH--HHHHhcC-CCCcHHHHHHHHHHHhC------CChHHeee--ccCch
Confidence 4678898877 32222221 11 2223445 66678899999999972 45799999 99999
Q ss_pred hHHHHHHHHHHhhcCCC-EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCC
Q 023599 122 GSLRIGADFLAKHYYQH-TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHN 200 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd-~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~N 200 (280)
+++.++ +.+++.||| +|+++.|+|..|...++..|.+++.++. .+++.+|++.++..+. +..+++++||||
T Consensus 84 eai~~~--~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~--~~~~~~d~~~l~~~~~----~~~~v~~~~pnN 155 (354)
T d1fg7a_ 84 EGIELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKLD----GVKVVYVCSPNN 155 (354)
T ss_dssp HHHHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSCT----TEEEEEEESSCT
T ss_pred HHHHHH--HHHhhccccccccccccccccchhhhhccCceeecccc--ccccccchhhhhhccc----ccceeeccCCCc
Confidence 999999 888899998 6889999999999999999999999987 4578899999887652 345899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 201 PTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 201 PTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
|||.+++.++++.+.+.++ ++.++|+||+|.+|.++... ........++++++||||.||+||+|+||++..
T Consensus 156 PtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~-----~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~ 227 (354)
T d1fg7a_ 156 PTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASL-----AGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN 227 (354)
T ss_dssp TTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCS-----GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC
T ss_pred cceeEeeeccccccccccc-ccccccccccchhhcccccc-----chhhcccccceEEeCCccccCCCcccccccccc
Confidence 9999999999999888776 67788888889888765321 223345679999999999999999999999875
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.93 E-value=2.5e-27 Score=212.68 Aligned_cols=197 Identities=14% Similarity=0.029 Sum_probs=139.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHH-HHHHHhccCC-CCCCCCCCCC----CHHHHHHHHHHHhCCCCccccCCCeEEe
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQ-AEQLLVNDLS-ADKEYLPITG----LPEFNKLSAKLIFGADSPAIKENRVSTV 115 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~y~~~~G----~~~lr~~ia~~l~~~~~~~~~~~~i~~v 115 (280)
+-++|++.|+| .+..+-+.+ +.....--.+ ..++|....+ .++|+++|+++....+.......+|++
T Consensus 56 ~~~~~~~~gdp------~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~Ivv- 128 (425)
T d2hoxa1 56 GCSADVASGDG------LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVF- 128 (425)
T ss_dssp TCCEECCSCCC------GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEE-
T ss_pred CceeeCCCCCC------CCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEE-
Confidence 45789999996 234443332 2222110012 2344544332 279999999986444443333455777
Q ss_pred ecccchhHHHHHHHHHHh--------hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 116 QCLSGSGSLRIGADFLAK--------HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 116 ~t~g~~~al~~~~~~~~~--------~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
++|++++|+++ +.++ +.|||+|+++.|+|+.|....+.+|.+...+.. |.+.+++++.++
T Consensus 129 -G~Gsteli~~~--~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~--------D~~~~~~~~~~~- 196 (425)
T d2hoxa1 129 -GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG--------NAANYVNVSNPE- 196 (425)
T ss_dssp -ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE--------EGGGGTTCSCGG-
T ss_pred -CCCHHHHHHHH--HHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccCC--------CHHHHHhhCCCC-
Confidence 99999999999 7776 578999999999999999999988877666554 555565555443
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL 267 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 267 (280)
..+++++|||||||.+.. +..+++.+|.||+|.+..+.+ +....+++|+++||||+||+
T Consensus 197 --~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~---------~~~~~~~~Ivl~S~SK~fgl 255 (425)
T d2hoxa1 197 --QYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP---------IKYKADEDILLFTMSKFTGH 255 (425)
T ss_dssp --GEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSC---------CCSCBCCSEEEEEHHHHTSC
T ss_pred --ceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccc---------hhhhcCCeEEEEeCHHhccC
Confidence 449999999999998632 334789999999997655531 12344689999999999999
Q ss_pred cccccceEEEE
Q 023599 268 YGERVGALSVV 278 (280)
Q Consensus 268 ~G~RvG~~v~~ 278 (280)
+|||+||+++.
T Consensus 256 aGlRiGw~i~~ 266 (425)
T d2hoxa1 256 SGSRFGWALIK 266 (425)
T ss_dssp GGGCCEEEEEC
T ss_pred cchheeeEEeC
Confidence 99999998875
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.88 E-value=2.3e-22 Score=176.36 Aligned_cols=165 Identities=12% Similarity=0.061 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeec
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYD 168 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~ 168 (280)
..+++.+|+++. .+++++ |+||++|+.++ +.+++++||+|+++.++|......++..|++++.+|..+
T Consensus 50 ~~~~~~~A~~~g--------~e~~~~--t~g~t~a~~~~--~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~ 117 (364)
T d2e7ja1 50 DFIHNQLPKFLG--------CDVARV--TNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD 117 (364)
T ss_dssp HHHHTHHHHHTT--------SSEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHHHHHhC--------cCEEEE--ECcHHHHHHHH--HHHHhCCCcEEEeecccccccchHHHhccceEEEeeecc
Confidence 557888999863 266777 99999999999 888899999999999999877777889999999999854
Q ss_pred CCCCCcCHHHHHHHHhcCCC--CcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 169 PKTNGLDFQGMLQDLGAAPS--GAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 169 ~~~~~~d~~~l~~~~~~~~~--~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
..++.+|++.+++++.+.++ +..++++++|+||||.+.+ +++|+++|++||+++++|++|.....+. + ..
T Consensus 118 ~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~~--~---~~ 189 (364)
T d2e7ja1 118 YPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMPV--S---LK 189 (364)
T ss_dssp TTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBCC--C---HH
T ss_pred ccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhhh--c---cc
Confidence 45688999999999976542 3568888999999999887 5678999999999999999997554431 1 12
Q ss_pred HhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+ +.. ++++|++|.++.+| ++||+++.
T Consensus 190 ~~---g~D-~~~~S~~K~~~~~g-~~g~l~~~ 216 (364)
T d2e7ja1 190 EI---GAD-FIVGSGHKSMAASG-PIGVMGMK 216 (364)
T ss_dssp HH---TCS-EEEEEHHHHSSCCS-SCEEEEEC
T ss_pred cc---ccc-eeeeccccccCCCC-CEEEEEEC
Confidence 22 222 67889999999666 89998864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.82 E-value=1.1e-20 Score=166.42 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=125.5
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEE-Ee-CCCCCChHHHHHHcCC
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVY-LS-QPTYGNHPNFFAAAGL 159 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vl-i~-~P~y~~~~~~~~~~G~ 159 (280)
+.+..+.+++++..++++.+.. .+++++ |+|+++|+..+ +.++ .+|+.|+ ++ .|+|..+...++..|+
T Consensus 46 ~~~~~~~~~l~~~~~~~~~~~~-----~e~~~~--~~~~~~a~~~~--l~al-~~~~~vi~~~~~~~~~~~~~~~~l~g~ 115 (366)
T d2aeua1 46 IGSSYFAEKVNEYGLKHLGGDE-----NDKCVG--FNRTSSAILAT--ILAL-KPKKVIHYLPELPGHPSIERSCKIVNA 115 (366)
T ss_dssp THHHHHHHHHHHHHHHHHTCCT-----TEEEEE--ESSHHHHHHHH--HHHH-CCSEEEEECSSSSCCTHHHHHHHHTTC
T ss_pred cCchhhHHHHHHHHHHHccCCC-----ccEEEE--eCCHHHHHHHH--HHHh-CCCCEEEEecCCCcchhHHHHHHhcCC
Confidence 3344567889999888876543 266776 99999999988 7774 5666554 44 5899999999999998
Q ss_pred eeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC
Q 023599 160 AMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD 239 (280)
Q Consensus 160 ~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~ 239 (280)
++ ++. -|+++++++++++++ ++++++|+||++ ++.+++++|+++|++||+++|+||+|....++..
T Consensus 116 ~~--v~~-------~d~e~l~~~i~~~tk---~i~~~~p~n~~~--~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~ 181 (366)
T d2aeua1 116 KY--FES-------DKVGEILNKIDKDTL---VIITGSTMDLKV--IELENFKKVINTAKNKEAIVFVDDASGARVRLLF 181 (366)
T ss_dssp EE--EEE-------SCHHHHHTTCCTTEE---EEEECBCTTSCB--CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT
T ss_pred eE--ECC-------CCHHHHHHhcCCCce---EEEEEecCCCCc--CCHHHHHHHHHHhccCcEEEEEecCccccccccc
Confidence 64 444 278999998877654 889999999864 7889999999999999999999999988776322
Q ss_pred CChhHHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 240 ADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
... ... ..+ .-+++.|+||.+ +|||+||++...
T Consensus 182 ~~~-~~~---~~~-~di~~~S~sK~~--~g~~~G~i~~~~ 214 (366)
T d2aeua1 182 NQP-PAL---KLG-ADLVVTSTDKLM--EGPRGGLLAGKK 214 (366)
T ss_dssp TCC-CHH---HHT-CSEEEEETTSSS--SSCSCEEEEEEH
T ss_pred cCC-CHh---hcC-ceEEEecccccc--cccceeEEEecH
Confidence 111 111 122 237789999965 599999998753
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=4.9e-18 Score=150.34 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=139.5
Q ss_pred eecCCCCccchHHHHHHHHHHhccCCCCCCCC-CCCC-----------CHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 52 YRTEEGKPLLLNAVRQAEQLLVNDLSADKEYL-PITG-----------LPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~G-----------~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
|+|..+..++++.+.+++.+.... . ..|+ |..+ ++++|+.+|+++.. ++++|++ |+|
T Consensus 5 YlD~aa~~p~~~~v~ea~~~~~~~-~--~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~------~~~~I~~--~~~ 73 (391)
T d1p3wa_ 5 YLDYSATTPVDPRVAEKMMQFMTM-D--GTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA------DPREIVF--TSG 73 (391)
T ss_dssp ECBTTTCCCCCHHHHHHHHTTTST-T--SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTC------CGGGEEE--ESS
T ss_pred EeeCccccCCCHHHHHHHHHHHHh-c--cccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCC------CCCcEEE--ECC
Confidence 345555566777776766665421 1 1222 2211 34678889998743 3588988 999
Q ss_pred chhHHHHHHHHHHh----hcCCCEEEEeCCCCCChHHHHH---HcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEE
Q 023599 120 GSGSLRIGADFLAK----HYYQHTVYLSQPTYGNHPNFFA---AAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIV 192 (280)
Q Consensus 120 ~~~al~~~~~~~~~----~~~Gd~Vli~~P~y~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 192 (280)
+++++..+ +.++ +.+||+|++.++.|+.+...++ ..|+++..++. + +++.+|++.+++++.++++ +
T Consensus 74 ~t~~l~~~--~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~-~-~~~~~d~~~~~~~i~~~T~---l 146 (391)
T d1p3wa_ 74 ATESDNLA--IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP-Q-RNGIIDLKELEAAMRDDTI---L 146 (391)
T ss_dssp HHHHHHHH--HHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECC-C-TTSCCCHHHHHHHCCTTEE---E
T ss_pred HHHHHHHH--HhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCC-C-CCCeEcHHHHHHhCCCCcE---E
Confidence 99999988 4432 4799999999999987765554 46999999998 3 4457899999999987654 9
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccccccccccc
Q 023599 193 LLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERV 272 (280)
Q Consensus 193 v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Rv 272 (280)
|++++++||||.+++. ++|+++|+++|+++++|.++.....+.+ +...+.. +++.|..|.+|.+| +
T Consensus 147 v~is~~~n~tG~~~~~---~~I~~~~~~~~~~~ivD~~~~~g~~~~d--------~~~~~~D-~~~~s~~k~~g~~g--~ 212 (391)
T d1p3wa_ 147 VSIMHVNNEIGVVQDI---AAIGEMCRARGIIYHVDATQSVGKLPID--------LSQLKVD-LMSFSGHKIYGPKG--I 212 (391)
T ss_dssp EECCSBCTTTCCBCCH---HHHHHHHHHHTCEEEEECTTTBTTBCCC--------TTTSCCS-EEEEESTTTTSCSS--C
T ss_pred EEEECCCCCCeeECCH---HHHHHHhccCCcEEEEeeccccCCcccc--------chhcccc-ccccccccccCCCc--e
Confidence 9999999999999985 4678899999999999999876554321 1112223 45678899987665 4
Q ss_pred ceEEEE
Q 023599 273 GALSVV 278 (280)
Q Consensus 273 G~~v~~ 278 (280)
|++.+.
T Consensus 213 g~~~~~ 218 (391)
T d1p3wa_ 213 GALYVR 218 (391)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666553
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.61 E-value=1.1e-15 Score=134.25 Aligned_cols=163 Identities=13% Similarity=0.020 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHH----HHHHcCCeee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPN----FFAAAGLAMK 162 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~----~~~~~G~~~~ 162 (280)
..++|+.+|+++.. ++++|++ |+|++++++++ +.++ ..+||+|+++++.|+.... ..+..|+++.
T Consensus 52 ~~~~r~~la~~~~~------~~~~i~~--~~g~t~a~~~~--~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~ 121 (381)
T d1elua_ 52 IAQLRQALAETFNV------DPNTITI--TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYR 121 (381)
T ss_dssp HHHHHHHHHHHTTS------CGGGEEE--ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHhCC------CcccEEE--ECChHHHhhhc--chhhhhcCCceEEEeccccceeeecccccccccccccc
Confidence 34578888888642 3478888 99999999999 7775 5699999999999975443 4445799999
Q ss_pred EEEeecCCCCCcC-HHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh----CCceeEEcccCCCcccC
Q 023599 163 TYHYYDPKTNGLD-FQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL----KRLLPFFDCAYQGFVMN 237 (280)
Q Consensus 163 ~v~~~~~~~~~~d-~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~----~~~~ii~De~y~~~~~~ 237 (280)
.+|. +......+ .+.+++.+.+ +..++++++++||||.+++.+++ .++|++ +++++++|.++......
T Consensus 122 ~v~~-~~~~~~~~~~~~l~~~i~~---~t~~v~i~~~~n~tG~~~~~~~I---~~l~~~~~~~~~~~~~vD~~~~~g~~~ 194 (381)
T d1elua_ 122 FFPV-AATLNQGDAAAVLANHLGP---KTRLVILSHLLWNTGQVLPLAEI---MAVCRRHQGNYPVRVLVDGAQSAGSLP 194 (381)
T ss_dssp EECC-GGGSSSSCHHHHHHTTCCT---TEEEEEEESBCTTTCCBCCHHHH---HHHHHHCCSSSCCEEEEECTTTBTTBC
T ss_pred cccc-ccccccchHHHHHHhhhcc---cccccccccccccccccchhhHH---HHHHhhccccccccccccccccccccc
Confidence 9987 33222222 4445554443 34599999999999999997655 556665 46899999988654432
Q ss_pred cCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 238 MDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
. .+.+.+ --+++.|+.|.++ ...++|++.+
T Consensus 195 ~--------~~~~~~-~D~~~~s~~K~~~-~p~G~g~l~~ 224 (381)
T d1elua_ 195 L--------DFSRLE-VDYYAFTGHKWFA-GPAGVGGLYI 224 (381)
T ss_dssp C--------CTTTSC-CSEEEEESSSTTC-CCTTCEEEEE
T ss_pred c--------cccccc-ccccccccccccc-ccchhhHHHh
Confidence 1 111112 2366889999987 3456777665
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.59 E-value=5.6e-15 Score=129.49 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~~ 163 (280)
...|.+.+++.-.+ +..++ +++|++|+..+ +++++++||+|++++..|++....++ ..|+++.+
T Consensus 61 ~~~LE~~la~LEg~--------~~a~~--~~SGmaAi~~~--l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~ 128 (392)
T d1gc0a_ 61 LNLLEARMASLEGG--------EAGLA--LASGMGAITST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH 128 (392)
T ss_dssp HHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred HHHHHHHHHHHhCC--------cceee--hhhHHHHHHHH--HHhhccCCCeeecccccchhhhhhhhhhhccCCccccc
Confidence 45688888887422 34445 99999999999 89999999999999999999877766 45888887
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++. .|.+.++++++++++ +|++.+|.|||..+.+ +++|+++|+++|+++++|+.|..-...
T Consensus 129 ~d~-------~d~~~~~~ai~~~t~---lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~------ 189 (392)
T d1gc0a_ 129 VDM-------ADLQALEAAMTPATR---VIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ------ 189 (392)
T ss_dssp ECT-------TCHHHHHHHCCTTEE---EEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC------
T ss_pred CCc-------cCHHHHHHhCCCCCe---EEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc------
Confidence 765 478999999987655 9999999999987775 677799999999999999999644331
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ ..+.+.+ |++.|.||.++-.|--+|-+++.
T Consensus 190 --~-Pl~~GaD-ivihS~TKyi~Ghsd~~~G~v~~ 220 (392)
T d1gc0a_ 190 --R-PLELGAD-LVVHSATKYLSGHGDITAGIVVG 220 (392)
T ss_dssp --C-GGGGTCS-EEEEETTTTTTCSSSCCCEEEEE
T ss_pred --C-hHHhCCC-EEEEecceeecCCcccccccccc
Confidence 1 1233444 66999999997677666666654
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.59 E-value=5.9e-15 Score=129.47 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~~~ 163 (280)
...|.+.+++.-.+ +..++ +++|++|+..+ +++++.+||+|++++..|.+....+ ...|+++.+
T Consensus 65 ~~~LE~~la~LEgg--------~~a~~--~sSGmaAi~~~--l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~ 132 (397)
T d1y4ia1 65 TDALEKKLAVLERG--------EAGLA--TASGISAITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRF 132 (397)
T ss_dssp HHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC--------cccee--ehHHHHHHHHH--HhhccCCCCeeeeecccccccchhhhcccCCCceEeec
Confidence 34577777776322 33344 99999999999 8899999999999999998776655 467998888
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++. .|.+.++++++++++ +|++.+|.|||..+.+ +++|+++|+++|+++++|+.|..-.... +
T Consensus 133 vd~-------~d~~~~~~~i~~~Tk---lv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~~--P-- 195 (397)
T d1y4ia1 133 VDA-------GKPEEIRAAMRPETK---VVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ--P-- 195 (397)
T ss_dssp ECT-------TSHHHHHHHCCTTEE---EEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--G--
T ss_pred cCC-------CCHHHHHHhcCCCCc---EEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccCc--c--
Confidence 875 378999999976655 9999999999977665 6778999999999999999997644421 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEEc
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVVR 279 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~~ 279 (280)
.+.+.. |++.|+||.++-.|--+|-+++..
T Consensus 196 -----l~~GaD-ivihS~TKyi~Ghsdvl~G~v~~~ 225 (397)
T d1y4ia1 196 -----LQLGAD-IVVHSVTKYINGHGDVIGGIIVGK 225 (397)
T ss_dssp -----GGGTCS-EEEEETTTTTTCSSCCCCEEEEEC
T ss_pred -----hhcCCC-EEEEehhhhcCCCcceeeeccCCC
Confidence 133333 679999999988888888877754
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=5.9e-14 Score=122.95 Aligned_cols=164 Identities=10% Similarity=0.008 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHH--HhhcCCCEEEEeCCCCCChHHHH---HHcCCeeeE
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL--AKHYYQHTVYLSQPTYGNHPNFF---AAAGLAMKT 163 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~--~~~~~Gd~Vli~~P~y~~~~~~~---~~~G~~~~~ 163 (280)
++.|+.+++++.- .+++|++ ++|+++++..+.... ....+|+.|++....|..+...+ +..|++++.
T Consensus 47 ~~aR~~ia~l~~~------~~~~i~~--~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~ 118 (376)
T d1eg5a_ 47 EKAREKVAKVLGV------SPSEIFF--TSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKY 118 (376)
T ss_dssp HHHHHHHHHHHTS------CGGGEEE--ESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCC------CCCcEEE--ECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEE
Confidence 3568888988743 3588988 999999999884322 23467889999988887665544 456999999
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
+|+ + +++.+|++.+++++.++++ ++++++++|+||..++.+++.++++ ++..++++++|.++.--..+.+
T Consensus 119 vp~-~-~~~~id~~~l~~~i~~~t~---lv~is~v~~~tG~~~~~~~i~~~~~-~~~~~~~~~vD~~q~~g~~~~d---- 188 (376)
T d1eg5a_ 119 VPV-D-SRGVVKLEELEKLVDEDTF---LVSIMAANNEVGTIQPVEDVTRIVK-KKNKETLVHVDAVQTIGKIPFS---- 188 (376)
T ss_dssp CCB-C-TTSCBCHHHHHHHCCTTEE---EEEEESBCTTTCBBCCHHHHHHHHH-HHCTTCEEEEECTTTTTTSCCC----
T ss_pred EcC-C-CCCeECHHHHHHhcCCCce---EEEEECCccccceeeeehhhhhhhh-hcccCceeEEEeeecccccccc----
Confidence 998 3 4568999999999976654 9999999999999999887766554 3446899999988765544311
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGAL 275 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~ 275 (280)
+.+. .--+++.|..|.+|.+|.+++|+
T Consensus 189 ----~~~~-~~D~~~~s~~K~~gp~G~~~l~~ 215 (376)
T d1eg5a_ 189 ----LEKL-EVDYASFSAHKFHGPKGVGITYI 215 (376)
T ss_dssp ----CTTT-CCSEEEEEGGGGTSCTTCEEEEE
T ss_pred ----cccc-CccceecccceeecCCCceeEEe
Confidence 1111 22368999999999888887775
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=1.2e-13 Score=120.75 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH----cCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA----AGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~----~G~~~~~ 163 (280)
...|.+.+++.-.+ +..++ +++|+.|+. + +++++.+||+|++..+.|++....++. .|+++.+
T Consensus 51 ~~~le~~la~LE~~--------~~a~~--fsSGMaAis-a--ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~ 117 (380)
T d1ibja_ 51 RDALESLLAKLDKA--------DRAFC--FTSGMAALS-A--VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKR 117 (380)
T ss_dssp HHHHHHHHHHHHTC--------SEEEE--ESSHHHHHH-H--HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEE
T ss_pred HHHHHHHHHHHcCC--------ceEEe--hhhHHHHHH-H--HHHhhCCCCEEEEEecccccccchhhhhhccccccccc
Confidence 34677777776321 34445 899999986 4 567889999999999999988777763 5777776
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChh
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
++. .+.+.+++++.++++ +|++.+|.|||..+.+ +++|+++|+++|+++|+|+.+..-.... +
T Consensus 118 ~d~-------~~~~~~~~ai~~~t~---li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~~--P-- 180 (380)
T d1ibja_ 118 VNT-------TKLDEVAAAIGPQTK---LVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSR--P-- 180 (380)
T ss_dssp ECT-------TSHHHHHHHCCSSEE---EEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCC--G--
T ss_pred cCc-------chHHHHHHHhccCcc---EEEecccccccccccc---HHHHHHHHHHcCCeEEeecccccccccc--c--
Confidence 654 378899998876654 9999999999988876 5677889999999999999997644421 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+.. |++.|+||.++-.|--+|=+++.
T Consensus 181 -----l~~GaD-iVvhS~TKyi~GhsDv~~G~v~~ 209 (380)
T d1ibja_ 181 -----LELGAD-IVMHSATKFIAGHSDVMAGVLAV 209 (380)
T ss_dssp -----GGTTCS-EEEEETTTTTTCSSCCCCEEEEE
T ss_pred -----cccCCC-EEEecccceeccccCcccccccc
Confidence 123333 66999999998777766655443
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2e-13 Score=119.26 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=118.6
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~ 162 (280)
....|.+.+++.-.+ +..++ +++|+.|+..+ +++++.+||.|++++..|.+....+. ..|..+.
T Consensus 51 t~~~le~~la~LEgg--------~~a~~--~sSGMaAi~~~--l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~ 118 (384)
T d1cs1a_ 51 TRDVVQRALAELEGG--------AGAVL--TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL 118 (384)
T ss_dssp HHHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHHHHHhCC--------CceEE--ecChHHHHHHH--Hhhcccccceecccccccchhhhhhhhhhcccccccc
Confidence 345677888877321 34445 99999999999 88999999999999999987755554 3465665
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc-CcCCC
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDAD 241 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~ 241 (280)
+++. .|.+.+++++.++++ +|++.+|.|||..+.+ +++|+++|+++|+++|+|+.|..-.. ++
T Consensus 119 ~~d~-------~d~~~~~~~~~~~t~---~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~P--- 182 (384)
T d1cs1a_ 119 FVDQ-------GDEQALRAALAEKPK---LVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQNP--- 182 (384)
T ss_dssp EECT-------TCHHHHHHHHHTCCS---EEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCG---
T ss_pred cccC-------CCHHHHHhhcccccc---EEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccccc---
Confidence 5543 478999999998877 9999999999987775 66778899999999999999954433 31
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+.. |++.|.||.++-.|--+|=+++.
T Consensus 183 -------l~~GaD-iVvhS~TKyi~Ghsdv~~G~vv~ 211 (384)
T d1cs1a_ 183 -------LALGAD-LVLHSCTKYLNGHSDVVAGVVIA 211 (384)
T ss_dssp -------GGGTCS-EEEEETTTTTTCSSCCCCEEEEE
T ss_pred -------cccCCC-EEEEccccccccCCCcccccccC
Confidence 123333 66999999998777666665554
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=1.5e-13 Score=121.20 Aligned_cols=156 Identities=20% Similarity=0.177 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeeeE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMKT 163 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~~ 163 (280)
...|.+.+++.-.+ +..++ +++|+.|+..+ +++++.+||+|++++..|++....++ ..|+++.+
T Consensus 60 ~~~LE~~la~LE~~--------~~a~~--~~SGmaAi~~~--~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~ 127 (421)
T d2ctza1 60 VDVLEKRLAALEGG--------KAALA--TASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRF 127 (421)
T ss_dssp HHHHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCC--------CeEEE--ecChHHHHHHH--HHhhcccccceeecCCcCCchhHHHHHHHhhcccccee
Confidence 34577777776321 33445 99999999999 89999999999999999988766655 67888877
Q ss_pred EEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC--CcccCcCCC
Q 023599 164 YHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ--GFVMNMDAD 241 (280)
Q Consensus 164 v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~--~~~~~~~~~ 241 (280)
++. . -..+..++.++++++ +|++.+|.|||..+.+ +++|+++|+++|+++|+|+.+. ++...+
T Consensus 128 ~d~--~----~~~~~~~~~~~~~t~---li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~P--- 192 (421)
T d2ctza1 128 TSR--E----ERPEEFLALTDEKTR---AWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP--- 192 (421)
T ss_dssp CCT--T----CCHHHHHHHCCTTEE---EEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG---
T ss_pred ccc--c----cCcchhccccCCCce---EEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceeccc---
Confidence 764 1 134555565655544 9999999999987765 6777999999999999999996 333321
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+.+ |++.|.||.++-.|--+|=+++.
T Consensus 193 -------l~~GaD-iVvhS~TKyl~GHsD~l~G~vv~ 221 (421)
T d2ctza1 193 -------LAWGAA-LVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp -------GGGTCS-EEEEETTTTTTCSSCCCCEEEEE
T ss_pred -------cccCCc-EEEEechhhccCCCCeEEEEEEc
Confidence 133333 66999999998888888877764
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.50 E-value=1e-13 Score=121.24 Aligned_cols=150 Identities=11% Similarity=0.006 Sum_probs=115.1
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCC
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQH 138 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd 138 (280)
...+.+..+.+.+. .+ .|.......+|++.+++++.. ++.++ +++|+.|+.++ +.++ +.+||
T Consensus 10 ~~~~~~~~~~~~~~--~~---~~~~G~~v~~~E~~la~~~g~--------~~ai~--~~sgt~Al~~a--l~al~~~~gd 72 (376)
T d1mdoa_ 10 MGAEELAAVKTVLD--SG---WITTGPKNQELEAAFCRLTGN--------QYAVA--VSSATAGMHIA--LMALGIGEGD 72 (376)
T ss_dssp CCHHHHHHHHHHHH--HT---CCSSSHHHHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTC
T ss_pred CCHHHHHHHHHHHh--cC---CCcCCHHHHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHH--HHHhCCCCCC
Confidence 34455554444444 22 233333478999999999743 34455 88889999999 7776 67999
Q ss_pred EEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH
Q 023599 139 TVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLM 218 (280)
Q Consensus 139 ~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~ 218 (280)
+|+++..+|......+...|++++.++. +++++.+|++.+++++.++++ +|++. +..|...+ +.+|.++|
T Consensus 73 eVi~~~~~~~~~~~ai~~~g~~pv~~d~-~~~~~~~d~~~l~~~i~~~tk---aIi~~---h~~G~~~~---~~~i~~i~ 142 (376)
T d1mdoa_ 73 EVITPSMTWVSTLNMIVLLGANPVMVDV-DRDTLMVTPEHIEAAITPQTK---AIIPV---HYAGAPAD---LDAIYALG 142 (376)
T ss_dssp EEEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCCTTEE---EECCB---CGGGCCCC---HHHHHHHH
T ss_pred EEEEecccccccccchhccccceeeecc-cccccCCCHHHHHHhcCCCCe---EEEEe---CCCCCccc---hhHHHHHH
Confidence 9999999999999999999999999999 677889999999999987644 66643 46776554 66778899
Q ss_pred HhCCceeEEcccCCCccc
Q 023599 219 RLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 219 ~~~~~~ii~De~y~~~~~ 236 (280)
+++|++||+|++.+....
T Consensus 143 ~~~~i~vIeD~a~a~g~~ 160 (376)
T d1mdoa_ 143 ERYGIPVIEDAAHATGTS 160 (376)
T ss_dssp HHHTCCBCEECTTCTTCE
T ss_pred HhcCceEEeccchhccCe
Confidence 999999999999866543
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.3e-12 Score=113.19 Aligned_cols=201 Identities=12% Similarity=0.017 Sum_probs=142.5
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccC----CCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEee
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDL----SADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQ 116 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~ 116 (280)
+...+||+..+| -|+..-+...+++.+.+.+-. ..-.-++...-..+|.+.+|+|+.. +..++
T Consensus 37 g~~~l~f~s~dY---LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~--------e~al~-- 103 (383)
T d1bs0a_ 37 DRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGY--------SRALL-- 103 (383)
T ss_dssp TEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--------SEEEE--
T ss_pred CeEEEEEEcccc---cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCC--------CceEE--
Confidence 457889988776 444444445555555544200 0001122222347899999998632 55566
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEec
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQA 196 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~ 196 (280)
+++|..|...+ +.++..++|.|++..-.+......++..+.+++.++- .|.+.+++.+.+.+....+++..
T Consensus 104 ~~SG~~an~~~--i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~e 174 (383)
T d1bs0a_ 104 FISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTE 174 (383)
T ss_dssp ESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEE
T ss_pred ecccchhhHHH--HHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEec
Confidence 88889999888 7888999999999999888888878878888777664 48999999998776667799999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccc
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 269 (280)
...+.+|.+.+.++ |+++|++||+++++||++.......... ........ ...+.+.++||.+|.+|
T Consensus 175 ~v~s~~G~i~pl~~---l~~l~~~~~~~livDeah~~gv~G~~g~--G~~~~~~~-~~~~~~~t~~ka~g~~G 241 (383)
T d1bs0a_ 175 GVFSMDGDSAPLAE---IQQVTQQHNGWLMVDDAHGTGVIGEQGR--GSCWLQKV-KPELLVVTFGKGFGVSG 241 (383)
T ss_dssp SBCTTTCCBCCHHH---HHHHHHHTTCEEEEECTTTTTTSSGGGC--CHHHHTTC-CCSEEEEESSSTTSSCC
T ss_pred CCCCCCCcccchhH---HHHHHHhcCcEEEeecceeeeecCCccc--chHHHcCC-ccccccccccccccccc
Confidence 99999999998654 5778899999999999999888753211 11222222 24456789999998653
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=9.5e-13 Score=116.54 Aligned_cols=165 Identities=14% Similarity=0.114 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHH--HhhcCCCEEEEeCCCCCChHHH----HHHcCCee
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL--AKHYYQHTVYLSQPTYGNHPNF----FAAAGLAM 161 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~--~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~~ 161 (280)
+++.|+.+++++.... ++++++ +.|+++++..+++.. ....+||+|++.+-.|+..... .+..|+++
T Consensus 68 ~e~~R~~ia~~l~~~~-----~~~i~~--~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v 140 (405)
T d1jf9a_ 68 MENVRKRASLFINARS-----AEELVF--VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAEL 140 (405)
T ss_dssp HHHHHHHHHHHTTCSC-----GGGEEE--ESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHcCCCC-----cccccc--cCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEE
Confidence 4567888888875332 377887 999999999873322 2356899999999999775444 45679999
Q ss_pred eEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 162 KTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 162 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.+|. ++ +..+|.+.+++++.++++ +++++..+|.||..++.+ +|+++|+++|+++++|.+...-..+. +
T Consensus 141 ~~~~~-~~-~g~~~~~~~~~~i~~~t~---lv~~~~v~~~tG~~~pi~---~i~~~~~~~g~~~~vD~~q~~g~~~i--d 210 (405)
T d1jf9a_ 141 RVIPL-NP-DGTLQLETLPTLFDEKTR---LLAITHVSNVLGTENPLA---EMITLAHQHGAKVLVDGAQAVMHHPV--D 210 (405)
T ss_dssp EEECB-CT-TSCBCGGGHHHHCCTTEE---EEEEESBCTTTCCBCCHH---HHHHHHHHTTCEEEEECTTTTTTSCC--C
T ss_pred EEECC-CC-CCcCCHHHHHHhccCCcE---EEEEecCCCcccccCchH---HhhhHHHHcCCeeecccceecccccc--c
Confidence 99998 33 457899999998876654 999999999999999855 56888999999999999886654431 1
Q ss_pred hhHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
. .. .+.. +++.|.-|.+|.+| +|++.+.
T Consensus 211 ~---~~---~~~D-~~~~s~hK~~Gp~G--~g~l~v~ 238 (405)
T d1jf9a_ 211 V---QA---LDCD-FYVFSGHKLYGPTG--IGILYVK 238 (405)
T ss_dssp H---HH---HTCS-EEEEEGGGTTSCSS--CEEEEEC
T ss_pred h---hh---cCCc-eeeccccccccCCC--ceeeeec
Confidence 1 21 2222 66999999987665 6766653
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.45 E-value=3.3e-13 Score=118.33 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeee
Q 023599 87 GLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMK 162 (280)
Q Consensus 87 G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~ 162 (280)
....|.+.+++.-.+ +..++ +++|+.|+..+ +++++.+||+|++++..|++....+. ..|+++.
T Consensus 68 t~~~LE~~la~LEgg--------~~a~~--~sSGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~ 135 (398)
T d1qgna_ 68 TTVVLEEKISALEGA--------ESTLL--MASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITAT 135 (398)
T ss_dssp HHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred HHHHHHHHHHHHhCC--------ceEEE--ecCcchHHHHH--Hhhcccccccccccccccchhhhhhcccccccccccc
Confidence 344688888887321 44455 99999999999 88999999999999999988776665 4677777
Q ss_pred EEEeecCCCCCcCHHHHHH-HHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc-CcCC
Q 023599 163 TYHYYDPKTNGLDFQGMLQ-DLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM-NMDA 240 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~-~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~-~~~~ 240 (280)
.++. .+.+..++ ...+++ .+|++.+|.|||..+.+ +++|+++|+++|+++|+|+.+..-.. ++
T Consensus 136 ~~~~-------~~~~~~~~~~~~~~t---~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~P-- 200 (398)
T d1qgna_ 136 VIDP-------ADVGALELALNQKKV---NLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQKA-- 200 (398)
T ss_dssp EECS-------SCHHHHHHHHHHSCE---EEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCT--
T ss_pred cccc-------cchhhhhhhhccccc---eEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCCc--
Confidence 6653 24444444 344444 48999999999977765 67889999999999999999965443 21
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
.+.+.. |++.|.||.++-.|--+|-+++
T Consensus 201 --------l~~GaD-iVihS~TKy~~Ghsdv~~G~v~ 228 (398)
T d1qgna_ 201 --------LALGAD-LVLHSATKFLGGHNDVLAGCIS 228 (398)
T ss_dssp --------TTTTCS-EEEECTTTTTTCSSSCCCEEEE
T ss_pred --------hhhCCC-EEEEechhhcCcccceeehhhc
Confidence 133334 5699999999877776665554
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.45 E-value=3.8e-13 Score=115.56 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcCCeeeEEE
Q 023599 90 EFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAGLAMKTYH 165 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~~~~v~ 165 (280)
.|.+.+|+.-.+ +..++ +++|+.|+..+ +++++++||+|++++..|++.... ++..|+++.+++
T Consensus 2 aLE~~la~Leg~--------~~a~~--~sSGMaAi~~~--l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d 69 (331)
T d1pffa_ 2 ALEGKIAKLEHA--------EACAA--TASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHTC--------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCC--------CeEEE--ECCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEec
Confidence 477788887422 34445 99999999998 889999999999999999776555 457898888877
Q ss_pred eecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHH-HHhCCceeEEcccCCCcccCcCCChhH
Q 023599 166 YYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQL-MRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~-~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
. .|.+.++++++++++ ++++.+|.||+..+.+... ++++ ++++++++|+|+.+.....-
T Consensus 70 ~-------~d~~~~~~~i~~~t~---~i~~Es~~np~~~v~d~~~---~~~~~a~~~~~~~vVDnT~atp~~~------- 129 (331)
T d1pffa_ 70 M-------AVPGNIEKHLKPNTR---IVYFETPANPTLKVIDIED---AVKQARKQKDILVIVDNTFASPILT------- 129 (331)
T ss_dssp T-------TSTTHHHHTCCTTEE---EEEEESSCTTTCCCCCHHH---HHHHHTTSSSCEEEEECTTTHHHHC-------
T ss_pred c-------cchhhHhhhcccccc---eeeeecccccccccccchh---hhhhhhcccCceEEeeccccccccc-------
Confidence 5 367888998876654 8999999999988887554 4555 46789999999999754431
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ ..+.+.. |++.|.||.++-.|--+|-+++.
T Consensus 130 -~-pl~~GaD-iVv~S~TKy~~Gh~d~~~G~v~~ 160 (331)
T d1pffa_ 130 -N-PLDLGVD-IVVHSATKYINGHTDVVAGLVCS 160 (331)
T ss_dssp -C-GGGGTCS-EEEEETTTTTSSSSSCCCEEEEE
T ss_pred -c-ccccCCC-EEEecchhhcCCCCccccccccc
Confidence 1 1233333 56999999998777777766654
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=1.1e-13 Score=118.28 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEE
Q 023599 62 LNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVY 141 (280)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vl 141 (280)
.+.+.+|+.+.. .+ ...|++.+...+|++.+|+++ +. +++++ ++||++|+.++ +.++..+||.++
T Consensus 13 ~p~v~~A~~~a~--~g-~~~yg~~p~~~~le~~lA~~~-G~-------~~~~~--~~sGt~A~~~a--l~a~~~~g~~~~ 77 (343)
T d1m6sa_ 13 TEEMRKAMAQAE--VG-DDVYGEDPTINELERLAAETF-GK-------EAALF--VPSGTMGNQVS--IMAHTQRGDEVI 77 (343)
T ss_dssp CHHHHHHHHTCC--CC-CGGGTCCHHHHHHHHHHHHHT-TC-------SEEEE--ESCHHHHHHHH--HHHHCCTTCEEE
T ss_pred CHHHHHHHHhhh--cC-CcccCCCHHHHHHHHHHHHHH-CC-------CeEEE--eCCHHHHHHHH--HHHHhccCCcee
Confidence 345555554422 22 345777778899999999985 22 45666 89999999999 888889999999
Q ss_pred EeCCCCCCh---HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC----CCcEEEEecCCCCCCCCCCCHHHHHHH
Q 023599 142 LSQPTYGNH---PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP----SGAIVLLQASGHNPTGIDPTAQQWEQI 214 (280)
Q Consensus 142 i~~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~~v~~~~p~NPTG~~~~~~~l~~i 214 (280)
+..+.+..+ .......+..+..++. .....|++.+++.+...+ ....+++.+.++|+.|.+.+.+++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 154 (343)
T d1m6sa_ 78 LEADSHIFWYEVGAMAVLSGVMPHPVPG---KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEI 154 (343)
T ss_dssp EETTCHHHHSSTTHHHHHTCCEEEEECE---ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHH
T ss_pred ccccccceeeecccccccccceeecccc---ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHH
Confidence 999877433 2333344555555554 234579999999987652 234577778889999999999999999
Q ss_pred HHHHHhCCceeEEcccCCCccc
Q 023599 215 RQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 215 ~~~~~~~~~~ii~De~y~~~~~ 236 (280)
+++|+++++++++|++|..+..
T Consensus 155 ~~~~~~~g~~~~~D~a~~~~~~ 176 (343)
T d1m6sa_ 155 CTIAKEHGINVHIDGARIFNAS 176 (343)
T ss_dssp HHHHHHHTCEEEEEETTHHHHH
T ss_pred HHHHHhcCeEEEeccccccccc
Confidence 9999999999999999977654
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=5.7e-13 Score=116.79 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHH----HcCCeeeEE
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFA----AAGLAMKTY 164 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~----~~G~~~~~v 164 (280)
..|.+.+++.- +. +..++ +++|+.|+..+ +++++.+||+|+++...|++....++ ..|+++..+
T Consensus 61 ~~le~~la~LE-g~-------~~a~~--~~SGMaAi~~~--l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~ 128 (391)
T d1cl1a_ 61 FSLQQAMCELE-GG-------AGCVL--FPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWF 128 (391)
T ss_dssp HHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred HHHHHHHHHHh-CC-------ccEEE--eccccceeeeh--hhcccCCCCeEEEecccccchhhhhhhcccccccccccc
Confidence 45677777752 21 44455 99999999999 89999999999999999998777765 457777766
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh--CCceeEEcccCCCcccCcCCCh
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL--KRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~--~~~~ii~De~y~~~~~~~~~~~ 242 (280)
+. .|.+.++++++++++ +|++.+|.|||..+.+. ++++++|++ +|+++++|+.+.....-. +
T Consensus 129 d~-------~d~~~~~~~i~~~t~---~i~~EtpsNP~l~v~Di---~~i~~~a~~~~~g~~~vVDnT~atP~~~~--P- 192 (391)
T d1cl1a_ 129 DP-------LIGADIVKHLQPNTK---IVFLESPGSITMEVHDV---PAIVAAVRSVVPDAIIMIDNTWAAGVLFK--A- 192 (391)
T ss_dssp CT-------TCGGGGGGTCCTTEE---EEEEESSCTTTCCCCCH---HHHHHHHHHHCTTCEEEEECTTTTTTSSC--G-
T ss_pred cC-------ccccccccccccccc---eeeecccCccccccccc---HHHHHHHHhccCCcEEEEeccccchhhhc--c-
Confidence 54 367778887766544 99999999999888865 455666654 699999999997755521 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+.. |++.|.||.++-.|--+|=+++.
T Consensus 193 ------l~~GaD-ivvhS~TKy~~GhsdvlgG~vv~ 221 (391)
T d1cl1a_ 193 ------LDFGID-VSIQAATKYLVGHSDAMIGTAVC 221 (391)
T ss_dssp ------GGGTCS-EEEEETTTTTTCSSSCCCEEEEE
T ss_pred ------cccccc-eEEeecchhccccccccccceec
Confidence 133333 66999999998777666655543
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.40 E-value=4.1e-12 Score=111.60 Aligned_cols=183 Identities=11% Similarity=0.003 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEE
Q 023599 62 LNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTV 140 (280)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~V 140 (280)
.+.++.+.+.+. .+... +....-...|.+.+|+++.. .+++. +++|+.|+.++ +.++ +.+||+|
T Consensus 13 ~~~~~~~~~~l~--~g~~~-~~~g~~v~~fE~~~a~~~g~--------~~~v~--~~SGt~Al~la--l~~l~~~~gdeV 77 (384)
T d1b9ha_ 13 DAERNGLVRALE--QGQWW-RMGGDEVNSFEREFAAHHGA--------AHALA--VTNGTHALELA--LQVMGVGPGTEV 77 (384)
T ss_dssp HHHHHHHHHHHH--TSCCB-TTTCSHHHHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEE
T ss_pred HHHHHHHHHHHH--cCCee-ecCCHHHHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHH--HHHcCCCCCCEE
Confidence 344555555454 23111 22223467899999999632 44455 99999999999 6665 5799999
Q ss_pred EEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHh
Q 023599 141 YLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRL 220 (280)
Q Consensus 141 li~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~ 220 (280)
++|..+|......+...|++++.++. +++++.+|++.+++.+.++++ +++ +.+..|... ++.++.++|++
T Consensus 78 i~p~~t~~a~~~ai~~~g~~p~~~d~-~~~~~~~d~~~~~~~i~~~tk---~i~---~~~~~g~~~---d~~~i~~~~~~ 147 (384)
T d1b9ha_ 78 IVPAFTFISSSQAAQRLGAVTVPVDV-DAATYNLDPEAVAAAVTPRTK---VIM---PVHMAGLMA---DMDALAKISAD 147 (384)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCCTTEE---EEC---CBCGGGCCC---CHHHHHHHHHH
T ss_pred EEeccccccccccccccccccccccc-cccccccchhhhccccccccc---ccc---ccccccccc---ccccchhhhhh
Confidence 99999999999999999999999998 677889999999998876543 554 345666544 46777899999
Q ss_pred CCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 221 KRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 221 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+++.+|+|.+.+....-.. +.....++-.++-.+.+|.++ .| .-|.++.
T Consensus 148 ~~i~lieD~a~a~ga~~~g------~~~g~~g~~~~~Sf~~~K~i~-~g-~GG~i~t 196 (384)
T d1b9ha_ 148 TGVPLLQDAAHAHGARWQG------KRVGELDSIATFSFQNGKLMT-AG-EGGAVVF 196 (384)
T ss_dssp HTCCBCEECTTCTTCEETT------EEGGGSSSCEEEECCTTSSSC-SS-SCEEEEE
T ss_pred hhhhhhhhhceecccccCC------EecCcccccceeccccccccc-cc-ccchhhh
Confidence 9999999999977654111 112223444555666789876 33 3566654
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.39 E-value=2.4e-12 Score=115.57 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=109.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCC
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGL 159 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~ 159 (280)
..|...+...+|.+.+++++ +. +.+++ +++|+.|..++ +.+++++||+|+.... |..........|+
T Consensus 69 d~Y~~dpt~~~lE~~~a~l~-G~-------e~al~--~~SGt~An~~a--~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~ 135 (456)
T d1c7ga_ 69 EAYAGSENFYHLEKTVKELF-GF-------KHIVP--THQGRGAENLL--SQLAIKPGQYVAGNMY-FTTTRFHQEKNGA 135 (456)
T ss_dssp CCSSSCHHHHHHHHHHHHHH-CC-------SEEEE--ESSHHHHHHHH--HHHHCCTTEEEEESSC-CHHHHHHHHHTTE
T ss_pred hhccCCchHHHHHHHHHHHh-CC-------CeEEE--CCCHHHHHHHH--HHHhcCCCCeEecCcc-hHHHHHHHHHcCc
Confidence 45888878889999999986 22 55566 99999999999 8888999999886654 4445555666787
Q ss_pred eeeEEEee--------cCCCCCcCHHHHHHHHhcCCC-CcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHhCCceeEEcc
Q 023599 160 AMKTYHYY--------DPKTNGLDFQGMLQDLGAAPS-GAIVLLQASGHNPT-GIDPTAQQWEQIRQLMRLKRLLPFFDC 229 (280)
Q Consensus 160 ~~~~v~~~--------~~~~~~~d~~~l~~~~~~~~~-~~~~v~~~~p~NPT-G~~~~~~~l~~i~~~~~~~~~~ii~De 229 (280)
..+.+... +...+.+|++.+++.++++++ +..++++.+++|+. |.+++.+++++|.++|++||+.++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~ 215 (456)
T d1c7ga_ 136 TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA 215 (456)
T ss_dssp EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence 77655431 123467899999999987643 34588889999986 678899999999999999999999999
Q ss_pred cCC
Q 023599 230 AYQ 232 (280)
Q Consensus 230 ~y~ 232 (280)
+..
T Consensus 216 a~~ 218 (456)
T d1c7ga_ 216 TRC 218 (456)
T ss_dssp TTH
T ss_pred chh
Confidence 863
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.39 E-value=3.8e-12 Score=111.60 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----HHHcCCeeeEE
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----FAAAGLAMKTY 164 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~~~~v 164 (280)
..|.+.+++.- +. +..++ +++|+.|+..+ +++++.+||.|++++..|++.... +...|+++.++
T Consensus 62 ~~le~~la~LE-g~-------~~a~~--~sSGmaAi~~~--~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~ 129 (394)
T d1e5ea_ 62 SNLEGKIAFLE-KT-------EACVA--TSSGMGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFI 129 (394)
T ss_dssp HHHHHHHHHHH-TC-------SEEEE--ESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred HHHHHHHHHHh-CC-------cceee--eccchHHHHHH--HHhhcccccccccccceeehhhHhHHHHhhccceeeecc
Confidence 35777777753 21 33444 99999999999 889999999999999999776554 44678888888
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH-hCCceeEEcccCCCcccCcCCChh
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMR-LKRLLPFFDCAYQGFVMNMDADAL 243 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~-~~~~~ii~De~y~~~~~~~~~~~~ 243 (280)
+. .|.+.++++++++++ +|++.+|.|||..+.+.+ ++++.++ ++++++|+|+.|..-.... +
T Consensus 130 d~-------~d~~~~~~~i~~~t~---lv~~Etp~NP~l~v~Di~---~~~~~~~~~~g~~vvvDnT~atP~~~~--P-- 192 (394)
T d1e5ea_ 130 NT-------AIPGEVKKHMKPNTK---IVYFETPANPTLKIIDME---RVCKDAHSQEGVLVIADNTFCSPMITN--P-- 192 (394)
T ss_dssp CT-------TSTTHHHHHCCTTEE---EEEEESSCTTTCCCCCHH---HHHHHHHTSTTCEEEEECTTTCTTTCC--G--
T ss_pred CC-------CCHHHHHHhhccccc---EEEEeccCCcceeeehhh---hhhhccccccCeEEEecCcccCcccCC--c--
Confidence 75 367788998877655 999999999998887654 5566555 4689999999996554421 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 244 PVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 244 ~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
.+.+.+ |++.|.||.++-.|.=+|-+++.
T Consensus 193 -----l~~GaD-iVvhS~TKy~~GhsDv~~G~v~~ 221 (394)
T d1e5ea_ 193 -----VDFGVD-VVVHSATKYINGHTDVVAGLICG 221 (394)
T ss_dssp -----GGGTCS-EEEEETTTTTTCSSCCCCEEEEE
T ss_pred -----hhcCCC-EEEechhhhcCCCcccccccccc
Confidence 133333 66999999998777777766654
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=3.7e-12 Score=112.56 Aligned_cols=204 Identities=11% Similarity=0.013 Sum_probs=135.2
Q ss_pred CCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCC-------CCCCCHHHHHHHHHHHhCCCCccccCCCeE
Q 023599 41 SPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYL-------PITGLPEFNKLSAKLIFGADSPAIKENRVS 113 (280)
Q Consensus 41 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-------~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~ 113 (280)
+...+||+..+| -|+..-+..++++.+.+.+ -+ .++. ...-..+|.+.+|+++. .+.++
T Consensus 44 G~~~l~f~s~dY---LGl~~hp~v~~a~~~a~~~-~g--~~~~~sr~~~g~~~~~~~lE~~lA~~~g--------~e~al 109 (401)
T d1fc4a_ 44 GSHVINFCANNY---LGLANHPDLIAAAKAGMDS-HG--FGMASVRFICGTQDSHKELEQKLAAFLG--------MEDAI 109 (401)
T ss_dssp SCEEEECCCSCT---TSCTTCHHHHHHHHHHHHH-HC--SCCCSCHHHHCCBHHHHHHHHHHHHHHT--------CSEEE
T ss_pred CCEEEEEEcccc---ccccCCHHHHHHHHHHHHH-hC--CCcccceeeccCcHHHHHHHHHHHHhhc--------CCceE
Confidence 456889987766 3333333444444444431 11 1121 12234578899998862 26667
Q ss_pred EeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH---hcCCCCc
Q 023599 114 TVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL---GAAPSGA 190 (280)
Q Consensus 114 ~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~---~~~~~~~ 190 (280)
+ +++|..|...+ +.++..++|.|++..-.+..+..-+...++++..++. .|.+.+++.+ .+.+...
T Consensus 110 ~--~~SG~~An~~~--i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~-------~d~~~le~~~~~~~~~~~~~ 178 (401)
T d1fc4a_ 110 L--YSSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARH 178 (401)
T ss_dssp E--ESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSS
T ss_pred E--ecchhhhhHHH--HHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcC-------CChHHHHHHHHHhhhcccCc
Confidence 6 99999999999 7788899999999998888777777777888776654 3555555544 4443444
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhh-cCCeEEEEeccccccccc
Q 023599 191 IVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVA-DGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 191 ~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~ 268 (280)
+++++..-.+..|...+ ++++.++|++||+++|+||++........ ... ..... .++..++++|+||.++
T Consensus 179 ~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~---~~~~~~~~~~dii~~tl~Ka~g-- 250 (401)
T d1fc4a_ 179 VLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS---HEYCDVMGRVDIITGTLGKALG-- 250 (401)
T ss_dssp EEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH---HHHTTCTTCCSEEEEESSSTTC--
T ss_pred eEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCcc---chhccCCCCCeEEEeecccccc--
Confidence 57776666666776665 67778899999999999999998887532 122 22222 2345578999999985
Q ss_pred ccccceEEE
Q 023599 269 GERVGALSV 277 (280)
Q Consensus 269 G~RvG~~v~ 277 (280)
|...|++..
T Consensus 251 g~~Gg~v~g 259 (401)
T d1fc4a_ 251 GASGGYTAA 259 (401)
T ss_dssp SSSCEEEEE
T ss_pred cCCcccccC
Confidence 555666654
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.32 E-value=2.1e-11 Score=106.38 Aligned_cols=162 Identities=11% Similarity=-0.040 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh-hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEe
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK-HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHY 166 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~-~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~ 166 (280)
...|.+.+++++.. ...+. +++||.|+.++ +.++ +.+||+|++|.-+|......+...|++++.+++
T Consensus 23 ~~~fE~~~~~~~~~--------~~~~~--~~SgT~Al~la--l~~l~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di 90 (374)
T d1o69a_ 23 VNRFEQSVKDYSKS--------ENALA--LNSATAALHLA--LRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDC 90 (374)
T ss_dssp HHHHHHHHHHHHCC--------SEEEE--ESCHHHHHHHH--HHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECB
T ss_pred HHHHHHHHHHHHCc--------CeEEE--eCCHHHHHHHH--HHHcCCCCcCEEEeCCcchHhhHHHHhhccceeEeccc
Confidence 67899999999633 34455 99999999999 6665 668999999999999999999999999999998
Q ss_pred ecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 167 YDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
++..+..+.+..+......++.. +++. .+..|... ++.++.++|+++++.||+|.+.+....-.. .
T Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~-aii~---~~~~G~~~---d~~~i~~~~~~~~i~vIED~a~a~g~~~~~------~ 156 (374)
T d1o69a_ 91 -DETYNIDVDLLKLAIKECEKKPK-ALIL---THLYGNAA---KMDEIVEICKENDIVLIEDAAEALGSFYKN------K 156 (374)
T ss_dssp -CTTSSBCHHHHHHHHHHCSSCCC-EEEE---ECGGGCCC---CHHHHHHHHHHTTCEEEEECTTCTTCEETT------E
T ss_pred -ccccccccccccccchhcccccc-cccc---cccccchh---hhHHHHHHhhccCcchhhhhhhhhcceECC------e
Confidence 55444444444443222222222 4443 23344433 477779999999999999999877544111 1
Q ss_pred HhhhcCCeEEEEecccccccccccccceEEE
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
.+...++-.++-...+|.++ +|- -|.++.
T Consensus 157 ~~G~~gd~~~fSf~~~K~l~-tge-GG~i~t 185 (374)
T d1o69a_ 157 ALGTFGEFGVYSYNGNKIIT-TSG-GGMLIG 185 (374)
T ss_dssp ETTSSSSEEEEECCTTSSSC-CSS-CEEEEE
T ss_pred ecCCCCceEEEeccCccccc-ccc-ceeehh
Confidence 12123344455555579887 443 355543
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.32 E-value=9.5e-13 Score=118.51 Aligned_cols=141 Identities=11% Similarity=0.203 Sum_probs=103.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCC-------EEEEeCCCCCChHH
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQH-------TVYLSQPTYGNHPN 152 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd-------~Vli~~P~y~~~~~ 152 (280)
..|....+..+|++.+++++ +. +++++ +++|++|.+++ +..++++|+ .++...+.+..+..
T Consensus 69 ~~y~~~~~~~~le~~~a~l~-g~-------~~~~~--~~sGt~A~~~a--~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~ 136 (465)
T d1ax4a_ 69 EAYAGSRNYYDLKDKAKELF-NY-------DYIIP--AHQGRGAENIL--FPVLLKYKQKEGKAKNPVFISNFHFDTTAA 136 (465)
T ss_dssp CCSSSCHHHHHHHHHHHHHH-CC-------CEEEE--ESSHHHHHHHH--HHHHHHHHHHTTCCSSCEEEESSCCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHH-CC-------CEEEE--CCCcHHHHHHH--HHHHHHHHHhcCCCCCeEEeccchhhhhHH
Confidence 45888888889999999986 22 66776 99999999999 665554443 34555555555556
Q ss_pred HHHHcCCeeeEEEee--------cCCCCCcCHHHHHHHHhcCCCC-cEEEEecCCCCCCC-CCCCHHHHHHHHHHHHhCC
Q 023599 153 FFAAAGLAMKTYHYY--------DPKTNGLDFQGMLQDLGAAPSG-AIVLLQASGHNPTG-IDPTAQQWEQIRQLMRLKR 222 (280)
Q Consensus 153 ~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~~~~~~~~-~~~v~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~ 222 (280)
.....|...+.+... ++..+.+|++.+++++.+..+. ..++++...+|..| .+++.+++++|.++|++||
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 137 HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 666778877655431 2335678999999999875433 34555555555553 5689999999999999999
Q ss_pred ceeEEcccCC
Q 023599 223 LLPFFDCAYQ 232 (280)
Q Consensus 223 ~~ii~De~y~ 232 (280)
+++|.|+++.
T Consensus 217 ~~l~~D~~~~ 226 (465)
T d1ax4a_ 217 IFVVMDSARF 226 (465)
T ss_dssp CCEEEECTTH
T ss_pred CEEEEECcch
Confidence 9999999985
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.29 E-value=7.9e-11 Score=103.34 Aligned_cols=202 Identities=9% Similarity=-0.072 Sum_probs=134.4
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCC----CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeec
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSAD----KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQC 117 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t 117 (280)
.+.++|+..+| -|+..-+...+++.+.+.+-.... .-++...-..+|.+.+|+|+.. +..++ .
T Consensus 45 ~~~~~FsSndY---LGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~--------e~all--~ 111 (396)
T d2bwna1 45 QDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK--------EAALV--F 111 (396)
T ss_dssp EEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC--------SEEEE--E
T ss_pred eEEEEEEcccc---cCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCC--------Cceee--e
Confidence 56899998887 555555555555555554211000 1011111235788899999532 55565 7
Q ss_pred ccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC-CCCcEEEEec
Q 023599 118 LSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA-PSGAIVLLQA 196 (280)
Q Consensus 118 ~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~~v~~~ 196 (280)
++|..|...+...++...+||.|+...-.+......++..+++++.++- .|.+.+++.++.. +...++|+..
T Consensus 112 ~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H-------nd~~~l~~l~~~~~~~~~~~iv~e 184 (396)
T d2bwna1 112 SSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH-------NDVAHLRELIAADDPAAPKLIAFE 184 (396)
T ss_dssp SCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT-------TCHHHHHHHHHHSCTTSCEEEEEE
T ss_pred ecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeec-------chHHHhhhHHhhhcccCceeEEEE
Confidence 8888888777222333568898888887777777778888888887764 3677777776543 3445688888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcC-CChhHHHHhhhcCCeEEEEeccccccccc
Q 023599 197 SGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMD-ADALPVRMFVADGGECLVAQSYSKTMGLY 268 (280)
Q Consensus 197 ~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 268 (280)
.-.+-+|.+.+. .+|++++++||+++++||+++-.+.+.. ... ...+.-.....|+++||||.||..
T Consensus 185 gvySmdGd~apl---~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~--~~~~~~~~~~di~~gTlsKa~g~~ 252 (396)
T d2bwna1 185 SVYSMDGDFGPI---KEICDIAEEFGALTYIDEVHAVGMYGPRGAGV--AERDGLMHRIDIFNGTLAKAYGVF 252 (396)
T ss_dssp SBCTTTCCBCCH---HHHHHHHHHHTCEEEEECTTTTTTSSTTSCCH--HHHHTCGGGCSEEEEESSSTTCSC
T ss_pred eeccCccccccc---HhHHHHhhhhcceeeeccceeeeeeccccccc--hhhcCCceeeeeeeeccccccccc
Confidence 888899998885 5668899999999999999988887432 222 111111223568899999999854
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=2.4e-11 Score=106.30 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH----cCCeeeEE
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA----AGLAMKTY 164 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~----~G~~~~~v 164 (280)
..|.+.+++.-.+ +..++ +++|+.|+..+ +.++.+||.|++....|++....+.. .|+++..+
T Consensus 58 ~~lE~~la~LE~~--------~~a~~--~sSGmaAi~~~---l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~ 124 (393)
T d1n8pa_ 58 ENLERAVAALENA--------QYGLA--FSSGSATTATI---LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT 124 (393)
T ss_dssp HHHHHHHHHHTTC--------SEEEE--ESCHHHHHHHH---HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred HHHHHHHHHHhCC--------ceEEE--ecCchhHHHhh---hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEe
Confidence 4566777776211 33444 88889888644 56788999999999999888777663 46555544
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHH----hCCceeEEcccCCCcccCcCC
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMR----LKRLLPFFDCAYQGFVMNMDA 240 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~----~~~~~ii~De~y~~~~~~~~~ 240 (280)
+. +.+.++++++++++ +|++.+|.|||..+.+.+ +|+++|+ ++|+++|+|+.|..-...
T Consensus 125 ~~--------~~~~~~~~i~~~t~---lv~~EspsNP~l~v~Di~---~ia~~a~~~~~~~g~~lvVDnT~atP~~~--- 187 (393)
T d1n8pa_ 125 ND--------LLNDLPQLIKENTK---LVWIETPTNPTLKVTDIQ---KVADLIKKHAAGQDVILVVDNTFLSPYIS--- 187 (393)
T ss_dssp SS--------HHHHHHHHSCSSEE---EEEECSSCTTTCCCCCHH---HHHHHHHHHTTTTTCEEEEECTTTHHHHC---
T ss_pred ec--------chHHHHHHhhhhcc---eeEecCcchhhhhccchh---hhhhhhhhhcccCCceEEEecCccCcccC---
Confidence 32 45778888876654 999999999998888755 4555555 789999999998654331
Q ss_pred ChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 241 DALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+ ..+.+.+ |++.|.||.++-.|-=+|=+++
T Consensus 188 -----~-Pl~~GAD-iVvhS~TKyi~GhsDv~~G~v~ 217 (393)
T d1n8pa_ 188 -----N-PLNFGAD-IVVHSATKYINGHSDVVLGVLA 217 (393)
T ss_dssp -----C-GGGGTCS-EEEEETTTTTTCSSCCCCEEEE
T ss_pred -----C-chhhCCC-EEEEccccccCCCCccccceee
Confidence 1 1233334 6699999999765544443433
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.26 E-value=2.5e-11 Score=101.90 Aligned_cols=162 Identities=14% Similarity=0.004 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEE
Q 023599 62 LNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVY 141 (280)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vl 141 (280)
.|.+.+++.+.. .....+|++..+.+++|+.+++++.. .+++|++ |+||++|+.++ +.....++++++
T Consensus 13 ~P~v~eAl~~~~--~~~~~~y~~~~~~~~lr~~ia~~~g~------~~~~v~~--tsggtean~~a--~~~~~~~~~~~~ 80 (340)
T d1svva_ 13 HPKILDLMARDN--MTQHAGYGQDSHCAKAARLIGELLER------PDADVHF--ISGGTQTNLIA--CSLALRPWEAVI 80 (340)
T ss_dssp CHHHHHHHHHHT--TCCCCSTTCSHHHHHHHHHHHHHHTC------TTSEEEE--ESCHHHHHHHH--HHHHCCTTEEEE
T ss_pred CHHHHHHHHHHh--hcCCCCCCCCHHHHHHHHHHHHHhCC------CcceEEE--cCCHHHHHHHH--HHHHhhhccccc
Confidence 344544455433 33346687777788999999999732 2468888 99999999999 788889999999
Q ss_pred EeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHH
Q 023599 142 LSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLM 218 (280)
Q Consensus 142 i~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~ 218 (280)
+..+.+..+.......+.....+.. .......+.+......... ......++.+.++|.+|.+...+++..+.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (340)
T d1svva_ 81 ATQLGHISTHETGAIEATGHKVVTA-PCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASC 159 (340)
T ss_dssp EETTSHHHHSSTTHHHHTTCCEEEE-CCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHH
T ss_pred cccccceeeeecccccccceeeeec-ccccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhccc
Confidence 9988775443222222222222222 1222233444444443322 12223344444556677788899999999999
Q ss_pred HhCCceeEEcccCCCccc
Q 023599 219 RLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 219 ~~~~~~ii~De~y~~~~~ 236 (280)
++++.+++.|++|.....
T Consensus 160 ~~~g~~~~~d~a~~~~~~ 177 (340)
T d1svva_ 160 KEHGLYLFLDGARLASAL 177 (340)
T ss_dssp HHHTCEEEEECTTHHHHH
T ss_pred ccccceeeeeccceeeee
Confidence 999999999999965433
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.23 E-value=2.1e-10 Score=101.21 Aligned_cols=164 Identities=13% Similarity=0.037 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHH--HhhcCCCEEEEeCCCCCChHHH----HHHcCCeee
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFL--AKHYYQHTVYLSQPTYGNHPNF----FAAAGLAMK 162 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~--~~~~~Gd~Vli~~P~y~~~~~~----~~~~G~~~~ 162 (280)
++.|+.+++++.... ++.+++ +.++++++.+++... ....+||+|++.+-.|+..... .+..|+++.
T Consensus 69 e~aR~~ia~llga~~-----~~~i~~--~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~ 141 (408)
T d1t3ia_ 69 EAVRNKVAKFINARS-----PREIVY--TRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLK 141 (408)
T ss_dssp HHHHHHHHHHTTCSC-----GGGEEE--ESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHhCCCC-----cccEEe--ecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEe
Confidence 457888888874332 366776 899999998873221 2356899999999888765443 345799999
Q ss_pred EEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCCh
Q 023599 163 TYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADA 242 (280)
Q Consensus 163 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~ 242 (280)
.++. ..+...+.+.+++++.+++ ++|+++..+|-||..++.+ +|.++|+++|+++++|.+...-..+. +
T Consensus 142 ~~~~--~~~~~~~~~~l~~~~~~~t---~lv~i~~~~~~tG~~~p~~---~i~~~~~~~g~~~ivDa~q~~g~~~i--d- 210 (408)
T d1t3ia_ 142 FVQL--DEQESFDLEHFKTLLSEKT---KLVTVVHISNTLGCVNPAE---EIAQLAHQAGAKVLVDACQSAPHYPL--D- 210 (408)
T ss_dssp EECB--CTTSSBCHHHHHHHCCTTE---EEEEEESBCTTTCBBCCHH---HHHHHHHHTTCEEEEECTTTTTTSCC--C-
T ss_pred eeec--cccccccHHHhhhccCCCc---eEEEEecccccccccCcHH---HHhhhhhccCceeeeccceecccccc--c-
Confidence 9987 3455789999999886654 4899999999999999865 56788999999999999876554432 1
Q ss_pred hHHHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 243 LPVRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 243 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.+.+.. +++.|.-|.+|-+ .+|++.+.
T Consensus 211 -----~~~~~~D-~~~~s~hK~~gp~--G~g~l~v~ 238 (408)
T d1t3ia_ 211 -----VQLIDCD-WLVASGHKMCAPT--GIGFLYGK 238 (408)
T ss_dssp -----HHHHTCS-EEEEEGGGTTSCT--TCEEEEEC
T ss_pred -----ccccCCc-eEEeccccccCCC--Cccccccc
Confidence 1122233 5689999977644 46766654
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=3.7e-11 Score=107.17 Aligned_cols=153 Identities=11% Similarity=0.030 Sum_probs=106.4
Q ss_pred cccchhHHHHHHHHHH---hhcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEee-cCCCCCcCHHHHHHHHhcC-CCCcE
Q 023599 117 CLSGSGSLRIGADFLA---KHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHYY-DPKTNGLDFQGMLQDLGAA-PSGAI 191 (280)
Q Consensus 117 t~g~~~al~~~~~~~~---~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~~~~~-~~~~~ 191 (280)
|+|++++..+++ +.+ ...+++.|+++...+..+...+..+|++.+.|+.. +.+++.+|++.|++++.+. .++.+
T Consensus 118 ~~~~t~~~~~~~-l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~ 196 (445)
T d3bc8a1 118 VPMATGMSLTLC-FLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHIL 196 (445)
T ss_dssp ESSCHHHHHHHH-HHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEE
T ss_pred cccchHHHHHHH-HHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccCeE
Confidence 777776555442 222 23467899999999988888899999998888532 3456889999999999764 23456
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGER 271 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 271 (280)
+|+.+.|+|++|.+-+ +++|+++|+++|+++++|++|+...... ... .......+.--++..|..|.++. +.-
T Consensus 197 ~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~--~~~-~~~~~~~~~vd~~~~s~hK~~~~-p~g 269 (445)
T d3bc8a1 197 CLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKC--MHL-IQQGARVGRIDAFVQSLDKNFMV-PVG 269 (445)
T ss_dssp EEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH--HHH-HHHHHHHSCCCEEEEEHHHHHSC-CSS
T ss_pred EEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhc--ccc-chhccCcCCcceEEecCcccccc-CCC
Confidence 8888999999998765 6778999999999999999997654311 001 11111222212557888998874 344
Q ss_pred cceEEE
Q 023599 272 VGALSV 277 (280)
Q Consensus 272 vG~~v~ 277 (280)
.|++++
T Consensus 270 ~~~l~~ 275 (445)
T d3bc8a1 270 GAIIAG 275 (445)
T ss_dssp CEEEEE
T ss_pred Cceeee
Confidence 555544
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.20 E-value=1e-10 Score=99.11 Aligned_cols=174 Identities=11% Similarity=-0.041 Sum_probs=120.2
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccch
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGS 121 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~ 121 (280)
++.++|...++ - + ..+.+.+++++.. .+....|++.....++|+.+++++. . +..+++ |+||+
T Consensus 2 ~~~~~f~s~n~---~--g-~~P~v~~A~~~a~--~~~~~~~~~~~~~~~l~~~la~~~g-~------~~~v~f--~~sGt 64 (345)
T d1v72a1 2 PPALGFSSDNI---A--G-ASPEVAQALVKHS--SGQAGPYGTDELTAQVKRKFCEIFE-R------DVEVFL--VPTGT 64 (345)
T ss_dssp CCCCBCSCGGG---C--C-CCHHHHHHHHHTT--SSCCCSTTCSHHHHHHHHHHHHHHT-S------CCEEEE--ESCHH
T ss_pred CCCcCcCCCCC---C--C-CCHHHHHHHHHHh--ccCccccCCCHHHHHHHHHHHHHHC-C------CcEEEE--CCchH
Confidence 45677775442 1 2 2344555555533 2334557777778899999999973 2 145666 99999
Q ss_pred hHHHHHHHHHHhhcCCCEEEEeCCCCCCh---HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC----CCcEEEE
Q 023599 122 GSLRIGADFLAKHYYQHTVYLSQPTYGNH---PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP----SGAIVLL 194 (280)
Q Consensus 122 ~al~~~~~~~~~~~~Gd~Vli~~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~~v~ 194 (280)
+|+..+ +...+.+++.+++.......+ .......+..+..++. ......+++.+++.+.+.. .....++
T Consensus 65 ~An~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 140 (345)
T d1v72a1 65 AANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD--GPAAKLDIVRLRERTREKVGDVHTTQPACV 140 (345)
T ss_dssp HHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred HHHHHH--HHHHHhcCCccccccccceeeechhhHHHhcCcccccccc--cccccccHHHhhhhhcccccccccccceee
Confidence 999999 777778888877766543222 2233344555555543 3345689999999987652 1234566
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
..++.|++|...+.++++++.++|++|+++++.|+++.....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~ 182 (345)
T d1v72a1 141 SITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANAL 182 (345)
T ss_dssp EEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHH
T ss_pred eeeccccccccccchhhhhHHHHHHhcCceeeecccccceec
Confidence 677889999999999999999999999999999999865443
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.16 E-value=2.3e-10 Score=101.68 Aligned_cols=151 Identities=11% Similarity=0.016 Sum_probs=105.2
Q ss_pred cccchhHHHHHHHHHHh--hcCCCEEEEeCCCCCChHHHHHHcCCeeeEEEe-ecCCCCCcCHHHHHHHHhcC--CCCcE
Q 023599 117 CLSGSGSLRIGADFLAK--HYYQHTVYLSQPTYGNHPNFFAAAGLAMKTYHY-YDPKTNGLDFQGMLQDLGAA--PSGAI 191 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~--~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~~~~~--~~~~~ 191 (280)
..|+++++.++ +.+. ..++++|+++.-.+..+...+...|++++.++. .+++++.+|+++|++++.+. .++..
T Consensus 136 ~~~t~~~~~~~--l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 213 (434)
T d2z67a1 136 PISTGMSISLC--LSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP 213 (434)
T ss_dssp SSCHHHHHHHH--HHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHH--HHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCce
Confidence 45555555555 3332 347899999999988888888889999888864 23455789999999999763 33456
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGER 271 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 271 (280)
+|+.++|++++|.+-+ +++|+++|++||+++++|++|+....-. ... .......+.. +++.|+.|.++ .+..
T Consensus 214 ~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~--~~~-~~~~~~~~~D-~~~~s~hK~l~-~~~g 285 (434)
T d2z67a1 214 CVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY--LEK-LKKAFKYRVD-AVVSSSDKNLL-TPIG 285 (434)
T ss_dssp EEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH--HHH-HHHHHTSCCS-EEEEEHHHHHC-CCSS
T ss_pred EEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhc--ccc-ccccccCCcc-eEEEcCccccc-cCCC
Confidence 8888899999998765 6678999999999999999997644210 001 1122223333 45889999987 3444
Q ss_pred cceEEE
Q 023599 272 VGALSV 277 (280)
Q Consensus 272 vG~~v~ 277 (280)
.|++.+
T Consensus 286 ~~~~~~ 291 (434)
T d2z67a1 286 GGLVYS 291 (434)
T ss_dssp CEEEEE
T ss_pred cccccc
Confidence 454443
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.08 E-value=1e-10 Score=102.72 Aligned_cols=165 Identities=14% Similarity=0.014 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHH----HHhhcCCCEEEEeCCCCCChHHHHHHcCCeeeEE
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADF----LAKHYYQHTVYLSQPTYGNHPNFFAAAGLAMKTY 164 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~----~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~~~~~v 164 (280)
+..|+.+|+++.. ++++|++ |.++++++..+... .....+|+.|++.+-.+..........+.++..+
T Consensus 73 e~~R~~iA~llga------~~~ei~~--~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 144 (404)
T d1qz9a_ 73 ERLGNRLATLIGA------RDGEVVV--TDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQ 144 (404)
T ss_dssp HHHHHHHHTTTTC------CTTSEEE--CSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCC------CCCcEEE--ecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeee
Confidence 4688888888643 3588888 99999998876221 1223578888888877765544443333333222
Q ss_pred EeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 165 HYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 165 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
+.. .....+.+.+++++.++++ +|+++..+|.||..++. ++|+++|+++++.+++|.+..--.....
T Consensus 145 ~~~--~~~~~~~~~~~~~i~~~T~---lV~i~~v~~~tG~~~pv---~~i~~~~~~~~~~~~vD~~q~~g~~~~~----- 211 (404)
T d1qz9a_ 145 GYT--LRLVDSPEELPQAIDQDTA---VVMLTHVNYKTGYMHDM---QALTALSHECGALAIWDLAHSAGAVPVD----- 211 (404)
T ss_dssp SCE--EEEESSGGGHHHHCSTTEE---EEEEESBCTTTCBBCCH---HHHHHHHHHHTCEEEEECTTTTTTSCCC-----
T ss_pred cee--ccccccchhHHHhcCCCce---EEEEecccccccceecH---HHHhccccccccceeEEeeccccccccc-----
Confidence 220 1123577888998877655 99999999999999974 5668899999999999998876655421
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+.+.+. -.++.|..|.+..+.--.|++...
T Consensus 212 ---~~~~~~-d~~~~s~~K~~~~~~g~~g~~~~~ 241 (404)
T d1qz9a_ 212 ---LHQAGA-DYAIGCTYKYLNGGPGSQAFVWVS 241 (404)
T ss_dssp ---HHHHTC-SEEEECSSSTTCCCTTCCCEEEEC
T ss_pred ---cccccc-eEEEEechhhcccCCceEEEEEec
Confidence 112222 355777778775444446666543
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.03 E-value=1.5e-09 Score=94.39 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=119.9
Q ss_pred cchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhh-cCC-
Q 023599 60 LLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKH-YYQ- 137 (280)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~-~~G- 137 (280)
...+.++.+.+.+. .+ .|....-...|.+.+++++.. .+++. +++|+.|+.++ +.++. .+|
T Consensus 10 ~~~~~~~~v~~~l~--~~---~~~~G~~v~~fE~~~~~~~g~--------k~ai~--~~Sgt~Al~~a--l~al~~~~~~ 72 (371)
T d2fnua1 10 LDKEDKKAVLEVLN--SK---QLTQGKRSLLFEEALCEFLGV--------KHALV--FNSATSALLTL--YRNFSEFSAD 72 (371)
T ss_dssp CCHHHHHHHHHHHT--SS---CCSSSHHHHHHHHHHHHHHTC--------SEEEE--ESCHHHHHHHH--HHHSSCCCTT
T ss_pred CCHHHHHHHHHHHc--CC---CccCCHHHHHHHHHHHHHHCc--------CeEEE--EecHHHHHHHH--HHHhcccCCC
Confidence 44555555555444 22 233222367899999999733 34455 99999999999 66643 344
Q ss_pred -CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHH
Q 023599 138 -HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQ 216 (280)
Q Consensus 138 -d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~ 216 (280)
|+|+++.-+|......+...|++++.++. +.++ .++.+.+++.+.++++ +++. .+.-|...+ +.++.+
T Consensus 73 ~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi-~~~~-~~~~~~~~~~~~~~t~---avi~---vh~~G~~~~---~~~i~~ 141 (371)
T d2fnua1 73 RNEIITTPISFVATANMLLESGYTPVFAGI-KNDG-NIDELALEKLINERTK---AIVS---VDYAGKSVE---VESVQK 141 (371)
T ss_dssp SCEEEECSSSCTHHHHHHHHTTCEEEECCB-CTTS-SBCGGGSGGGCCTTEE---EEEE---ECGGGCCCC---HHHHHH
T ss_pred CCeeecccccccccceeeeccCcccccccc-cccc-cccchhhhhhccchhh---cccc---ccccccccc---cccccc
Confidence 48999999999888888899999999998 5555 4566777776655433 4443 245565554 567788
Q ss_pred HHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 217 LMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 217 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+|+++++++|+|.+.+....-.. ......++-.++-...+|.++ +|- -|.++.
T Consensus 142 ~~~~~~i~lIEDaaqa~Ga~~~~------~~~G~~g~~~~~Sf~~~K~l~-~g~-GG~i~t 194 (371)
T d2fnua1 142 LCKKHSLSFLSDSSHALGSEYQN------KKVGGFALASVFSFHAIKPIT-TAE-GGAVVT 194 (371)
T ss_dssp HHHHHTCEEEEECTTCTTCEETT------EETTSSSSEEEEECCTTSSSC-CSS-CEEEEE
T ss_pred cccccchhhccchhhccCceecc------ccCCccccccccccccccccc-ccc-ceEEEe
Confidence 99999999999999877654211 111123334455555589986 454 455543
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=4.3e-10 Score=98.13 Aligned_cols=163 Identities=11% Similarity=0.077 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChH--HHHHHcCCeeeEEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHP--NFFAAAGLAMKTYH 165 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~--~~~~~~G~~~~~v~ 165 (280)
..+.|+.+++++.... +..|++ +.|||++++++ +.+++.+|+++++...++.... ......+..+..+.
T Consensus 54 ~~ea~~~l~~llg~~~-----~~~ii~--~gsgT~a~~~~--i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (388)
T d1h0ca_ 54 MDEIKEGIQYVFQTRN-----PLTLVI--SGSGHCALEAA--LVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMT 124 (388)
T ss_dssp HHHHHHHHHHHHTCCC-----SEEEEE--SSCHHHHHHHH--HHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCB
T ss_pred HHHHHHHHHHHhCCCC-----CcEEEE--cCcHHHHHHHH--HHHhhccCCceeeecccceeeeeccccccccccccccc
Confidence 4667788877765432 134555 89999999999 8888999999999987775433 33345666666666
Q ss_pred eecCCCCCcCHHHHHHHHhcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 166 YYDPKTNGLDFQGMLQDLGAA-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
. +.....|.+.+++.+... ++ ++++++.+|.||.+.+ +++|.++|+++|+++++|.+..-.....+
T Consensus 125 ~--~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~g~~~~d----- 191 (388)
T d1h0ca_ 125 K--DPGGHYTLQEVEEGLAQHKPV---LLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASLGGTPLY----- 191 (388)
T ss_dssp C--CTTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTTTTSCCC-----
T ss_pred c--CCccccchHHHHHHhccCCcc---eEEEeeeeeccccccC---HHHHHHHhhcccccceecccccccccccc-----
Confidence 5 344578888888877653 33 7777888999999887 55678899999999999998866544311
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+.+.+.. +++.|.-|.++.|+ -+|++++
T Consensus 192 ---~~~~~~D-~~~~s~~K~~~gp~-g~~~~~~ 219 (388)
T d1h0ca_ 192 ---MDRQGID-ILYSGSQKALNAPP-GTSLISF 219 (388)
T ss_dssp ---TTTTTCS-EEEEESSSTTCCCT-TCEEEEE
T ss_pred ---ccccccc-eecccccccccCCC-ceEEEee
Confidence 1112222 55777788775333 3444443
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.2e-09 Score=97.90 Aligned_cols=141 Identities=9% Similarity=0.078 Sum_probs=103.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCE---------EEEeCCCCCCh
Q 023599 80 KEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHT---------VYLSQPTYGNH 150 (280)
Q Consensus 80 ~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~---------Vli~~P~y~~~ 150 (280)
..|...++..+|++.+++++. . +.++. +++|++|..++ +..++.+||. +......|...
T Consensus 68 ~~Y~~~~~~~~le~~~a~l~G-~-------~~~~~--~~sGt~A~~~a--~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 135 (467)
T d2v1pa1 68 EAFSGSRSYYALAESVKNIFG-Y-------QYTIP--THQGRGAEQIY--IPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135 (467)
T ss_dssp CCSSSCHHHHHHHHHHHHHTC-C-------SEEEE--ECSSTTTHHHH--HHHHHHHHHHHHCCCTTTCEEEESSCCHHH
T ss_pred hhhcCCchHHHHHHHHHHHHC-C-------CEEEE--CCCCHHHHHHH--HHHHhhccceEecCCCCcEEEEeccccccc
Confidence 458777788899999999852 2 45555 99999999999 6666666543 44455555555
Q ss_pred HHHHHHcCCeeeEEEeec--------CCCCCcCHHHHHHHHhcCC-CCcEEEEecCCCCCC-CCCCCHHHHHHHHHHHHh
Q 023599 151 PNFFAAAGLAMKTYHYYD--------PKTNGLDFQGMLQDLGAAP-SGAIVLLQASGHNPT-GIDPTAQQWEQIRQLMRL 220 (280)
Q Consensus 151 ~~~~~~~G~~~~~v~~~~--------~~~~~~d~~~l~~~~~~~~-~~~~~v~~~~p~NPT-G~~~~~~~l~~i~~~~~~ 220 (280)
.......|..++.++... .....+|++.+++.+.+.+ +...++++.+.+|.. |.+++.+++++|.++|++
T Consensus 136 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 666777899888877621 1135689999999997643 223356666666544 788899999999999999
Q ss_pred CCceeEEcccCC
Q 023599 221 KRLLPFFDCAYQ 232 (280)
Q Consensus 221 ~~~~ii~De~y~ 232 (280)
||++++.|++..
T Consensus 216 ~g~~l~~D~a~~ 227 (467)
T d2v1pa1 216 YDIPVVMDSARF 227 (467)
T ss_dssp TTCCEEEECTTH
T ss_pred cCCEEEEechhh
Confidence 999999999963
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=3e-09 Score=94.88 Aligned_cols=152 Identities=14% Similarity=0.007 Sum_probs=108.9
Q ss_pred cccchhHHHHHHHHHHhh-----------cCC-CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHh
Q 023599 117 CLSGSGSLRIGADFLAKH-----------YYQ-HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLG 184 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~-----------~~G-d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 184 (280)
|+||++|+.++ +++.- ..+ ..++++...+..+...++.+|++++.++. +++++.+|++.+++++.
T Consensus 121 t~GgSeA~~~a--~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~-~~~~~~~d~~~L~~~i~ 197 (450)
T d1pmma_ 121 TIGSSEACMLG--GMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPM-RPGQLFMDPKRMIEACD 197 (450)
T ss_dssp ESSHHHHHHHH--HHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCC-BTTBCSCCHHHHHHHCC
T ss_pred eCchHHHHHHH--HHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeee-cCCCCcCcHHHHHHHhh
Confidence 99999999988 44311 122 35777777777788889999999999998 56678999999999997
Q ss_pred cCCCCcEEEEecCCCCCCCCCCCHHHHHHHHH---HHHhCCceeEEcccCCCcccCcCCChhHHHHh-hhcCCeEEEEec
Q 023599 185 AAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQ---LMRLKRLLPFFDCAYQGFVMNMDADALPVRMF-VADGGECLVAQS 260 (280)
Q Consensus 185 ~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~---~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~~S 260 (280)
+++ ++|+.+.++|.||.+=+.+++.+|++ .|+++++|+.+|.+|+.+......+. ..+ .....---+..|
T Consensus 198 ~~t---~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~---~~~~~~~~~aDSi~~s 271 (450)
T d1pmma_ 198 ENT---IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD---IVWDFRLPRVKSISAS 271 (450)
T ss_dssp TTE---EEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT---CCCSTTSTTEEEEEEE
T ss_pred hCc---eEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechh---hhhhhcccceeEeecC
Confidence 654 48888999999999999887766655 46789999999999977643100000 000 011112234677
Q ss_pred ccccccccccccceEEEE
Q 023599 261 YSKTMGLYGERVGALSVV 278 (280)
Q Consensus 261 ~SK~~~~~G~RvG~~v~~ 278 (280)
.-|.++ .-.-+||+.+.
T Consensus 272 ~HK~~~-~p~g~g~l~~r 288 (450)
T d1pmma_ 272 GHKFGL-APLGCGWVIWR 288 (450)
T ss_dssp TTTTTC-CCSSCEEEEES
T ss_pred hhhccC-CCCCeeEEEec
Confidence 889765 56778888764
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.89 E-value=3.6e-09 Score=91.05 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeE
Q 023599 86 TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKT 163 (280)
Q Consensus 86 ~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~ 163 (280)
.-.++.|+.+++++... +++..++.|.|||++++++ +.++..+++.+++....+.. ........+.....
T Consensus 33 ~~~~~~r~~l~~l~~~~------~~~~~i~~t~s~T~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (361)
T d1m32a_ 33 GVVEQIRQQLTALATAS------EGYTSVLLQGSGSYAVEAV--LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHA 104 (361)
T ss_dssp TTHHHHHHHHHHHHCSS------SSEEEEEEESCHHHHHHHH--HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhCCC------CCCEEEEECCCHHHHHHHH--HHHhhhhccccceeeehhhhhhHHHHhhhhhccccc
Confidence 34578899999987543 2443233388899999999 78888888887777655533 22333345655555
Q ss_pred EEeecCCCCCcCH--HHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCC
Q 023599 164 YHYYDPKTNGLDF--QGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDAD 241 (280)
Q Consensus 164 v~~~~~~~~~~d~--~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 241 (280)
+.. ......+. +.......+++ .+++++.-+|-||...+. ++|.++|+++|+++++|.++.-...+.+
T Consensus 105 ~~~--~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~tG~~~~i---~~i~~~~~~~g~~~~vDa~qs~G~~~~d-- 174 (361)
T d1m32a_ 105 YDC--GEVARPDVQAIDAILNADPTI---SHIAMVHSETTTGMLNPI---DEVGALAHRYGKTYIVDAMSSFGGIPMD-- 174 (361)
T ss_dssp EEC--CTTSCCCHHHHHHHHHHCTTC---CEEEEESEETTTTEECCH---HHHHHHHHHHTCEEEEECTTTTTTSCCC--
T ss_pred ccc--cccCCccchhhHHHHHhccCc---cceEEEeeecccccchhh---hhhhhhhcccceeeEeecccccCccccc--
Confidence 554 22222233 33333333333 378888889999998874 5668899999999999999976655321
Q ss_pred hhHHHHhhhcCCeEEEEecccccccc-cccccceEEEE
Q 023599 242 ALPVRMFVADGGECLVAQSYSKTMGL-YGERVGALSVV 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~RvG~~v~~ 278 (280)
+.+. .--+++.|.-|.++. +| +|++++.
T Consensus 175 ------~~~~-~~D~~~~s~~K~l~gp~G--~g~l~~~ 203 (361)
T d1m32a_ 175 ------IAAL-HIDYLISSANKCIQGVPG--FAFVIAR 203 (361)
T ss_dssp ------TTTT-TCSEEEEESSSTTCCCSS--EEEEEEE
T ss_pred ------cccc-ccceEEeeecccccCCCC--ceEEEec
Confidence 1111 234668888898853 45 5666654
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=98.82 E-value=9.3e-09 Score=91.78 Aligned_cols=176 Identities=11% Similarity=-0.035 Sum_probs=100.5
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-CCe
Q 023599 82 YLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-GLA 160 (280)
Q Consensus 82 y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G~~ 160 (280)
+.+..-+.++++.+|+++.. ++.++ .++|+++++.++ +.+.+++||+|+++.-++.........+ +..
T Consensus 62 ~~~~~~i~eae~~~A~~~ga--------~~a~f-~~~Gtt~~n~a~--i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~ 130 (462)
T d1c4ka2 62 LIHEGPAVAAEKHAARVYNA--------DKTYF-VLGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGR 130 (462)
T ss_dssp TTTBTHHHHHHHHHHHHTTC--------SEEEE-ESSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCE
T ss_pred cCCCHHHHHHHHHHHHHhCC--------CeEEE-ECCchHHHHHHH--HHHhcCCCCeEEecccchHHHHHHHHHHhcCC
Confidence 44444467899999998532 44444 266667777777 7788999999999998876555444333 333
Q ss_pred eeE--EEeecCCC-------CCcCHHHHHHHH---------hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCC
Q 023599 161 MKT--YHYYDPKT-------NGLDFQGMLQDL---------GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKR 222 (280)
Q Consensus 161 ~~~--v~~~~~~~-------~~~d~~~l~~~~---------~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~ 222 (280)
+.+ .+. ++.+ ..++.+.+++.. ..++. . ++++. .+|-.|.+.+ +++|+++|+++|
T Consensus 131 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-v~v~~-~~~~~G~~~d---l~~I~~ia~~~g 203 (462)
T d1c4ka2 131 PVYLQTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPF-R-LAVIQ-LGTYDGTIYN---AHEVVKRIGHLC 203 (462)
T ss_dssp EEEECEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCB-S-EEEEE-SBCTTSEEEC---HHHHHHHHGGGB
T ss_pred ceeeeccc-ccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCc-e-eEEEE-eeeeccchhh---HHHHHHHHHHcC
Confidence 333 333 2221 122333333322 22222 2 33332 4466888776 567789999999
Q ss_pred ceeEEcccCCCcccCcCCChhHHHHhhh----cCCeEEEEecccccccccccccceEEE
Q 023599 223 LLPFFDCAYQGFVMNMDADALPVRMFVA----DGGECLVAQSYSKTMGLYGERVGALSV 277 (280)
Q Consensus 223 ~~ii~De~y~~~~~~~~~~~~~~~~~~~----~~~~~i~~~S~SK~~~~~G~RvG~~v~ 277 (280)
+++++|+++.....-............. ...--+++.|++|+++.+ ..|.++.
T Consensus 204 ~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~--~~g~ll~ 260 (462)
T d1c4ka2 204 DYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF--SQTSQIH 260 (462)
T ss_dssp SEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC--TTCEEEE
T ss_pred CEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccc--cceEEEE
Confidence 9999999996654311100100000000 011247899999998743 4455544
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.74 E-value=3.1e-08 Score=85.51 Aligned_cols=201 Identities=20% Similarity=0.230 Sum_probs=128.1
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC---CCCC------HHHHHHHHHHHhCCCCccccCCCe
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP---ITGL------PEFNKLSAKLIFGADSPAIKENRV 112 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~G~------~~lr~~ia~~l~~~~~~~~~~~~i 112 (280)
.+.|+|-..+ | ...+.+.++......++. ..+|+. ..|. +.|....++.+++...
T Consensus 23 ~~~l~LiaSE----N---~~S~~v~~a~~S~l~nky-aeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~-------- 86 (405)
T d1kl1a_ 23 HAKIELIASE----N---FVSRAVMEAQGSVLTNKY-AEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH-------- 86 (405)
T ss_dssp HHSEECCTTC----C---CCCHHHHHHHTSGGGGCC-CCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSE--------
T ss_pred HcCceEeccC----C---cCCHHHHHHhcCcccCcC-cCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCc--------
Confidence 3668897766 5 455556555444432222 222222 2233 2333444455666432
Q ss_pred EEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-----HHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 113 STVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-----FAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 113 ~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
.-|+..+|+.|...+ +.++++|||+|+..++..++|... +.....+.+.+++ +.+++.+|.|++++.+.+..
T Consensus 87 anVqp~SGs~An~av--~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~-d~~~~~ID~d~l~~~a~~~k 163 (405)
T d1kl1a_ 87 ANVQPHSGAQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV-DPETHVIDYDDVREKARLHR 163 (405)
T ss_dssp EECCCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECB-CTTTCSBCHHHHHHHHHHHC
T ss_pred ceeeccCchHHHHHH--HHHhcCCCCEEEEeecccccccccCccccccceEEEEEEecc-chhcccccHHHHHHHHHhhC
Confidence 234588899999999 999999999999999888776432 2233467788888 67788999999999997652
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
+ .+++...-.+|- .-+++++.++|++.|.+++.|-++. .|+.... .+ +..+. .+++ ..|.-|++
T Consensus 164 P--klIi~G~S~y~r-----~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~--~~---~P~~~-aDvv-t~tThKtl- 228 (405)
T d1kl1a_ 164 P--KLIVAAASAYPR-----IIDFAKFREIADEVGAYLMVDMAHIAGLVAAGL--HP---NPVPY-AHFV-TTTTHKTL- 228 (405)
T ss_dssp C--SEEEECCSSCCS-----CCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SC---CSTTT-CSEE-EEESSSTT-
T ss_pred c--ceEEeccccccc-----ccChHHHHHHHhhhCCEEecchhhHhhhhhhhh--cC---Chhhh-hhhe-eccccccc-
Confidence 2 255554434443 2247888999999999999999983 2222211 11 11122 3455 77999998
Q ss_pred ccccccceEEE
Q 023599 267 LYGERVGALSV 277 (280)
Q Consensus 267 ~~G~RvG~~v~ 277 (280)
+|=|-|.+.+
T Consensus 229 -rGPrgg~I~~ 238 (405)
T d1kl1a_ 229 -RGPRGGMILC 238 (405)
T ss_dssp -CCCSCEEEEE
T ss_pred -cCCCCceEEe
Confidence 4779997765
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.72 E-value=3.9e-07 Score=80.36 Aligned_cols=211 Identities=16% Similarity=0.097 Sum_probs=120.5
Q ss_pred CCCCeeEeecceeecCCCCccchHHH-HHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAV-RQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...+|+..|.-...-|+ ..+.+ +++.+++. .. .+...+ ..+...+++.+..... ..+.+.+ ++
T Consensus 50 ~G~~ylD~~~~~~~~~lGh--~hp~i~~ai~~~~~--~~-~~~~~~----~~~~~~la~~~~~~~~---~~~~v~f--~~ 115 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGH--AHPEVIEALKVAME--KG-TSFGAP----CALENVLAEMVNDAVP---SIEMVRF--VN 115 (427)
T ss_dssp TSCEEEESSGGGTTTTTCB--TCHHHHHHHHHHHT--TC-SCCSSC----CHHHHHHHHHHHHHST---TCSEEEE--ES
T ss_pred CCCEEEEechhHHHHhccC--CcHHHHHHHHHHHH--hc-Cccccc----hhHHHHHHHHHHhhCC---ccccccc--cC
Confidence 4678899987752122233 33444 44444443 22 121211 2334444444332211 1256666 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH--------HHcCCee----------eEEEeecCCCCCcCHHHHH
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF--------AAAGLAM----------KTYHYYDPKTNGLDFQGML 180 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~--------~~~G~~~----------~~v~~~~~~~~~~d~~~l~ 180 (280)
+|++|++.+.++.......++|+...-+|.+..... ...+... ..+.. ...|++.++
T Consensus 116 sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----~~~~~~~le 190 (427)
T d2gsaa_ 116 SGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTT-----PYNDLEAVK 190 (427)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEE-----CTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceecc-----CcchHHHHH
Confidence 999999999554433334478888888886642211 1111110 11111 124899999
Q ss_pred HHHhcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEe
Q 023599 181 QDLGAAPSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQ 259 (280)
Q Consensus 181 ~~~~~~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (280)
+.+++.+.+...|++..-.--.|. ..+.+-+++|.++|++||+++|.||+...|... .... ....+..+.++
T Consensus 191 ~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g---~~~~-~~~~gi~PDi~--- 263 (427)
T d2gsaa_ 191 ALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA---YGGV-QEKFGVTPDLT--- 263 (427)
T ss_dssp HHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTB---TTCH-HHHTTCCCSEE---
T ss_pred HHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceec---ccch-HHhcCCCHHHH---
Confidence 999876555555655432222354 446677899999999999999999999877332 1122 22223334554
Q ss_pred cccccccccccccceEEE
Q 023599 260 SYSKTMGLYGERVGALSV 277 (280)
Q Consensus 260 S~SK~~~~~G~RvG~~v~ 277 (280)
.++|.+| .|+-+|.+++
T Consensus 264 ~~gK~lg-gG~p~~a~~~ 280 (427)
T d2gsaa_ 264 TLGKIIG-GGLPVGAYGG 280 (427)
T ss_dssp EECGGGG-TTSCCEEEEE
T ss_pred hhhhccC-CCcceeeeee
Confidence 5678887 6888887665
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=6.7e-08 Score=83.76 Aligned_cols=200 Identities=20% Similarity=0.180 Sum_probs=124.8
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC---CCCC------HHHHHHHHHHHhCCCCccccCCCe
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP---ITGL------PEFNKLSAKLIFGADSPAIKENRV 112 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~G~------~~lr~~ia~~l~~~~~~~~~~~~i 112 (280)
.+.|+|-..+ | ...+.+.++......++. ..+|+. ..|. +.|....++.+++... .
T Consensus 26 ~~~i~LiaSE----N---~~S~~v~~a~~S~l~nkY-aeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~-----a-- 90 (416)
T d1dfoa_ 26 EEHIELIASE----N---YTSPRVMQAQGSQLTNKY-AEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY-----A-- 90 (416)
T ss_dssp HHSEECCTTC----C---CCCHHHHHHHTSGGGGCC-CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-----E--
T ss_pred HcCceEecCc----c---cCCHHHHHHhcCcccCcc-cCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCc-----c--
Confidence 3568997766 5 455556555444432221 222222 2244 2334444455665432 2
Q ss_pred EEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH-----HHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCC
Q 023599 113 STVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF-----FAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAP 187 (280)
Q Consensus 113 ~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~-----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 187 (280)
-|+..+|+.|...+ +.++++|||+|+..+...+++... +.....+.+.+++ + .+..+|.|++++...+..
T Consensus 91 -nVqp~SGs~AN~av--~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~-d-~~~~IDyd~l~~~a~~~k 165 (416)
T d1dfoa_ 91 -NVQPHSGSQANFAV--YTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGI-D-ATGHIDYADLEKQAKEHK 165 (416)
T ss_dssp -ECCCSSHHHHHHHH--HHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECB-C-SSSSBCHHHHHHHHHHHC
T ss_pred -eeecccCccHHHHH--HHHhcCCCCeeeeccccccccccccccccccCceEEEEeccc-C-CccCccHHHHHHHHHHhc
Confidence 24588899999999 899999999999999998887543 2223346666776 3 355699999999987652
Q ss_pred CCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC-cccCcCCChhHHHHhhhcCCeEEEEeccccccc
Q 023599 188 SGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG-FVMNMDADALPVRMFVADGGECLVAQSYSKTMG 266 (280)
Q Consensus 188 ~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 266 (280)
+ + +++...-.+|- .-+++++.++|.+.|.+++.|.++.- |+.... . .+..+.. + ++.+|+-|+|
T Consensus 166 P-k-lIi~G~S~y~r-----~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~--~---~sP~~~a-D-vvt~tThKtl- 230 (416)
T d1dfoa_ 166 P-K-MIIGGFSAYSG-----VVDWAKMREIADSIGAYLFVDMAHVAGLVAAGV--Y---PNPVPHA-H-VVTTTTHKTL- 230 (416)
T ss_dssp C-S-EEEEECSSCCS-----CCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTS--S---CCCTTTS-S-EEEEESSSTT-
T ss_pred c-c-eEEeccccccc-----ccCHHHHHHHHHhcCceEEcchhhhhcceeccc--c---CCccccc-c-eeeeehhhcc-
Confidence 2 2 55543323332 22478889999999999999999832 222111 1 1111222 3 6799999998
Q ss_pred ccccccceEEE
Q 023599 267 LYGERVGALSV 277 (280)
Q Consensus 267 ~~G~RvG~~v~ 277 (280)
.|=|-|.+.+
T Consensus 231 -rGPrggiI~~ 240 (416)
T d1dfoa_ 231 -AGPRGGLILA 240 (416)
T ss_dssp -CCCSCEEEEE
T ss_pred -cCCCceEEEe
Confidence 5779998876
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=4.5e-08 Score=84.79 Aligned_cols=151 Identities=9% Similarity=-0.039 Sum_probs=101.5
Q ss_pred CCCeEEeecccchhHHHHHHHHHHhh---cCCCEEEEeCCCCCCh--HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 109 ENRVSTVQCLSGSGSLRIGADFLAKH---YYQHTVYLSQPTYGNH--PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 109 ~~~i~~v~t~g~~~al~~~~~~~~~~---~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
++.|++ |.|||++++++ +.+++ .+||+|++..-++... ...++..|.....+.. .+.+...+.+.+++.+
T Consensus 57 ~~~i~~--t~sgT~a~~~~--~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 131 (382)
T d2bkwa1 57 SQPFVL--AGSGTLGWDIF--ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP-LKIGESVPLELITEKL 131 (382)
T ss_dssp CEEEEE--ESCTTHHHHHH--HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC-SSTTSCCCHHHHHHHH
T ss_pred CeEEEE--eCcHHHHHHHH--HHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccc-cCCCCccchhHHHHHh
Confidence 355666 99999999999 77765 5899999987655432 3344567877776654 3445567888888887
Q ss_pred hcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccc
Q 023599 184 GAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSK 263 (280)
Q Consensus 184 ~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 263 (280)
.+... .+++++..+|.||...+.+++.+++ .++.+++++++|.+..-...+-+ +...+-. +++.|--|
T Consensus 132 ~~~~~--~~v~~~~~~~~tg~~~~~~~~~~~~-~~~~~~~~~~vDa~qs~g~~pid--------~~~~giD-~~~~s~~K 199 (382)
T d2bkwa1 132 SQNSY--GAVTVTHVDTSTAVLSDLKAISQAI-KQTSPETFFVVDAVCSIGCEEFE--------FDEWGVD-FALTASQK 199 (382)
T ss_dssp HHSCC--SEEEEESEETTTTEECCHHHHHHHH-HHHCTTSEEEEECTTTTTTSCCC--------TTTTTCS-EEEEESSS
T ss_pred hhccc--hheeeeeccccccccccchhhhhhc-cccccceeeeeeccccccccccc--------ccccCee-EEeecccc
Confidence 65422 2777777899999999877664432 23445699999998766554321 1111222 55888899
Q ss_pred cc-cccccccceEEEE
Q 023599 264 TM-GLYGERVGALSVV 278 (280)
Q Consensus 264 ~~-~~~G~RvG~~v~~ 278 (280)
.+ |.+| +|++++.
T Consensus 200 ~l~gP~G--~g~l~vs 213 (382)
T d2bkwa1 200 AIGAPAG--LSISLCS 213 (382)
T ss_dssp TTCCCSC--EEEEEEC
T ss_pred cCcCCCc--hhhhhcc
Confidence 88 5566 4666553
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.66 E-value=2e-07 Score=83.30 Aligned_cols=202 Identities=9% Similarity=-0.037 Sum_probs=125.3
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccc-------cCCCeEEeecccchhHHHHHHHHHHh
Q 023599 61 LLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAI-------KENRVSTVQCLSGSGSLRIGADFLAK 133 (280)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~-------~~~~i~~v~t~g~~~al~~~~~~~~~ 133 (280)
+...+........+ + ....|...+....+.+.+.+|+...-+.+- ....-++ |+||++++..+ +..-
T Consensus 86 ~~~~l~~~~~~~~n-~-n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~--~~Ggs~anl~a--l~~A 159 (476)
T d1js3a_ 86 YPAMLADMLCGAIG-C-IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVI--QGSASEATLVA--LLAA 159 (476)
T ss_dssp HHHHHHHHHHHHHC-C-CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEE--ESCHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHhhc-c-cccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceE--CCcHHHHHHHH--HHHH
Confidence 34444444444442 2 223343444455677777777544322211 1112233 99999988877 3321
Q ss_pred ----h------cCC---------CEEEEeCCCCCChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcC---CCCcE
Q 023599 134 ----H------YYQ---------HTVYLSQPTYGNHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAA---PSGAI 191 (280)
Q Consensus 134 ----~------~~G---------d~Vli~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~ 191 (280)
+ ..| -.|++++-.+......+...|+.+..++. .+++.+|++.|++.+++. ...+.
T Consensus 160 R~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~--d~~~~md~~~L~~~i~~~~~~g~~p~ 237 (476)
T d1js3a_ 160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPF 237 (476)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEecc--CCCCCcCHHHHHHHHHHHHhcCCCcE
Confidence 0 011 15777877777788888899999999998 446789999999999764 34467
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccc
Q 023599 192 VLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGER 271 (280)
Q Consensus 192 ~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 271 (280)
+|+.+..++.||.+=+ +++|.++|++|++|+.+|.+|+.+..-..+...-+..+. ..+.| .-++.|.++.| .-
T Consensus 238 ~VvataGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~--~aDSi-t~d~HK~l~~P-~~ 310 (476)
T d1js3a_ 238 FVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE--FADSF-NFNPHKWLLVN-FD 310 (476)
T ss_dssp EEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGG--GCSEE-EECHHHHSSCC-SS
T ss_pred EEeecCCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCc--cccee-eecCccccccC-Cc
Confidence 8888889999998765 566688899999999999999876542111111111111 11333 45677887644 35
Q ss_pred cceEEE
Q 023599 272 VGALSV 277 (280)
Q Consensus 272 vG~~v~ 277 (280)
+|.+.+
T Consensus 311 ~g~~l~ 316 (476)
T d1js3a_ 311 CSAMWV 316 (476)
T ss_dssp CEEEEE
T ss_pred ceeecc
Confidence 555544
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=98.65 E-value=5.1e-08 Score=84.08 Aligned_cols=189 Identities=15% Similarity=0.111 Sum_probs=115.8
Q ss_pred CCCccchHHHHHHHHHHhccCCCCCCCCCC--CCCHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh
Q 023599 56 EGKPLLLNAVRQAEQLLVNDLSADKEYLPI--TGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK 133 (280)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~ 133 (280)
+|+...++.+.+++.. ....+++.. .-..+.|+.+++++.... ...|++ +.||+++++++ +.++
T Consensus 24 PGP~~v~~~Vl~am~~-----~~~~hr~~ef~~i~~~~r~~l~~ll~~~~-----~~~i~~--~g~gT~~~~~~--~~~~ 89 (377)
T d1vjoa_ 24 PGPSNAHPSVLQAMNV-----SPVGHLDPAFLALMDEIQSLLRYVWQTEN-----PLTIAV--SGTGTAAMEAT--IANA 89 (377)
T ss_dssp SSCCCCCHHHHHHHSS-----CCCCTTSHHHHHHHHHHHHHHHHHHTCCC-----SCEEEE--SSCHHHHHHHH--HHHH
T ss_pred CCCCCCCHHHHHHhCc-----CCCCCCCHHHHHHHHHHHHHHHHHhCCCC-----CeEEEE--cCcHHHHHHHH--HHhc
Confidence 4555666666554322 112333221 124667777877774322 234444 88899999999 8888
Q ss_pred hcCCCEEEEeCCCCCCh--HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhc-CCCCcEEEEecCCCCCCCCCCCHHH
Q 023599 134 HYYQHTVYLSQPTYGNH--PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGA-APSGAIVLLQASGHNPTGIDPTAQQ 210 (280)
Q Consensus 134 ~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~~~~v~~~~p~NPTG~~~~~~~ 210 (280)
+.+|+++++..-.+... .......+.....+.. +.+...+.+..+..... ++. ++++++.+|.||...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~tg~~~~--- 161 (377)
T d1vjoa_ 90 VEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISK--PWGEVFSLEELRTALETHRPA---ILALVHAETSTGARQP--- 161 (377)
T ss_dssp CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECC---
T ss_pred cccccccceeeechhhhhhhhhhhhhccccccccc--CCCCcccchhhhhhhhcCcce---eeeeeeeeccceeeec---
Confidence 89999998887665432 2333455666666654 33334555555555443 344 6777778899999877
Q ss_pred HHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccccccccceEE
Q 023599 211 WEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGLYGERVGALS 276 (280)
Q Consensus 211 l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v 276 (280)
++++.++|+++|.++++|.+........+ +...+ --+++.|..|.++.|+ .+|+++
T Consensus 162 i~~i~~~~~~~g~~~~vDa~~~~g~~~~~--------~~~~~-~d~~~~s~~K~~~gp~-g~~~~~ 217 (377)
T d1vjoa_ 162 LEGVGELCREFGTLLLVDTVTSLGGVPIF--------LDAWG-VDLAYSCSQKGLGCSP-GASPFT 217 (377)
T ss_dssp CTTHHHHHHHHTCEEEEECTTTTTTSCCC--------TTTTT-CSEEECCSSSTTCSCS-SCEEEE
T ss_pred hhhhhhhhhhccceEEEecchhhhhhhhc--------ccccc-cceeeecccccccCCC-EEEEec
Confidence 56778899999999999999865444211 11122 2345777788775333 444443
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=98.63 E-value=5.2e-08 Score=84.48 Aligned_cols=132 Identities=10% Similarity=0.092 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCCh--HHHHHHcCCeeeEEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNH--PNFFAAAGLAMKTYH 165 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~--~~~~~~~G~~~~~v~ 165 (280)
..+.|+.+++++.... .+-|++ +.|||.+++++ +.+++.+|++|++..-+.... ....+.++...+.+.
T Consensus 52 ~~~~r~~L~~ll~~~~-----~~~i~~--~gsgT~a~ea~--~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~ 122 (388)
T d2ch1a1 52 MDEVKDGLRYIFQTEN-----RATMCV--SGSAHAGMEAM--LSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIE 122 (388)
T ss_dssp HHHHHHHHHHHHTCCC-----SCEEEE--SSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCCC-----CeEEEE--cCcHHHHHHHH--HHHhccccccccccccccccccchhhhhhhcccccccc
Confidence 3567777777774321 133434 88899999999 888889999998886665433 333556788888777
Q ss_pred eecCCCCCcCHHHHHHHHhcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 166 YYDPKTNGLDFQGMLQDLGAA-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
. ++....+.+..++..... ++ ++++++.+|.||...+.+ ++.++|++++.++++|.+..-...
T Consensus 123 ~--~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~t~tG~~~~~~---~i~~~~~~~~~~~~vD~~ss~g~~ 186 (388)
T d2ch1a1 123 G--PPDRPFSLETLARAIELHQPK---CLFLTHGDSSSGLLQPLE---GVGQICHQHDCLLIVDAVASLCGV 186 (388)
T ss_dssp C--CTTSCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCT---THHHHHHHTTCEEEEECTTTBTTB
T ss_pred c--ccccccchhhhhhhhccCCcc---eeeeeecccccccccchh---hhcchhccccceeeeeeeeccccc
Confidence 6 344456777777766543 33 777778899999988765 557788999999999999876654
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.60 E-value=2.9e-07 Score=80.65 Aligned_cols=204 Identities=18% Similarity=0.160 Sum_probs=115.5
Q ss_pred CeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC------C---CCCHHHHHHHHHHHhCCCCccccCCCeE
Q 023599 43 MKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP------I---TGLPEFNKLSAKLIFGADSPAIKENRVS 113 (280)
Q Consensus 43 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~---~G~~~lr~~ia~~l~~~~~~~~~~~~i~ 113 (280)
.-|+|-..+ | ...+.+.++......++. ..+|+. . .-++.|....|+.+++.... ++-+
T Consensus 28 ~~l~LiaSE----N---~~S~~v~~algS~l~nkY-aeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a----~w~v 95 (463)
T d2a7va1 28 RGLELIASE----N---FCSRAALEALGSCLNNKY-SEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGV 95 (463)
T ss_dssp HSEECCTTC----C---CCCHHHHHHHTSGGGTCC-CCC------------CTHHHHHHHHHHHHHTTCCTT----TEEE
T ss_pred cCeeEeccC----C---cCCHHHHHHhcchhcccc-cCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCch----hccC
Confidence 558887766 6 555666655544442222 222211 1 11344445556667766431 2112
Q ss_pred EeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH--------HHcC--CeeeEEEeecCCCCCcCHHHHHHHH
Q 023599 114 TVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF--------AAAG--LAMKTYHYYDPKTNGLDFQGMLQDL 183 (280)
Q Consensus 114 ~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~--------~~~G--~~~~~v~~~~~~~~~~d~~~l~~~~ 183 (280)
-|+..+|+.|...+ +.+++.|||+|+..++..++|...- ...| .+...+.+ +++++.+|.+++++..
T Consensus 96 NVqp~SGs~An~av--~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~-d~~~~~IDyd~~~~~a 172 (463)
T d2a7va1 96 NVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTA 172 (463)
T ss_dssp ECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCB-CTTTCSBCHHHHHHHH
T ss_pred CccccccHHHHHHH--HHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeec-cCCCCcCcHHHHHHHH
Confidence 34588899999999 9999999999999998887775321 1122 24455555 5667889999999998
Q ss_pred hcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCC-CcccCcCCChhHHHHhhhcCCeEEEEecc
Q 023599 184 GAA-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQ-GFVMNMDADALPVRMFVADGGECLVAQSY 261 (280)
Q Consensus 184 ~~~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 261 (280)
.+. |+ +++...-.+|- .-+++++.++|.+.|.+++.|-++. .|+.....+ .| .+. .+ |+.+|+
T Consensus 173 ~~~kPk---lIi~G~S~y~r-----~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~-sP----~~~-aD-vvt~tT 237 (463)
T d2a7va1 173 RLFRPR---LIIAGTSAYAR-----LIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP-SP----FKH-AD-IVTTTT 237 (463)
T ss_dssp HHHCCS---EEEECCSSCCS-----CCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC-CG----GGT-CS-EEEEES
T ss_pred hhcCCc---eEEeccccccc-----ccCHHHHHHHhhcccceEEechhhhhHHhhhhhhc-Ch----hhh-hh-hhhchh
Confidence 765 33 66654434443 2257788888999999999999982 233321111 11 122 23 557899
Q ss_pred cccccccccccceEEEE
Q 023599 262 SKTMGLYGERVGALSVV 278 (280)
Q Consensus 262 SK~~~~~G~RvG~~v~~ 278 (280)
-|+| +|=|-|.+.+-
T Consensus 238 HKTl--rGPrgGiIl~~ 252 (463)
T d2a7va1 238 HKTL--RGARSGLIFYR 252 (463)
T ss_dssp SGGG--CSCSCEEEEEE
T ss_pred hhhh--cCCCceEEEEc
Confidence 9998 58898877654
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=8.8e-07 Score=76.99 Aligned_cols=211 Identities=13% Similarity=0.056 Sum_probs=119.4
Q ss_pred CCCCeeEeecceeecCCCCccchH-HHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLN-AVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...||+..|.-...-| ...+ .++++.+++. .. .+.+..-..+.+..+++.+...... ..+.+.+ ++
T Consensus 35 dG~~ylD~~~g~~~~~lG--h~hp~v~~a~~~~~~--~~---~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~f--~~ 103 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLG--HGNPEVVEAVKRQAE--TL---MAMPQTLPTPMRGEFYRTLTAILPP--ELNRVFP--VN 103 (387)
T ss_dssp TSCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHH--HC---CCCCTTSCCHHHHHHHHHHHHTSCT--TEEEEEE--ES
T ss_pred CCCEEEEcchhHHhhhhc--CCcHHHHHHHHHHHH--hh---cccccccCCchHHHHHHHhhhhccc--cceeecc--cc
Confidence 456788987764212223 2333 3344344443 11 1111111224555555554333221 1245666 99
Q ss_pred cchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHc-CC------------eeeEEEeecCCCCCcCHHHHHHHHhc
Q 023599 119 SGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAA-GL------------AMKTYHYYDPKTNGLDFQGMLQDLGA 185 (280)
Q Consensus 119 g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~-G~------------~~~~v~~~~~~~~~~d~~~l~~~~~~ 185 (280)
+|++|.+.+.++........+|+...-+|.+........ |. .+..+|. .|.+.|++.+.+
T Consensus 104 sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~ 176 (387)
T d1vefa1 104 SGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDE 176 (387)
T ss_dssp SHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCT
T ss_pred CchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCC
Confidence 999999999655444344478999998886654333322 11 1223332 378899988754
Q ss_pred CCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEeccccc
Q 023599 186 APSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKT 264 (280)
Q Consensus 186 ~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 264 (280)
+ ...|++..-..-.|. ..+++-+++|.++|++||+++|.||+...|.--...-. ....+..+.++ .++|.
T Consensus 177 ~---iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~---~~~~~v~PDi~---~~gK~ 247 (387)
T d1vefa1 177 E---TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA---FEHFGIVPDIL---TLAKA 247 (387)
T ss_dssp T---EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST---HHHHTCCCSEE---EECGG
T ss_pred C---eEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcc---cccCCcCCcee---eeccc
Confidence 3 335554322233454 36788899999999999999999999988843211111 12223333444 57888
Q ss_pred ccccccccceEEEE
Q 023599 265 MGLYGERVGALSVV 278 (280)
Q Consensus 265 ~~~~G~RvG~~v~~ 278 (280)
++ .|+=+|.++..
T Consensus 248 l~-gG~~~~~~~~~ 260 (387)
T d1vefa1 248 LG-GGVPLGVAVMR 260 (387)
T ss_dssp GG-TTSSCEEEEEE
T ss_pred CC-CCccccccccc
Confidence 87 67767765543
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=2.1e-07 Score=79.82 Aligned_cols=138 Identities=16% Similarity=0.044 Sum_probs=91.4
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCC--ChHHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYG--NHPNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLL 194 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~ 194 (280)
+.||+.+++++ +.+++.+||+|++..-++. .+...++.+|.++..+.. +.+..++.+.. ...+. ..++
T Consensus 56 ~gsgT~a~e~~--~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~---~~~~~---~~v~ 125 (348)
T d1iuga_ 56 TGSGTLAMEAL--VKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDY--PYGDTPRPEDV---AKEGY---AGLL 125 (348)
T ss_dssp ESCHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCTTTS---CCSSC---SEEE
T ss_pred eCchHHHHHHH--HHhcccccccceeecchHHHHHHHHHHHhcCcccccccc--cCCCccccccc---cccCC---CeeE
Confidence 99999999999 8888999999998876643 245556678888887776 33334444332 12222 2677
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhC--CceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccc-cccccc
Q 023599 195 QASGHNPTGIDPTAQQWEQIRQLMRLK--RLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTM-GLYGER 271 (280)
Q Consensus 195 ~~~p~NPTG~~~~~~~l~~i~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R 271 (280)
+++..+.||...+.+++ .++|+++ +.++++|.+..-.....+ +...+-. +++.|--|.+ |.||+
T Consensus 126 ~~h~eTstG~~~~i~~i---~~~~~~~~~~~l~~vDavss~g~~~i~--------~d~~~iD-~~~~~sqK~l~gppG~- 192 (348)
T d1iuga_ 126 LVHSETSTGALADLPAL---ARAFKEKNPEGLVGADMVTSLLVGEVA--------LEAMGVD-AAASGSQKGLMCPPGL- 192 (348)
T ss_dssp EESEETTTTEECCHHHH---HHHHHHHCTTCEEEEECTTTBTTBCCC--------SGGGTCS-EEEEESSSTTCCCSCE-
T ss_pred EEecchhhhhhccHHHH---HHHHHhhhccceeechhhhcccccccc--------cccccCC-EEEeccccceecCCce-
Confidence 77778899998886555 6677766 478888987655433211 1112223 4578888988 76765
Q ss_pred cceEEEE
Q 023599 272 VGALSVV 278 (280)
Q Consensus 272 vG~~v~~ 278 (280)
|++++.
T Consensus 193 -~~v~~s 198 (348)
T d1iuga_ 193 -GFVALS 198 (348)
T ss_dssp -EEEEEC
T ss_pred -eeeeec
Confidence 666654
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.50 E-value=7.5e-07 Score=78.25 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=129.0
Q ss_pred CCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCC---CCCC------HHHHHHHHHHHhCCCCccccCCCe
Q 023599 42 PMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLP---ITGL------PEFNKLSAKLIFGADSPAIKENRV 112 (280)
Q Consensus 42 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~G~------~~lr~~ia~~l~~~~~~~~~~~~i 112 (280)
...|+|-..+ | ...+.+.++......++. ..+|+. ..|. +.+....|..+++.... .+-
T Consensus 31 ~~~l~LIaSE----N---~~S~~v~~algS~l~nkY-aeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~----~~~ 98 (470)
T d1rv3a_ 31 RVGLELIASE----N---FASRAVLEALGSCLNNKY-SLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ----CWG 98 (470)
T ss_dssp HSSEECCTTC----C---CCCHHHHHHHTSGGGTCC-CCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT----TEE
T ss_pred HcCceEecCC----C---cCCHHHHHHhcchhcccc-cCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChh----hcc
Confidence 3568997766 6 555666555544442221 222211 1233 22333334556654311 222
Q ss_pred EEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHH----------HHHcCCeeeEEEeecCCCCCcCHHHHHHH
Q 023599 113 STVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNF----------FAAAGLAMKTYHYYDPKTNGLDFQGMLQD 182 (280)
Q Consensus 113 ~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~----------~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 182 (280)
+-|+..+|+.|..++ +.+++.|||+|+..+...++|... +.....+...+++ +++++.+|.+++++.
T Consensus 99 anVqp~SGs~An~av--~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v-~~~~~~IDyd~l~~~ 175 (470)
T d1rv3a_ 99 VNVQPYSGSPANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEEN 175 (470)
T ss_dssp EECCCSSHHHHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHH
T ss_pred ccccccCCccHHHHH--HHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEE-ecccCcccHHHHHHH
Confidence 345689999999999 999999999999998877666432 1122346778888 677788999999999
Q ss_pred HhcC-CCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCC-cccCcCCChhHHHHhhhcCCeEEEEec
Q 023599 183 LGAA-PSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQG-FVMNMDADALPVRMFVADGGECLVAQS 260 (280)
Q Consensus 183 ~~~~-~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S 260 (280)
..+. |+ +++..--.+|- .-+++++.++|.+.|.+++.|-++.- |+.....+ .| .+.. + |+.+|
T Consensus 176 a~~~kPk---lIi~G~S~y~r-----~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~-sP----l~~a-D-vvt~t 240 (470)
T d1rv3a_ 176 ARLFHPK---LIIAGTSCYSR-----NLDYGRLRKIADENGAYLMADMAHISGLVVAGVVP-SP----FEHC-H-VVTTT 240 (470)
T ss_dssp HHHHCCS---EEEECCSSCCS-----CCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC-CG----GGTC-S-EEEEE
T ss_pred HHhhCcc---eEeechhhccc-----cCCHHHHHHHHhccCCeEEecchhhhhhccccccC-Ch----hhee-e-eeeee
Confidence 8764 33 66654434443 22577888899999999999999832 22221111 11 1222 3 66999
Q ss_pred ccccccccccccceEEEE
Q 023599 261 YSKTMGLYGERVGALSVV 278 (280)
Q Consensus 261 ~SK~~~~~G~RvG~~v~~ 278 (280)
+-|+| +|=|-|.+.+-
T Consensus 241 THKtl--rGPrgGiI~~~ 256 (470)
T d1rv3a_ 241 THKTL--RGCRAGMIFYR 256 (470)
T ss_dssp SSGGG--CCCSCEEEEEE
T ss_pred hhhhc--cCCcceEEEEc
Confidence 99998 57799987764
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=5.4e-06 Score=72.24 Aligned_cols=210 Identities=12% Similarity=0.131 Sum_probs=116.1
Q ss_pred CCCCeeEeecceeecCCCCccchHHH-HHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeecc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAV-RQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCL 118 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~ 118 (280)
.+...|||..|.-...-| ...+.+ +++.+++.+ ......+....-...+.+.+++.. + .+.+.+ ++
T Consensus 39 dG~~ylD~~~g~~~~~lG--h~~p~i~~Av~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~v~~--~~ 105 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQG--HCHPKIVNALKSQVDK-LTLTSRAFYNNVLGEYEEYITKLF-N-------YHKVLP--MN 105 (404)
T ss_dssp TCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHTT-CCCCCTTEEESSHHHHHHHHHHHH-T-------CSEEEE--ES
T ss_pred CCCEEEEecCCHHHHhhc--CCCHHHHHHHHHHHhh-CCCcccccccchHHHHHHhhhhcc-c-------cccccc--cc
Confidence 456788998875322223 233434 444444441 111111212222334445554442 2 256676 99
Q ss_pred cchhHHHHHHHHHHhh-------c-CCCEEEEeCCCCCChHHHHHHc--------CC-----eeeEEEeecCCCCCcCHH
Q 023599 119 SGSGSLRIGADFLAKH-------Y-YQHTVYLSQPTYGNHPNFFAAA--------GL-----AMKTYHYYDPKTNGLDFQ 177 (280)
Q Consensus 119 g~~~al~~~~~~~~~~-------~-~Gd~Vli~~P~y~~~~~~~~~~--------G~-----~~~~v~~~~~~~~~~d~~ 177 (280)
+|++|.+.+.++.... . ...+++...-+|.......... +. .+..+|. .|++
T Consensus 106 sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~ 178 (404)
T d2byla1 106 TGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLP 178 (404)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHH
T ss_pred CccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHH
Confidence 9999999995443211 1 1246776666665432221111 11 1222232 3789
Q ss_pred HHHHHHhcCCCCcEEEEecCCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEE
Q 023599 178 GMLQDLGAAPSGAIVLLQASGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECL 256 (280)
Q Consensus 178 ~l~~~~~~~~~~~~~v~~~~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 256 (280)
.+++.+.+. +..+|++..-..-.| ...+++-+++|.++|++||+++|.||+...|.--.. ... ....+..+.++
T Consensus 179 ~l~~~l~~~--~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~--~~a-~~~~gv~PDi~ 253 (404)
T d2byla1 179 ALERALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLA-VDYENVRPDIV 253 (404)
T ss_dssp HHHHHHTST--TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSG-GGGGTCCCSEE
T ss_pred HHHHhcCCC--CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc--cch-hhhcCCCCCEE
Confidence 999988653 334455543333345 456678899999999999999999999987743211 111 11223233544
Q ss_pred EEecccccccccc-cccceEEEE
Q 023599 257 VAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 257 ~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
.++|.++ .| +-+|.+++.
T Consensus 254 ---~~gK~l~-gG~~p~~av~~~ 272 (404)
T d2byla1 254 ---LLGKALS-GGLYPVSAVLCD 272 (404)
T ss_dssp ---EECGGGG-TTSSCCEEEEEC
T ss_pred ---EECchhh-CCCccceeeeec
Confidence 8899998 56 778877764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=6.7e-06 Score=72.14 Aligned_cols=160 Identities=11% Similarity=0.077 Sum_probs=90.1
Q ss_pred CCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHH-cCC-------------eeeEEEe--ecCCCCC
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAA-AGL-------------AMKTYHY--YDPKTNG 173 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~-~G~-------------~~~~v~~--~~~~~~~ 173 (280)
+.+.+ +++|++|.+.+.++......-.+|+...-+|.+....... .|. .....+. ...+...
T Consensus 102 ~~v~f--~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (425)
T d1sffa_ 102 KKTLL--VTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 179 (425)
T ss_dssp EEEEE--ESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCH
T ss_pred ceeee--eccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccc
Confidence 45565 9999999999965544333446888888888775444332 221 0111111 0000000
Q ss_pred cCH-HHHHHHH--hcCCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhh
Q 023599 174 LDF-QGMLQDL--GAAPSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFV 249 (280)
Q Consensus 174 ~d~-~~l~~~~--~~~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 249 (280)
... ...++.. .....+...+++..-.--.|. ..+++-++.|.++|++||+++|.||+...+.--...-. ....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a---~~~~ 256 (425)
T d1sffa_ 180 DDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFA---MEQM 256 (425)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG---GGGT
T ss_pred hhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhH---HHhc
Confidence 011 1111111 122233445555433333444 56788999999999999999999999988643211111 1112
Q ss_pred hcCCeEEEEecccccccccccccceEEEE
Q 023599 250 ADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 250 ~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+..+.++ .++|.++ .|+-+|.+++.
T Consensus 257 gv~PDi~---~~gK~l~-gG~P~~av~~~ 281 (425)
T d1sffa_ 257 GVAPDLT---TFAKSIA-GGFPLAGVTGR 281 (425)
T ss_dssp TSCCSEE---EECGGGG-TSSCCEEEEEE
T ss_pred CCCccce---ecccccC-CCcceEEEEEc
Confidence 3333444 5899998 68888888764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.20 E-value=8.4e-06 Score=71.60 Aligned_cols=222 Identities=13% Similarity=0.004 Sum_probs=114.0
Q ss_pred CCCCeeEeecceeecCCCCccchHHHHHHHHHHhccCCCCCCCCCCCCCHHHHHHHHHHHhCCCCccccCCCeEEeeccc
Q 023599 40 PSPMKLNLGFGVYRTEEGKPLLLNAVRQAEQLLVNDLSADKEYLPITGLPEFNKLSAKLIFGADSPAIKENRVSTVQCLS 119 (280)
Q Consensus 40 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g 119 (280)
.+...||+..|.-...-|+ -.++..+++.+++.+ .. |.......+-+..+|+.+...... ..+.+.+ +++
T Consensus 39 dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~-~~----~~~~~~~~~~~~~la~~L~~~~~~--~~~~v~f--~~s 108 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGK-LD----HLFSEMLSRPVVDLATRLANITPP--GLDRALL--LST 108 (431)
T ss_dssp TCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHH-CC----CCCTTCCCHHHHHHHHHHHHHSCT--TCCEEEE--ESC
T ss_pred CCCEEEEcccCHHhhhhcC-CCHHHHHHHHHHHhh-cc----ccccccccHHHHHHHHHHHHhCCc--ccceeee--ccc
Confidence 4567899977743122232 223344444444442 11 111111122233344443221110 1267777 999
Q ss_pred chhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHHHHcCC------------eeeEEEeecC---C----CCCc---CHH
Q 023599 120 GSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFFAAAGL------------AMKTYHYYDP---K----TNGL---DFQ 177 (280)
Q Consensus 120 ~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~~~~G~------------~~~~v~~~~~---~----~~~~---d~~ 177 (280)
|++|.+.+.++.......++|+...-+|.+........+. ....++.... . .... +.+
T Consensus 109 GseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (431)
T d1zoda1 109 GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 188 (431)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHH
Confidence 9999999965544444447888888888765443332211 1122221000 0 0001 123
Q ss_pred HHHHHHhc-CCCCcEEEEecCCCCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeE
Q 023599 178 GMLQDLGA-APSGAIVLLQASGHNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGEC 255 (280)
Q Consensus 178 ~l~~~~~~-~~~~~~~v~~~~p~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 255 (280)
.+...+.. .+.+...+++..-.---|. ..+++-+++|.++|++||+++|.||+...|.--...-. ....+-.+.+
T Consensus 189 ~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~---~~~~gv~PDi 265 (431)
T d1zoda1 189 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFA---CQRDGVTPDI 265 (431)
T ss_dssp HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST---HHHHTCCCSE
T ss_pred HHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccc---cccCCCCcch
Confidence 33333322 2333445554433222334 35778899999999999999999999987643211111 1222333344
Q ss_pred EEEecccccccccccccceEEEE
Q 023599 256 LVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 256 i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
+ .++|.++ .|+-+|-++..
T Consensus 266 ~---~~gK~l~-gG~p~~av~~~ 284 (431)
T d1zoda1 266 L---TLSKTLG-AGLPLAAIVTS 284 (431)
T ss_dssp E---EECHHHH-TTSSCEEEEEC
T ss_pred h---ccccccc-cccccceeeee
Confidence 4 5788887 67777766543
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=5.1e-05 Score=66.43 Aligned_cols=161 Identities=11% Similarity=0.011 Sum_probs=92.0
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-----cCCCEEEEeCCCCCChHHHHH-HcCC-------------eeeEEEeecC-
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-----YYQHTVYLSQPTYGNHPNFFA-AAGL-------------AMKTYHYYDP- 169 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-----~~Gd~Vli~~P~y~~~~~~~~-~~G~-------------~~~~v~~~~~- 169 (280)
+.+.+ +++|++|.+.+.++.... ....+|+...-+|.+...... ..|. .....|....
T Consensus 104 ~~v~f--~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
T d1s0aa_ 104 ECVFL--ADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR 181 (429)
T ss_dssp CEEEE--ESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSB
T ss_pred ceeee--ccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccc
Confidence 56766 999999999884443321 233578888888865433222 1111 1122221001
Q ss_pred CC---CCcCHHHHHHHHhcCCCCcEEEEecCC-CCCCCC-CCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhH
Q 023599 170 KT---NGLDFQGMLQDLGAAPSGAIVLLQASG-HNPTGI-DPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALP 244 (280)
Q Consensus 170 ~~---~~~d~~~l~~~~~~~~~~~~~v~~~~p-~NPTG~-~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~ 244 (280)
.. ...+.+.+++.+.+...+...+++... ++--|. ..+++-+++|.++|++||+++|.||++..|.--.. ...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~~ 259 (429)
T d1s0aa_ 182 MDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFA 259 (429)
T ss_dssp C-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSG
T ss_pred cccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc--ccc
Confidence 11 123456666666554444555555432 344444 46889999999999999999999999998843211 111
Q ss_pred HHHhhhcCCeEEEEecccccccccccccceEEEE
Q 023599 245 VRMFVADGGECLVAQSYSKTMGLYGERVGALSVV 278 (280)
Q Consensus 245 ~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~v~~ 278 (280)
....+..++++ .++|.++--+.-+|.++..
T Consensus 260 -~~~~~v~PDi~---~~gK~l~gG~~p~~av~~~ 289 (429)
T d1s0aa_ 260 -CEHAEIAPDIL---CLGKALTGGTMTLSATLTT 289 (429)
T ss_dssp -GGGGTCCCSEE---EECGGGGTSSSCCEEEEEC
T ss_pred -cccceeccccc---ccccccccccccccchhhH
Confidence 11223333444 5678886334677776653
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=97.98 E-value=0.00011 Score=63.73 Aligned_cols=157 Identities=10% Similarity=0.066 Sum_probs=82.9
Q ss_pred CCeEEeecccchhHHHHHHHHHHhh-------c-CCCEEEEeCCCCCChHHHHHHcC----CeeeEEEeecCCC---CCc
Q 023599 110 NRVSTVQCLSGSGSLRIGADFLAKH-------Y-YQHTVYLSQPTYGNHPNFFAAAG----LAMKTYHYYDPKT---NGL 174 (280)
Q Consensus 110 ~~i~~v~t~g~~~al~~~~~~~~~~-------~-~Gd~Vli~~P~y~~~~~~~~~~G----~~~~~v~~~~~~~---~~~ 174 (280)
+.+.+ +.+|++|...+..+.... . ...+++...-+|........... .+....|. .+.. ..-
T Consensus 97 ~~v~~--~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 173 (404)
T d1z7da1 97 DKVLM--MNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPF-APQFSKVPYD 173 (404)
T ss_dssp SEEEE--ESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------CEEEECTT
T ss_pred ceeee--eccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCC-Cccccccccc
Confidence 55666 888999999884443211 1 12367777777765433322111 11111111 0000 012
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCCCCCCCC-CHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCC
Q 023599 175 DFQGMLQDLGAAPSGAIVLLQASGHNPTGIDP-TAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGG 253 (280)
Q Consensus 175 d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~-~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 253 (280)
+.+.++..+... +..+|++..-+.-.|... +++-+++|.++|++||+++|.||+...|.--.. ... ....+..+
T Consensus 174 ~~~~l~~~~~~~--~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~--~~~-~e~~gv~P 248 (404)
T d1z7da1 174 DLEALEEELKDP--NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLC-VHHYNVKP 248 (404)
T ss_dssp CHHHHHHHHTST--TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSG-GGGGTCCC
T ss_pred hHHHHHHHhcCC--CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc--ccc-ccccCCCC
Confidence 566777766432 344555544444556654 556689999999999999999999987743211 111 12223334
Q ss_pred eEEEEecccccccccc-cccceEEEE
Q 023599 254 ECLVAQSYSKTMGLYG-ERVGALSVV 278 (280)
Q Consensus 254 ~~i~~~S~SK~~~~~G-~RvG~~v~~ 278 (280)
.++ +++|.++ .| .-+|.++..
T Consensus 249 Div---t~gK~l~-gG~~p~~~v~~~ 270 (404)
T d1z7da1 249 DVI---LLGKALS-GGHYPISAVLAN 270 (404)
T ss_dssp SEE---EECGGGG-TTSSCCEEEEEC
T ss_pred CEE---EEccccc-CCCCCcccccch
Confidence 555 8899998 45 677776653
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=97.97 E-value=2e-06 Score=73.59 Aligned_cols=150 Identities=11% Similarity=-0.056 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccc-hhHHHHHHHHHHhhcCCCEEEEeCCCC--CChHHHHHHcCCeeeEEE
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSG-SGSLRIGADFLAKHYYQHTVYLSQPTY--GNHPNFFAAAGLAMKTYH 165 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~-~~al~~~~~~~~~~~~Gd~Vli~~P~y--~~~~~~~~~~G~~~~~v~ 165 (280)
.+.|+.+++++.... ..++++ ++|+ +.+++++ ...+..+|+++++..-.. ..+...++..|..+..+.
T Consensus 51 ~~~r~~l~~l~~~~~-----~~~i~~--~~gs~t~~~ea~--~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~ 121 (361)
T d2c0ra1 51 NEAQARLLALLGNPT-----GYKVLF--IQGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAAS 121 (361)
T ss_dssp HHHHHHHHHHTTCCS-----SEEEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHHHhCCCC-----CCEEEE--ECCCchHHHHHH--HhccccCCCceEEEeechhhhhhhhhhhhcCceeeeec
Confidence 446666666653321 235555 5554 5555555 666777888887664322 223455667898888887
Q ss_pred eecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 166 YYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
. +.+...+.+.+++.+... . +..+ +|.||...+.. ++.++|+++|+++++|.+.+-...+-+
T Consensus 122 ~--~~~~~~~~~~~~~~~~~~-~---~~~v---~~~tg~~~~~~---~i~~~~~~~~al~~vDavss~g~~~id------ 183 (361)
T d2c0ra1 122 S--EASNYMTLPKLQEIQLQD-N---AAYL---HLTSNETIEGA---QFKAFPDTGSVPLIGDMSSDILSRPFD------ 183 (361)
T ss_dssp C--GGGTTCSCCCGGGCCCCT-T---EEEE---EEESEETTTTE---ECSSCCCCTTSCEEEECTTTTTSSCCC------
T ss_pred c--ccccccchhhhhhhcccC-c---ceEE---EEecccceecc---eEEEeeccCCceEEEEeeccccccccc------
Confidence 6 333456777766655433 2 2332 57888877654 557889999999999999865544311
Q ss_pred HHhhhcCCeEEEEeccccccccccc
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
..+ ..+ .+.|.+|.++.+|.
T Consensus 184 --~~~--~di-~~~s~~k~~~~~~~ 203 (361)
T d2c0ra1 184 --LNQ--FGL-VYAGAQKNLGPSGV 203 (361)
T ss_dssp --GGG--CSE-EEEETTTTTCCSSC
T ss_pred --ccc--cee-EEEecccccccccC
Confidence 111 133 35678999987774
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.83 E-value=7.8e-05 Score=65.80 Aligned_cols=143 Identities=8% Similarity=-0.024 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHh--------------------------hcCCCEEEEe
Q 023599 90 EFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAK--------------------------HYYQHTVYLS 143 (280)
Q Consensus 90 ~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~--------------------------~~~Gd~Vli~ 143 (280)
.+.+.+++.+...... ..+.+.+ +++|++|.+.+.++... ..+..+|+..
T Consensus 100 ~~a~~lae~l~~~~~~--~~~~v~f--~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~ 175 (461)
T d1ohwa_ 100 NFVEKLRESLLSVAPK--GMSQLIT--MACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF 175 (461)
T ss_dssp THHHHHHHTGGGGCCT--TCCEEEE--ESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEE
T ss_pred HHHHHHHHHHHhhhcc--Ccceeee--ecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEe
Confidence 4566777765432211 1356777 99999999998443321 0123478888
Q ss_pred CCCCCChHHHHHH-cCC-----------eeeEEEeecCC-CC-----------CcCHHHHHHHH---hcCCCCcEEEEec
Q 023599 144 QPTYGNHPNFFAA-AGL-----------AMKTYHYYDPK-TN-----------GLDFQGMLQDL---GAAPSGAIVLLQA 196 (280)
Q Consensus 144 ~P~y~~~~~~~~~-~G~-----------~~~~v~~~~~~-~~-----------~~d~~~l~~~~---~~~~~~~~~v~~~ 196 (280)
.-+|.+....... .|- .....+..... .. ..+.+.+++.+ ..++.+..+|++.
T Consensus 176 ~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivE 255 (461)
T d1ohwa_ 176 MGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVE 255 (461)
T ss_dssp TTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeec
Confidence 8888764332222 211 11111110000 00 01134444443 3344445566665
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHhCCceeEEcccCCCccc
Q 023599 197 SGHNPTG-IDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVM 236 (280)
Q Consensus 197 ~p~NPTG-~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~ 236 (280)
.-+.-.| ...+++-+++|.++|++||+++|.||++..|.-
T Consensus 256 Pi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gR 296 (461)
T d1ohwa_ 256 PIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGS 296 (461)
T ss_dssp SSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSST
T ss_pred cccccccccCchhhHHHHHHHHHHhhCcceecccccccccc
Confidence 5444445 446788899999999999999999999988854
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=2.1e-05 Score=66.45 Aligned_cols=153 Identities=12% Similarity=-0.065 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEEE
Q 023599 88 LPEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTYH 165 (280)
Q Consensus 88 ~~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~ 165 (280)
..+.|+.+++++.... ++.|++ ++|++.+...++ ...+..+++.+++..-.+.. +....+..|...+.+.
T Consensus 48 ~~~~r~~l~~l~~~~~-----~~~v~~--~~gs~t~~~~a~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (360)
T d1bjna_ 48 AEEAEKDFRDLLNVPS-----NYKVLF--CHGGGRGQFAAV-PLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDA 119 (360)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEEE--ESSHHHHHHHHH-HHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHHhCCCC-----CCEEEE--ECCchHHHHhhh-hhcccccccccceecccchhhhhHHHHhhcCccceeec
Confidence 4567788888875432 135555 666655555442 45566677888887655533 2333344555555544
Q ss_pred eecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHH
Q 023599 166 YYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPV 245 (280)
Q Consensus 166 ~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~ 245 (280)
. ..+...+.+.+++....+++ ++++...+|-||+......+ .++.+++.+++|.+.+-...+-+
T Consensus 120 ~--~~~~~~~~~~~~~~~~~~~~---~v~v~~~~~~t~~~~~~~~i-----~~~~~~~~v~vDa~~~~~~~~vd------ 183 (360)
T d1bjna_ 120 K--VTVDGLRAVKPMREWQLSDN---AAYMHYCPNETIDGIAIDET-----PDFGADVVVAADFSSTILSRPID------ 183 (360)
T ss_dssp E--EEETTEEEECCGGGCCCCSS---CSCEEECSEETTTTEECCCC-----CCCCTTCCEEEECTTTTTSSCCC------
T ss_pred c--ccCCCcchhhhhhhhccCCc---eeEEEecccccccCccccce-----ecccccceeeeeeeccccceeee------
Confidence 3 12223455555555554443 33334467888887665432 34567899999987765544321
Q ss_pred HHhhhcCCeEEEEecccccccccc
Q 023599 246 RMFVADGGECLVAQSYSKTMGLYG 269 (280)
Q Consensus 246 ~~~~~~~~~~i~~~S~SK~~~~~G 269 (280)
... -. +.+.|.+|.++.|+
T Consensus 184 --~~~--~d-v~~~ss~k~~~~~~ 202 (360)
T d1bjna_ 184 --VSR--YG-VIYAGAQKNIGPAG 202 (360)
T ss_dssp --GGG--CS-EEEEETTTTTSSTT
T ss_pred --ecc--ce-eEEEEcccccccCC
Confidence 111 12 46788888887544
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=97.19 E-value=0.00015 Score=61.21 Aligned_cols=151 Identities=7% Similarity=-0.106 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhCCCCccccCCCeEEeecccchhHHHHHHHHHHhhcCCCEEEEeCCCCCC--hHHHHHHcCCeeeEEEe
Q 023599 89 PEFNKLSAKLIFGADSPAIKENRVSTVQCLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGN--HPNFFAAAGLAMKTYHY 166 (280)
Q Consensus 89 ~~lr~~ia~~l~~~~~~~~~~~~i~~v~t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~--~~~~~~~~G~~~~~v~~ 166 (280)
.+.|+.+++++.... ++.|++ ++|++++...++ ...+..++++|++....+.. +...+...+...+....
T Consensus 51 ~~~r~~l~~l~~~~~-----~~~i~~--~~gt~~~~~~~~-~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 122 (360)
T d1w23a_ 51 EQAQNLLRELLQIPN-----DYQILF--LQGGASLQFTML-PMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAST 122 (360)
T ss_dssp HHHHHHHHHHHTCCT-----TEEEEE--ESSHHHHHHHHH-HHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEEC
T ss_pred HHHHHHHHHHhCCCC-----CCEEEE--eCCcHHHHHHHH-HhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecc
Confidence 457788888874321 134444 666655555442 44455677888887654422 23334445555555443
Q ss_pred ecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcccCCCcccCcCCChhHHH
Q 023599 167 YDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDCAYQGFVMNMDADALPVR 246 (280)
Q Consensus 167 ~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 246 (280)
++....+.+.++...... . +... +|-||...+. ++|.++|+++|+++|+|.+..-...+-+
T Consensus 123 --~~~~~~~~~~~~~~~~~~---~-~~~~---~~~tg~~~~~---~~i~~~~~~~g~l~ivDavqs~g~~~id------- 183 (360)
T d1w23a_ 123 --KANSYQSIPDFSEFQLNE---N-DAYL---HITSNNTIYG---TQYQNFPEINHAPLIADMSSDILSRPLK------- 183 (360)
T ss_dssp --GGGTSCSCCCGGGCCCCT---T-EEEE---EEESEETTTT---EECSSCCCCCSSCEEEECTTTTTSSCCC-------
T ss_pred --ccccccchhhhhhccccc---c-ccee---EecCCccccc---eeeeeccccceeeEEeeccccccccccc-------
Confidence 222223333333322211 1 2322 5678887764 4667899999999999999876665421
Q ss_pred HhhhcCCeEEEEeccccccccccc
Q 023599 247 MFVADGGECLVAQSYSKTMGLYGE 270 (280)
Q Consensus 247 ~~~~~~~~~i~~~S~SK~~~~~G~ 270 (280)
+.+. . +.+.+++|..+++|-
T Consensus 184 -~~~~--~-vd~~~~~~~k~~~~~ 203 (360)
T d1w23a_ 184 -VNQF--G-MIYAGAQKNLGPSGV 203 (360)
T ss_dssp -GGGC--S-EEEEETTTTTSCTTC
T ss_pred -cccc--c-ceEEeeccccccCCc
Confidence 1111 2 456788898876653
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=95.32 E-value=0.033 Score=47.99 Aligned_cols=98 Identities=10% Similarity=-0.058 Sum_probs=64.2
Q ss_pred cccchhHHHHHHHHHHhhcCCCEEEEeCCCCCChHHHH----HHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEE
Q 023599 117 CLSGSGSLRIGADFLAKHYYQHTVYLSQPTYGNHPNFF----AAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIV 192 (280)
Q Consensus 117 t~g~~~al~~~~~~~~~~~~Gd~Vli~~P~y~~~~~~~----~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 192 (280)
-.|+++....+..+.. ....++++++.-.++.+..+. +..|++++.++. ++. ..+.++ +. .+...
T Consensus 131 ~~ga~a~~~~~~~~~~-~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~-~~~--~~~~~~----~~---~~~Aa 199 (437)
T d1wyua1 131 YDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGG--RTPLPE----VG---EEVGA 199 (437)
T ss_dssp SSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTT--BCCCCC----CC---TTEEE
T ss_pred hHHHHHHHHHHHHHHh-hhcccccccccccChHHhhhhhhhcccceeeEEeeec-ccc--cchhhh----hc---cceeE
Confidence 5566666666532222 235578999988887665553 467999999987 332 222221 22 34457
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEEcc
Q 023599 193 LLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFFDC 229 (280)
Q Consensus 193 v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~De 229 (280)
+++.+|| -.|.. ++++++++++++.|.+++.|.
T Consensus 200 vmi~~Pn-t~G~~---ed~~~i~~~~h~~G~l~~~~a 232 (437)
T d1wyua1 200 VVVQNPN-FLGAL---EDLGPFAEAAHGAGALFVAVA 232 (437)
T ss_dssp EEEESSC-TTSBC---CCHHHHHHHHHHTTCEEEEEC
T ss_pred EEEcccc-ccccc---cchHHHHHHhhhccceEEeee
Confidence 8888884 56765 357889999999999877664
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=93.30 E-value=0.85 Score=39.17 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=70.4
Q ss_pred EEEEeCCCCCCh-HHHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 023599 139 TVYLSQPTYGNH-PNFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQL 217 (280)
Q Consensus 139 ~Vli~~P~y~~~-~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~ 217 (280)
.+.+..+.+... .......+..++.++. ......|.+.+......+ ...+++.+|++.-+. .++.++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~a~v~v~~p~~~g~~---e~~~~~~~~~ 227 (471)
T d1wyub1 156 RVVLVPDSAHGSNPATASMAGYQVREIPS--GPEGEVDLEALKRELGPH---VAALMLTNPNTLGLF---ERRILEISRL 227 (471)
T ss_dssp CEEEEETTSCTHHHHHHHHTTCEEEEECB--CTTSSBCHHHHHHHCSTT---EEEEEECSSCTTSCC---CTTHHHHHHH
T ss_pred ccccCCcccccceeeeeecccceeecccc--cccccccchhhhhhhhcc---ccceeeccCCCcccc---cchhhhhHHH
Confidence 445555555544 4444466777777776 344567888888766443 347777777655433 2346677888
Q ss_pred HHhCCceeEEcccCCCcccCcCCChhHHHHhhhcCCeEEEEecccccccc----cccccceEEEE
Q 023599 218 MRLKRLLPFFDCAYQGFVMNMDADALPVRMFVADGGECLVAQSYSKTMGL----YGERVGALSVV 278 (280)
Q Consensus 218 ~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~RvG~~v~~ 278 (280)
+++.+..+++|-+........ ....+.+...++ ....+.||. .|--+|++.+.
T Consensus 228 ~h~~g~~~~~~~~~~~~~~~l-------~~p~~~g~div~-vg~~q~~G~P~~~GGP~~G~~a~~ 284 (471)
T d1wyub1 228 CKEAGVQLYYDGANLNAIMGW-------ARPGDMGFDVVH-LNLHKTFTVPHGGGGPGSGPVGVK 284 (471)
T ss_dssp HHHHTCEEEEEGGGGGGTTTT-------CCHHHHTCSEEE-CCTTTTTCCCCTTSCCCCCCEEEC
T ss_pred HHhccccccccccchhhhhhc-------cccCcccccccc-cccccccccccccccccccceeeh
Confidence 888887777776543333211 111123334443 444555543 35566776653
|
| >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-N-acetylhexosaminidase species: Streptomyces plicatus [TaxId: 1922]
Probab=85.24 E-value=0.87 Score=37.51 Aligned_cols=68 Identities=15% Similarity=0.041 Sum_probs=44.7
Q ss_pred HHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeEE
Q 023599 153 FFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPFF 227 (280)
Q Consensus 153 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii~ 227 (280)
.+..+..++..+.+.|...|.+..+.+.++....... .....| |..++++|+++|++.|+++|+-||-
T Consensus 26 ~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~------~~~~~~-~~~yT~~di~~iv~ya~~rgI~viP 93 (356)
T d1jaka1 26 RVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGST------EVGGGP-GGYYTKAEYKEIVRYAASRHLEVVP 93 (356)
T ss_dssp HHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSC------CTTSSC-CCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCeEEEEEEecCCCcceeecCCchhhhccCcc------ccCCCC-CCccCHHHHHHHHHHHHHcCCeEee
Confidence 3445667788888866666777666665543322110 112223 5579999999999999999987763
|
| >d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.00 E-value=0.66 Score=38.37 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=44.0
Q ss_pred HHHHHcCCeeeEEEeecCCCCCcCHHHHHHHHhcCCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHhCCceeE
Q 023599 152 NFFAAAGLAMKTYHYYDPKTNGLDFQGMLQDLGAAPSGAIVLLQASGHNPTGIDPTAQQWEQIRQLMRLKRLLPF 226 (280)
Q Consensus 152 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~~~p~NPTG~~~~~~~l~~i~~~~~~~~~~ii 226 (280)
..+..+.+++..+.+.|+.+|.+..+.+.++..... -+|.+..++.+|+++|++.|+++|+-||
T Consensus 25 d~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~ga-----------~~~~~~~yT~~d~~elv~yA~~rgI~vI 88 (362)
T d2gjxa1 25 DVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGS-----------YNPVTHIYTAQDVKEVIEYARLRGIRVL 88 (362)
T ss_dssp HHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHS-----------SCTTTSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCcEEEEEEEcCCCceeccCCCchhhhcCC-----------cCCCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 334456778888888666666665544433322111 2466778999999999999999998777
|