Citrus Sinensis ID: 023671

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEcccccccEEEcccccccccEEEEcccccHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEFSSEANQRIARISahlyppnlqnscLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYdvvntpgvtadishmdtgavvrgflgqpqlenaltgmdlviipagvprkpgmtrddlfnINAGIVRTLCEGIakccpnatvnlisnpvnstvPIAAEVFkkagtydpkkllGVTMLDVVRANTFVAEVlgldprdvdvpvvgghagvtilpllsqvkppcsftqEETEYLTNRIQNGGTEVVeakagagsaTLSMRLNLRMHASVG
Flexible Loop (DISEMBL)
MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpVVGGHAGVTilpllsqvkpPCSFTQEETEYLTNRIQNGGTEVVEAkagagsatlsmrlNLRMHASVG
Low Complexity Region (SEG)
MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpvvggHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Disordered region (IsUnstruct)
************RISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQ*******************************
Disordered Region (DISOPRED)
*******************************************VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Disordered Region (DISEMBL)
*********RIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Disordered Region (DISPRO)
**************************************AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG*************MH*S**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.942	0.738	0.894	1e-135
P46488	356	Malate dehydrogenase, gly	N/A	no	0.942	0.738	0.894	1e-134
O82399	354	Probable malate dehydroge	yes	no	0.942	0.742	0.869	1e-131
P37228	353	Malate dehydrogenase, gly	no	no	0.960	0.759	0.843	1e-131
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.960	0.757	0.855	1e-131
Q42972	356	Malate dehydrogenase, gly	yes	no	0.960	0.752	0.852	1e-129
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	0.960	0.748	0.838	1e-128
Q43743	358	Malate dehydrogenase 1, g	N/A	no	0.960	0.748	0.838	1e-127
Q9SN86	403	Malate dehydrogenase, chl	no	no	0.820	0.568	0.685	3e-88
P17783	347	Malate dehydrogenase, mit	N/A	no	0.810	0.651	0.694	1e-85

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/266 (89%), Positives = 248/266 (93%), Gaps = 3/266 (1%)

Query: 6   EANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMK 62
           + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK
Sbjct: 6   DVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMK 65

Query: 63  INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 122
           +NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRK
Sbjct: 66  MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRK 125

Query: 123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 182
           PGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+
Sbjct: 126 PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKR 185

Query: 183 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY 242
           LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  Y
Sbjct: 186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISY 245

Query: 243 LTNRIQNGGTEVVEAKAGAGSATLSM 268
           LT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 246 LTDRIQNGGTEVVEAKAGAGSATLSM 271

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  479 bits (1233), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/266 (89%), Positives = 248/266 (93%), Gaps = 3/266 (1%)

Query: 6   EANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMK 62
           + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK
Sbjct: 6   DVNQRIARISAHLHPPKYQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMK 65

Query: 63  INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 122
           +NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPAGVPRK
Sbjct: 66  MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRK 125

Query: 123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 182
           PGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+
Sbjct: 126 PGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKR 185

Query: 183 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY 242
           LLGVTMLDVVRANTFVAEVLGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQEE  Y
Sbjct: 186 LLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINY 245

Query: 243 LTNRIQNGGTEVVEAKAGAGSATLSM 268
           LT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 246 LTDRIQNGGTEVVEAKAGAGSATLSM 271

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  469 bits (1207), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/268 (86%), Positives = 245/268 (91%), Gaps = 5/268 (1%)

Query: 6   EANQRIARISAHLYPPNLQN-----SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 60
           + NQRIARISAHL PPNL N     S L +  CRAKGG+ GFKVAILGAAGGIGQPLAML
Sbjct: 2   DPNQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAML 61

Query: 61  MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120
           MK+NPLVSVLHLYDV N PGVTADISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVP 121

Query: 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
           RKPGMTRDDLFNINAGIVRTL E IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DP
Sbjct: 122 RKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDP 181

Query: 181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
           KKL+GVTMLDVVRANTFVAEV+ LDPR+V+VPVVGGHAGVTILPLLSQVKPPCSFTQ+E 
Sbjct: 182 KKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEI 241

Query: 241 EYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EYLT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 242 EYLTDRIQNGGTEVVEAKAGAGSATLSM 269

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/268 (84%), Positives = 247/268 (92%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 60
           ME +S A+ RI+RI+ HL P    + CL+++ CRAKGG +GFKVAILGAAGGIGQPLAML
Sbjct: 1   MEANSGASDRISRIAGHLRPQREDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPLAML 60

Query: 61  MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120
           MK+NPLVS+LHLYDVVNTPGVT+DISHMDTGAVVRGFLGQ QLE+AL GMDLVIIPAGVP
Sbjct: 61  MKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVP 120

Query: 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
           RKPGMTRDDLFNINAGIV+TLCE IAKCCP A VN+ISNPVNSTVPIAAEVFK+AGTYDP
Sbjct: 121 RKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGTYDP 180

Query: 181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
           K+LLGVTMLDVVRANTFVAEVLG+DPRDVDVPVVGGHAG+TILPLLSQ+KPPCSFT +E 
Sbjct: 181 KRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTPKEI 240

Query: 241 EYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EYLT RIQNGG EVVEAKAGAGSATLSM
Sbjct: 241 EYLTGRIQNGGPEVVEAKAGAGSATLSM 268

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  466 bits (1199), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/269 (85%), Positives = 245/269 (91%), Gaps = 1/269 (0%)

Query: 1   MEFSSEANQRIARISAHLYPP-NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 59
           MEF  +ANQRIARISAHL P    +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++
Sbjct: 1   MEFRGDANQRIARISAHLTPQMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSL 60

Query: 60  LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119
           LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAG+
Sbjct: 61  LMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGI 120

Query: 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179
           PRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 121 PRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query: 180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEE 239
           PKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT +E
Sbjct: 181 PKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQE 240

Query: 240 TEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
            EYLTNRIQNGGTEVVEAKAGAGSATLSM
Sbjct: 241 IEYLTNRIQNGGTEVVEAKAGAGSATLSM 269

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/271 (85%), Positives = 248/271 (91%), Gaps = 3/271 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           ME ++ A +R+ R+++HL PP  Q   +  LR + CRAKG A GFKVAILGA+GGIGQPL
Sbjct: 1   MEDAAAAARRMERLASHLRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           A+LMK+NPLVSVLHLYDVVNTPGVTADISHM+TGAVVRGFLGQPQLENALTGMDLVIIPA
Sbjct: 61  ALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA VN+ISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVT LDVVRANTFVAEVLGLDPRDV+VPV+GGHAGVTILPLLSQV PPCSFT 
Sbjct: 181 YDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTS 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EE  YLT RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 241 EEISYLTTRIQNGGTEVVEAKAGAGSATLSM 271

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  458 bits (1178), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/273 (83%), Positives = 244/273 (89%), Gaps = 5/273 (1%)

Query: 1   MEFSSEANQRIARISAHLYP---PNLQ--NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQ 55
           MEF  +AN+RIA ISAHL P   P ++  NS + +  CRAKGG  GFKVAILGAAGGIGQ
Sbjct: 1   MEFRGDANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQ 60

Query: 56  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115
            L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVII
Sbjct: 61  SLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVII 120

Query: 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 175
           PAGVPRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTV IAAEVFKKA
Sbjct: 121 PAGVPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKA 180

Query: 176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSF 235
           GTYDPKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SF
Sbjct: 181 GTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSF 240

Query: 236 TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           T  E EYLTNRIQNGGTEVVEAKAGAGSATLSM
Sbjct: 241 TPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSM 273

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  456 bits (1172), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/273 (83%), Positives = 242/273 (88%), Gaps = 5/273 (1%)

Query: 1   MEFSSEANQRIARISAHLYP---PNLQ--NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQ 55
           MEF  +A +RIA ISAHL P   P ++  NS +    CRAKGG  GFKVAILGAAGGIGQ
Sbjct: 1   MEFRGDAYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQ 60

Query: 56  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115
            L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVII
Sbjct: 61  SLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVII 120

Query: 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 175
           PAGVPRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTV IAAEVFKKA
Sbjct: 121 PAGVPRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKA 180

Query: 176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSF 235
           GTYDPKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SF
Sbjct: 181 GTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSF 240

Query: 236 TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           T  E EYLTNRIQNGGTEVVEAKAGAGSATLSM
Sbjct: 241 TPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSM 273

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9SN86|MDHP_ARATH Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1

 Score =  325 bits (832), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 188/229 (82%)

Query: 40  AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG 99
           A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G
Sbjct: 81  ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTG 140

Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
             +L + L  +++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A+ CPNA +++ISN
Sbjct: 141 PSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISN 200

Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 219
           PVNSTVPIAAEV KK G YDPKKL GVT LDVVRANTFV++   L   DVDVPV+GGHAG
Sbjct: 201 PVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAG 260

Query: 220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           +TILPLLS+ KP  +FT EE + LT RIQN GTEVV+AKAGAGSATLSM
Sbjct: 261 ITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSM 309

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  316 bits (810), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 182/226 (80%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G+ Q
Sbjct: 36  KVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQ 95

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++LC  IAK CPNA +N+ISNPVN
Sbjct: 96  LGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISNPVN 155

Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
           STVPIAAEVFKKAGTYD KKL GVT LDVVRA TF A    +   +V+VPV+GGHAG+TI
Sbjct: 156 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGITI 215

Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSM
Sbjct: 216 LPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSM 261

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
255562058	356	malate dehydrogenase, putative [Ricinus	0.960	0.752	0.900	1e-138
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	0.960	0.752	0.907	1e-138
118489009	354	unknown [Populus trichocarpa x Populus d	0.953	0.751	0.892	1e-134
224103817	354	predicted protein [Populus trichocarpa]	0.953	0.751	0.888	1e-134
359496625	356	PREDICTED: malate dehydrogenase, glyoxys	0.960	0.752	0.889	1e-134
158712040	354	malate dehydrogenase [Perilla frutescens	0.942	0.742	0.899	1e-134
357476083	356	Malate dehydrogenase [Medicago truncatul	0.960	0.752	0.878	1e-133
224056321	356	predicted protein [Populus trichocarpa]	0.960	0.752	0.896	1e-133
60593475	362	Chain A, Mature And Translocatable Forms	0.942	0.726	0.894	1e-133
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.942	0.738	0.894	1e-133

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/271 (90%), Positives = 257/271 (94%), Gaps = 3/271 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+ S+EA QRIARISAHL+PPN Q   +S L++A CRAKGG+ GFKVAILGAAGGIGQPL
Sbjct: 1   MDSSAEAAQRIARISAHLHPPNFQMEGSSALKRADCRAKGGSPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPPCSFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTS 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EETEYLT RIQ+GGTEVV+AKAGAGSATLSM
Sbjct: 241 EETEYLTKRIQDGGTEVVQAKAGAGSATLSM 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/271 (90%), Positives = 258/271 (95%), Gaps = 3/271 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+ ++EANQRIAR+SAHLYP   Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPTAEANQRIARLSAHLYPSVRQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGH+GVTILPLLSQVKPPCSFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTP 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EET+YLTNRIQNGGTEVVEAKAGAGSATLSM
Sbjct: 241 EETQYLTNRIQNGGTEVVEAKAGAGSATLSM 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/269 (89%), Positives = 251/269 (93%), Gaps = 3/269 (1%)

Query: 3   FSSEANQRIARISAHLYPPN--LQNSC-LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 59
             S ANQRIAR+SAHL PPN  ++ SC L++  CRAKGGA GFKVAILGAAGGIGQPLAM
Sbjct: 1   MESVANQRIARVSAHLQPPNSQMEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAM 60

Query: 60  LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119
           LMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV
Sbjct: 61  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 120

Query: 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179
           PRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 121 PRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query: 180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEE 239
           PK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EE
Sbjct: 181 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEE 240

Query: 240 TEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           TEYLT RIQ+GGTEVV+AKAGAGSATLSM
Sbjct: 241 TEYLTKRIQDGGTEVVQAKAGAGSATLSM 269

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103817|ref|XP_002313205.1| predicted protein [Populus trichocarpa] gi|118487242|gb|ABK95449.1| unknown [Populus trichocarpa] gi|222849613|gb|EEE87160.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/269 (88%), Positives = 251/269 (93%), Gaps = 3/269 (1%)

Query: 3   FSSEANQRIARISAHLYPPN--LQNSC-LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 59
             S ANQRIAR+SAHL PPN  ++ SC L++  CRAKGGA GFKVAILGAAGGIGQPLAM
Sbjct: 1   MESVANQRIARVSAHLQPPNSQMEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAM 60

Query: 60  LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119
           LMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGV
Sbjct: 61  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGV 120

Query: 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179
           PRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 121 PRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query: 180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEE 239
           PK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EE
Sbjct: 181 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEE 240

Query: 240 TEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           TEYLT RIQ+GGTEVV+AKAGAGSATLSM
Sbjct: 241 TEYLTKRIQDGGTEVVQAKAGAGSATLSM 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496625|ref|XP_002263670.2| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|297739396|emb|CBI29427.3| unnamed protein product [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/271 (88%), Positives = 253/271 (93%), Gaps = 3/271 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M  +S+ANQRIARISAHL P N Q   +S L +  CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MHPTSDANQRIARISAHLQPSNFQMGESSGLSRENCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVNTPGVT+DISHMDTGAVVRGFLGQ QLE+ALTGMDLVIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALTGMDLVIIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIV+TLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           +DPK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPPCSFT 
Sbjct: 181 FDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTP 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EE +YLT RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 241 EEIDYLTARIQNGGTEVVEAKAGAGSATLSM 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158712040|gb|ABW79813.1| malate dehydrogenase [Perilla frutescens]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/268 (89%), Positives = 250/268 (93%), Gaps = 5/268 (1%)

Query: 6   EANQRIARISAHLYPPNLQ-----NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 60
           EANQRIARISAHL+P N Q     +  LR A CRAKGGA GFKVAILGAAGGIGQPL+ML
Sbjct: 2   EANQRIARISAHLHPSNPQMGSEHHPILRAADCRAKGGAPGFKVAILGAAGGIGQPLSML 61

Query: 61  MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120
           MK+NPLVSVLHLYDVVN PGVTAD+SHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVP 121

Query: 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
           RKPGMTRDDLFNINAGIVRTLCEGIAK CPNA VNLISNPVNSTVPIAAEVFKKAGTYDP
Sbjct: 122 RKPGMTRDDLFNINAGIVRTLCEGIAKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
           KKLLGVTMLDVVRANTFVAEVLGLDPR+V VPVVGGHAGVTILPLLSQVKPPCSFT EET
Sbjct: 182 KKLLGVTMLDVVRANTFVAEVLGLDPREVSVPVVGGHAGVTILPLLSQVKPPCSFTPEET 241

Query: 241 EYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EYLT RIQ+GGTEVV+AKAGAGSATLSM
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGSATLSM 269

Source: Perilla frutescens

Species: Perilla frutescens

Genus: Perilla

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476083|ref|XP_003608327.1| Malate dehydrogenase [Medicago truncatula] gi|355509382|gb|AES90524.1| Malate dehydrogenase [Medicago truncatula]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 252/271 (92%), Gaps = 3/271 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           ME  + ANQRIARISAHL+P N Q   +  + +A CRAKGGA GFKVA+LGAAGGIGQ L
Sbjct: 1   MEAHAGANQRIARISAHLHPSNFQEGGDVVIDRANCRAKGGAPGFKVAVLGAAGGIGQSL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           ++L+K+NPLVSVLHLYDVVNTPGVTAD+SHMDTGAVVRGFLGQPQLENALTGMDLV+IPA
Sbjct: 61  SLLLKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLENALTGMDLVVIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLF INAGIVRTLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVT LDVVRANTFVAEVLG+DPRDVDVPVVGGHAGVTILPLLSQVKPP SFT 
Sbjct: 181 YDPKRLLGVTALDVVRANTFVAEVLGVDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTA 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EETEYLTNRIQNGGTEVVEAKAGAGSATLSM
Sbjct: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSM 271

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056321|ref|XP_002298801.1| predicted protein [Populus trichocarpa] gi|222846059|gb|EEE83606.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/271 (89%), Positives = 252/271 (92%), Gaps = 3/271 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQ--NSC-LRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           ME   EA+QRIARISAHL PPN Q   SC L++A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MESIREASQRIARISAHLQPPNSQTEESCVLKRADCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NP VSVLHLYDVVNTPGVTADI HMDTGAVVRGFLGQPQLENALTGMDLVIIPA
Sbjct: 61  AMLMKMNPSVSVLHLYDVVNTPGVTADIGHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120

Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLFNINAGIV TLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVITLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAEVLGL P++VDVPVVGGHAGVTILPLLSQVKPP SFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLHPKEVDVPVVGGHAGVTILPLLSQVKPPSSFTP 240

Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EETEYLT RIQ+GGTEVV+AKAGAGSATLSM
Sbjct: 241 EETEYLTKRIQDGGTEVVQAKAGAGSATLSM 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/266 (89%), Positives = 248/266 (93%), Gaps = 3/266 (1%)

Query: 6   EANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMK 62
           + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK
Sbjct: 6   DVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMK 65

Query: 63  INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 122
           +NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRK
Sbjct: 66  MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRK 125

Query: 123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 182
           PGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+
Sbjct: 126 PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKR 185

Query: 183 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY 242
           LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  Y
Sbjct: 186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISY 245

Query: 243 LTNRIQNGGTEVVEAKAGAGSATLSM 268
           LT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 246 LTDRIQNGGTEVVEAKAGAGSATLSM 271

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/266 (89%), Positives = 248/266 (93%), Gaps = 3/266 (1%)

Query: 6   EANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMK 62
           + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK
Sbjct: 6   DVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMK 65

Query: 63  INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 122
           +NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRK
Sbjct: 66  MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRK 125

Query: 123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK 182
           PGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+
Sbjct: 126 PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKR 185

Query: 183 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY 242
           LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  Y
Sbjct: 186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISY 245

Query: 243 LTNRIQNGGTEVVEAKAGAGSATLSM 268
           LT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 246 LTDRIQNGGTEVVEAKAGAGSATLSM 271

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.942	0.742	0.824	1.1e-110
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.960	0.738	0.799	9e-109
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.820	0.568	0.646	1.5e-74
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.838	0.686	0.649	5.1e-74
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.810	0.662	0.659	7.5e-73
WB|WBGene00003162	341	mdh-2 [Caenorhabditis elegans	0.874	0.715	0.601	7e-70
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.845	0.700	0.600	1.1e-69
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.810	0.668	0.610	1e-68
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.810	0.668	0.610	1.3e-68
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.810	0.668	0.610	1.3e-68

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 221/268 (82%), Positives = 230/268 (85%)

Query:     6 EANQRIARISAHLYPPNLQN-----SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 60
             + NQRIARISAHL PPNL N     S L +  CRAKGG+ GFKVAILGAAGGIGQPLAML
Sbjct:     2 DPNQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAML 61

Query:    61 MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120
             MK+NPLVSVLHLYDV N PGVTADISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVP
Sbjct:    62 MKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVP 121

Query:   121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
             RKPGMTRDDLFNINAGIVRTL E IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DP
Sbjct:   122 RKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDP 181

Query:   181 KKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEET 240
             KKL+GVTMLDVVRANTFVAE                HAGVTILPLLSQVKPPCSFTQ+E 
Sbjct:   182 KKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEI 241

Query:   241 EYLTNRIQNGGTEVVEAKAGAGSATLSM 268
             EYLT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct:   242 EYLTDRIQNGGTEVVEAKAGAGSATLSM 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 215/269 (79%), Positives = 229/269 (85%)

Query:     1 MEFSSEANQRIARISAHLYPP-NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 59
             MEF  +ANQRIARISAHL P    +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++
Sbjct:     1 MEFRGDANQRIARISAHLTPQMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSL 60

Query:    60 LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119
             LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAG+
Sbjct:    61 LMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGI 120

Query:   120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179
             PRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct:   121 PRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query:   180 PKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEE 239
             PKKLLGVT LDV RANTFVAE                HAGVTILPLLSQVKPP SFT +E
Sbjct:   181 PKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQE 240

Query:   240 TEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
              EYLTNRIQNGGTEVVEAKAGAGSATLSM
Sbjct:   241 IEYLTNRIQNGGTEVVEAKAGAGSATLSM 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 148/229 (64%), Positives = 178/229 (77%)

Query:    40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG 99
             A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G
Sbjct:    81 ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTG 140

Query:   100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
               +L + L  +++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A+ CPNA +++ISN
Sbjct:   141 PSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISN 200

Query:   160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
             PVNSTVPIAAEV KK G YDPKKL GVT LDVVRANTFV++                HAG
Sbjct:   201 PVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAG 260

Query:   220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
             +TILPLLS+ KP  +FT EE + LT RIQN GTEVV+AKAGAGSATLSM
Sbjct:   261 ITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSM 309

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 152/234 (64%), Positives = 171/234 (73%)

Query:    35 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV 94
             + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V
Sbjct:    23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEV 82

Query:    95 RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 154
              G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK CP+A +
Sbjct:    83 VGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALI 142

Query:   155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXX 214
             N+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVRA TF A               
Sbjct:   143 NMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVI 202

Query:   215 XXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
               HAGVTILPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSM
Sbjct:   203 GGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSM 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 149/226 (65%), Positives = 167/226 (73%)

Query:    43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
             KV ILGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   
Sbjct:    31 KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDD 90

Query:   103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ L   IAK CP A VN+ISNPVN
Sbjct:    91 LGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVN 150

Query:   163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
             STVPIAAE+FKKAGTYD KKL GVT LDVVRA TF A                 HAG+TI
Sbjct:   151 STVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITI 210

Query:   223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
             LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSM
Sbjct:   211 LPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSM 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

WB|WBGene00003162 mdh-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 148/246 (60%), Positives = 174/246 (70%)

Query:    25 NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD 84
             NS LR    R    A   KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTPGV AD
Sbjct:    14 NSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAAD 71

Query:    85 ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG 144
             +SH+D+ A V    G  +L  A+   D+++IPAGVPRKPGMTRDDLFN NAGIVR L   
Sbjct:    72 LSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAV 131

Query:   145 IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXX 204
             IAK  P A + +I+NPVNSTVPIA+EV KKAG YDPK++ GVT LDVVR+  FV+E    
Sbjct:   132 IAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGH 191

Query:   205 XXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
                         HAG+TI+PLLSQVKP   F++EE   LT RIQ+ GTEVV AKAGAGSA
Sbjct:   192 DASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSA 251

Query:   265 TLSMRL 270
             TLSM L
Sbjct:   252 TLSMAL 257

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;ISS

GO:0006108 "malate metabolic process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 143/238 (60%), Positives = 171/238 (71%)

Query:    33 CRAKGGAA--GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 90
             CR    +A    KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    91 GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 150
              A V+GFLG  QL   L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   151 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXX 210
              A + +ISNPVNST+PI +EVFKK G Y+P ++ GVT LD+VRANTFVAE          
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   211 XXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
                   HAG TI+PL+SQ  P   F Q++ E LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSM 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 138/226 (61%), Positives = 166/226 (73%)

Query:    43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
             KVA+LGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
             ST+PIA EVFKK G YDP K+ GVT LD+VRANTF+AE                HAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
             +PL+SQ  P     Q++   +T RIQ  GTEVV+AKAGAGSATLSM
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSM 251

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 138/226 (61%), Positives = 167/226 (73%)

Query:    43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 251

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 138/226 (61%), Positives = 167/226 (73%)

Query:    43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 251

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4WF48	MDH_ENT38	1, ., 1, ., 1, ., 3, 7	0.6200	0.8064	0.7211	yes	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8388	0.9605	0.7486	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.6548	0.8100	0.6686	yes	no
Q1CEJ3	MDH_YERPN	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
C4ZSX4	MDH_ECOBW	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
A9R584	MDH_YERPG	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.8523	0.9605	0.7528	yes	no
Q1CBY7	MDH_YERPA	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6592	0.8100	0.6686	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.7035	0.8100	0.6512	N/A	no
Q31WA4	MDH_SHIBS	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
A7FMU2	MDH_YERP3	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
A8A545	MDH_ECOHS	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
Q1R6A3	MDH_ECOUT	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.8947	0.9426	0.7387	N/A	no
P61892	MDH_YERPE	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
A4TRK3	MDH_YERPP	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.6504	0.8100	0.6686	yes	no
A1AGC9	MDH_ECOK1	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8388	0.9605	0.7486	N/A	no
B7N0M1	MDH_ECO81	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
B2U1U9	MDH_SHIB3	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
P0C7R5	MDH_YERPS	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.6341	0.8745	0.7155	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6548	0.8100	0.6686	yes	no
B1JMK1	MDH_YERPY	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.6592	0.8100	0.6686	yes	no
C6DKH1	MDH_PECCP	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
B1XHK9	MDH_ECODH	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.8947	0.9426	0.7387	N/A	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.6548	0.8100	0.6686	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8694	0.9426	0.7429	yes	no
P61890	MDH_ECOL6	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
B2K2N5	MDH_YERPB	1, ., 1, ., 1, ., 3, 7	0.6288	0.8064	0.7211	yes	no
A1JIV0	MDH_YERE8	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7234	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.6244	0.8064	0.7211	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
3rd Layer	1.1.1.37	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-162
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-124
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-118
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-107
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	7e-66
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	1e-54
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	1e-40
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	3e-40
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	6e-37
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	1e-30
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	1e-29
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	9e-29
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	7e-28
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	4e-24
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	2e-21
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	4e-18
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	8e-18
cd00704	323	cd00704, MDH, Malate dehydrogenase	2e-17
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	1e-15
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	6e-15
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	8e-15
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-12
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	4e-12
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	3e-11
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	7e-11
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	2e-10
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	2e-09
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	5e-08
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	2e-07
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	4e-05
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	0.001

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  511 bits (1319), Expect = 0.0
 Identities = 194/236 (82%), Positives = 207/236 (87%)

Query: 33  CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA 92
           CRAKGGA GFKVA+LGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV AD+SH++T A
Sbjct: 10  CRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPA 69

Query: 93  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152
            VRGFLG  QL +AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+TLCE +AK CPNA
Sbjct: 70  QVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNA 129

Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP 212
            VN+ISNPVNSTVPIAAEV KKAG YDPKKL GVT LDVVRANTFVAE  GLDP DVDVP
Sbjct: 130 LVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVP 189

Query: 213 VVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           VVGGHAG+TILPLLSQ  P  SFT EE E LT RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 190 VVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSM 245

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  451 bits (1164), Expect = e-162
 Identities = 168/227 (74%), Positives = 194/227 (85%)

Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 101
            KVA+LGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG  
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIVR L   +AK CP A + +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 162 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 221
           NSTVPIAAEV KKAG YDPK+L GVT LDVVRANTFVAE+LGLDP  V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 222 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           ILPLLSQ +PP +F QEE E LT+RIQ GG EVV+AKAGAGSATLSM
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSM 227

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  357 bits (918), Expect = e-124
 Identities = 149/226 (65%), Positives = 181/226 (80%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G+  
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           LENAL G D+V+IPAGVPRKPGMTRDDLFN+NAGIV+ L   +A+ CP A + +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
           STVPIAAEV KK G YDP KL GVT LD+VRANTFVAE+ G DP +V+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           +PL+SQ      FT+++ E L +RIQN GTEVV+AKAGAGSATLSM
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSM 226

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  341 bits (876), Expect = e-118
 Identities = 144/228 (63%), Positives = 171/228 (75%), Gaps = 4/228 (1%)

Query: 43  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 100
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L E +AK CP A + +I+NP
Sbjct: 62  -DPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 220
           VN+TV IAAEV KKAG YD  KL GVT LDV+R+ TFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 221 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  314 bits (807), Expect = e-107
 Identities = 150/227 (66%), Positives = 174/227 (76%), Gaps = 2/227 (0%)

Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 101
           FKVA+LGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+    
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161
             E AL G DLV+I AGVPRKPGMTRDDLFN NA IVR L   +A   P A V ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 162 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 221
           NSTVPIAAE  KKAG YDP+KL GVT LDVVRA  FVAE LG++P DV+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 222 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           I+PLLSQ     S  +E+ E +T+R+Q GG EVV+AK GAGSATLSM
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSM 233

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  207 bits (530), Expect = 7e-66
 Identities = 92/236 (38%), Positives = 127/236 (53%), Gaps = 17/236 (7%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KVA++GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                 L G D+V+I AGVPRKPGMTR DL   NA IV+ + + IAK  P+A V +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 220
           V+    IA +    +G    + +   T+LD  R  TF+AE LG+ P+DV   V+G H G 
Sbjct: 121 VDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-GD 176

Query: 221 TILPLLSQV----KPPCSF----TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           T++PL SQ     KP        T+E+ E L  R++N G E++EAK GAG      
Sbjct: 177 TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  172 bits (439), Expect = 1e-54
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 100
           KVA++GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL   D+V+I AGVPRKPGMTR DL N NAGI + +   IAK  P+A V ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           V+    IA +V   +G    + +  
Sbjct: 121 VDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  142 bits (360), Expect = 1e-40
 Identities = 83/233 (35%), Positives = 130/233 (55%), Gaps = 22/233 (9%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K++I+GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF  +
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N    + G D+V+I AGVPRKPGM+RDDL  INA I++ + EGI K  P+A V ++
Sbjct: 59  ITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV 118

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NPV++   +A     K   +   +++G+  +LD  R  TF+AE L +  +DV   V+GG
Sbjct: 119 TNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGG 174

Query: 217 HAGVTILPLLSQ-----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G +++PL+       +      ++E+ + +  R + GG E+V      GSA
Sbjct: 175 H-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSA 225

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  141 bits (357), Expect = 3e-40
 Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 24/233 (10%)

Query: 44  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTGAVVRGF 97
           ++I+GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       +   V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 98  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
                +  +    D+V+I AG+PRKPGM+RDDL   NA IV+ + E I K  PNA V ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++        V  KA  +   +++G+  +LD  R   F+AE LG+  +DV   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 217 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G T++PL         P     T+EE + +  R +NGG E+V      GSA
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSA 221

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  131 bits (331), Expect = 6e-37
 Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 44  VAILGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG 99
           +A++GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
                 A    D+VII AGV RKPGM R DL   N  IV+ + + I K  P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 219
           PV+    I   +  +      +K++G+  LD +R    +AE LG+DP DV V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 220 VTILPLLSQVKP 231
            + +P  S V+ 
Sbjct: 177 -SQVPDWSTVRI 187

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  116 bits (292), Expect = 1e-30
 Identities = 78/239 (32%), Positives = 120/239 (50%), Gaps = 23/239 (9%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTGAVVRGFLG 99
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
               E  +   D+V+I AGV RK  MTR+DL  IN  I++++ E + K CPNA V  ++N
Sbjct: 65  TNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGHA 218
           P++       +VF++       K+ G+  +LD  R    +AE LG+ P DV   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 219 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 267
           G  ++PL         P   F      T++E   +  + +N G E+V+     GSA  +
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFA 236

Length = 319

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  109 bits (275), Expect = 1e-29
 Identities = 47/92 (51%), Positives = 56/92 (60%), Gaps = 12/92 (13%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQVKPPCSFT 236
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK     T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 237 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
             E E L  R+QN G EV+EAK  AGS T SM
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSM 90

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  110 bits (278), Expect = 9e-29
 Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 25/235 (10%)

Query: 44  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRGF 97
           + I+GA G +G  +A  +    L S L L DV      G   D+SH      TG +VRG 
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG- 58

Query: 98  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
                        D+V+I AG PRKPG TR DL N NA I+R++   + K  P+A + ++
Sbjct: 59  ----GDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV 114

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           SNPV+    I   V +K       +++G  T+LD  R  + +AE L +DP+ V   V+G 
Sbjct: 115 SNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE 170

Query: 217 HAGVTILPLLSQVK-------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G + +   S              FT+ + E +   ++  G E++  K      
Sbjct: 171 H-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYG 224

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  109 bits (273), Expect = 7e-28
 Identities = 86/241 (35%), Positives = 133/241 (55%), Gaps = 28/241 (11%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVR-GFLG 99
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATV 154
               E+ + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CPNA V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPV 213
            +I+NP++  V    ++ ++       K+ G+  +LD  R  T++AE LG++PRDV   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 214 VGGHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGS 263
           +G H G  ++PL   V     P   F      TQEE + +  R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 264 A 264
           A
Sbjct: 239 A 239

Length = 321

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score = 98.6 bits (246), Expect = 4e-24
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 43/243 (17%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 85
           KV+I+GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 86  SHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI 145
                 + V              G D+VII AGVPRK GM+R DL   NA IV+   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 146 AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGL 204
           A+  P+  + +++NPV+     A    K++G +D  ++ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 205 DPRDVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEA 257
              +V   ++G H G +++PL+S        +K    +   + E +   ++N G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 258 KAG 260
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 91.5 bits (227), Expect = 2e-21
 Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 30/237 (12%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----L 98
           K++++GA G +G   A  +    L  ++ L DVV        +   +   V  GF     
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPV-GGFDTKVT 59

Query: 99  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158
           G     +     D+V+I AG+PRKPGM+R+DL ++NAGIVR +   I +  PN  + ++S
Sbjct: 60  GTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118

Query: 159 NPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGH 217
           NP+++   +A +       +  ++++G   +LD  R  TF+A  LG+  +DV   V+GGH
Sbjct: 119 NPLDAMTYVAWQK----SGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGH 174

Query: 218 AGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
            G  ++PL          ++ +        E    +  R + GG E+V      GSA
Sbjct: 175 -GDAMVPLVRYSTVAGIPVADLISA-----ERIAEIVERTRKGGGEIVNL-LKQGSA 224

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 81.7 bits (203), Expect = 4e-18
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 16/160 (10%)

Query: 110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 169
            D+V+I AG P+KPG TR DL   NA I++++   I     +    + SNPV+    +  
Sbjct: 69  ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VIT 124

Query: 170 EVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH--------AGV 220
            V +K       +++G  T LD  R    +AE L +DPR V   V+G H        + V
Sbjct: 125 YVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTV 184

Query: 221 TIL--PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
           T+   PLL  +K     ++ + + +   ++  G E++  K
Sbjct: 185 TVGGKPLLDLLKEGK-LSELDLDEIEEDVRKAGYEIINGK 223

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 81.1 bits (201), Expect = 8e-18
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 17/164 (10%)

Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
               DLV+I AG P+KPG TR +L   N  I++++   + K   +    + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPL 225
           I   V  K   +   +++G  T+LD  R    +AE LG+DP+ V   ++G H G + +P+
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEH-GDSEVPV 176

Query: 226 LSQVK----PPCSF---TQEETEYLTNRI----QNGGTEVVEAK 258
            S       P   +      ET+     I    ++   E++  K
Sbjct: 177 WSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK 220

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 68/258 (26%), Positives = 102/258 (39%), Gaps = 48/258 (18%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-- 93
            V I GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 94  -------VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA 146
                  ++G +     E A   +D+ I+    PRKPGM R DL   NA I +   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 147 KCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLD 205
           K   P   V ++ NP N+   IA    K A    PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 206 PRDV-DVPVVGGHAGVTILPLLSQ-------------VKPPCSFTQEETEYLTNRIQNGG 251
             DV +V + G H+  T +P LS                    +  +E       +Q  G
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDE---FVKTVQKRG 226

Query: 252 TEVVEAK--AGAGSATLS 267
             +++ +  + A SA  +
Sbjct: 227 AAIIKKRGASSAASAAKA 244

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 16/181 (8%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTGAVVRGFL 98
           KVAI+GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 99  GQPQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
           G     + A    D+V+I AG  +KPG TR DL   N  I + +   I K  P+A + ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NPV+    +   V  K     P +++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 217 H 217
           H
Sbjct: 172 H 172

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 28/242 (11%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 91
           +VA+ GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 92  -AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 149
             ++ G +     E A   +D  ++    PRKPGM R DL + N  I +   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 150 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 209
            +  V ++ NP N+   IA+   K A    PK    +T LD  RA   +A   G+   DV
Sbjct: 121 KDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 210 DVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGAG 262
              ++ G+   T +P  +       P     ++ ++L       +Q  G  V+EA+ GA 
Sbjct: 178 KNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR-GAS 236

Query: 263 SA 264
           SA
Sbjct: 237 SA 238

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 106 ALTGMDLVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 163
                D+++I AG    PG T  R DL   NA I+R +   I K    A + LI+NP++ 
Sbjct: 65  DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDI 124

Query: 164 TVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
            V IAA  F     Y   K++G  TMLD  R    VA+  G+DP++V   V+G H G   
Sbjct: 125 AVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSHA 179

Query: 223 LPLLSQV 229
            P+ S V
Sbjct: 180 FPVWSLV 186

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 62/239 (25%), Positives = 96/239 (40%), Gaps = 29/239 (12%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTG-A 92
           +V + GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 93  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPN 151
           ++ G +       A T +D+ I+    PRK GM R DL + N  I +     + K    +
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 210
             V ++ NP N+   + +     A +  PK    +T LD  RA   VAE  G+   DV +
Sbjct: 119 CKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 211 VPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR-----------IQNGGTEVVEAK 258
           V + G H+  T  P ++         Q+                   +Q  G  ++ A+
Sbjct: 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR 233

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 16/164 (9%)

Query: 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 168
             DLV+I AG P+KPG TR DL   N  I +++   +     +    + SNPV+    I 
Sbjct: 73  DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----IL 128

Query: 169 AEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH---------- 217
                K   +  ++++G  T LD  R    ++E L +DPR V   ++G H          
Sbjct: 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSH 188

Query: 218 AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
           A V  +PL   ++    + +E+ + +   +++   E++E K GA
Sbjct: 189 ANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK-GA 231

Length = 315

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 17/187 (9%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADIS-HMDTGA-- 92
           +V + GAAG I   L        +     P++  LHL D+         +   +   A  
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDIPPALKALEGVVMELQDCAFP 61

Query: 93  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PN 151
           +++  +     E A   +D+ I+   +PRK GM R DL   N  I +   E + K    N
Sbjct: 62  LLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKN 121

Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 210
             V ++ NP N+   I     K A +   +    +T LD  RA + +A  LG+   DV +
Sbjct: 122 VKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKN 178

Query: 211 VPVVGGH 217
           V + G H
Sbjct: 179 VIIWGNH 185

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 22/200 (11%)

Query: 41  GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF 97
             KV ++G    G+   +++L K   L   L L DVV     G   D+ H   G+    F
Sbjct: 3   RNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH---GSA---F 54

Query: 98  LGQPQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152
           L  P++E     +      +VI+ AG  +  G +R DL   N  I + +   + K  PNA
Sbjct: 55  LKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNA 114

Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 211
            + ++SNPV+    I   V  K       +++G    LD  R    +AE LG+ P  V  
Sbjct: 115 ILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHG 170

Query: 212 PVVGGHAGVTILPLLSQVKP 231
            ++G H G + +P+ S V  
Sbjct: 171 WIIGEH-GDSSVPVWSGVNV 189

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 96  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATV 154
           G +   +LE A   +D   + A VP KPG  R DL   N  I +   E +++   P   V
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 214
            +I NPVN+   +A      A     +    + MLD  RA + +A  L +    +   VV
Sbjct: 107 LVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV 163

Query: 215 GGHAGVTILPLLSQV 229
            G+   +++  L+  
Sbjct: 164 WGNHAESMVADLTHA 178

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 34/238 (14%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 100
           KV+++G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 101 PQL----ENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
            ++    + A+T G DL I+ AG  + PG +R +L   N  + R +   +AK  P+  + 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           ++SNPV+    +A   +K +G +   +++G  T LD  R    +A+ L ++ +DV   +V
Sbjct: 152 IVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 215 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKA 259
           G H              GV +L  L   K   ++ +E  E +   + +   EV++ K 
Sbjct: 208 GEHGDSSVALWSSVSVGGVPVLSFLE--KQQIAYEKETLEEIHRAVVDSAYEVIKLKG 263

Length = 350

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)

Query: 48  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLEN 105
           G   G  QP+ + ++ I P    L+        GV  ++  +D    +++G +    +  
Sbjct: 5   GVMLGPDQPVILHMLDIPPAAEALN--------GVKMEL--IDAAFPLLKGVVATTDVVE 54

Query: 106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 164
           A  G+++ ++  G PRK GM R D+ + N  I ++    + K   P+  V +++NP N+ 
Sbjct: 55  ACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTN 114

Query: 165 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHA 218
             I  E    A +   K +  +T LD  RA   ++E LG+   DV +V + G H+
Sbjct: 115 ALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHS 166

Length = 309

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 30/243 (12%)

Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 91
           +VA+ GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 92  A--VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C 148
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 149 CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRD 208
             +  V ++ NP N+   IA    K A    P     +T LD  RA + +A+  G+   D
Sbjct: 119 SRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 209 VDVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGA 261
           V   V+ G+   T  P  +       P +    +  +L +     +Q  G  +++A+ GA
Sbjct: 176 VKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-GA 234

Query: 262 GSA 264
            SA
Sbjct: 235 SSA 237

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 32/244 (13%)

Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTGA 92
           +VA+ GAAG IG  L        ML K  P++  L L ++   P + A    +  +D  A
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKALEGVVMELDDCA 61

Query: 93  --VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 149
             ++ G +       A    D+ ++    PR PGM R DL   N  I     + + +   
Sbjct: 62  FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121

Query: 150 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 209
            +  V ++ NP N+   IA    K A     +    +T LD  RA + +A   G+   D+
Sbjct: 122 RDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADI 178

Query: 210 -DVPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN----RIQNGGTEVVEAKAG 260
             + V G H+  T  P         KP      ++  +L +     +Q  G  ++EA+ G
Sbjct: 179 KKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQ-AWLEDTFIPTVQKRGAAIIEAR-G 235

Query: 261 AGSA 264
           A SA
Sbjct: 236 ASSA 239

Length = 326

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 120 PRKPGMTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 175
           PR PGM R DL +IN  I     + L E +A    N  V ++ NP N+   I     K A
Sbjct: 187 PRGPGMERADLLDINGQIFAEQGKALNE-VAS--RNVKVIVVGNPCNTNALIC---LKNA 240

Query: 176 GTYDPKKLLGVTMLDVVRA 194
                K    +T LD  RA
Sbjct: 241 PNIPAKNFHALTRLDENRA 259

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PLN00106	323	malate dehydrogenase	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN02602	350	lactate dehydrogenase	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PLN00135	309	malate dehydrogenase	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.93
PRK15076	431	alpha-galactosidase; Provisional	99.93
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.92
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.87
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.85
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.82
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.81
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.8
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.95
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.94
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.87
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.8
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.78
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.72
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.71
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.67
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.67
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.66
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.64
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.62
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.6
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.6
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.57
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.56
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.55
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.55
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.52
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.48
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.47
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.45
PLN02427	386	UDP-apiose/xylose synthase	98.44
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.44
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.43
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.41
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.41
PLN00198	338	anthocyanidin reductase; Provisional	98.41
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.39
PLN02650	351	dihydroflavonol-4-reductase	98.37
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.37
PLN02206	442	UDP-glucuronate decarboxylase	98.36
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.36
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.36
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.34
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.34
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.33
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.33
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.32
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.3
PLN02214	342	cinnamoyl-CoA reductase	98.29
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.28
CHL00194	317	ycf39 Ycf39; Provisional	98.28
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.27
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.26
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.26
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.25
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.23
PLN02572	442	UDP-sulfoquinovose synthase	98.21
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.21
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.2
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	98.18
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.14
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.14
PLN02260	668	probable rhamnose biosynthetic enzyme	98.12
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.09
PLN02653	340	GDP-mannose 4,6-dehydratase	98.07
PLN02896	353	cinnamyl-alcohol dehydrogenase	98.07
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	98.06
PLN02778	298	3,5-epimerase/4-reductase	98.06
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.05
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.05
PRK10675	338	UDP-galactose-4-epimerase; Provisional	98.05
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.05
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.04
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.03
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.02
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.01
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.01
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.0
PLN02583	297	cinnamoyl-CoA reductase	97.99
PRK06194	287	hypothetical protein; Provisional	97.98
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.95
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.95
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.94
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.94
PRK07201	657	short chain dehydrogenase; Provisional	97.94
PLN03209	576	translocon at the inner envelope of chloroplast su	97.93
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.93
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.91
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.89
PLN02686	367	cinnamoyl-CoA reductase	97.89
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.88
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.87
PLN02240	352	UDP-glucose 4-epimerase	97.84
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.83
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.8
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.78
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.78
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	97.78
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.77
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.76
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.75
PRK08643	256	acetoin reductase; Validated	97.74
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.73
PRK07417	279	arogenate dehydrogenase; Reviewed	97.7
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.69
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.69
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.68
PRK05865	854	hypothetical protein; Provisional	97.67
PRK12829	264	short chain dehydrogenase; Provisional	97.65
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.64
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.64
PRK08267	260	short chain dehydrogenase; Provisional	97.64
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.64
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.64
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.62
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.61
PRK09135	249	pteridine reductase; Provisional	97.61
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.6
PLN02253	280	xanthoxin dehydrogenase	97.59
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.59
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.58
PRK05866	293	short chain dehydrogenase; Provisional	97.58
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.58
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.57
PRK12320	699	hypothetical protein; Provisional	97.56
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.56
PRK07680	273	late competence protein ComER; Validated	97.55
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.55
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.55
PLN02688	266	pyrroline-5-carboxylate reductase	97.53
PRK07102	243	short chain dehydrogenase; Provisional	97.53
PRK07806	248	short chain dehydrogenase; Provisional	97.53
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.52
PRK14982	340	acyl-ACP reductase; Provisional	97.52
PRK06482	276	short chain dehydrogenase; Provisional	97.52
PLN02996	491	fatty acyl-CoA reductase	97.51
PRK07326	237	short chain dehydrogenase; Provisional	97.5
PRK12828	239	short chain dehydrogenase; Provisional	97.49
PRK08655	437	prephenate dehydrogenase; Provisional	97.48
PRK05717	255	oxidoreductase; Validated	97.48
PRK07069	251	short chain dehydrogenase; Validated	97.48
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.46
PRK06182	273	short chain dehydrogenase; Validated	97.46
PRK08278	273	short chain dehydrogenase; Provisional	97.46
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.46
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.45
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.45
PRK07067	257	sorbitol dehydrogenase; Provisional	97.44
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.44
PRK06180	277	short chain dehydrogenase; Provisional	97.43
PRK05876	275	short chain dehydrogenase; Provisional	97.42
PRK06172	253	short chain dehydrogenase; Provisional	97.42
PRK07814	263	short chain dehydrogenase; Provisional	97.4
PRK06924	251	short chain dehydrogenase; Provisional	97.4
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.39
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.39
COG2910	211	Putative NADH-flavin reductase [General function p	97.37
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.37
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.37
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.37
PRK06545	359	prephenate dehydrogenase; Validated	97.36
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.36
PRK06914	280	short chain dehydrogenase; Provisional	97.36
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.36
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.36
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.35
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.34
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.34
PRK12939	250	short chain dehydrogenase; Provisional	97.34
PRK07774	250	short chain dehydrogenase; Provisional	97.33
PRK05855	582	short chain dehydrogenase; Validated	97.33
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.33
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.32
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.32
PRK06181	263	short chain dehydrogenase; Provisional	97.32
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.32
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.31
PRK08507	275	prephenate dehydrogenase; Validated	97.31
PRK07832	272	short chain dehydrogenase; Provisional	97.3
PRK07890	258	short chain dehydrogenase; Provisional	97.3
PRK12937	245	short chain dehydrogenase; Provisional	97.3
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	97.29
PLN02260	668	probable rhamnose biosynthetic enzyme	97.29
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.29
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.29
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.29
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.28
PRK07024	257	short chain dehydrogenase; Provisional	97.28
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.26
PRK12480	330	D-lactate dehydrogenase; Provisional	97.26
PRK05993	277	short chain dehydrogenase; Provisional	97.26
PRK07454	241	short chain dehydrogenase; Provisional	97.25
PRK09291	257	short chain dehydrogenase; Provisional	97.25
PRK08263	275	short chain dehydrogenase; Provisional	97.25
PRK06197	306	short chain dehydrogenase; Provisional	97.25
PRK12367	245	short chain dehydrogenase; Provisional	97.25
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.25
PRK10538	248	malonic semialdehyde reductase; Provisional	97.25
PRK05650	270	short chain dehydrogenase; Provisional	97.24
PRK12827	249	short chain dehydrogenase; Provisional	97.24
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.24
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.24
PRK05875	276	short chain dehydrogenase; Provisional	97.24
PRK06179	270	short chain dehydrogenase; Provisional	97.23
PRK06138	252	short chain dehydrogenase; Provisional	97.23
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.22
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.22
PRK08265	261	short chain dehydrogenase; Provisional	97.21
PRK07478	254	short chain dehydrogenase; Provisional	97.2
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.2
PRK13243	333	glyoxylate reductase; Reviewed	97.2
PRK07576	264	short chain dehydrogenase; Provisional	97.2
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.19
PRK06841	255	short chain dehydrogenase; Provisional	97.19
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	97.19
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.18
PLN02256	304	arogenate dehydrogenase	97.16
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.16
PRK09186	256	flagellin modification protein A; Provisional	97.16
PRK08219	227	short chain dehydrogenase; Provisional	97.16
PRK08251	248	short chain dehydrogenase; Provisional	97.15
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.15
PRK06701	290	short chain dehydrogenase; Provisional	97.14
PRK07856	252	short chain dehydrogenase; Provisional	97.14
PRK06057	255	short chain dehydrogenase; Provisional	97.13
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.13
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.13
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.12
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.12
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	97.1
PRK12746	254	short chain dehydrogenase; Provisional	97.1
PRK05854	313	short chain dehydrogenase; Provisional	97.1
PRK08589	272	short chain dehydrogenase; Validated	97.1
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.09
PRK06198	260	short chain dehydrogenase; Provisional	97.09
PLN00016	378	RNA-binding protein; Provisional	97.09
PRK06500	249	short chain dehydrogenase; Provisional	97.09
PRK08818	370	prephenate dehydrogenase; Provisional	97.08
PRK12935	247	acetoacetyl-CoA reductase; Provisional	97.08
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.06
PRK07904	253	short chain dehydrogenase; Provisional	97.06
PRK06196	315	oxidoreductase; Provisional	97.06
PRK07074	257	short chain dehydrogenase; Provisional	97.06
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.05
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.04
PRK06128	300	oxidoreductase; Provisional	97.04
PRK05867	253	short chain dehydrogenase; Provisional	97.04
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.03
PRK08264	238	short chain dehydrogenase; Validated	97.03
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.03
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.03
PRK06101	240	short chain dehydrogenase; Provisional	97.03
TIGR02415	254	23BDH acetoin reductases. One member of this famil	97.02
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.02
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	97.01
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.01
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.01
PLN02712	667	arogenate dehydrogenase	97.0
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.0
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.0
PRK07063	260	short chain dehydrogenase; Provisional	97.0
PRK08226	263	short chain dehydrogenase; Provisional	97.0
PLN02780	320	ketoreductase/ oxidoreductase	96.99
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.99
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.99
PRK06398	258	aldose dehydrogenase; Validated	96.98
PRK07109	334	short chain dehydrogenase; Provisional	96.98
PRK12743	256	oxidoreductase; Provisional	96.97
PRK06523	260	short chain dehydrogenase; Provisional	96.97
PRK07060	245	short chain dehydrogenase; Provisional	96.97
PRK07577	234	short chain dehydrogenase; Provisional	96.97
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.97
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.96
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.96
PRK06949	258	short chain dehydrogenase; Provisional	96.95
PRK07677	252	short chain dehydrogenase; Provisional	96.94
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.94
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.93
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.93
PLN02503	605	fatty acyl-CoA reductase 2	96.93
PRK07574	385	formate dehydrogenase; Provisional	96.93
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.92
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.92
PRK07062	265	short chain dehydrogenase; Provisional	96.92
PRK08628	258	short chain dehydrogenase; Provisional	96.92
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.91
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.91
PRK08605	332	D-lactate dehydrogenase; Validated	96.9
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.89
PRK05693	274	short chain dehydrogenase; Provisional	96.88
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	96.88
PRK09242	257	tropinone reductase; Provisional	96.88
PRK12742	237	oxidoreductase; Provisional	96.88
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.88
PRK09072	263	short chain dehydrogenase; Provisional	96.87
PRK07035	252	short chain dehydrogenase; Provisional	96.87
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.87
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.87
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.86
PRK08339	263	short chain dehydrogenase; Provisional	96.85
PRK08862	227	short chain dehydrogenase; Provisional	96.85
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.85
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.84
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.83
PRK09134	258	short chain dehydrogenase; Provisional	96.83
PRK06139	330	short chain dehydrogenase; Provisional	96.82
PLN03139	386	formate dehydrogenase; Provisional	96.82
PRK09009	235	C factor cell-cell signaling protein; Provisional	96.81
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.8
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.79
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.79
PRK06114	254	short chain dehydrogenase; Provisional	96.78
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.78
PRK07831	262	short chain dehydrogenase; Provisional	96.77
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.77
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.77
PRK07825	273	short chain dehydrogenase; Provisional	96.77
PRK08324	681	short chain dehydrogenase; Validated	96.76
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.76
PRK12747	252	short chain dehydrogenase; Provisional	96.76
PRK07023	243	short chain dehydrogenase; Provisional	96.75
PRK05884	223	short chain dehydrogenase; Provisional	96.75
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.75
PLN02928	347	oxidoreductase family protein	96.74
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	96.74
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.73
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.71
PRK06953	222	short chain dehydrogenase; Provisional	96.7
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.7
PRK12744	257	short chain dehydrogenase; Provisional	96.69
PRK05872	296	short chain dehydrogenase; Provisional	96.69
PRK07775	274	short chain dehydrogenase; Provisional	96.68
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.68
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.67
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
PRK07201	657	short chain dehydrogenase; Provisional	96.65
PRK08703	239	short chain dehydrogenase; Provisional	96.65
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.64
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.64
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.63
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.62
PLN02712	667	arogenate dehydrogenase	96.62
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.62
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.61
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.6
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.6
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.59
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.59
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.59
PRK06123	248	short chain dehydrogenase; Provisional	96.56
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.55
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.54
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.53
PRK06940	275	short chain dehydrogenase; Provisional	96.52
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.51
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.49
PRK08177	225	short chain dehydrogenase; Provisional	96.49
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.49
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.45
PRK07578	199	short chain dehydrogenase; Provisional	96.45
PRK07985	294	oxidoreductase; Provisional	96.45
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.44
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	96.44
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.42
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.41
PLN02494	477	adenosylhomocysteinase	96.41
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.41
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.39
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.36
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.36
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.36
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.36
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.34
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.33
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.33
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.32
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.31
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.31
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.28
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.28
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.27
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.26
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.26
PRK05599	246	hypothetical protein; Provisional	96.26
PRK06125	259	short chain dehydrogenase; Provisional	96.25
PRK08017	256	oxidoreductase; Provisional	96.24
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.23
PLN02383	344	aspartate semialdehyde dehydrogenase	96.23
PRK06483	236	dihydromonapterin reductase; Provisional	96.23
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.22
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.22
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.19
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.17
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.17
PRK08291	330	ectoine utilization protein EutC; Validated	96.15
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.14
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.14
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.14
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.14
PRK08618	325	ornithine cyclodeaminase; Validated	96.13
COG2344	211	AT-rich DNA-binding protein [General function pred	96.13
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.12
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.11
PRK06484	520	short chain dehydrogenase; Validated	96.11
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.08
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.08
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.08
PRK06436	303	glycerate dehydrogenase; Provisional	96.08
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.07
PRK06407	301	ornithine cyclodeaminase; Provisional	96.05
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.99
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.99
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.98
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.98
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.98
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.97
PRK07340	304	ornithine cyclodeaminase; Validated	95.97
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.96
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.94
PRK07041	230	short chain dehydrogenase; Provisional	95.94
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	95.93
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	95.92
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.92
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	95.91
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.89
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.89
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	95.88
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.86
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.85
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.84
PLN02306	386	hydroxypyruvate reductase	95.83
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.82
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.8
PRK06141	314	ornithine cyclodeaminase; Validated	95.79
PRK13529	563	malate dehydrogenase; Provisional	95.79
PRK06484	520	short chain dehydrogenase; Validated	95.77
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.76
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.74
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.73
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.72
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.71
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.69
PRK08223	287	hypothetical protein; Validated	95.69
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.69
PRK09496	453	trkA potassium transporter peripheral membrane com	95.66
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.65
PRK07589	346	ornithine cyclodeaminase; Validated	95.65
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.64
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.63
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.6
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	95.59
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.57
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.57
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.56
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.53
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.53
PRK06823	315	ornithine cyclodeaminase; Validated	95.51
KOG1208	314	consensus Dehydrogenases with different specificit	95.51
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	95.5
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	95.48
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	95.47
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.46
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.46
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.45

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=4e-58  Score=422.81  Aligned_cols=235  Identities=71%  Similarity=1.085  Sum_probs=217.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||+||||+|+||+++|+.|+.+++++||+|+|++.++|+++||.|......++.+.+++|++++++|||+||+|||.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            59999998899999999999999999999999998778999999998744456543233466799999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHH
Q 023671          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  201 (279)
Q Consensus       122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~  201 (279)
                      ++|++|+|++..|++++++++++|++++|++|+|++|||+|+||+++++++++.+++|++||||+|.|||+||++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             cCCCCCCCcceeecCC-CCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          202 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       202 l~v~~~~V~~~ViGeh-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +|++|++|+++||||| |+ ++||+||++.+...++++++++|.++|+++|++|+++|.|||+|+||+|.+++++++
T Consensus       161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~  236 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFAN  236 (310)
T ss_pred             hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHH
Confidence            9999999999999999 78 999999999885456666789999999999999999877889999999999999986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=6.4e-57  Score=415.34  Aligned_cols=235  Identities=63%  Similarity=0.995  Sum_probs=215.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  122 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~k  122 (279)
                      ||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||.|......++.+.+.++++++++|||+||+|+|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999999999999999999999999999999998889999999986433455322223457899999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHc
Q 023671          123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL  202 (279)
Q Consensus       123 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l  202 (279)
                      +|++|+|++..|++++++++++|.+++|++++|++|||+|++++++++++++.+++|++||||+|.|||+|||++||+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888999999999999999998899999999999999


Q ss_pred             CCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          203 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       203 ~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +++|++|+++||||||+++++|+||++++...++++++++|.++|+++|++|+++|.|||+|+||+|.|++++++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~  235 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVL  235 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHH
Confidence            999999999999999876999999999865446666789999999999999999876899999999999998876

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=5.8e-56  Score=405.51  Aligned_cols=226  Identities=41%  Similarity=0.614  Sum_probs=204.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +||+|||| |+||+++|+.|+.+++.+|++|+|+++  ++|.++||.|....  ...+... +.+ +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence            59999999 999999999998888888999999997  79999999998743  2344332 245 58899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  196 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~  196 (279)
                      |.||||||+|+|++..|++|+++++++|.+++||++++++|||+|+|||++    |+.+++|++||||+ |.|||+||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999865    78899999999999 8999999999


Q ss_pred             HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----C-C---CHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHH
Q 023671          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-F---TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM  268 (279)
Q Consensus       197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----~-~---~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~  268 (279)
                      +||++++++|++|+++|+||||+ ++||+||++++++    + +   +++++++|.++||++|++|+++| |.| ++||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999999 9999999999975    1 2   23567899999999999999998 555 99999


Q ss_pred             HHHHHHHHh
Q 023671          269 RLNLRMHAS  277 (279)
Q Consensus       269 A~a~~~~~~  277 (279)
                      |.|++++++
T Consensus       231 A~a~a~~~~  239 (313)
T COG0039         231 AAALARMVE  239 (313)
T ss_pred             HHHHHHHHH
Confidence            999999986

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=7.7e-55  Score=403.04  Aligned_cols=246  Identities=79%  Similarity=1.185  Sum_probs=226.5

Q ss_pred             hhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCC
Q 023671           32 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        32 ~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~AD  111 (279)
                      .|+++++..+.||+||||+|+||+++++.|+.+++++||+|+|+++++++++||.|......+..+.+++|++++++|||
T Consensus         9 ~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aD   88 (323)
T PLN00106          9 ACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGAD   88 (323)
T ss_pred             ccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCC
Confidence            69999999999999999999999999999999999999999999988899999999876555655445667889999999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhH
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV  191 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds  191 (279)
                      +||++||.|+++|++|+|++..|+++++++++++++++|+++++++|||+|.+++++++++++.+++||+||||+|.||+
T Consensus        89 iVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs  168 (323)
T PLN00106         89 LVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDV  168 (323)
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchH
Confidence            99999999999999999999999999999999999999999999999999966666667778999999999999988999


Q ss_pred             HHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHH
Q 023671          192 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLN  271 (279)
Q Consensus       192 ~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a  271 (279)
                      +||++++|+++|+++.+|+++|+||||++++||+||++++...++++++++|.++|+++|++|+++|.|||+|+||+|.+
T Consensus       169 ~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a  248 (323)
T PLN00106        169 VRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYA  248 (323)
T ss_pred             HHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHH
Confidence            99999999999999999999999999766999999999775446677799999999999999999876889999999999


Q ss_pred             HHHHHh
Q 023671          272 LRMHAS  277 (279)
Q Consensus       272 ~~~~~~  277 (279)
                      ++++++
T Consensus       249 ~~~ii~  254 (323)
T PLN00106        249 AARFAD  254 (323)
T ss_pred             HHHHHH
Confidence            999986

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.3e-55  Score=386.88  Aligned_cols=224  Identities=23%  Similarity=0.373  Sum_probs=207.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC---CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~---~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      ..||+|+|+ |.||+++|+.++.+++.+|++|+|.++  ++|++|||+|...   .+++..   ..| +.+.+++++||+
T Consensus        20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~D-y~~sa~S~lvIi   94 (332)
T KOG1495|consen   20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKD-YSVSANSKLVII   94 (332)
T ss_pred             CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCc-ccccCCCcEEEE
Confidence            569999999 999999999999999999999999998  8999999999864   344443   347 478999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      |||..+++|++|++++++|+.+++.+++++.+|.|+++++++|||+|+|||++    ||.+|||++||||. |+|||+||
T Consensus        95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRF  170 (332)
T KOG1495|consen   95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARF  170 (332)
T ss_pred             ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHH
Confidence            99999999999999999999999999999999999999999999999999765    99999999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC------------CCCHHHHHHHHHHHHhhHHHHHhhhcCCC
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~g~g  262 (279)
                      |++++++||++|+++++||+||||| +.||+||.+.+.+            ..+++.|+++.++|.+++||||++|   |
T Consensus       171 ryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---G  246 (332)
T KOG1495|consen  171 RYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---G  246 (332)
T ss_pred             HHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            9999999999999999999999999 8999999998853            1356779999999999999999976   7


Q ss_pred             cchHHHHHHHHHHHh
Q 023671          263 SATLSMRLNLRMHAS  277 (279)
Q Consensus       263 s~~~s~A~a~~~~~~  277 (279)
                      +|.|++|++++++++
T Consensus       247 yTswaIglsva~l~~  261 (332)
T KOG1495|consen  247 YTSWAIGLSVADLAQ  261 (332)
T ss_pred             chHHHHHHHHHHHHH
Confidence            999999999999875

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=7.9e-54  Score=394.52  Aligned_cols=223  Identities=27%  Similarity=0.370  Sum_probs=202.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC---CeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~---~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|....   .+++...  .| +++++|||+||+||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence            7999999 999999999999999999999999987  78999999997642   2455543  46 58899999999999


Q ss_pred             CCCCCCCCc--hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          118 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       118 g~~~k~g~~--r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      |.|+++|++  |+|++..|++++++++++|.+++|+++++++|||+|+|||++    ++.+|+|++||||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999999765    77889999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----C-----CHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----F-----TQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~-----~~~~~~~i~~~v~~~~~~i~~~k~g~gs~  264 (279)
                      ++++|+++|++|++|+++||||||+ +++|+||++++++ +    +     ++.++++|.++++++|++|++.   ||+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR---KGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHc---cCee
Confidence            9999999999999999999999999 9999999999865 1    1     1224789999999999999995   5789


Q ss_pred             hHHHHHHHHHHHh
Q 023671          265 TLSMRLNLRMHAS  277 (279)
Q Consensus       265 ~~s~A~a~~~~~~  277 (279)
                      +|++|.+++++++
T Consensus       229 ~~~ia~a~~~ii~  241 (307)
T cd05290         229 NAGIAKSASRLIK  241 (307)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999999986

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-52  Score=385.16  Aligned_cols=237  Identities=63%  Similarity=0.950  Sum_probs=213.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+|.||+||||+|.||+++++.|+.+++++||+|+|++.+.++++||.|......+.......+++++++|||+||+++|
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            35669999998899999999999999999999999996589999999998654344433222343689999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  198 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~l  198 (279)
                      .+++++++|.+++..|++++++++++|++++|+++++++|||+|+|++++.+.+++.+++||+||||++.|||+||+++|
T Consensus        86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l  165 (321)
T PTZ00325         86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV  165 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987555578899999999999779999999999


Q ss_pred             HHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       199 a~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      |+++|++|++|+++|+||||++++||+||++.+  +++++++++|.++|+++|++|+++|+|||+|+|++|.+++++++
T Consensus       166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~  242 (321)
T PTZ00325        166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWST  242 (321)
T ss_pred             HHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Confidence            999999999999999999998569999999943  57777899999999999999999987889999999999999876

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.7e-52  Score=386.60  Aligned_cols=226  Identities=24%  Similarity=0.341  Sum_probs=202.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCe-EEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAV-VRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~-v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+..... .... .++|+ ++++|||+||+|+
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence            469999998 999999999999999999999999987  7899999999873221 1222 23575 6799999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  196 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~  196 (279)
                      |.++++|++|+|++..|+++++++++.|++++|++++|++|||+|+||+++    ++.+++|++||||+ |.||++|+++
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~  155 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY  155 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999755    77789999999999 9999999999


Q ss_pred             HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC------------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (279)
Q Consensus       197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~  264 (279)
                      ++|+++++++++|+++|+||||+ +++|+||++++++.            .+++++++|.++++++|++|++.   ||+|
T Consensus       156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t  231 (312)
T cd05293         156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL---KGYT  231 (312)
T ss_pred             HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHh---cCCc
Confidence            99999999999999999999998 99999999998641            12345889999999999999995   4789


Q ss_pred             hHHHHHHHHHHHh
Q 023671          265 TLSMRLNLRMHAS  277 (279)
Q Consensus       265 ~~s~A~a~~~~~~  277 (279)
                      +|++|.+++++++
T Consensus       232 ~~~~a~a~~~ii~  244 (312)
T cd05293         232 SWAIGLSVADLVD  244 (312)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999999986

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=8e-52  Score=386.71  Aligned_cols=225  Identities=24%  Similarity=0.392  Sum_probs=202.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +||+|||+ |.||+++|+.|+.+++++||+|+|+++  ++|+++||.|.... ...+.. ..+| +++++|||+||+|||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d-y~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTD-YAVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCC-HHHhCCCCEEEECCC
Confidence            59999998 999999999999999999999999988  78999999998632 223332 2346 477999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~  197 (279)
                      .++++|++|.|++..|++++++++++|+++||++++|++|||+|++|+++    ++.+++|++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    66779999999999 69999999999


Q ss_pred             HHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC------------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       198 la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      +|+++|+++++|+++||||||+ +++|+||++++++            .++++++++|.++++++|++|++.   ||+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL---KGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhc---CCccH
Confidence            9999999999999999999998 9999999998854            123345789999999999999995   57899


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      |++|.+++++++
T Consensus       267 ~gia~a~a~ii~  278 (350)
T PLN02602        267 WAIGYSVASLVR  278 (350)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999886

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=9.8e-52  Score=382.73  Aligned_cols=227  Identities=29%  Similarity=0.409  Sum_probs=200.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccC-C-CeEEEEeCCCCHHhhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~-~-~~v~~~~~~~d~~eal~  108 (279)
                      ++.||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||.|... . ..++..  .++ +++++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   78 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFK   78 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhC
Confidence            46799999988999999999999999999     999999954    6899999999862 1 223322  234 68999


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeee
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  186 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~  186 (279)
                      |||+||+|||.|+++|++|.|++..|++++++++++|++++| +++++++|||+|+|||++    ++.+ +||++||||+
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~  154 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSAM  154 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence            999999999999999999999999999999999999999998 999999999999999865    6778 9999999999


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhhh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK  258 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k  258 (279)
                      |.|||+|||++||+++|++|++|+ .+||||||+ +++|+||++++++ +    +++++  +++|.++++++|++|+++|
T Consensus       155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  233 (323)
T TIGR01759       155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR  233 (323)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc
Confidence            999999999999999999999996 569999998 9999999999864 1    33333  6799999999999999965


Q ss_pred             cCCCcchH-HHHHHHHHHHh
Q 023671          259 AGAGSATL-SMRLNLRMHAS  277 (279)
Q Consensus       259 ~g~gs~~~-s~A~a~~~~~~  277 (279)
                         |+++| ++|.+++++++
T Consensus       234 ---G~t~~~~~a~a~~~iv~  250 (323)
T TIGR01759       234 ---GASSAASAANAAIDHVR  250 (323)
T ss_pred             ---CCcchHHHHHHHHHHHH
Confidence               66777 57799999886

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=5.5e-51  Score=376.71  Aligned_cols=234  Identities=61%  Similarity=0.935  Sum_probs=210.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |||+||||+|.||+++++.|.. .+...+++|+|+++ ..++++|+.|......+... ..+|++++++|+|+||+|+|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            6999999999999999998865 56778999999987 67788999985322334431 134667899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHH
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  199 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la  199 (279)
                      +++++++|.|++..|++++++++++|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+||++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888899999999999998899999999999


Q ss_pred             HHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          200 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       200 ~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +++|++|++|+++||||||++++||+||++ -+.+++++++++|.++|+++|++|+++|.|+|+|+||+|.+++++++
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~  236 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGL  236 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHH
Confidence            999999999999999999777999999999 33357777799999999999999999887889999999999999876

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=3.9e-51  Score=361.65  Aligned_cols=262  Identities=69%  Similarity=1.051  Sum_probs=243.2

Q ss_pred             hhHHHHHHhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhc
Q 023671            8 NQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH   87 (279)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~   87 (279)
                      ++++.|.++++-++.  ..+|.      ...+...||+|.||+|-+|+.+.++|+++++++++.|||+..+.|.+.||.|
T Consensus         3 ~~~~~~~~~~~~~~~--~~~~~------~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSH   74 (345)
T KOG1494|consen    3 LKSLIRSSASLSSGP--KRVFS------SGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSH   74 (345)
T ss_pred             hHHHHHhhhhhccCC--ccccc------ccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccc
Confidence            577888888877521  22333      3345566999999999999999999999999999999999989999999999


Q ss_pred             ccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHH
Q 023671           88 MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI  167 (279)
Q Consensus        88 ~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~  167 (279)
                      +++...+..+.+.+.+++++++||+|||.||+||||||+|+|++..|+.|+++++..+.++||++.+.++|||+|.+.++
T Consensus        75 I~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPI  154 (345)
T KOG1494|consen   75 INTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPI  154 (345)
T ss_pred             cCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchH
Confidence            99888899888778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCC-CCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHH
Q 023671          168 AAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR  246 (279)
Q Consensus       168 ~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~-~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~  246 (279)
                      ++|++++.+.|+|+|+||+|.||..|.+.++++.++++| .+++++|+|+|.+.|++|++|+.++...+++++++.++.+
T Consensus       155 aaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~R  234 (345)
T KOG1494|consen  155 AAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHR  234 (345)
T ss_pred             HHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 5599999999988899999999998777899999999999


Q ss_pred             HHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          247 IQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       247 v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      ++.+|.|+.+.|.|+||+.+|+|+|.++|++
T Consensus       235 iQ~gGtEVV~AKaGaGSATLSMAyAga~fa~  265 (345)
T KOG1494|consen  235 IQNGGTEVVKAKAGAGSATLSMAYAGAKFAD  265 (345)
T ss_pred             HHhCCceEEEeccCCCchhhhHHHHHHHHHH
Confidence            9999999999999999999999999999875

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-51  Score=378.36  Aligned_cols=227  Identities=24%  Similarity=0.358  Sum_probs=201.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhccc-CC-CeEEEEeCCCCHHhhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMD-TG-AVVRGFLGQPQLENALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~-~~-~~v~~~~~~~d~~eal~  108 (279)
                      .++||+||||+|+||+++++.|...++++     ||+|+|+++    ++|+++||.|.. .. ..++..  +++ +++++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence            46799999988999999999999999998     999999954    689999999986 21 234432  234 68999


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeee
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  186 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~  186 (279)
                      |||+||+|||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+|||++    ++.+ +||++||||+
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~  155 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEee
Confidence            99999999999999999999999999999999999999988 7999999999999999865    6677 9999999999


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcce-eecCCCCceeeeecccCCCCCC-----CCHHH--HHHHHHHHHhhHHHHHhhh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVVEAK  258 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~-ViGehg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~~~~i~~~k  258 (279)
                      |.|||+|||++||++++++|++|+++ ||||||+ +++|+||++++++.     +++++  +++|.++++++|++|+++ 
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  233 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA-  233 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC-
Confidence            99999999999999999999999986 5899999 99999999999751     34433  579999999999999995 


Q ss_pred             cCCCcchHHHHHH-HHHHHh
Q 023671          259 AGAGSATLSMRLN-LRMHAS  277 (279)
Q Consensus       259 ~g~gs~~~s~A~a-~~~~~~  277 (279)
                        ||+++|++|.+ ++++++
T Consensus       234 --kG~t~~~~a~~~~~~iv~  251 (326)
T PRK05442        234 --RGASSAASAANAAIDHVR  251 (326)
T ss_pred             --cCCccHHHHHHHHHHHHH
Confidence              47888999999 588876

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=5.2e-51  Score=374.73  Aligned_cols=220  Identities=23%  Similarity=0.399  Sum_probs=198.2

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|....  ..++..  ..+ +++++|||+||+|||.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence            6898 999999999999999999999999987  79999999998632  234433  245 589999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHHHHH
Q 023671          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE  200 (279)
Q Consensus       122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~la~  200 (279)
                      ++||+|.|++..|++++++++++|++++|++++|++|||+|+||+++    ++.+++|++||||+ |.|||+|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999765    67789999999999 89999999999999


Q ss_pred             HcCCCCCCCcceeecCCCCceeeeecccCCCCC-C---C-C------HHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHH
Q 023671          201 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---F-T------QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR  269 (279)
Q Consensus       201 ~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~---~-~------~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A  269 (279)
                      +++++|++|+++||||||+ +++|+||++++++ +   + +      +.++++|.++++++|++|++.   ||+|+|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINR---KGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhc---CCeeeHHHH
Confidence            9999999999999999998 9999999999865 1   1 1      234779999999999999995   578999999


Q ss_pred             HHHHHHHh
Q 023671          270 LNLRMHAS  277 (279)
Q Consensus       270 ~a~~~~~~  277 (279)
                      .+++++++
T Consensus       229 ~a~~~~i~  236 (299)
T TIGR01771       229 MAVARIVE  236 (299)
T ss_pred             HHHHHHHH
Confidence            99999986

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=8e-50  Score=369.41  Aligned_cols=225  Identities=24%  Similarity=0.391  Sum_probs=203.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+||+|||| |.||+++++.|+.+++++||+|+|+++  ++|+++||.|.... .++...  +++ +++++|||+||+++
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~-~~~~~~adivIita   81 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGD-YSDCKDADLVVITA   81 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCC-HHHhCCCCEEEEec
Confidence            469999999 999999999999999999999999987  78999999998632 234443  245 57899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  196 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~  196 (279)
                      |.|+++|++|.|++..|+++++++++.+++++|+++++++|||+|+||+++    ++.+++|++||||+ |.|||.|+++
T Consensus        82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~~  157 (315)
T PRK00066         82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFRY  157 (315)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999765    66689999999999 7899999999


Q ss_pred             HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      ++|+++|++|++|+++||||||+ +++|+||++++++           .+++++++++.++++++|++|++.   ||++.
T Consensus       158 ~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kg~t~  233 (315)
T PRK00066        158 MLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK---KGATY  233 (315)
T ss_pred             HHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc---CCeeh
Confidence            99999999999999999999998 9999999999864           134466889999999999999995   47899


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      |++|.+++++++
T Consensus       234 ~~~a~~~~~i~~  245 (315)
T PRK00066        234 YGIAMALARITK  245 (315)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999886

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=2.8e-49  Score=377.53  Aligned_cols=228  Identities=24%  Similarity=0.272  Sum_probs=200.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhh
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENAL  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~-------~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal  107 (279)
                      .++.||+||||+|+||+++++.|+.+       +++.||+|+|+++  ++|+++||+|...  ...+...  +.+ ++++
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~~  174 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEVF  174 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence            45679999999999999999999998       7778999999988  7999999999862  1234322  345 6899


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-hCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~-~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      +|||+||++||.|+++|++|.|++..|++++++++++|++ ++|++++|++|||+|+||+++    ++.++++++|+||+
T Consensus       175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViGt  250 (444)
T PLN00112        175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFHA  250 (444)
T ss_pred             CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEEe
Confidence            9999999999999999999999999999999999999999 589999999999999999765    77789999999999


Q ss_pred             -cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhh
Q 023671          187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEA  257 (279)
Q Consensus       187 -t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~  257 (279)
                       |.||++||+++||+++|+++++|+ ++||||||+ ++||+||++++++ +    +++.+  +++|.++++++|++|++.
T Consensus       251 gT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~  329 (444)
T PLN00112        251 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKK  329 (444)
T ss_pred             eccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhc
Confidence             899999999999999999999994 689999999 9999999999975 2    33334  679999999999999995


Q ss_pred             hcCCCcchH-HHHHHHHHHHh
Q 023671          258 KAGAGSATL-SMRLNLRMHAS  277 (279)
Q Consensus       258 k~g~gs~~~-s~A~a~~~~~~  277 (279)
                      |   |++++ ++|.+++++++
T Consensus       330 k---G~t~~~s~a~ai~~~I~  347 (444)
T PLN00112        330 W---GRSSAASTAVSIADAIK  347 (444)
T ss_pred             c---CchhHHHHHHHHHHHHH
Confidence            5   44555 99999999875

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=2.1e-49  Score=367.47  Aligned_cols=224  Identities=31%  Similarity=0.445  Sum_probs=196.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~AD  111 (279)
                      ||+||||+|+||+++++.|+.+++++     +|+|+|+++    ++|+++||.|...  .......  . +.+++++|||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~-~~~~~~~~aD   78 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--T-DPEEAFKDVD   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--c-ChHHHhCCCC
Confidence            89999999999999999999999888     499999985    6899999999852  2223322  2 3478999999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCC-CCCCCeeeecch
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTML  189 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~-~~~~kViG~t~l  189 (279)
                      +||++||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+||+++    ++.+| +|++||||+|.|
T Consensus        79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~L  154 (323)
T cd00704          79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTRL  154 (323)
T ss_pred             EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeHH
Confidence            99999999999999999999999999999999999996 9999999999999999765    67788 599999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCCC---------CCHH-HHHHHHHHHHhhHHHHHhhh
Q 023671          190 DVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPCS---------FTQE-ETEYLTNRIQNGGTEVVEAK  258 (279)
Q Consensus       190 ds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~~---------~~~~-~~~~i~~~v~~~~~~i~~~k  258 (279)
                      ||+|||++||++++++|++|+ ++||||||+ +++|+||++++++.         ++++ ..++|.++++++|++|+++|
T Consensus       155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~k  233 (323)
T cd00704         155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKR  233 (323)
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhcc
Confidence            999999999999999999995 689999999 99999999998642         2222 25789999999999999965


Q ss_pred             cCCCcchHH-HHHHHHHHHh
Q 023671          259 AGAGSATLS-MRLNLRMHAS  277 (279)
Q Consensus       259 ~g~gs~~~s-~A~a~~~~~~  277 (279)
                         |+++|+ +|.|++++++
T Consensus       234 ---g~t~~~~~a~a~~~iv~  250 (323)
T cd00704         234 ---GASSAASAAKAIADHVK  250 (323)
T ss_pred             ---CcchhHHHHHHHHHHHH
Confidence               567776 6999999986

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=3.5e-49  Score=371.79  Aligned_cols=228  Identities=24%  Similarity=0.295  Sum_probs=198.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCC--chhHHhhhhccc-C-CCeEEEEeCCCCHHhhh
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMD-T-GAVVRGFLGQPQLENAL  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~--D~~~--~~g~~~DL~~~~-~-~~~v~~~~~~~d~~eal  107 (279)
                      .++.||+||||+|+||+++|+.|+.+++++     +|+|+  |+++  ++|+++||.|.. . ...+...  +++ ++++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~~~  118 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YEVF  118 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence            456799999999999999999999999988     56677  6665  789999999986 2 2233322  345 6899


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      +|||+||+|||.|+++|++|.|++..|+++++++++.|++++ |++++|++|||+|+||+++    ++.+++|++|+||+
T Consensus       119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG~  194 (387)
T TIGR01757       119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFHA  194 (387)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEEe
Confidence            999999999999999999999999999999999999999987 9999999999999999765    67789999999999


Q ss_pred             -cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhh
Q 023671          187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEA  257 (279)
Q Consensus       187 -t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~  257 (279)
                       |.|||+|||++||++++++|++|+ ++||||||+ +++|+||++++++ +    +++.+  +++|.++|+++|++|++.
T Consensus       195 gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~  273 (387)
T TIGR01757       195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKK  273 (387)
T ss_pred             cchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence             899999999999999999999995 999999998 9999999999865 2    22223  679999999999999996


Q ss_pred             hcCCCcchH-HHHHHHHHHHh
Q 023671          258 KAGAGSATL-SMRLNLRMHAS  277 (279)
Q Consensus       258 k~g~gs~~~-s~A~a~~~~~~  277 (279)
                      |   |++.+ ++|.+++++++
T Consensus       274 K---G~t~~~s~a~ai~~~i~  291 (387)
T TIGR01757       274 W---GRSSAASTAVSIADAIK  291 (387)
T ss_pred             c---CchhHHHHHHHHHHHHH
Confidence            5   44444 99999999875

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=7.3e-49  Score=361.86  Aligned_cols=224  Identities=25%  Similarity=0.377  Sum_probs=200.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +||+|||+ |.||+++++.|+..++..+|+|+|+++  +++.++||.|...  .......  ..+ ++++++||+||+|+
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~-~~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGD-YSDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCC-HHHhCCCCEEEEcc
Confidence            38999998 999999999999999888999999987  6889999998753  1223332  235 46799999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  196 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~  196 (279)
                      |.|+++|++|.|++..|++++++++++|++++|++++|++|||+|+||+++    ++.+++|++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999765    66789999999999 7999999999


Q ss_pred             HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C---------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchH
Q 023671          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  266 (279)
Q Consensus       197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~  266 (279)
                      ++|+++++++++|+++||||||+ +++|+||++++++ +         +.+++++++.++++++|++|++.   ||+++|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING---KGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc---cCccHH
Confidence            99999999999999999999998 9999999999864 1         23456889999999999999995   578999


Q ss_pred             HHHHHHHHHHh
Q 023671          267 SMRLNLRMHAS  277 (279)
Q Consensus       267 s~A~a~~~~~~  277 (279)
                      ++|.|++++++
T Consensus       229 ~~a~a~~~~~~  239 (306)
T cd05291         229 GIATALARIVK  239 (306)
T ss_pred             HHHHHHHHHHH
Confidence            99999999986

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-48  Score=359.54  Aligned_cols=228  Identities=32%  Similarity=0.514  Sum_probs=203.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCC--eEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~--~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +.+.++|+.|.....  ..+. ..++|+ ++++|||+||+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~~~d~-~~l~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LGTNNY-EDIKDSDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEE-EeCCCH-HHhCCCCEEEE
Confidence            4569999998 9999999999999997 6899999988  678999999975322  2232 224575 58999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-chhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~lds~R~  194 (279)
                      ++|.++++|++|.|++..|.++++++++.|+++||++|++++|||+|++|+++    ++.+++|++||+|+| .||++|+
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~  155 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF  155 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999654    677899999999995 8999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~  264 (279)
                      +++||++++++|++|+++|+||||+ +++|+||++++++          .++++++++|.++++++|++|++++ |||++
T Consensus       156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t  233 (319)
T PTZ00117        156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA  233 (319)
T ss_pred             HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence            9999999999999999999999998 9999999999864          1456668899999999999999986 78999


Q ss_pred             hHHHHHHHHHHHh
Q 023671          265 TLSMRLNLRMHAS  277 (279)
Q Consensus       265 ~~s~A~a~~~~~~  277 (279)
                      .|++|++++++++
T Consensus       234 ~~~~a~a~~~~~~  246 (319)
T PTZ00117        234 FFAPAAAIVAMIE  246 (319)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999986

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1.2e-48  Score=362.37  Aligned_cols=227  Identities=23%  Similarity=0.341  Sum_probs=200.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccC--CCeEEEEeCCCCHHhhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~  108 (279)
                      +++||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||.|...  ...++..  +.+ +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            46799999988999999999999999999     999999954    6899999999862  1234432  334 68999


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeee
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  186 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~  186 (279)
                      |||+||+|||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+||+++    ++.+ ++|++||||+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999999865    5677 5999999999


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcc-eeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhhh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK  258 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~-~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k  258 (279)
                      |.||++||++++|+++|+++++|++ +||||||+ +++|+||++++++ +    +++.+  +++|.++++++|++|+++ 
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  231 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA-  231 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhC-
Confidence            9999999999999999999999998 56999998 9999999998864 1    34433  579999999999999995 


Q ss_pred             cCCCcchHHHH-HHHHHHHh
Q 023671          259 AGAGSATLSMR-LNLRMHAS  277 (279)
Q Consensus       259 ~g~gs~~~s~A-~a~~~~~~  277 (279)
                        ||+++|++| .+++++++
T Consensus       232 --kG~t~~~~~a~a~~~iv~  249 (322)
T cd01338         232 --RGASSAASAANAAIDHMR  249 (322)
T ss_pred             --cCCccHHHHHHHHHHHHH
Confidence              477889999 59999986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=3.7e-48  Score=359.07  Aligned_cols=228  Identities=35%  Similarity=0.601  Sum_probs=203.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +.+||+|||| |.||+++++.++..++ .+|+|+|+++  +.+.++|+.|...  ....+.. .++|+ ++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~   80 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV   80 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence            4579999998 9999999999999997 4699999988  5788999999742  1222332 24575 78999999999


Q ss_pred             ccCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-ch
Q 023671          116 PAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-ML  189 (279)
Q Consensus       116 tag~~~k~g~-----~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~l  189 (279)
                      |+|.++++|+     +|.+++..|++++++++++|+++||++++|++|||+|++++.+    ++.+++|++||||+| .|
T Consensus        81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l  156 (321)
T PTZ00082         81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL  156 (321)
T ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence            9999999999     9999999999999999999999999999999999999999754    678899999999995 89


Q ss_pred             hHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhhhc
Q 023671          190 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKA  259 (279)
Q Consensus       190 ds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~  259 (279)
                      |++|+++++|+++++++++|+++|+||||+ ++||+||++++++          .++++++++|.++++++|++|+++| 
T Consensus       157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-  234 (321)
T PTZ00082        157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-  234 (321)
T ss_pred             cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence            999999999999999999999999999998 9999999999864          1455668999999999999999987 


Q ss_pred             CCCcchHHHHHHHHHHHh
Q 023671          260 GAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       260 g~gs~~~s~A~a~~~~~~  277 (279)
                      |||+|+|++|.+++++++
T Consensus       235 gkg~t~~~ia~a~~~i~~  252 (321)
T PTZ00082        235 GTGSAYFAPAAAAIEMAE  252 (321)
T ss_pred             CCCccHHHHHHHHHHHHH
Confidence            889999999999999986

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2e-48  Score=358.07  Aligned_cols=223  Identities=29%  Similarity=0.436  Sum_probs=200.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |+|||+ |.||+++++.|+..+++.||+|+|+++  +.|.++||.|.... ...+... ++| +++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence            579998 999999999999999999999999987  78999999998642 2233322 345 57899999999999999


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHHHH
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA  199 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~la  199 (279)
                      +++|++|.|++..|++++++++++|+++||++++|++|||+|+||+++    ++.+++|++||||+ |.|||+|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999754    67789999999999 7899999999999


Q ss_pred             HHcCCCCCCCcceeecCCCCceeeeecccCCCCC-CC------CHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHH
Q 023671          200 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-SF------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNL  272 (279)
Q Consensus       200 ~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~~------~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~  272 (279)
                      +++++++++|+++|+||||+ +++|+||++++++ ++      ++.++++|.+++++++++|++.   ||+++|++|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~---kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL---KGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence            99999999999999999998 9999999999864 21      2345789999999999999995   578999999999


Q ss_pred             HHHHh
Q 023671          273 RMHAS  277 (279)
Q Consensus       273 ~~~~~  277 (279)
                      +++++
T Consensus       230 ~~~~~  234 (300)
T cd00300         230 ADIVK  234 (300)
T ss_pred             HHHHH
Confidence            99986

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=3e-48  Score=357.53  Aligned_cols=224  Identities=31%  Similarity=0.513  Sum_probs=201.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +||+|||+ |.||+.+|+.++.+++. +|+|+|+++  ..|.++|+.|...    ..+++.   ++|+ +++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence            59999998 99999999999999987 899999987  5678888887642    123332   4576 55999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      |+|.|+++|++|.|++..|.+++++++++|.+++|++++|++|||+|+||+++    ++.+|+|++||||+ |.|||+||
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999765    67789999999999 58999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHH
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR  269 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A  269 (279)
                      ++++|++|+++|++|+++|+||||+ +++|+||++++++ +    ++++++++|.++++++|++|+++| |||++.|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            9999999999999999999999999 9999999999875 2    445568999999999999999987 7899999999


Q ss_pred             HHHHHHHh
Q 023671          270 LNLRMHAS  277 (279)
Q Consensus       270 ~a~~~~~~  277 (279)
                      .+++++++
T Consensus       230 ~~~~~i~~  237 (305)
T TIGR01763       230 ASVVEMVE  237 (305)
T ss_pred             HHHHHHHH
Confidence            99999986

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=6.3e-48  Score=357.73  Aligned_cols=227  Identities=26%  Similarity=0.362  Sum_probs=197.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      ||+||||+|+||+++++.|..+++++     +|+|+|+++    ++|+++||.|...... ..+..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence            68999999999999999999988875     799999954    5789999999862111 1112223446899999999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhH
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  191 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds  191 (279)
                      |+|||.|++++++|.+++..|++++++++++|++++ |++++|++|||+|+||+++    ++.++++++++||+ |.|||
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999999765    66777777889999 89999


Q ss_pred             HHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCC-C----C----CCHHH--HHHHHHHHHhhHHHHHhhhc
Q 023671          192 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----S----FTQEE--TEYLTNRIQNGGTEVVEAKA  259 (279)
Q Consensus       192 ~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~-~----~----~~~~~--~~~i~~~v~~~~~~i~~~k~  259 (279)
                      +|||++||++++++|++|+ ++||||||+ +++|+||+++++ +    +    +++++  +++|.++++++|++|+++| 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999996 699999999 999999999997 5    2    22222  5789999999999999975 


Q ss_pred             CCCcchHHHHHHHHHHHh
Q 023671          260 GAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       260 g~gs~~~s~A~a~~~~~~  277 (279)
                       ++++.|++|.+++++++
T Consensus       234 -~~~t~~~ia~~~~~i~~  250 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMH  250 (324)
T ss_pred             -CCCHHHHHHHHHHHHHH
Confidence             36899999999999986

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=5.4e-47  Score=349.74  Aligned_cols=224  Identities=30%  Similarity=0.468  Sum_probs=201.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+|||+ |.||+++++.|+.++++.+|+|+|+++  +.+.++|+.|.... ......  ++| ++++++||+||++++
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d-~~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGD-YADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCC-HHHhCCCCEEEEccC
Confidence            59999999 999999999999999889999999987  67899999987531 223333  346 478999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~  197 (279)
                      .+++++++|.|++..|+++++++++.|++++|+++++++|||+|+||+++    ++.+|+|++||||+ |.|||+|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    66789999999999 89999999999


Q ss_pred             HHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC------------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       198 la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      +|+++++++++|+++|+||||+ +++|+||++++++            .++++++++|.++++++|++|++.|   |+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k---g~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC---CccH
Confidence            9999999999999999999998 9999999999864            1333558899999999999999954   7899


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      |++|.+++++++
T Consensus       229 ~~~a~a~~~i~~  240 (308)
T cd05292         229 YAIGLALARIVE  240 (308)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999986

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=3.3e-46  Score=346.60  Aligned_cols=227  Identities=26%  Similarity=0.371  Sum_probs=197.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccC--CCeEEEEeCCCCHHhhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~  108 (279)
                      ++.||+||||+|+||+++++.|+.+++++     ||+|+|+++    +.+.++|+.|...  ..++..   ..+++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            36799999999999999999999988775     999999954    5788899999752  123322   346779999


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHh-CCCCCCCeeee
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV  186 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~-~~~~~~kViG~  186 (279)
                      |||+||++||.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|+||+++    ++. +++|+++ ||+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~  152 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA  152 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence            99999999999999999999999999999999999999997 7999999999999999865    555 5777777 888


Q ss_pred             -cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCC----C-C----CCHHH--HHHHHHHHHhhHHH
Q 023671          187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----C-S----FTQEE--TEYLTNRIQNGGTE  253 (279)
Q Consensus       187 -t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~----~-~----~~~~~--~~~i~~~v~~~~~~  253 (279)
                       |.||++||++++|++++++|++|+ .+||||||+ +++|+||+++++    + +    +++++  +++|.++++++|++
T Consensus       153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~  231 (325)
T cd01336         153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA  231 (325)
T ss_pred             eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence             899999999999999999999997 459999999 999999999987    4 2    22322  58999999999999


Q ss_pred             HHhhhcCCCcchHHHHHHHHHHHh
Q 023671          254 VVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       254 i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      |+++|  +|+++|++|.+++++++
T Consensus       232 Ii~~~--~g~t~~~~a~~~~~i~~  253 (325)
T cd01336         232 VIKAR--KLSSAMSAAKAICDHVH  253 (325)
T ss_pred             HHHcc--ccchHHHHHHHHHHHHH
Confidence            99974  57999999999999886

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=1.3e-45  Score=340.63  Aligned_cols=226  Identities=27%  Similarity=0.426  Sum_probs=199.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~----~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      |||+|+||+|.+|++++..|+..++..+|+|+|+++    +++.++|+.|....  ...+.. .++| ++++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d-~~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSD-LSDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCC-HHHhCCCCEEEE
Confidence            699999988999999999999999989999999954    57888999986321  122322 2346 467999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      ++|.|+++|++|.|++..|+++++++++.|.+++|++++|+++||+|++|+++    ++.+++|++||||+ |.|||+|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999765    67789999999999 68999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----C--CHHHHHHHHHHHHhhHHHHHhhhcCCCcchHH
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----F--TQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  267 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s  267 (279)
                      +++||+++++++++|+++|+||||+ +++|+||++++++ +    +  .+.++++|.++++++|++|++.|   |+++|+
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence            9999999999999999999999999 9999999999865 1    1  24457899999999999999965   567899


Q ss_pred             HHHHHHHHHh
Q 023671          268 MRLNLRMHAS  277 (279)
Q Consensus       268 ~A~a~~~~~~  277 (279)
                      +|.+++++++
T Consensus       231 ~a~~~~~ii~  240 (309)
T cd05294         231 PASAISNLVR  240 (309)
T ss_pred             HHHHHHHHHH
Confidence            9999999986

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=4.3e-45  Score=336.43  Aligned_cols=227  Identities=33%  Similarity=0.570  Sum_probs=201.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      |+||+|||| |+||+++++.++..++. ||+|+|+++  +++.++|+.|....  ...+. ..++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TGTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-EeCCCH-HHHCCCCEEEEC
Confidence            469999999 99999999999999987 999999987  67888888886421  12222 224565 789999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~  195 (279)
                      +|.|+++|++|.|++.+|++++++++++|++++|++++|++|||+|++|+++    ++.+++|++||||+ |.||++||+
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999765    66789999999999 589999999


Q ss_pred             HHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHH
Q 023671          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL  270 (279)
Q Consensus       196 ~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~  270 (279)
                      ++||++++++|++|+++|+||||+ +++|+||++++++ +    ++++.+++|.+++++++++|++.+ +|+++.|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            999999999999999999999999 9999999999864 2    455567999999999999999974 67899999999


Q ss_pred             HHHHHHh
Q 023671          271 NLRMHAS  277 (279)
Q Consensus       271 a~~~~~~  277 (279)
                      +++++++
T Consensus       232 ~~~~ii~  238 (307)
T PRK06223        232 SIAEMVE  238 (307)
T ss_pred             HHHHHHH
Confidence            9998875

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=2.8e-45  Score=337.06  Aligned_cols=224  Identities=36%  Similarity=0.591  Sum_probs=199.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |+|||| |.||+++++.++..++. +|+|+|+++  +.+.++|+.|...  ....+.. .++| +++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d-~~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTND-YEDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCC-HHHhCCCCEEEEecCC
Confidence            689999 99999999999999988 999999988  5677888888642  1222322 2356 4789999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-chhHHHHHHHH
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFV  198 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~lds~R~~~~l  198 (279)
                      |+++|++|.+++.+|++++++++++|++++|++++|++|||+|++|+++    ++.+++|++||||+| .||++||++++
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999765    667899999999995 89999999999


Q ss_pred             HHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHH
Q 023671          199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLR  273 (279)
Q Consensus       199 a~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~  273 (279)
                      |++|+++|++|+++|+||||+ +++|+||++++++ +    ++++++++|.+++++++++|++.| |+|+++|++|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            999999999999999999998 9999999999964 2    455568999999999999999988 78999999999999


Q ss_pred             HHHh
Q 023671          274 MHAS  277 (279)
Q Consensus       274 ~~~~  277 (279)
                      ++++
T Consensus       231 ~i~~  234 (300)
T cd01339         231 EMVE  234 (300)
T ss_pred             HHHH
Confidence            9976

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=5e-44  Score=329.14  Aligned_cols=199  Identities=25%  Similarity=0.379  Sum_probs=176.3

Q ss_pred             EEEEEeCCC----chhHHhhhhcccC-C-CeEEEEeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHH
Q 023671           69 VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC  142 (279)
Q Consensus        69 ev~L~D~~~----~~g~~~DL~~~~~-~-~~v~~~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~  142 (279)
                      .|+|+|+++    ++|+++||.|... . ..+..   +++.+++++|||+||+|||.|+++|++|.|++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999976    6899999999862 2 22322   2354689999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHHHHHHcCCCCCCC-cceeecCCCC
Q 023671          143 EGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAG  219 (279)
Q Consensus       143 ~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~la~~l~v~~~~V-~~~ViGehg~  219 (279)
                      ++|+++ +|++++|++|||+|+||+++    ++.+++|++|+||+ |.|||+|||++||++++++|++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999999765    67789999999999 89999999999999999999999 6999999999


Q ss_pred             ceeeeecccCCC----CC-C----CCHHH--HHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          220 VTILPLLSQVKP----PC-S----FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       220 ~~~vp~~S~~~v----~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                       +++|+||++++    ++ +    +.+++  +++|.++++++|++|+++|  ||+|+||+|.+++++++
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~  233 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIR  233 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHH
Confidence             99999999999    54 2    23334  5789999999999999974  67999999999999986

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=4.3e-44  Score=341.86  Aligned_cols=225  Identities=15%  Similarity=0.133  Sum_probs=193.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCC--C--chhHHhhhhcccC-C-CeEEEEeCCCCHHhhh
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVV--N--TPGVTADISHMDT-G-AVVRGFLGQPQLENAL  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~--~--~~g~~~DL~~~~~-~-~~v~~~~~~~d~~eal  107 (279)
                      .++.+|+|+||+|++|+++.+.++...++.     .|+|+|++  +  ++|+++||.|+.. . ..+...  +++ ++++
T Consensus       121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea~  197 (452)
T cd05295         121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVAF  197 (452)
T ss_pred             CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHHh
Confidence            356799999999999999999999865432     69999994  3  7899999999862 1 234433  234 6999


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC--CceEEEecCCCCchHHHHHHHHHHhC-CCCCCCee
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLL  184 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p--~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kVi  184 (279)
                      +|||+||+++|.|+++|++|.|++..|++|+++++++|.+++|  ++++|++|||+|++|+++    ++.+ ++|++||+
T Consensus       198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rVi  273 (452)
T cd05295         198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNII  273 (452)
T ss_pred             CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEE
Confidence            9999999999999999999999999999999999999999999  899999999999999876    4555 99999999


Q ss_pred             eecchhHHHHHHHHHHHcCCCCCCC-cceeecCCCCceeeeecccCCCCC-------------C----CCHHH--HHHHH
Q 023671          185 GVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TEYLT  244 (279)
Q Consensus       185 G~t~lds~R~~~~la~~l~v~~~~V-~~~ViGehg~~~~vp~~S~~~v~~-------------~----~~~~~--~~~i~  244 (279)
                      |++.||++|++++||+++|+++++| +++||||||+ ++||+||++++++             +    +++++  .+++.
T Consensus       274 g~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~  352 (452)
T cd05295         274 AVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFV  352 (452)
T ss_pred             EecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHH
Confidence            9977889999999999999999999 5799999999 9999999999854             1    23334  36788


Q ss_pred             HHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          245 NRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       245 ~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +.|+++++   +   +|||+++|+|.|++++++
T Consensus       353 ~~v~~rg~---~---rkgsT~~siA~A~~~iv~  379 (452)
T cd05295         353 ATLKSLSS---S---LNHEAAISPAHAIATTLS  379 (452)
T ss_pred             HHHHHHHH---h---ccCChHHHHHHHHHHHHH
Confidence            89999998   3   568999999999999986

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=2.7e-42  Score=318.26  Aligned_cols=202  Identities=22%  Similarity=0.274  Sum_probs=174.4

Q ss_pred             hCCCCcEEEEEeCCC----chhHHhhhhcccCCCe--EEEEeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHH
Q 023671           63 INPLVSVLHLYDVVN----TPGVTADISHMDTGAV--VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAG  136 (279)
Q Consensus        63 ~~~~~~ev~L~D~~~----~~g~~~DL~~~~~~~~--v~~~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~  136 (279)
                      .+++  .|+|+|+++    ++|+++||.|+. .+.  ....  ++|++++++|||+||+|||.|+++|++|.|++..|++
T Consensus        13 ~~~~--~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~   87 (313)
T TIGR01756        13 NRPV--CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTP   87 (313)
T ss_pred             CCeE--EEEEecCCCccchhHhHHHHHHHhc-cccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHH
Confidence            3445  899999977    689999999997 332  2222  3577789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-ceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHHHHHHcCCCCCCCcce-e
Q 023671          137 IVRTLCEGIAKCCPN-ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP-V  213 (279)
Q Consensus       137 i~~~i~~~I~~~~p~-a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~la~~l~v~~~~V~~~-V  213 (279)
                      ++++++++|++++|+ +++|++|||+|+||+++.   ++.+++|++ +||+ |.|||+|||++||++++++|++|+.+ |
T Consensus        88 I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V  163 (313)
T TIGR01756        88 IFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV  163 (313)
T ss_pred             HHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEE
Confidence            999999999999955 789999999999997652   578999998 9999 89999999999999999999999755 9


Q ss_pred             ecCCCCceeeeecccCCC--CC-C------CCHH-HHHHHHHHHHhhHHHHHhhhcCCCcchHHHH-HHHHHHHh
Q 023671          214 VGGHAGVTILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMR-LNLRMHAS  277 (279)
Q Consensus       214 iGehg~~~~vp~~S~~~v--~~-~------~~~~-~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A-~a~~~~~~  277 (279)
                      |||||+ +++|+||++++  ++ +      ++++ .+++|.++++++|++|+++   ||+|+|+++ .+++++++
T Consensus       164 ~GeHG~-s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~~a~ai~~iv~  234 (313)
T TIGR01756       164 WGNHAE-SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEM---RGFTSAASPVKASLQHMK  234 (313)
T ss_pred             EECCCC-ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHH
Confidence            999999 99999999999  54 1      2332 3679999999999999995   578999988 59999886

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=7.4e-40  Score=295.77  Aligned_cols=181  Identities=34%  Similarity=0.516  Sum_probs=164.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCC--chhHHhhhhcccCCC-eEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           44 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~--~~~ev~L~D~~~--~~g~~~DL~~~~~~~-~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |+||||+|.+|+++++.|+..+  ...||+|+|+++  +++.++|+.|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899998999999999999999  778999999987  688999999986432 23333 25677899999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  198 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~l  198 (279)
                      .++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++    ++.+|+|++||||+|.+|+.|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    66779999999999559999999999


Q ss_pred             HHHcCCCCCCCcceeecCCCCceeeeecccCC
Q 023671          199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK  230 (279)
Q Consensus       199 a~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~  230 (279)
                      |+++++++++|+++|||+||+ +++|+||+++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~  186 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR  186 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch
Confidence            999999999999999999999 8999999876

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=5e-34  Score=235.27  Aligned_cols=139  Identities=39%  Similarity=0.613  Sum_probs=123.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |||+||||+|.||+++++.|+++++++||+|+|+++  ++|+++||+|..............+ +++++|||+||+|+|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence            699999999999999999999999999999999997  7999999999864332222222234 6899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      ++++|++|.|++..|++++++++++|.+++|+++++++|||+|+||+++    ++.+++|++|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~----~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA----QKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH----HHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH----HHhhCcCcccCcC
Confidence            9999999999999999999999999999999999999999999998654    7788999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.3e-33  Score=244.26  Aligned_cols=231  Identities=26%  Similarity=0.380  Sum_probs=202.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~-----~~ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A  110 (279)
                      ++.+|.|+||+|++|+++++.++....     .-.++|+|+.+    ++|..++|+++. .+.++....++|..++++|.
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhccC
Confidence            467999999999999999999886421     23899999987    589999999986 56555544456778999999


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecch
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  189 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~l  189 (279)
                      |+.|...+.||++||+|.|++..|++|++.-+..+++++ |+.+++++.||+|..+-++.   +++..+|.+++-.+|.|
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL  158 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL  158 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence            999999999999999999999999999999999999998 89999999999999887664   56788999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC---------CCCHHHH--HHHHHHHHhhHHHHHhh
Q 023671          190 DVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVEA  257 (279)
Q Consensus       190 ds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~---------~~~~~~~--~~i~~~v~~~~~~i~~~  257 (279)
                      |.+|+..+||.++|+..++|. ..+||+|+. ||+|+.-|++++.         .+.+..|  .++.+.|+++|..+|+.
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            999999999999999999996 889999998 9999999999952         1455566  68999999999999996


Q ss_pred             hcCCCcchHHHHHHHHHHHh
Q 023671          258 KAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       258 k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +  |.|+.+|.|.|++++++
T Consensus       238 r--k~SSA~SaA~aacDhi~  255 (332)
T KOG1496|consen  238 R--KLSSAMSAAKAACDHIR  255 (332)
T ss_pred             h--hhhhhhhHHHhHhhhhh
Confidence            4  67899999999999985

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.93  E-value=5.9e-26  Score=217.58  Aligned_cols=177  Identities=24%  Similarity=0.250  Sum_probs=133.8

Q ss_pred             cEEEEEcCCCchHH-HHHHHHHhCC--C-CcEEEEEeCCC--c---hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCE
Q 023671           42 FKVAILGAAGGIGQ-PLAMLMKINP--L-VSVLHLYDVVN--T---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        42 ~KI~IIGA~G~VG~-~la~~L~~~~--~-~~ev~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADi  112 (279)
                      +||+|||| |+.=. .+...|+...  + .+||+|+|+++  +   ...+..+.+.. ...++... |+|+++|++|||+
T Consensus         1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~-ttD~~~Al~gADf   77 (425)
T cd05197           1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEK-TMDLEDAIIDADF   77 (425)
T ss_pred             CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCCE
Confidence            59999999 66411 2233444433  2 58999999998  2   12233333332 23444433 5789999999999


Q ss_pred             EEEccCCC------------CCCCCc--------hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHH
Q 023671          113 VIIPAGVP------------RKPGMT--------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  172 (279)
Q Consensus       113 VIitag~~------------~k~g~~--------r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~  172 (279)
                      ||.+..+.            .+.|..        ..-...+|+++++++++.|+++||++|+|++|||+|+||+.+    
T Consensus        78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~----  153 (425)
T cd05197          78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV----  153 (425)
T ss_pred             EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH----
Confidence            99986432            233221        223467899999999999999999999999999999999765    


Q ss_pred             HHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeec-CCCCceeeeecccCCCCC
Q 023671          173 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVKPPC  233 (279)
Q Consensus       173 ~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViG-ehg~~~~vp~~S~~~v~~  233 (279)
                      ++.  +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| +||     |+||++++++
T Consensus       154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~G  207 (425)
T cd05197         154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYNG  207 (425)
T ss_pred             HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEECC
Confidence            554  378999999877 9999999999999999999999999 998     7899998854

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=99.93  E-value=1.1e-25  Score=216.25  Aligned_cols=166  Identities=20%  Similarity=0.259  Sum_probs=131.1

Q ss_pred             CcEEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEeCCC--ch-hHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMDT--GAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~--~L~-~~~~~-~ev~L~D~~~--~~-g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~AD  111 (279)
                      ++||+|||| |++|.+.++  .++ ..++. .||+|+|+++  ++ +... +.+...  ....+.. .++|++++++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence            369999999 999998877  555 34554 4999999987  33 3333 333321  2223332 2568889999999


Q ss_pred             EEEEccCCC-CCCC--------------CchhhH--------HHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHH
Q 023671          112 LVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  168 (279)
Q Consensus       112 iVIitag~~-~k~g--------------~~r~d~--------~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~  168 (279)
                      +||++++++ .+++              ++|.|.        +.+|++++++++++|+++||++|+|++|||+|++|+.+
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~  157 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM  157 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence            999999987 4444              456677        89999999999999999999999999999999999654


Q ss_pred             HHHHHHhCCCCCCCeeeec--chhHHHHHHHHHHHcCCCCCCCcceeecCCCC
Q 023671          169 AEVFKKAGTYDPKKLLGVT--MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG  219 (279)
Q Consensus       169 ~~~~~~~~~~~~~kViG~t--~lds~R~~~~la~~l~v~~~~V~~~ViGehg~  219 (279)
                          +   ++|+.||||+|  .+|+.   +.+|+.+|+++++|++++.|-+|-
T Consensus       158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~  200 (431)
T PRK15076        158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHM  200 (431)
T ss_pred             ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecch
Confidence                3   68889999997  47765   779999999999999999997664

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.92  E-value=1.3e-24  Score=208.06  Aligned_cols=167  Identities=21%  Similarity=0.300  Sum_probs=127.8

Q ss_pred             cEEEEEcCCCchHH-HHHHHHHhC-C--CCcEEEEEeCC-C--ch---hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCC
Q 023671           42 FKVAILGAAGGIGQ-PLAMLMKIN-P--LVSVLHLYDVV-N--TP---GVTADISHMDTGAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        42 ~KI~IIGA~G~VG~-~la~~L~~~-~--~~~ev~L~D~~-~--~~---g~~~DL~~~~~~~~v~~~~~~~d~~eal~~AD  111 (279)
                      +||+|||| |++.. .+...|+.. .  ..+||+|+|++ +  +.   ..+.++.... ...++... ++|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~~-t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVHL-TTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCC
Confidence            59999999 76633 223344442 2  35899999999 5  21   1222333322 23344332 568999999999


Q ss_pred             EEEEccCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHH
Q 023671          112 LVIIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d--------------------~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~  171 (279)
                      +||+++++++.+++++.+                    ...+|++++++++++|+++||++|+|++|||+|++|+.+   
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---  154 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---  154 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence            999999887766655544                    267899999999999999999999999999999998654   


Q ss_pred             HHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeec-CCCC
Q 023671          172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG  219 (279)
Q Consensus       172 ~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViG-ehg~  219 (279)
                       ++.+   +.||||+|.. +.|+++.+|+.+|+++++|+++|+| +|-.
T Consensus       155 -~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~~  198 (419)
T cd05296         155 -LRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHLG  198 (419)
T ss_pred             -HHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccce
Confidence             5544   6899999987 4899999999999999999999999 7743

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.87  E-value=8.5e-22  Score=189.27  Aligned_cols=168  Identities=21%  Similarity=0.205  Sum_probs=130.3

Q ss_pred             cEEEEEcCCCchHHHHHH--HHHhC-CCC-cEEEEEeCCC--chhHHhhhhccc--CCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           42 FKVAILGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~--~L~~~-~~~-~ev~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      +||+|||| |.+|++.+.  .++.. .+. .+|+|+|+++  ++....++.+..  .....+.. .++|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence            48999999 999999877  45433 332 4999999987  344444444332  11223322 256888999999999


Q ss_pred             EEccCCCCCCCCch----------------------hhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHH
Q 023671          114 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (279)
Q Consensus       114 Iitag~~~k~g~~r----------------------~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~  171 (279)
                      |++++....++.++                      .....+|++++.++++.++++||++|++++|||+++||+.+   
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---  155 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---  155 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence            99998665554443                      34567899999999999999999999999999999999654   


Q ss_pred             HHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeecCCCC
Q 023671          172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG  219 (279)
Q Consensus       172 ~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~  219 (279)
                       ++.++   .|+||+|+. +.++++.+|+.+++++++|+++++|-+|-
T Consensus       156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~  198 (423)
T cd05297         156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHM  198 (423)
T ss_pred             -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccH
Confidence             55554   799999865 78899999999999999999999997664

linked to 3D####ucture

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.85  E-value=7.8e-21  Score=182.71  Aligned_cols=168  Identities=20%  Similarity=0.239  Sum_probs=123.6

Q ss_pred             cEEEEEcCCCchHH-HHHHHHHhC--CC-CcEEEEEeCCC--c---hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCE
Q 023671           42 FKVAILGAAGGIGQ-PLAMLMKIN--PL-VSVLHLYDVVN--T---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        42 ~KI~IIGA~G~VG~-~la~~L~~~--~~-~~ev~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADi  112 (279)
                      |||+|||| |++=+ .+...|++.  .+ .+||+|+|+++  +   ...+..+.... ...+++.. |+|+++|++|||+
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~-Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVY-TTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ECCHHHHhCCCCE
Confidence            69999999 66511 223344444  23 48999999998  2   12233333322 23444433 5789999999999


Q ss_pred             EEEccCCC------------CCCCC---c-----hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHH
Q 023671          113 VIIPAGVP------------RKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  172 (279)
Q Consensus       113 VIitag~~------------~k~g~---~-----r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~  172 (279)
                      ||.+..+.            .|+|.   +     ..-...+|+++++++++.|+++||+||+|++|||+|++|+.+    
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~----  153 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL----  153 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----
Confidence            99986432            23332   1     123568999999999999999999999999999999999654    


Q ss_pred             HHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeecCCCC
Q 023671          173 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG  219 (279)
Q Consensus       173 ~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~  219 (279)
                      ++.  +|+.||||+|+-.. .++..+|+.||+++++++..+.|-+|-
T Consensus       154 ~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~  197 (437)
T cd05298         154 RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHF  197 (437)
T ss_pred             HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecch
Confidence            443  78899999998644 378889999999999999999997664

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.82  E-value=2.4e-19  Score=153.24  Aligned_cols=152  Identities=22%  Similarity=0.241  Sum_probs=103.6

Q ss_pred             EEEEEcCCCchHHHHH--HHHHhCC-C-CcEEEEEeCCC--c---hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           43 KVAILGAAGGIGQPLA--MLMKINP-L-VSVLHLYDVVN--T---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        43 KI~IIGA~G~VG~~la--~~L~~~~-~-~~ev~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      ||+|||| |++-.+..  ..+...+ + .+||+|+|+|+  +   ...+..+.... ..+++... ++|+++|++|||+|
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~~-ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVEA-TTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEEE-ESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEEE-eCCHHHHhCCCCEE
Confidence            8999999 88877643  2444433 2 46999999998  1   12233333322 23344322 56899999999999


Q ss_pred             EEccCC------------CCCCCCc----------hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHH
Q 023671          114 IIPAGV------------PRKPGMT----------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (279)
Q Consensus       114 Iitag~------------~~k~g~~----------r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~  171 (279)
                      |.+..+            |.+.|..          -.....+++|.+.++++.|+++|||||++++|||+..+|..+   
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~---  154 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL---  154 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence            998653            4455422          123567899999999999999999999999999999988544   


Q ss_pred             HHHhCCCCCCCeeeecchhHHHHHHHHHHHcCC
Q 023671          172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL  204 (279)
Q Consensus       172 ~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v  204 (279)
                       .+.  +|..|++|+|+... -+...+|+.||+
T Consensus       155 -~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  155 -SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             -HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             -HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence             443  44579999998643 477889999874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.81  E-value=3.8e-20  Score=157.51  Aligned_cols=88  Identities=35%  Similarity=0.524  Sum_probs=81.3

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----------CCCHHHHHHHHHHHHhhHHHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVV  255 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~~~~i~  255 (279)
                      |.||++||+++||+++|++|.+++++||||||+ ++||+||++++++           .++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            679999999999999999999999999999999 9999999999863           3567778999999999999999


Q ss_pred             hhhcCCCcchHHHHHHHHHHHh
Q 023671          256 EAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       256 ~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      ++|+  |+++||+|.|++++++
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~   99 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVE   99 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHH
T ss_pred             eecc--ccCcCCHHHHHHHHHH
Confidence            9883  8999999999999986

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.80  E-value=5.3e-19  Score=167.78  Aligned_cols=170  Identities=26%  Similarity=0.342  Sum_probs=123.4

Q ss_pred             CCcEEEEEcCCCchHHHHHH--HHHhCC--CCcEEEEEeCCC-chh----HHhhhhcccCCCeEEEEeCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPG----VTADISHMDTGAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~--~L~~~~--~~~ev~L~D~~~-~~g----~~~DL~~~~~~~~v~~~~~~~d~~eal~~A  110 (279)
                      ++.||+|||| |+++.+...  .|.+.+  ...||.|+|+++ ...    .+..+.... ...++... ++|+++|++||
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA   78 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA   78 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence            4569999999 888775532  343333  357999999988 222    222333332 23355543 56899999999


Q ss_pred             CEEEEccCC------------CCCCCCch--------hhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHH
Q 023671          111 DLVIIPAGV------------PRKPGMTR--------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  170 (279)
Q Consensus       111 DiVIitag~------------~~k~g~~r--------~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~  170 (279)
                      |||+.+..+            |.|+|..+        .-...++++++.+|++.|+++||+||++++|||+..+|..+  
T Consensus        79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv--  156 (442)
T COG1486          79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV--  156 (442)
T ss_pred             CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH--
Confidence            999998632            44444222        12346899999999999999999999999999999988654  


Q ss_pred             HHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCC-CCCcceeecCCCC
Q 023671          171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGGHAG  219 (279)
Q Consensus       171 ~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~-~~V~~~ViGehg~  219 (279)
                        .+.  +|.-|++|+|+..- -....+|+.|++++ ++++..+.|-+|-
T Consensus       157 --~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~  201 (442)
T COG1486         157 --RRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHM  201 (442)
T ss_pred             --HHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhh
Confidence              442  45349999998633 36788999999975 9999999996654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.95  E-value=1.9e-08  Score=94.68  Aligned_cols=115  Identities=18%  Similarity=0.303  Sum_probs=85.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch------hH-------Hhhhhccc-CCCeEEEEeCCCCHHhhh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV-------TADISHMD-TGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~------g~-------~~DL~~~~-~~~~v~~~~~~~d~~eal  107 (279)
                      |||+|+|. |.||...+..|++.|+  +|+++|+++.+      |.       ..+|.... ...+++.   |+|+++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence            79999998 9999999999999998  99999998721      11       11222222 1234554   56888999


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe--cCCCCchHHHH
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA  168 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~--TNPvd~~t~~~  168 (279)
                      +++|++|++.|.|.++..      ..+...++..++.|.+..+...+++.  |-|++....+-
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~  131 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR  131 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence            999999999999987632      23467788999999988876444443  78998877654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.94  E-value=2.8e-09  Score=91.28  Aligned_cols=117  Identities=24%  Similarity=0.369  Sum_probs=75.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch---hHHhh-hh---ccc---------CCCeEEEEeCCCCHH
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTAD-IS---HMD---------TGAVVRGFLGQPQLE  104 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~---g~~~D-L~---~~~---------~~~~v~~~~~~~d~~  104 (279)
                      ||+|||| |.+|..+|..++..|+  +|.|+|.++  ..   ....+ +.   ...         ...+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999999 9999999999999998  999999987  11   11111 11   100         0124443   35775


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCe
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  183 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kV  183 (279)
                      + +.+||+||.+.              .++.++.+++..++++.+ |++++  .||...+-..   ++.. ... .|+|+
T Consensus        75 ~-~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i~---~la~-~~~-~p~R~  132 (180)
T PF02737_consen   75 E-AVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSIS---ELAA-ALS-RPERF  132 (180)
T ss_dssp             G-GCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-HH---HHHT-TSS-TGGGE
T ss_pred             H-Hhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCHH---HHHh-ccC-cCceE
Confidence            5 45999999986              356899999999999998 56654  6887764432   2222 233 35678


Q ss_pred             eeec
Q 023671          184 LGVT  187 (279)
Q Consensus       184 iG~t  187 (279)
                      +|+-
T Consensus       133 ig~H  136 (180)
T PF02737_consen  133 IGMH  136 (180)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8873

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.87  E-value=1.1e-08  Score=94.39  Aligned_cols=141  Identities=22%  Similarity=0.288  Sum_probs=94.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--H----hhhhccc------CCCeEEEEeCCCCHHh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T----ADISHMD------TGAVVRGFLGQPQLEN  105 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~-~g~--~----~DL~~~~------~~~~v~~~~~~~d~~e  105 (279)
                      .+||+|||| |.+|+.+|+.++..|+  +|+++|+++  + ++.  .    ..+....      ....+..+..++++ .
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999999 9999999999999778  999999986  1 111  1    1111110      01111122334565 5


Q ss_pred             hhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCee
Q 023671          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  184 (279)
Q Consensus       106 al~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kVi  184 (279)
                      ++++||+||.++              .+|.++.+++..++.+++ |++++  .||.+.+.-.-+++    .. ..|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~----~~-~rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAE----AL-KRPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHH----Hh-CCchhEE
Confidence            899999999986              578899999999999998 68865  89998854322222    22 3467899


Q ss_pred             eec--c-----------------hhHHHHHHHHHHHcCCCC
Q 023671          185 GVT--M-----------------LDVVRANTFVAEVLGLDP  206 (279)
Q Consensus       185 G~t--~-----------------lds~R~~~~la~~l~v~~  206 (279)
                      |+-  +                 -++...-..+++++|-.|
T Consensus       138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~  178 (307)
T COG1250         138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP  178 (307)
T ss_pred             EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence            872  1                 144445566777777443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.80  E-value=1.8e-08  Score=86.71  Aligned_cols=124  Identities=21%  Similarity=0.312  Sum_probs=74.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc------hhHH-------hhhhccc-CCCeEEEEeCCCCHHhhh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT-------ADISHMD-TGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~------~g~~-------~DL~~~~-~~~~v~~~~~~~d~~eal  107 (279)
                      |||+|||. |+||..+|..|+..|+  +|+.+|+++.      .|..       .++.... ...+++.   ++|..+++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai   74 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI   74 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence            79999998 9999999999999998  9999999871      1110       1111111 1345665   34777889


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCchHHHHHHHHHHhCC
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKAGT  177 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~t~~~~~~~~~~~~  177 (279)
                      ++||++|+|.+.|.+.+.+      .+...+++.++.|.+.. ++.+|++= |=|++....++..++.+.++
T Consensus        75 ~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~  140 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG  140 (185)
T ss_dssp             HH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred             hccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc
Confidence            9999999999988765321      12344566666666654 34443333 67888777555566666554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.78  E-value=7.4e-08  Score=89.70  Aligned_cols=120  Identities=15%  Similarity=0.125  Sum_probs=81.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH-------h-hhhccc-----CCCeEEEEeCCCCHHhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT-------A-DISHMD-----TGAVVRGFLGQPQLENA  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~-------~-DL~~~~-----~~~~v~~~~~~~d~~ea  106 (279)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++ .....       . .+....     ...++..   +++++++
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a   80 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC   80 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence            358999999 9999999999999999  999999986 11110       0 111110     0122332   3578888


Q ss_pred             hCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      +++||+||.++              .+|.++.+++...+.+.+|... |+.||.+.+...   ++ ..... .|+|++|+
T Consensus        81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s---~l-a~~~~-~p~R~~g~  140 (321)
T PRK07066         81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLLPT---DF-YARAT-HPERCVVG  140 (321)
T ss_pred             hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHH---HH-HHhcC-CcccEEEE
Confidence            99999999986              3567888999999999986433 457888876542   22 22233 34678875

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.72  E-value=1e-07  Score=87.08  Aligned_cols=109  Identities=19%  Similarity=0.293  Sum_probs=76.3

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCCCCCC
Q 023671           46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVPRKPG  124 (279)
Q Consensus        46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~~k~g  124 (279)
                      |+||+||+|++++..|+.+|...+|..+|+........++........+.. +....++.++++++|+||++|+...-.+
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~   81 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG   81 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence            899999999999999999996669999998762211112222211101222 2223467889999999999987543333


Q ss_pred             -CchhhHHHhhHHHHHHHHHHHHHhCCCceE
Q 023671          125 -MTRDDLFNINAGIVRTLCEGIAKCCPNATV  154 (279)
Q Consensus       125 -~~r~d~~~~N~~i~~~i~~~I~~~~p~a~v  154 (279)
                       .....+...|+...+.+++...+..-+.+|
T Consensus        82 ~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlV  112 (280)
T PF01073_consen   82 DYPPEEYYKVNVDGTRNVLEAARKAGVKRLV  112 (280)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence             346678899999999999999987655443

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.71  E-value=1.5e-07  Score=86.34  Aligned_cols=118  Identities=18%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hh----hhhcccC---------CCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DISHMDT---------GAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~----DL~~~~~---------~~~v~~~~~~~d  102 (279)
                      +.||+|||+ |.+|..+|..++..|+  +|+++|+++ .  .+.  ..    .+.+...         ..+++.   ++|
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~   78 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTD   78 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCC
Confidence            349999999 9999999999999998  999999987 1  111  00    0111110         123332   457


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-C-CceEEEecCCCCchHHHHHHHHHHhCCCCC
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~  180 (279)
                      + +++++||+||.++              .++.++.+++...+++.+ + ++++  +||........+    ...... +
T Consensus        79 ~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~l----a~~~~~-~  136 (286)
T PRK07819         79 L-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMKL----AAATKR-P  136 (286)
T ss_pred             H-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcCC-C
Confidence            6 7799999999986              356788899999999997 4 5544  677776444222    223333 4


Q ss_pred             CCeeee
Q 023671          181 KKLLGV  186 (279)
Q Consensus       181 ~kViG~  186 (279)
                      +|++|+
T Consensus       137 ~r~~g~  142 (286)
T PRK07819        137 GRVLGL  142 (286)
T ss_pred             ccEEEE
Confidence            677776

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.67  E-value=2.7e-07  Score=84.35  Aligned_cols=120  Identities=21%  Similarity=0.305  Sum_probs=76.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHh----hhhc-----ccC---------CCeEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA----DISH-----MDT---------GAVVRGFLGQP  101 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~----DL~~-----~~~---------~~~v~~~~~~~  101 (279)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++ ....+.    .+.+     ...         ..++..   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            359999999 9999999999999998  999999986 111111    0110     000         123332   35


Q ss_pred             CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 023671          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (279)
Q Consensus       102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~  181 (279)
                      |+.+++++||+||++..              ++.+..+++.+++.+++++..+| ++|.+.....   ++.. .... +.
T Consensus        77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii-~sntSt~~~~---~~~~-~~~~-~~  136 (287)
T PRK08293         77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF-ATNSSTLLPS---QFAE-ATGR-PE  136 (287)
T ss_pred             CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE-EECcccCCHH---HHHh-hcCC-cc
Confidence            77778999999999862              34567778888888887543332 5677665332   2222 2222 45


Q ss_pred             Ceeee
Q 023671          182 KLLGV  186 (279)
Q Consensus       182 kViG~  186 (279)
                      |++|+
T Consensus       137 r~vg~  141 (287)
T PRK08293        137 KFLAL  141 (287)
T ss_pred             cEEEE
Confidence            67765

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.67  E-value=8.6e-08  Score=98.07  Aligned_cols=118  Identities=18%  Similarity=0.233  Sum_probs=83.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hhhh----hccc---------CCCeEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADI----SHMD---------TGAVVRGFLGQP  101 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~DL----~~~~---------~~~~v~~~~~~~  101 (279)
                      +.+||+|||| |.+|..+|..++..|+  +|+|+|+++ .  .+.  ..+.    .+..         ...+++.   ++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence            4569999999 9999999999999999  999999986 1  111  1111    1000         0123433   45


Q ss_pred             CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchH-HHHHHHHHHhCCCC
Q 023671          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV-PIAAEVFKKAGTYD  179 (279)
Q Consensus       102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t-~~~~~~~~~~~~~~  179 (279)
                      |+ +++++||+||.++              .++.++.+++..++++.+ |++++  .||.+.+-. .++    . ... .
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~ia----~-~~~-~  442 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLLA----K-ALK-R  442 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----h-hcC-C
Confidence            65 7799999999986              467899999999999998 46654  799988543 332    2 233 3


Q ss_pred             CCCeeee
Q 023671          180 PKKLLGV  186 (279)
Q Consensus       180 ~~kViG~  186 (279)
                      |+|++|+
T Consensus       443 p~r~ig~  449 (714)
T TIGR02437       443 PENFCGM  449 (714)
T ss_pred             cccEEEE
Confidence            6789988

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.66  E-value=1.1e-07  Score=97.66  Aligned_cols=118  Identities=19%  Similarity=0.222  Sum_probs=83.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hhhhhc----cc---------CCCeEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADISH----MD---------TGAVVRGFLGQP  101 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~DL~~----~~---------~~~~v~~~~~~~  101 (279)
                      +..||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  ++.  ..+..+    ..         ...+++.   ++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence            3468999999 9999999999999999  999999987 1  111  111111    00         0123443   45


Q ss_pred             CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchH-HHHHHHHHHhCCCC
Q 023671          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTV-PIAAEVFKKAGTYD  179 (279)
Q Consensus       102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t-~~~~~~~~~~~~~~  179 (279)
                      |+ +++++||+||.++              .+|.++.+++..++++++| ++++  .||.+.+-. .++    . .... 
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~-~~~~-  464 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIA----A-VSSR-  464 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----h-hcCC-
Confidence            75 6899999999986              4678999999999999995 6644  799888543 332    2 2333 


Q ss_pred             CCCeeee
Q 023671          180 PKKLLGV  186 (279)
Q Consensus       180 ~~kViG~  186 (279)
                      |+|++|+
T Consensus       465 p~r~ig~  471 (737)
T TIGR02441       465 PEKVIGM  471 (737)
T ss_pred             ccceEEE
Confidence            5789886

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.64  E-value=2.7e-07  Score=94.32  Aligned_cols=119  Identities=18%  Similarity=0.277  Sum_probs=82.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-c--hhH--Hh-hhhcc---c---------CCCeEEEEeCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PGV--TA-DISHM---D---------TGAVVRGFLGQ  100 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~-~--~g~--~~-DL~~~---~---------~~~~v~~~~~~  100 (279)
                      +.+||+|||| |.+|+.+|..++ ..|+  +|+|+|+++ .  .+.  .. .+...   .         ...+++.   +
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  376 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T  376 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence            4569999999 999999999988 4798  999999987 1  111  11 11110   0         0123433   4


Q ss_pred             CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (279)
Q Consensus       101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~  179 (279)
                      +|+ +++++||+||.++              .++.++.+++..+++++++ ++++  .||.+.+-..-++   . .. -.
T Consensus       377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la---~-~~-~~  434 (699)
T TIGR02440       377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIA---A-AA-SR  434 (699)
T ss_pred             CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH---H-hc-CC
Confidence            575 6899999999986              4578999999999999995 5544  7998885442222   2 22 24


Q ss_pred             CCCeeee
Q 023671          180 PKKLLGV  186 (279)
Q Consensus       180 ~~kViG~  186 (279)
                      |+|++|+
T Consensus       435 p~r~~g~  441 (699)
T TIGR02440       435 PENVIGL  441 (699)
T ss_pred             cccEEEE
Confidence            5788886

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.62  E-value=2.7e-07  Score=94.50  Aligned_cols=117  Identities=18%  Similarity=0.221  Sum_probs=83.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hh----hhhccc---------CCCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DISHMD---------TGAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~----DL~~~~---------~~~~v~~~~~~~d  102 (279)
                      ..||+|||| |.+|..+|..++..|+  +|+|+|+++ .  .+.  ..    .+....         ...+++.   ++|
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~  386 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLD  386 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCC
Confidence            468999999 9999999999999999  999999987 1  111  11    111110         0123443   457


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCch-HHHHHHHHHHhCCCCC
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST-VPIAAEVFKKAGTYDP  180 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~-t~~~~~~~~~~~~~~~  180 (279)
                      + +++++||+||.++              .++.++.+++..++++++| ++++  .||.+.+- +.++    . ... .|
T Consensus       387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~-~~~-~p  443 (715)
T PRK11730        387 Y-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTISISLLA----K-ALK-RP  443 (715)
T ss_pred             H-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----h-hcC-CC
Confidence            6 7799999999986              4678999999999999995 5544  79998854 3332    2 233 35


Q ss_pred             CCeeee
Q 023671          181 KKLLGV  186 (279)
Q Consensus       181 ~kViG~  186 (279)
                      +|++|+
T Consensus       444 ~r~~g~  449 (715)
T PRK11730        444 ENFCGM  449 (715)
T ss_pred             ccEEEE
Confidence            789986

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.60  E-value=1.2e-06  Score=77.18  Aligned_cols=100  Identities=20%  Similarity=0.153  Sum_probs=64.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      |||+|||++|.+|++++..|...++  +|.++|+++  ......++.+..    ....+..   + +..++++++|+||+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~-~~~ea~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---A-DNAEAAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---e-ChHHHHhcCCEEEE
Confidence            5899998449999999999999886  999999876  222222222211    0111221   1 33678999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      +...                ..+.++++.+....++.++|-++||.+.
T Consensus        75 avp~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        75 AVPW----------------DHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             ECCH----------------HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            8631                1233444445443344678888999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.60  E-value=1.4e-06  Score=81.59  Aligned_cols=169  Identities=14%  Similarity=0.040  Sum_probs=99.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhh-cc--cCCCeEEEEeC-C---CCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS-HM--DTGAVVRGFLG-Q---PQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~-~~--~~~~~v~~~~~-~---~d~~eal~~A  110 (279)
                      +++||.|+||+||+|++++..|+..++  +|+.+|+...  .....++. ..  ....++..+.+ -   .++.+.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            357999999999999999999999987  9999997541  10011111 00  00112222221 1   1234557899


Q ss_pred             CEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC------CCchHHHHHHHHHHhCCCCCCC
Q 023671          111 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPKK  182 (279)
Q Consensus       111 DiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP------vd~~t~~~~~~~~~~~~~~~~k  182 (279)
                      |+||++|+....+  .....+....|+....++++.+++....- ++++|..      .+...       .+.....|..
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~-~v~~SS~~vyg~~~~~~~-------~e~~~~~p~~  163 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSS-FTYAASSSTYGDHPDLPK-------IEERIGRPLS  163 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEeechHhhCCCCCCCC-------CCCCCCCCCC
Confidence            9999999754321  12345567889999999999998875443 3433311      01000       0001122345


Q ss_pred             eeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          183 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       183 ViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .+|.+.+...++-...++..+++...++ ..++|.+.
T Consensus       164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~  200 (348)
T PRK15181        164 PYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQ  200 (348)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence            6676655444554445666688777776 45888753

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.57  E-value=4.4e-07  Score=92.86  Aligned_cols=119  Identities=18%  Similarity=0.303  Sum_probs=83.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-c--hh--HHhhhhc----cc---------CCCeEEEEeCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADISH----MD---------TGAVVRGFLGQ  100 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~-~--~g--~~~DL~~----~~---------~~~~v~~~~~~  100 (279)
                      +.+||+|||| |.+|..+|..++ ..|+  +|+|+|+++ .  .+  ...+..+    ..         ...+++.   +
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  381 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T  381 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence            3469999999 999999999998 7798  999999976 1  11  1111110    00         0123443   4


Q ss_pred             CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (279)
Q Consensus       101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~  179 (279)
                      +|+ +++++||+||.++              .+|.++.+++..++++++ |++++  .||.+.+...-+   .. ... .
T Consensus       382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~l---a~-~~~-~  439 (708)
T PRK11154        382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQI---AA-AAA-R  439 (708)
T ss_pred             CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH---HH-hcC-c
Confidence            575 7899999999986              467899999999999998 56654  799888544222   12 233 3


Q ss_pred             CCCeeee
Q 023671          180 PKKLLGV  186 (279)
Q Consensus       180 ~~kViG~  186 (279)
                      |+|++|+
T Consensus       440 p~r~ig~  446 (708)
T PRK11154        440 PEQVIGL  446 (708)
T ss_pred             ccceEEE
Confidence            5688887

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.56  E-value=1e-06  Score=86.20  Aligned_cols=123  Identities=15%  Similarity=0.180  Sum_probs=78.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch------hH-------HhhhhcccCCCeEEEEeCCCCHHhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV-------TADISHMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~------g~-------~~DL~~~~~~~~v~~~~~~~d~~eal  107 (279)
                      +|||+|||+ |.||..+|..|+..|..-+|+.+|+++.+      |.       ..++.......++..   ++++.+++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~~i   76 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEKHV   76 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHHHH
Confidence            579999998 99999999999988643499999998721      11       011111000112333   35677789


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe--cCCCCchHHHH
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA  168 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~--TNPvd~~t~~~  168 (279)
                      ++||++|+|.++|.+.+....+ -..+...+.+.++.|.++.++..+++.  |-|+.....+.
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~  138 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE  138 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHH
Confidence            9999999999998753210000 012345677888888877654443333  78888765544

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.55  E-value=1.3e-06  Score=79.55  Aligned_cols=118  Identities=20%  Similarity=0.350  Sum_probs=77.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhH-----H-hhhhccc---------CCCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----T-ADISHMD---------TGAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~-----~-~DL~~~~---------~~~~v~~~~~~~d  102 (279)
                      ++||+|||+ |.+|..++..++..|+  +|+++|+++.   .+.     . .++....         ...+++.   ++|
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            358999999 9999999999999998  9999999871   111     0 0111110         0113333   346


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~  181 (279)
                      + +++++||+||+++              .++..+.+++.+.+.++++ ++++  +||-..+-...+    ....+. +.
T Consensus        77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~  134 (282)
T PRK05808         77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PD  134 (282)
T ss_pred             H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Cc
Confidence            5 5689999999996              2345667788888998875 5544  577776554322    222233 35


Q ss_pred             Ceeee
Q 023671          182 KLLGV  186 (279)
Q Consensus       182 kViG~  186 (279)
                      |++|+
T Consensus       135 r~ig~  139 (282)
T PRK05808        135 KVIGM  139 (282)
T ss_pred             ceEEe
Confidence            77776

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.55  E-value=9.7e-07  Score=85.56  Aligned_cols=112  Identities=14%  Similarity=0.043  Sum_probs=74.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      .|||.|+||+||||++++..|+.+|+  +|+.+|+... +....+.+......+..+.. +-+.+.+.++|+||++|+..
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa~~  195 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLACPA  195 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECceec
Confidence            48999999999999999999999998  9999997531 11111111111122332221 11234578999999999753


Q ss_pred             C--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          121 R--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       121 ~--k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .  ....+..+.+..|+....++++.+++.+.  .+|++|
T Consensus       196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S  233 (436)
T PLN02166        196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS  233 (436)
T ss_pred             cchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            2  12234467788999999999999998753  455543

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.52  E-value=1.2e-07  Score=83.25  Aligned_cols=120  Identities=23%  Similarity=0.332  Sum_probs=85.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-----hhHHhhhhccc-----------------CCCeEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMD-----------------TGAVVRG   96 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~-----~g~~~DL~~~~-----------------~~~~v~~   96 (279)
                      +.+.|+|+|| |.+|+.+|...++.|+  .|.|+|.++ +     ++....+.+..                 ...+++.
T Consensus        10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~   86 (298)
T KOG2304|consen   10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT   86 (298)
T ss_pred             cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence            4568999999 9999999999999999  999999987 1     22222222211                 0112222


Q ss_pred             EeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc-hHHHHHHHHHHh
Q 023671           97 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-TVPIAAEVFKKA  175 (279)
Q Consensus        97 ~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~-~t~~~~~~~~~~  175 (279)
                         ++|..+++.|||+||.++              -+|+.+.+++.+.+++.|+...++ .||.+.+ ++.++     ..
T Consensus        87 ---~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~il-~tNTSSl~lt~ia-----~~  143 (298)
T KOG2304|consen   87 ---STNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSSTIL-ATNTSSLSLTDIA-----SA  143 (298)
T ss_pred             ---cCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccceEE-eecccceeHHHHH-----hh
Confidence               357788899999988875              689999999999999999754433 6898874 44433     12


Q ss_pred             CCCCCCCeeee
Q 023671          176 GTYDPKKLLGV  186 (279)
Q Consensus       176 ~~~~~~kViG~  186 (279)
                      . -++.|+.|+
T Consensus       144 ~-~~~srf~Gl  153 (298)
T KOG2304|consen  144 T-QRPSRFAGL  153 (298)
T ss_pred             c-cChhhhcee
Confidence            2 346788888

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.48  E-value=1.7e-06  Score=79.16  Aligned_cols=117  Identities=14%  Similarity=0.209  Sum_probs=74.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHh-h-------hh---cccC---------CCeEEEEeCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA-D-------IS---HMDT---------GAVVRGFLGQ  100 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~-D-------L~---~~~~---------~~~v~~~~~~  100 (279)
                      .||+|||+ |.+|..++..++..|+  +|+++|+++ ....+. .       +.   +...         ..++..   +
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence            58999999 9999999999999998  999999987 111110 0       11   1000         012222   3


Q ss_pred             CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (279)
Q Consensus       101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~  179 (279)
                      +++ +++++||+||++..              .+.++.+++.+.+.+.++ ++++  +||...+...-+   .. ... .
T Consensus        78 ~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~l---a~-~~~-~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEI---AT-ALE-R  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHH---Hh-hcC-C
Confidence            455 67899999999862              234567788888888875 5544  466665443222   12 121 2


Q ss_pred             CCCeeee
Q 023671          180 PKKLLGV  186 (279)
Q Consensus       180 ~~kViG~  186 (279)
                      +.|++|+
T Consensus       136 ~~r~ig~  142 (291)
T PRK06035        136 KDRFIGM  142 (291)
T ss_pred             cccEEEE
Confidence            5677776

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.47  E-value=4.5e-06  Score=77.92  Aligned_cols=119  Identities=17%  Similarity=0.058  Sum_probs=72.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHH-hhhhcccCCCeEEE-EeCCCCHHhhhCC--CCEE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT-ADISHMDTGAVVRG-FLGQPQLENALTG--MDLV  113 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~-~DL~~~~~~~~v~~-~~~~~d~~eal~~--ADiV  113 (279)
                      .+.++|.|+||+|++|++++..|++.|.  +|+.+|+++.. ... ..+........+.. .....++.+.+++  .|+|
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   79 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV   79 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence            4567999999999999999999999997  89999976621 111 11111110001111 1111123344554  5999


Q ss_pred             EEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       114 Iitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++|+.+...  ..+....+..|+.....+++.+.+.+....++++|.
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS  127 (349)
T TIGR02622        80 FHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS  127 (349)
T ss_pred             EECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            9999854221  112345678899999999999877652334555543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.45  E-value=2.4e-06  Score=79.25  Aligned_cols=117  Identities=16%  Similarity=0.123  Sum_probs=80.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh--HHhhhhcccCCCeEEEE----eCCCCHHhhhCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTGAVVRGF----LGQPQLENALTGMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g--~~~DL~~~~~~~~v~~~----~~~~d~~eal~~AD  111 (279)
                      ..++|+|+||+||+|+.++..|+++|+  +|+--=+++  .+.  +..+|....  .+++.+    ...+.+.+++++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            457999999999999999999999999  776665554  222  344555332  123322    12245678999999


Q ss_pred             EEEEccCCCCCCCC-chhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          112 LVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       112 iVIitag~~~k~g~-~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      .|+++|....-... ...+++.-.++..+.+.+.+++.. ...=+++|+..
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~  130 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSST  130 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccH
Confidence            99999965432222 234688889999999999999987 22223345544

>PLN02427 UDP-apiose/xylose synthase

Probab=98.44  E-value=1.9e-06  Score=81.57  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=72.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFL----GQPQLENALTGMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADi  112 (279)
                      .++|||.|+||+||+|++++..|+.+ ++  +|+.+|.+.... .............++.+.    ...++.++++++|+
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~   89 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL   89 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence            45689999999999999999999987 46  899999754211 101110000011233221    11234567889999


Q ss_pred             EEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          113 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       113 VIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ||++|+.....  .....+.+..|+.....+++..++.. . .+|++|
T Consensus        90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~S  135 (386)
T PLN02427         90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFS  135 (386)
T ss_pred             EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEe
Confidence            99999854211  12223556778888888888887655 3 455554

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.44  E-value=1.6e-07  Score=85.97  Aligned_cols=121  Identities=20%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEE----EEeC----CCCHHhhhC--CCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVR----GFLG----QPQLENALT--GMD  111 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~----~~~~----~~d~~eal~--~AD  111 (279)
                      |.|+||+|++|+.++..|+..+. .+|+++|.++  ......++.......+++    .+.+    ...+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            67999999999999999998875 5999999998  334444553211111221    1111    112345667  999


Q ss_pred             EEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec----CCCCchH
Q 023671          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNSTV  165 (279)
Q Consensus       112 iVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T----NPvd~~t  165 (279)
                      +|+++|+.-.-+  .....+.+..|+--.+++++...++..+.+|.+.|    ||.++|-
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmG  139 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMG  139 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHH
Confidence            999999753211  23456778899999999999999998887777775    5665553

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.43  E-value=8.4e-07  Score=74.14  Aligned_cols=93  Identities=23%  Similarity=0.289  Sum_probs=61.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc--C------CCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T------GAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~--~------~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      ||+|+|| |..|..+|..|..+++  +|.|+++++.....+.-.+..  .      ...+..   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            8999999 9999999999999997  999999976211111111211  0      123433   468889999999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEe
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI  157 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~  157 (279)
                      ++..                ....+++++++..+-+ +..++++
T Consensus        75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred             eccc----------------HHHHHHHHHHHhhccCCCCEEEEe
Confidence            9852                2236678888887764 4445443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.41  E-value=2.3e-06  Score=81.02  Aligned_cols=170  Identities=15%  Similarity=0.059  Sum_probs=95.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE--EeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~~~d~~eal~~ADiVIita  117 (279)
                      +.|||.|+||+|++|++++..|...|+  +|..+|+.... ...   ..........  .....++.++++++|+||++|
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMS---EDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-ccc---cccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            557999999999999999999999998  99999975310 000   0000001110  000112344568999999998


Q ss_pred             CCCCCCC---CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC----CchH---HHHHHHHHHhCCCCCCCeeeec
Q 023671          118 GVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV----NSTV---PIAAEVFKKAGTYDPKKLLGVT  187 (279)
Q Consensus       118 g~~~k~g---~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv----d~~t---~~~~~~~~~~~~~~~~kViG~t  187 (279)
                      +.....+   ......+..|+.....+++.+++...+.+|...|.-+    ....   .+ .+  .......+...+|.+
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~-~E--~~~~p~~p~s~Yg~s  170 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSL-KE--SDAWPAEPQDAYGLE  170 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCc-Cc--ccCCCCCCCCHHHHH
Confidence            7432111   1123346789999999999998876554444333100    0000   00 00  000012344566665


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          188 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       188 ~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .....++-...++..+++..-++ ..++|.++
T Consensus       171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            44444443444566777666665 44788764

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.41  E-value=5.4e-06  Score=75.93  Aligned_cols=114  Identities=17%  Similarity=0.121  Sum_probs=73.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhccc-CCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD-TGAVVRGF----LGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~-~~~~v~~~----~~~~d~~eal~~ADiVI  114 (279)
                      .+||.|+||+|++|++++..|+.+|+  +|++++++... .....+.... ....++.+    .....+.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            46899999999999999999999998  89888876521 1111121110 01122221    11234567789999999


Q ss_pred             EccCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEe
Q 023671          115 IPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLI  157 (279)
Q Consensus       115 itag~~~k~-g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~  157 (279)
                      ++|+..... .....+.+..|+.....+++.+.+. ... .++++
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~  125 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT  125 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence            999754221 1122356788999999999998876 433 34443

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.41  E-value=6.4e-06  Score=76.41  Aligned_cols=176  Identities=15%  Similarity=0.058  Sum_probs=96.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADiVI  114 (279)
                      +++||.|+||+|++|++++..|+..|+  +|++++++. ......++.......+++.+.    ...++.+.++++|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            356899999999999999999999997  888777654 211111111111011222221    1123456678999999


Q ss_pred             EccCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCch-------HHHHHHHHH-----HhCCCCCC
Q 023671          115 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-------VPIAAEVFK-----KAGTYDPK  181 (279)
Q Consensus       115 itag~~~k~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~-------t~~~~~~~~-----~~~~~~~~  181 (279)
                      ++|+.......+ ..+++..|+.....+++.+.+...-..++++|.-...-       ...+.|-.+     .....++.
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~  165 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT  165 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence            999743211122 23456889999999999998764222344443211000       000000000     00012334


Q ss_pred             CeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          182 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       182 kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                      ..+|.+.+-..++-...++..+++...++ ..|+|.+
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            45665544444444455666777666666 4478875

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.39  E-value=1.7e-06  Score=85.27  Aligned_cols=104  Identities=23%  Similarity=0.327  Sum_probs=72.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--H----hhhhccc---------CCCeEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T----ADISHMD---------TGAVVRGFLGQP  101 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~-~g~--~----~DL~~~~---------~~~~v~~~~~~~  101 (279)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++  + .+.  .    ..+....         ...+++.   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            4569999999 9999999999999998  999999986  1 111  0    0111110         0122333   34


Q ss_pred             CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (279)
Q Consensus       102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t  165 (279)
                      ++ +++++||+||.+.              .++..+.+.+...+.+.+|...+ +.||.+.+-.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i  125 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLSI  125 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCH
Confidence            65 5689999999986              34567788888889998865433 4688877544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02650 dihydroflavonol-4-reductase

Probab=98.37  E-value=7.1e-06  Score=76.56  Aligned_cols=178  Identities=15%  Similarity=0.035  Sum_probs=98.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcc-cCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~-~~~~~v~~~~----~~~d~~eal~~ADi  112 (279)
                      ...++|.|+||+|++|++++..|+..|+  +|++++++.. .....++... .....+..+.    ....+.+.++++|+
T Consensus         3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~   80 (351)
T PLN02650          3 SQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG   80 (351)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence            3456999999999999999999999998  8988887651 1111122111 0011222211    11235567889999


Q ss_pred             EEEccCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCch-----HHHHHHHHH---Hh--CCCCCC
Q 023671          113 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----VPIAAEVFK---KA--GTYDPK  181 (279)
Q Consensus       113 VIitag~~~k~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~-----t~~~~~~~~---~~--~~~~~~  181 (279)
                      ||++|+.......+ ..+.+..|+.....+++.+.+...-..|+++|.....-     .+...|-.+   ..  ...++.
T Consensus        81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  160 (351)
T PLN02650         81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTG  160 (351)
T ss_pred             EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcccccc
Confidence            99999753211112 23567889999999999998765323455444321000     000000000   00  000011


Q ss_pred             CeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          182 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       182 kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      ..+|.+.+-...+-...++..|++..-++ +.|+|+..
T Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        161 WMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI  198 (351)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence            24555544444444455666777766666 55888753

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.37  E-value=5e-06  Score=77.15  Aligned_cols=113  Identities=17%  Similarity=0.212  Sum_probs=74.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHhhhhcccCCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGF----LGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g--~~~DL~~~~~~~~v~~~----~~~~d~~eal~~ADiVI  114 (279)
                      .++|.|+||+|++|++++..|+..+...+|+++|++....  ...++..    ..+..+    ....++.+++++.|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            4689999999999999999998876334899999765221  1111211    122221    11123456678999999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++||....+  ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999864322  2234567889999999999999876544 444444

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.36  E-value=5.3e-06  Score=80.59  Aligned_cols=113  Identities=16%  Similarity=0.080  Sum_probs=73.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      +.|||.|+||+||||++++..|+.+|+  +|+.+|.... +....+.+.....+++.+.. +-+..++.++|+||++|+.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~-~~~~~~~~~~~~~~~~~i~~-D~~~~~l~~~D~ViHlAa~  193 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFT-GRKENVMHHFSNPNFELIRH-DVVEPILLEVDQIYHLACP  193 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCc-cchhhhhhhccCCceEEEEC-CccChhhcCCCEEEEeeee
Confidence            347999999999999999999999998  9999986431 10011111001122333221 1123457889999999975


Q ss_pred             CC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~--k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..  ....+..+.+..|+....++++.+++...  .+|++|
T Consensus       194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S  232 (442)
T PLN02206        194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS  232 (442)
T ss_pred             cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            32  11223456788999999999999987653  455544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.36  E-value=3.4e-06  Score=77.17  Aligned_cols=100  Identities=20%  Similarity=0.251  Sum_probs=64.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hh---HHhhhhcc-----cC--------CCeEEEEeCCCCH
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHM-----DT--------GAVVRGFLGQPQL  103 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g---~~~DL~~~-----~~--------~~~v~~~~~~~d~  103 (279)
                      .||+|||+ |.+|..+|..|+..|+  +|.++|+++.  ..   ...++...     ..        ..+++.   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999999 9999999999999998  9999999861  11   00111000     00        112332   3467


Q ss_pred             HhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCc
Q 023671          104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNS  163 (279)
Q Consensus       104 ~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~  163 (279)
                      ++++++||+||.+..              ++..+.+.+...+.+.++ ++++  ++|...+
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~  120 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTM  120 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence            788999999999863              224455566667777764 4443  3555543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.36  E-value=2.5e-06  Score=78.13  Aligned_cols=101  Identities=23%  Similarity=0.285  Sum_probs=65.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH-Hh----hhh----cccC--------CCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TA----DIS----HMDT--------GAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~-~~----DL~----~~~~--------~~~v~~~~~~~d  102 (279)
                      .+||+|||+ |.+|..+|..++..|+  +|+++|+++. ... ..    .+.    ....        ..+++.   +++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence            469999999 9999999999999998  9999999861 111 11    010    0000        012332   346


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCch
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  164 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~  164 (279)
                      + +++++||+||++..              ++..+.+.+.+.+.+.+ |++++  +||.+.+-
T Consensus        78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~  123 (292)
T PRK07530         78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS  123 (292)
T ss_pred             H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC
Confidence            5 56899999999862              12344556666777776 45654  35666543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.34  E-value=3.9e-06  Score=77.44  Aligned_cols=102  Identities=24%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcc-------c----CCCeEEEEeCCCCHHhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM-------D----TGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~-------~----~~~~v~~~~~~~d~~eal  107 (279)
                      .+||+|||+ |.+|..++..|+..|+  +|+++|.++.  ......+.+.       .    ...++..   ++++.+++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence            458999999 9999999999999998  9999998761  1111111000       0    0011222   34666779


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCch
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  164 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~  164 (279)
                      ++||+||++..              .......++...+...++ +.+|  +||...+-
T Consensus        78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~  119 (311)
T PRK06130         78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLP  119 (311)
T ss_pred             ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCC
Confidence            99999999862              122345556666776664 4443  35555543

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.34  E-value=6.6e-06  Score=80.80  Aligned_cols=125  Identities=19%  Similarity=0.238  Sum_probs=90.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC----CCCHHhhhCC--CC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~--AD  111 (279)
                      ..+.|.|+||+|++|+.+...++..+ ..+|+++|.+|  ......++.+.....+++.+.+    ...+++++++  .|
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            34689999999999999999888876 46999999998  3334445554322233333221    1234567888  99


Q ss_pred             EEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec----CCCCchH
Q 023671          112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNSTV  165 (279)
Q Consensus       112 iVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T----NPvd~~t  165 (279)
                      +|+++|+.-.-|-  .+..+-...|+-..+++++...++.-+.++++.|    ||.|+|-
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmG  387 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMG  387 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhh
Confidence            9999997543332  3456778899999999999999998887777765    6776664

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.33  E-value=1.1e-05  Score=73.26  Aligned_cols=164  Identities=15%  Similarity=0.060  Sum_probs=92.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHhhhhcccCCCeEEEEe----CCCCHHhhhCC--CCEE
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL----GQPQLENALTG--MDLV  113 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~--ADiV  113 (279)
                      ||.|+||+|++|.+++..|+..+...+|+++|.....   ....++...   ..+..+.    ..+++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            5889999999999999988887633389999864311   111122111   1222211    11234556676  8999


Q ss_pred             EEccCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC------C--chHHHHHHHHHHhCCCCCCCe
Q 023671          114 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------N--STVPIAAEVFKKAGTYDPKKL  183 (279)
Q Consensus       114 Iitag~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv------d--~~t~~~~~~~~~~~~~~~~kV  183 (279)
                      |++|+....  ........+..|+.....+++.+.+...+..++.+|...      +  ..+        ......+...
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~--------e~~~~~~~~~  149 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFT--------ETTPLAPSSP  149 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcC--------CCCCCCCCCc
Confidence            999975421  112234567889999999999998865554555554311      0  011        0111223345


Q ss_pred             eeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          184 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       184 iG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                      +|.+.....++-..+++..+++..-++ ..++|..
T Consensus       150 Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       150 YSASKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            555443344444445566666655554 3466653

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.33  E-value=7e-06  Score=83.44  Aligned_cols=178  Identities=15%  Similarity=0.061  Sum_probs=107.3

Q ss_pred             cchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CC
Q 023671           24 QNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP  101 (279)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~  101 (279)
                      .+.+-||-.|...   +.|||.|+||+||+|++++..|+.. ++  +|+.+|++...-  .++..   ...++.+.+ -.
T Consensus       301 g~~~~~~~~~~~~---~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~--~~~~~---~~~~~~~~gDl~  370 (660)
T PRK08125        301 GARLNSKPACSAK---RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAI--SRFLG---HPRFHFVEGDIS  370 (660)
T ss_pred             CCEecccchhhhh---cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhh--hhhcC---CCceEEEecccc
Confidence            3457788888766   6779999999999999999999874 67  999999865210  11111   112222111 11


Q ss_pred             C----HHhhhCCCCEEEEccCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC-C-----C-chHHHH
Q 023671          102 Q----LENALTGMDLVIIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-V-----N-STVPIA  168 (279)
Q Consensus       102 d----~~eal~~ADiVIitag~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP-v-----d-~~t~~~  168 (279)
                      |    +.++++++|+||++|+....  ......+.+..|+....++++.+.+.. . .+|++|.. +     + .++   
T Consensus       371 d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~---  445 (660)
T PRK08125        371 IHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFD---  445 (660)
T ss_pred             CcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcC---
Confidence            1    34567899999999975432  222345677889999999999999875 3 34444331 1     0 010   


Q ss_pred             HHHHHH---hCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          169 AEVFKK---AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       169 ~~~~~~---~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                       |-...   ...-++...+|.+.+-..++-...++..+++...++ ..|+|.+
T Consensus       446 -E~~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        446 -EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             -ccccccccCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence             00000   000012235777655455555555677787776676 4478875

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.32  E-value=5.3e-06  Score=81.90  Aligned_cols=119  Identities=20%  Similarity=0.273  Sum_probs=76.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hh--HHhh----hhccc---------CCCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD----ISHMD---------TGAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~-~g--~~~D----L~~~~---------~~~~v~~~~~~~d  102 (279)
                      ..||+|||+ |.+|..+|..++..|+  +|+++|+++  + .+  ...+    +....         ...++..   +++
T Consensus         7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~   80 (507)
T PRK08268          7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA   80 (507)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            358999999 9999999999999999  999999987  1 11  1111    11100         0122443   346


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  181 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~  181 (279)
                      + +++++||+||.+.              .++..+.+.+...+++.+ |++++  +||.+.+-..-+    ..... .++
T Consensus        81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~l----a~~~~-~p~  138 (507)
T PRK08268         81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAI----AAALK-HPE  138 (507)
T ss_pred             H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcC-Ccc
Confidence            5 5689999999986              345677778888899887 45544  466655433211    22222 356


Q ss_pred             Ceeeec
Q 023671          182 KLLGVT  187 (279)
Q Consensus       182 kViG~t  187 (279)
                      |++|+-
T Consensus       139 r~~G~h  144 (507)
T PRK08268        139 RVAGLH  144 (507)
T ss_pred             cEEEEe
Confidence            788873

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.30  E-value=1.3e-05  Score=74.10  Aligned_cols=102  Identities=25%  Similarity=0.273  Sum_probs=65.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHh--------hhhcccC---------CCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------GAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~--------DL~~~~~---------~~~v~~~~~~~d  102 (279)
                      ++||+|||+ |.+|++++..|+..|+  +|+++|+++. .....        .+.....         ..+++.   +++
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            468999998 9999999999999998  9999999861 11100        1111110         112333   347


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      +.+++++||+|+.+..              ++....+.+...+.+..++..++ .||....
T Consensus        76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~  121 (308)
T PRK06129         76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSAL  121 (308)
T ss_pred             HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCC
Confidence            7778999999999862              12344555666677777655444 3555443

>PLN02214 cinnamoyl-CoA reductase

Probab=98.29  E-value=1.2e-05  Score=75.13  Aligned_cols=109  Identities=14%  Similarity=0.039  Sum_probs=73.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h-HHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTGAVVRGFL----GQPQLENALTGMDL  112 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g-~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADi  112 (279)
                      ++++|.|+||+|++|++++..|+.+|+  +|+.++++...  . ....+...  ...+..+.    ...++.++++++|+
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   84 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDG   84 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCE
Confidence            356899999999999999999999998  89988875421  1 11112111  11222211    12345677899999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  155 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi  155 (279)
                      ||++|+...   ....+.+..|+.....+++.+.+.....+|+
T Consensus        85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~  124 (342)
T PLN02214         85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKRVVI  124 (342)
T ss_pred             EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            999998542   2235667889999999999998765443443

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.28  E-value=7.9e-06  Score=74.10  Aligned_cols=168  Identities=17%  Similarity=0.087  Sum_probs=95.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC-CEEEEccCCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM-DLVIIPAGVPR  121 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A-DiVIitag~~~  121 (279)
                      +|.|+||+||+|++++..|++.|+  +|+.+|.........+ .+.. ...... .......+.+++. |.||++|+...
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~-~~~~d~-~~~~~~~~~~~~~~d~vih~aa~~~   76 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVE-FVVLDL-TDRDLVDELAKGVPDAVIHLAAQSS   76 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccc-eeeecc-cchHHHHHHHhcCCCEEEEccccCc
Confidence            599999999999999999999988  9999998652111111 0100 000000 0001234456677 99999998654


Q ss_pred             CCCCch---hhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHH----HHHHHHHHhCCCCCCCeeeecchhHHHH
Q 023671          122 KPGMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP----IAAEVFKKAGTYDPKKLLGVTMLDVVRA  194 (279)
Q Consensus       122 k~g~~r---~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~----~~~~~~~~~~~~~~~kViG~t~lds~R~  194 (279)
                      .++..+   .++...|+...+++++...+.... .++..|.-...-..    .+.|-.  ....| ...+|.+.+...+.
T Consensus        77 ~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~-~~v~~ss~~~~~~~~~~~~~~E~~--~~~~p-~~~Yg~sK~~~E~~  152 (314)
T COG0451          77 VPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK-RFVFASSVSVVYGDPPPLPIDEDL--GPPRP-LNPYGVSKLAAEQL  152 (314)
T ss_pred             hhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCCCceECCCCCCCCccccc--CCCCC-CCHHHHHHHHHHHH
Confidence            443322   357889999999999999983333 33333321101000    000100  01111 12456665544444


Q ss_pred             HHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671          195 NTFVAEVLGLDPRDVD-VPVVGGHAG  219 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~-~~ViGehg~  219 (279)
                      -...++..+++..-++ ..++|.+..
T Consensus       153 ~~~~~~~~~~~~~ilR~~~vyGp~~~  178 (314)
T COG0451         153 LRAYARLYGLPVVILRPFNVYGPGDK  178 (314)
T ss_pred             HHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence            4444445577887777 458887654

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.28  E-value=5.8e-06  Score=76.30  Aligned_cols=107  Identities=11%  Similarity=0.071  Sum_probs=70.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |||.|+||+|++|++++..|+..|+  +|..++++....  ..+.+... ..+.. .....++.++++++|+||++++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v-~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGA-ELVYGDLSLPETLPPSFKGVTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCC-EEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence            5899999999999999999999998  999998864211  11111110 01111 111234567899999999987543


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                      ..   ...+....|......+++.+++.+.+-+|.+
T Consensus        76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~  108 (317)
T CHL00194         76 PS---DLYNAKQIDWDGKLALIEAAKAAKIKRFIFF  108 (317)
T ss_pred             CC---CccchhhhhHHHHHHHHHHHHHcCCCEEEEe
Confidence            21   1233456688888899999988765544433

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.27  E-value=1.9e-05  Score=73.58  Aligned_cols=169  Identities=15%  Similarity=0.060  Sum_probs=95.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE----eCCCCHHhhhC--CCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENALT--GMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~~~d~~eal~--~ADiVI  114 (279)
                      |+||.|+||+|++|++++..|..+|. ..++++|..+..+....+.+......+...    ...+++.++++  +.|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            35899999999999999999998885 246677764321211112111001112111    11123344565  489999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhC-------CC-ceEEEecCCC---------CchHHHHHHHHHHh
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPV---------NSTVPIAAEVFKKA  175 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~-------p~-a~viv~TNPv---------d~~t~~~~~~~~~~  175 (279)
                      ++||.....  .......+..|+.....+++.+.+..       +. ..++.+|...         +.++        ..
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~--------E~  151 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT--------ET  151 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcC--------CC
Confidence            999864321  11234567889999999999987642       11 2444444321         0111        00


Q ss_pred             CCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       176 ~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      ....+...+|.+.+...++-...++..+++..-++ ..++|.+.
T Consensus       152 ~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        152 TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            11233445666655555555666777777665555 45778654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.26  E-value=6.5e-06  Score=75.48  Aligned_cols=101  Identities=22%  Similarity=0.304  Sum_probs=65.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHH--------hhhhcccC---------CCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT---------GAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~--------~DL~~~~~---------~~~v~~~~~~~d  102 (279)
                      .+||+|||+ |.+|..+|..++..|+  +|+++|.++.. ..+        .++.+...         ...+..   +++
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~   77 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTN   77 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCC
Confidence            358999999 9999999999999997  99999997611 110        11211100         011222   335


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCch
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  164 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~  164 (279)
                      + +++++||+||.+.              .++..+...+...+.+.. |++++  +||-..+-
T Consensus        78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~  123 (295)
T PLN02545         78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS  123 (295)
T ss_pred             H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence            4 6799999999986              223455666777777766 45544  46666543

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.26  E-value=1e-05  Score=75.44  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=69.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC-----CCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~-----~d~~eal~~ADiVI  114 (279)
                      ||||.|+||+|++|++++..|+.. ++  +|+.+|+...  ...++...   ..++.+...     ..+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            469999999999999999999875 56  9999997431  11111111   122222110     12335578999999


Q ss_pred             EccCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          115 IPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++|+....  ...+....+..|+.....+++.+++.. . .+|.+|
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~S  117 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPS  117 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEe
Confidence            99875321  122334456778888889999888754 3 455444

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.25  E-value=1.1e-05  Score=79.46  Aligned_cols=103  Identities=15%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhh--------hh---ccc--CCCeEEEEeCCCCHHhhh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------IS---HMD--TGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~D--------L~---~~~--~~~~v~~~~~~~d~~eal  107 (279)
                      +||+|||+ |.+|+.+|..|+..|+  +|.++|+++.. ....+        +.   ...  ...+++.   ++++.+++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence            58999999 9999999999999998  99999998621 11101        00   000  0011332   34677889


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t  165 (279)
                      ++||+||.+..              ++..+.+.+...+.+.+|+.. ++.||.+++..
T Consensus        79 ~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         79 AGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             cCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            99999999862              234556666677777776443 34677777554

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.23  E-value=4.1e-06  Score=63.59  Aligned_cols=94  Identities=21%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-eCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~-D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      ||+|||+ |.+|+.++..|...+ ...+|.++ ++++.  ...++.... .  +..+  ..+..+++++||+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence            7999998 999999999999888 23388866 87651  222222211 1  1111  1145788999999999872  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                        |            ..+.++++.+....++..+|-++||
T Consensus        71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence              2            1255666677555578888887876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.21  E-value=1.7e-05  Score=77.08  Aligned_cols=178  Identities=15%  Similarity=0.149  Sum_probs=99.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hh------------HHhhhh---cccCCCeEEEEeC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG------------VTADIS---HMDTGAVVRGFLG   99 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g------------~~~DL~---~~~~~~~v~~~~~   99 (279)
                      ..+++||.|+||+||+|++++..|+.+|+  +|+++|....   ..            ....+.   +.. ...++.+.+
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~  120 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVG  120 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEEC
Confidence            34567999999999999999999999997  9999985320   00            000010   000 112222211


Q ss_pred             ----CCCHHhhhC--CCCEEEEccCCCCCC-CC-ch---hhHHHhhHHHHHHHHHHHHHhCCCceEEEecC------CCC
Q 023671          100 ----QPQLENALT--GMDLVIIPAGVPRKP-GM-TR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVN  162 (279)
Q Consensus       100 ----~~d~~eal~--~ADiVIitag~~~k~-g~-~r---~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN------Pvd  162 (279)
                          ...+.++++  ++|+||++|+....+ .. +.   ...+..|+.....+++.+.+.+.+..++.+|.      |-+
T Consensus       121 Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~  200 (442)
T PLN02572        121 DICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNI  200 (442)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCC
Confidence                112334455  489999998653211 11 11   23356799999999999998876544544331      110


Q ss_pred             chH--HH-HHHHHHHh---CCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          163 STV--PI-AAEVFKKA---GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       163 ~~t--~~-~~~~~~~~---~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .+.  ++ ..+.....   .-..+...+|.+.+-...+-...++..|++..-++ ..|+|.+.
T Consensus       201 ~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        201 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             CCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence            000  00 00000000   01223457888765445555566777788777776 55889764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.21  E-value=3.1e-05  Score=74.44  Aligned_cols=119  Identities=24%  Similarity=0.327  Sum_probs=74.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----------------CCCeEEEEeCCCCHHh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN  105 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~~~d~~e  105 (279)
                      |||+|||. |.+|..+|..|+..|+  +|+++|+++.+  ..++....                ...+++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            58999998 9999999999999998  99999997621  11122110                0112332   346667


Q ss_pred             hhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCchHHHHHHHHHH
Q 023671          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  174 (279)
Q Consensus       106 al~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~t~~~~~~~~~  174 (279)
                      ++++||+||++.+.|.....      ..+...+.+.++.+.+.. ++.+++.. |-|.+....+...+..+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            89999999999987754321      123444556666666553 45554443 45666555554344433

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.20  E-value=1.3e-05  Score=73.15  Aligned_cols=109  Identities=17%  Similarity=0.219  Sum_probs=71.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |||.|+||+|++|++++..|+..|+  +|+++|++....  .++.+... ..+.. .....++.++++++|+||++++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            4899999999999999999999997  999999865211  11111110 01111 111123556788999999998753


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  155 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi  155 (279)
                      .....+..+....|+.....+++.+.+.....+|.
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~  110 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVY  110 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            22233445677889999999999888765443443

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=98.18  E-value=2.8e-05  Score=72.39  Aligned_cols=175  Identities=14%  Similarity=0.086  Sum_probs=95.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE----eCCCCHHhhhC--CCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENALT--GMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~~~d~~eal~--~ADiVIi  115 (279)
                      |||.|+||+|++|++++..|+..|. ..++.+|.....+....+.+......+..+    ...+++.++++  ++|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999998875 246667754311111111111001112211    11123344554  4899999


Q ss_pred             ccCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhC-------CC-ceEEEecCCCCchHHHH--H--------HHHHHh
Q 023671          116 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPVNSTVPIA--A--------EVFKKA  175 (279)
Q Consensus       116 tag~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~-------p~-a~viv~TNPvd~~t~~~--~--------~~~~~~  175 (279)
                      +|+....  ......+.+..|+.....+++.+.++.       .. ..++.+|-.. +.....  -        ..+.+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~E~  158 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLFTET  158 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCcccc
Confidence            9986421  112235678899999999999998751       11 2344443211 000000  0        000001


Q ss_pred             CCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       176 ~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      ..+.+...+|.+.....++-..+++.++++...++ ..|+|++.
T Consensus       159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~  202 (352)
T PRK10084        159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH  202 (352)
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence            12334567777665555555556777787766665 44888763

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.14  E-value=3.1e-05  Score=74.09  Aligned_cols=113  Identities=19%  Similarity=0.233  Sum_probs=68.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc------------c--CCCeEEEEeCCCCHHhhh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------D--TGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~------------~--~~~~v~~~~~~~d~~eal  107 (279)
                      |||+|||+ |.||..+|..++. |+  +|+.+|+++.+  ...+...            .  ...++..   +.+..++.
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~~---t~~~~~~~   71 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFNA---TLDKNEAY   71 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEEE---ecchhhhh
Confidence            58999998 9999999977764 76  99999998621  1111110            0  0112222   33556778


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE-EecCCCCchHHHH
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN-LISNPVNSTVPIA  168 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi-v~TNPvd~~t~~~  168 (279)
                      ++||+||++.+.|.......     .+...+++.++.|.+..|+.+++ -.|-|.+..-.+.
T Consensus        72 ~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~  128 (388)
T PRK15057         72 RDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMH  128 (388)
T ss_pred             cCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHH
Confidence            99999999987663221111     23344555556555544555444 3467777665544

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.14  E-value=5.2e-05  Score=69.49  Aligned_cols=162  Identities=16%  Similarity=0.097  Sum_probs=106.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEE-EeCCCCHHhhh--CCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRG-FLGQPQLENAL--TGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal--~~ADiVIita  117 (279)
                      |+|.|+|++|++|||.+..|++.|+  +++++|... -...+.+-..   ...+.+ +....-+.+.+  ...|.||+.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~---~~f~~gDi~D~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQ---FKFYEGDLLDRALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhcc---CceEEeccccHHHHHHHHHhcCCCEEEECc
Confidence            5899999999999999999999999  999999865 1111111110   011111 00000122222  4789999998


Q ss_pred             CCCCCCCC---chhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-----CCCC-chHHHHHHHHHHhCCCCCCCeeeecc
Q 023671          118 GVPRKPGM---TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-----NPVN-STVPIAAEVFKKAGTYDPKKLLGVTM  188 (279)
Q Consensus       118 g~~~k~g~---~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-----NPvd-~~t~~~~~~~~~~~~~~~~kViG~t~  188 (279)
                      |...- |+   ..+.++..|+--...+++.+.+.+.+.+|+..|     +|.. .++    |    ..-..|.+-+|-+.
T Consensus        76 a~~~V-gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~----E----~~~~~p~NPYG~sK  146 (329)
T COG1087          76 ASISV-GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPIS----E----TSPLAPINPYGRSK  146 (329)
T ss_pred             ccccc-chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccC----C----CCCCCCCCcchhHH
Confidence            75321 22   346788999999999999999999887765442     4433 221    1    12344678889888


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCcce-eecCC
Q 023671          189 LDVVRANTFVAEVLGLDPRDVDVP-VVGGH  217 (279)
Q Consensus       189 lds~R~~~~la~~l~v~~~~V~~~-ViGeh  217 (279)
                      |-+.++.+-+++..+....-++-+ +.|-|
T Consensus       147 lm~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         147 LMSEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            888888888888888665555433 66666

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.12  E-value=0.00011  Score=74.67  Aligned_cols=180  Identities=14%  Similarity=0.012  Sum_probs=95.4

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC---HHhhh--CCCC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TGMD  111 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal--~~AD  111 (279)
                      |-+++||.|+||+||+|++++..|+..+...+|+.+|..........+........++.+.+ -.|   +.+.+  .++|
T Consensus         3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            45678999999999999999999988743338999997431111111111101122332211 112   11222  6899


Q ss_pred             EEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHH-H--HHHhCCCCCCCeeee
Q 023671          112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE-V--FKKAGTYDPKKLLGV  186 (279)
Q Consensus       112 iVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~-~--~~~~~~~~~~kViG~  186 (279)
                      +||++|+......  ....++...|+.....+++.+++.+.-..+|.+|.-. +....-.. .  ........+...+|.
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~-vyg~~~~~~~~~~~E~~~~~p~~~Y~~  161 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDE-VYGETDEDADVGNHEASQLLPTNPYSA  161 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchH-HhCCCccccccCccccCCCCCCCCcHH
Confidence            9999998643211  1234567889999999999998876323445444210 00000000 0  000001112344555


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      +.+...++-...++..+++..-++ ..|+|.+.
T Consensus       162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            554444444444555666655555 44777653

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.09  E-value=7.8e-05  Score=68.58  Aligned_cols=116  Identities=18%  Similarity=0.118  Sum_probs=72.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhc-ccCCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISH-MDTGAVVRGF----LGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~-~~~~~~v~~~----~~~~d~~eal~~ADiVI  114 (279)
                      .++|.|+||+|++|++++..|+..|+  +|++.+++... .....+.. .....++..+    ....++.+++++.|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            45899999999999999999999998  88888766521 11111111 0101122221    11223456678999999


Q ss_pred             EccCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          115 IPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~k~-g-~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++|+..... . ......+..|+.....+++.+.+......|+++|
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S  128 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS  128 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence            999854211 1 1123566789999999999888753223444443

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=98.07  E-value=3.3e-05  Score=71.66  Aligned_cols=112  Identities=16%  Similarity=0.006  Sum_probs=70.4

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcc--cCCCeEEEEe----CCCCHHhhh
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTGAVVRGFL----GQPQLENAL  107 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~--~~~~~v~~~~----~~~d~~eal  107 (279)
                      |+.+.++|.|+||+|++|++++..|+..|+  +|+++|.++.   ......+...  .....+....    ...++.+++
T Consensus         2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   79 (340)
T PLN02653          2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL   79 (340)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence            567778999999999999999999999998  9999987541   1111111100  0011122211    111233445


Q ss_pred             CC--CCEEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 023671          108 TG--MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP  150 (279)
Q Consensus       108 ~~--ADiVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p  150 (279)
                      ++  .|+||++|+......  ......+..|+.....+++.+.+...
T Consensus        80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence            54  599999998643211  12234456788888999999988764

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=98.07  E-value=4.2e-05  Score=71.47  Aligned_cols=174  Identities=18%  Similarity=0.090  Sum_probs=93.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENALTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiV  113 (279)
                      ..|||.|+||+|++|++++..|+..|+  +|++++.+....  ...++..   ...+..+..    ...+.+++++.|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            357999999999999999999999997  899888754211  1112211   122332211    11244567889999


Q ss_pred             EEccCCCCCC---C-Cchhh-----HHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH--------HHHHHHH----
Q 023671          114 IIPAGVPRKP---G-MTRDD-----LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV--------PIAAEVF----  172 (279)
Q Consensus       114 Iitag~~~k~---g-~~r~d-----~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t--------~~~~~~~----  172 (279)
                      |++|+.....   . .+..+     .+..|+.....+++.+.+...-..++++|.-.-...        ....|-.    
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~  163 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI  163 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence            9999864211   1 11122     233445778888888876532224444432110000        0000000    


Q ss_pred             HH-hCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          173 KK-AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       173 ~~-~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .. ....++.-.+|.+.+...++-...++..+++..-++ ..|+|.+.
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  211 (353)
T PLN02896        164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFL  211 (353)
T ss_pred             HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCc
Confidence            00 000112235666655555555556677777666665 44777653

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=98.06  E-value=5.9e-05  Score=68.87  Aligned_cols=108  Identities=11%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC-HHhhh-----CCCCEEEEcc
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA  117 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d-~~eal-----~~ADiVIita  117 (279)
                      |.|+||+|++|++++..|+..|+ ..+.++|..........+.+.+. .....   ..+ +.+.+     .++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence            68999999999999999998885 35667786542111011111110 00000   001 11222     3699999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +.+..........+..|+....++++.+.+...  .+|..|
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S  115 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence            854333333445678899999999999987653  344443

>PLN02778 3,5-epimerase/4-reductase

Probab=98.06  E-value=6.3e-05  Score=69.08  Aligned_cols=95  Identities=22%  Similarity=0.194  Sum_probs=64.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIit  116 (279)
                      .+.|||.|+||+||+|++++..|..+|+  +|.+...+        +.+..            .+..+++  +.|+||++
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~~------------~v~~~l~~~~~D~ViH~   64 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENRA------------SLEADIDAVKPTHVFNA   64 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCHH------------HHHHHHHhcCCCEEEEC
Confidence            3457999999999999999999999987  77654221        11100            0112222  68999999


Q ss_pred             cCCCCCCC-----CchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          117 AGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       117 ag~~~k~g-----~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                      |+....+.     ....+.+..|+.....+++.+++.... ++++
T Consensus        65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~  108 (298)
T PLN02778         65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNY  108 (298)
T ss_pred             CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEE
Confidence            98643221     234567889999999999999987643 3443

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.05  E-value=4.9e-05  Score=70.10  Aligned_cols=101  Identities=22%  Similarity=0.342  Sum_probs=64.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhccc------CCCeEEEEeCCCCHHhhhCCCCE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------TGAVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~------~~~~v~~~~~~~d~~eal~~ADi  112 (279)
                      ||||+|||+ |.+|+.++..|...++  +|.++|+++.  .....+..+..      ....+..   +++..++++++|+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            469999998 9999999999999988  8999999752  11111100000      0012222   2356677899999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~  163 (279)
                      ||++...                ..++++++.+.+.. |+.+++..+|-++.
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            9998631                12344555555553 56777777766553

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.05  E-value=6.7e-05  Score=63.06  Aligned_cols=91  Identities=24%  Similarity=0.292  Sum_probs=64.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-C---CCHHhhhCCCCEEEEccCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~---~d~~eal~~ADiVIitag~  119 (279)
                      |.|+||+|++|..++..|+.+++  +|.++-+++.+  ..+      ...++.+.+ .   +++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~--~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSK--AED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGG--HHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchh--ccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999996  99999876521  121      122332211 1   2346789999999999975


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  155 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi  155 (279)
                      +.+           .....+.+++.+++....-+++
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~~~v~   95 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVKRVVY   95 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSSEEEE
T ss_pred             hcc-----------ccccccccccccccccccccee
Confidence            533           1677888899988876443333

...

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=98.05  E-value=4.6e-05  Score=70.34  Aligned_cols=113  Identities=18%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC--CCCEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV  113 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~--~ADiV  113 (279)
                      |||.|+||+|++|++++..|+..|+  +|+++|...  .......+.+.. ...+..+. .-.|   +.++++  ++|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV   77 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence            5899999999999999999999987  999998643  111111111111 01111111 1122   233444  68999


Q ss_pred             EEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       114 Iitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |++|+.....  .....+.+..|+.....+++.+++..... ++.+|
T Consensus        78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  123 (338)
T PRK10675         78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN-LIFSS  123 (338)
T ss_pred             EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEec
Confidence            9998764321  12235678889999999999988765433 44443

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.05  E-value=8.3e-05  Score=71.69  Aligned_cols=110  Identities=22%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----------------CCCeEEEEeCCCCHH
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLE  104 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~~~d~~  104 (279)
                      ++||+|||. |.+|.++|..|+..|+  +|+.+|+++.+-..  +....                ....+..   +++  
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~--   72 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT--   72 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc--
Confidence            579999998 9999999999999998  99999998621111  11110                0011221   122  


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCchHHHH
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIA  168 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~t~~~  168 (279)
                        .++||+||++.+.|.+...      ..+...+.+.++.|.++. ++.+||.- |.|....-.+.
T Consensus        73 --~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~  130 (415)
T PRK11064         73 --PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMA  130 (415)
T ss_pred             --cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHH
Confidence              3589999999988754321      123445556666776665 44554443 56776655443

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.04  E-value=0.00012  Score=67.31  Aligned_cols=106  Identities=16%  Similarity=0.112  Sum_probs=67.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcc-cCCCeEEEEe----CCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~-~~~~~v~~~~----~~~d~~eal~~ADiVI  114 (279)
                      .++|.|+||+|++|++++..|+..|+  +|++..++.. ......+... .....+..+.    ....+.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            35999999999999999999999998  8886655442 1111222111 0011223221    1123556788999999


Q ss_pred             EccCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHh
Q 023671          115 IPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKC  148 (279)
Q Consensus       115 itag~~~k~-g~~r~d~~~~N~~i~~~i~~~I~~~  148 (279)
                      ++|+..... .....+++..|+.....+++.+.+.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            999853211 1122345778999999999988765

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.03  E-value=2.5e-05  Score=71.56  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=64.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~  119 (279)
                      |||.|+||+||+|++++..|...|   +|+.+|.... ....|+.+.            ..+.+.++  +.|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSNP------------EGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999998877   5777876431 001122211            12334555  58999999976


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....  ..........|+.....+++.+.+...  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            4321  112233456899999999999988653  444443

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.02  E-value=3.8e-05  Score=68.94  Aligned_cols=99  Identities=21%  Similarity=0.258  Sum_probs=67.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP  123 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~k~  123 (279)
                      |.|+||+|++|++++..|+..|+  +|+.++++.......  ..    ..+..... ....++++++|+||++++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            56999999999999999999987  999999876211000  00    00111111 12356789999999999865432


Q ss_pred             C-C---chhhHHHhhHHHHHHHHHHHHHhCCC
Q 023671          124 G-M---TRDDLFNINAGIVRTLCEGIAKCCPN  151 (279)
Q Consensus       124 g-~---~r~d~~~~N~~i~~~i~~~I~~~~p~  151 (279)
                      + .   ...++...|+...+.+++.+.+....
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  103 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK  103 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence            2 1   22456677999999999999987643

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.01  E-value=6.9e-05  Score=65.43  Aligned_cols=96  Identities=19%  Similarity=0.261  Sum_probs=65.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      ||+++|+|+ |.+|+.++..+...++  ||.+-..+..+.....-..  ..+.++.   . ..++|.+.+|+||.+..  
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~--l~~~i~~---~-~~~dA~~~aDVVvLAVP--   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAA--LGPLITG---G-SNEDAAALADVVVLAVP--   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHh--hcccccc---C-ChHHHHhcCCEEEEecc--
Confidence            579999998 9999999999999998  9888866552221111111  1223333   2 34689999999999863  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                                    .+-+.++++.+...-.+-++|-.|||.
T Consensus        70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          70 --------------FEAIPDVLAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             --------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence                          223445556666544477888889995

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.01  E-value=0.00012  Score=70.96  Aligned_cols=119  Identities=14%  Similarity=0.141  Sum_probs=71.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC------------CCeEEEEeCCCCHHhh
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENA  106 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~------------~~~v~~~~~~~d~~ea  106 (279)
                      .++|||+|||. |+||..+|..|+. ++  +|+.||+++.  .+..|.....            ...+..   +++. ++
T Consensus         4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~   73 (425)
T PRK15182          4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSEI-EK   73 (425)
T ss_pred             CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HH
Confidence            45689999998 9999999998776 55  9999999862  1222231110            011222   2343 57


Q ss_pred             hCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEE-ecCCCCchHHHHHHHHH
Q 023671          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL-ISNPVNSTVPIAAEVFK  173 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv-~TNPvd~~t~~~~~~~~  173 (279)
                      +++||++|++.+.|.+....      .+..-+..-.+.|.++. +..++|+ .|-|.+....++...+.
T Consensus        74 ~~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~  136 (425)
T PRK15182         74 IKECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA  136 (425)
T ss_pred             HcCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence            89999999999988643211      12333444455555554 3444433 46777765544333333

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.00  E-value=3.7e-05  Score=64.51  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |+||++||. |.+|+.++..|...|+  +|..||+++  ....++.+..    .+.   .+++.++++++|+||.+..  
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~---~~s~~e~~~~~dvvi~~v~--   66 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEV---ADSPAEAAEQADVVILCVP--   66 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEE---ESSHHHHHHHBSEEEE-SS--
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhh---hhhhhhHhhcccceEeecc--
Confidence            579999998 9999999999999998  999999864  2223333322    232   2357888999999999852  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHH--HHHhC-CCceEEE
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEG--IAKCC-PNATVNL  156 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~--I~~~~-p~a~viv  156 (279)
                                   +.+.++++...  +.... +..++|.
T Consensus        67 -------------~~~~v~~v~~~~~i~~~l~~g~iiid   92 (163)
T PF03446_consen   67 -------------DDDAVEAVLFGENILAGLRPGKIIID   92 (163)
T ss_dssp             -------------SHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred             -------------cchhhhhhhhhhHHhhccccceEEEe
Confidence                         23445666665  55544 4444444

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02583 cinnamoyl-CoA reductase

Probab=97.99  E-value=0.00015  Score=66.37  Aligned_cols=105  Identities=14%  Similarity=0.099  Sum_probs=68.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch----hHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFL----GQPQLENALTGMDL  112 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~----g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADi  112 (279)
                      .++|.|+||+|++|++++..|+.+|+  +|++.+++...    ....++...  ...+..+.    ...++.+++.++|.
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~   81 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSG   81 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCE
Confidence            35899999999999999999999998  99888764311    111222111  11222211    11235678899999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                      |+++++.+........+++..|+.....+++.+.+..
T Consensus        82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~  118 (297)
T PLN02583         82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD  118 (297)
T ss_pred             EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9987654422111234678889999999999988763

>PRK06194 hypothetical protein; Provisional

Probab=97.98  E-value=0.00015  Score=65.38  Aligned_cols=158  Identities=20%  Similarity=0.163  Sum_probs=84.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------  108 (279)
                      +++|.|+||+|++|++++..|+.+|.  +|+++|++.  ......++...  ..++..+. ..+|   +.+.++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999997  999999875  22222333321  12232221 1122   222232      


Q ss_pred             -CCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCC-----ceEEEecCCCCchHHHHHHHH
Q 023671          109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPN-----ATVNLISNPVNSTVPIAAEVF  172 (279)
Q Consensus       109 -~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~-----a~viv~TNPvd~~t~~~~~~~  172 (279)
                       ..|+||++||.....   ..+..   ..+..|+.    +.+.+.+.+.+.+.+     +.++++|.....         
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~---------  152 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL---------  152 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence             469999999874321   11112   23455554    444455556555432     556555532211         


Q ss_pred             HHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          173 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       173 ~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                         .+.+..-.++.+..-...+-..+++.++.....+++..+
T Consensus       153 ---~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v  191 (287)
T PRK06194        153 ---LAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVL  191 (287)
T ss_pred             ---cCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence               122333345554322233445556666655545544333

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.95  E-value=8.1e-05  Score=68.77  Aligned_cols=78  Identities=23%  Similarity=0.301  Sum_probs=57.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      .|||+|||+ |.+|.+++..|...|+  +|.++|+++.                      +++.++++++|+||++..  
T Consensus         4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp--   56 (308)
T PRK14619          4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS--   56 (308)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC--
Confidence            469999998 9999999999999998  9999998641                      134577889999998852  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCceEEEecC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISN  159 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TN  159 (279)
                                    ...++++++.+..+  .++.+++..|+
T Consensus        57 --------------~~~~~~v~~~l~~~~~~~~~ivi~~s~   83 (308)
T PRK14619         57 --------------MKGVRPVAEQVQALNLPPETIIVTATK   83 (308)
T ss_pred             --------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence                          02344555666543  35667777676

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.95  E-value=9.1e-05  Score=70.28  Aligned_cols=82  Identities=17%  Similarity=0.328  Sum_probs=57.7

Q ss_pred             hhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCc---hhHHhhhhcc--cC-----
Q 023671           26 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHM--DT-----   90 (279)
Q Consensus        26 ~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~-----~~ev~L~D~~~~---~g~~~DL~~~--~~-----   90 (279)
                      |+|.|.-|...      ||+|||+ |.-|+++|..|..++.     ..+|.|+.+++.   +..+.++.+.  +.     
T Consensus         2 ~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~   74 (365)
T PTZ00345          2 SLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG   74 (365)
T ss_pred             cchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC
Confidence            57777766665      9999999 9999999999998761     238999988762   1234444432  11     


Q ss_pred             ---CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           91 ---GAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        91 ---~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                         ..++..   ++|+.+++++||+||++.
T Consensus        75 ~~Lp~ni~~---tsdl~eav~~aDiIvlAV  101 (365)
T PTZ00345         75 IKLPDNIVA---VSDLKEAVEDADLLIFVI  101 (365)
T ss_pred             CcCCCceEE---ecCHHHHHhcCCEEEEEc
Confidence               123333   357788999999999975

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.94  E-value=6.8e-05  Score=68.57  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=70.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHh---hhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~---DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|+|+ |.+|..++..|...|+  +|.++++.+ .+....   .+........+.. ...++..+..+++|+||++.
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVPG-PVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEecc-eeecCHHHccCCCCEEEEEe
Confidence            58999999 9999999999999887  899999822 111110   0110000000111 01234445568999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      ...                -+.++++.+... .++.+|+.+.|.++....+     .+  .+|++++++
T Consensus        77 k~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l-----~~--~~~~~~v~~  122 (305)
T PRK12921         77 KAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL-----EP--YFGRERVLG  122 (305)
T ss_pred             ccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHH-----HH--hCCcccEEE
Confidence            322                133455555554 3567788889998765432     22  256667774

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.94  E-value=9.6e-05  Score=68.71  Aligned_cols=154  Identities=13%  Similarity=0.028  Sum_probs=85.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHhhhhc-c--cCCCeEEEEeC-CC---CHHhhhCC--
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISH-M--DTGAVVRGFLG-QP---QLENALTG--  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---g~~~DL~~-~--~~~~~v~~~~~-~~---d~~eal~~--  109 (279)
                      +||.|+||+|++|++++..|+..|+  +|+++|++...   .....+.. .  .....++.+.+ -.   .+.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999998  99999976421   11111110 0  00112222111 11   23445664  


Q ss_pred             CCEEEEccCCCCCC-CC-chhhHHHhhHHHHHHHHHHHHHhCC-C-ceEEEecC------CCC-chHHHHHHHHHHhCCC
Q 023671          110 MDLVIIPAGVPRKP-GM-TRDDLFNINAGIVRTLCEGIAKCCP-N-ATVNLISN------PVN-STVPIAAEVFKKAGTY  178 (279)
Q Consensus       110 ADiVIitag~~~k~-g~-~r~d~~~~N~~i~~~i~~~I~~~~p-~-a~viv~TN------Pvd-~~t~~~~~~~~~~~~~  178 (279)
                      .|+||++|+..... .. .....+..|+.....+++.+.+.+- + ..++++|.      +.+ ..+        ....+
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~--------E~~~~  150 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQN--------ETTPF  150 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCC--------CCCCC
Confidence            59999999864321 11 1233445677788889998887652 2 24444332      111 000        11123


Q ss_pred             CCCCeeeecchhHHHHHHHHHHHcCCC
Q 023671          179 DPKKLLGVTMLDVVRANTFVAEVLGLD  205 (279)
Q Consensus       179 ~~~kViG~t~lds~R~~~~la~~l~v~  205 (279)
                      .+...+|.+.+...++-...++..+++
T Consensus       151 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~  177 (343)
T TIGR01472       151 YPRSPYAAAKLYAHWITVNYREAYGLF  177 (343)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhCCc
Confidence            344566666555555555556666654

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.94  E-value=0.00014  Score=73.37  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=69.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC-CC--------HHhhhCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ--------LENALTGM  110 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~--~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~-~d--------~~eal~~A  110 (279)
                      |||.|+||+|++|++++..|+.  .+.  +|++++++.......++.......+++.+.+. .|        ..+.++++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~   78 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDI   78 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCC
Confidence            5899999999999999999984  555  99999986522221122111000122221110 01        11234899


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                      |+||++|+... ...+..+....|+...+.+++.+.+.....++.+
T Consensus        79 D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~  123 (657)
T PRK07201         79 DHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAATFHHV  123 (657)
T ss_pred             CEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEE
Confidence            99999998542 2233455677899999999999887654444443

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.93  E-value=9.3e-05  Score=73.71  Aligned_cols=116  Identities=13%  Similarity=0.057  Sum_probs=72.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhc-----cc--CCCeEEEEe----CCCCHHhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-----MD--TGAVVRGFL----GQPQLENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~-----~~--~~~~v~~~~----~~~d~~eal  107 (279)
                      .+.|.|+||+|++|..++..|+..|+  +|++++++..  ......+.+     ..  ...++..+.    ...++.+++
T Consensus        80 gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         80 EDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            45799999999999999999999998  9999998762  111111211     00  011222211    112344568


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .++|+||+++|........-...+..|......+++.+.+..-..+|++.|
T Consensus       158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS  208 (576)
T PLN03209        158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS  208 (576)
T ss_pred             cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence            899999999986533211122345667888888999888765444444333

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.93  E-value=8.5e-05  Score=69.06  Aligned_cols=69  Identities=26%  Similarity=0.464  Sum_probs=51.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc--c--C------CCeEEEEeCCCCHHhhhCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--T------GAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~--~--~------~~~v~~~~~~~d~~eal~~A  110 (279)
                      ++||+|+|+ |.=|.++|..|...++  +|.|+.+++  ..+.++...  +  .      .+.++.   ++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence            469999999 9999999999999997  999999876  222223322  1  1      122332   56899999999


Q ss_pred             CEEEEcc
Q 023671          111 DLVIIPA  117 (279)
Q Consensus       111 DiVIita  117 (279)
                      |+|++..
T Consensus        73 d~iv~av   79 (329)
T COG0240          73 DIIVIAV   79 (329)
T ss_pred             CEEEEEC
Confidence            9999975

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.91  E-value=0.00013  Score=67.97  Aligned_cols=104  Identities=20%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHh---hhhcccCCC-eE--EEEeCCCCHHhhhCCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA---DISHMDTGA-VV--RGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~---DL~~~~~~~-~v--~~~~~~~d~~eal~~ADiV  113 (279)
                      +|||+|||+ |.+|+.++..|...|+  +|.++|+++. .....   .+.+..... ..  ..+..+++. ++++++|+|
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            579999999 9999999999999998  9999998541 11000   000000000 00  001113354 678999999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCch
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST  164 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~  164 (279)
                      |++...+.                ..++++.+... .++.+|+..+|..+..
T Consensus        78 il~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         78 LVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             EEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            99873221                12334455554 3667777788987754

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.89  E-value=0.00021  Score=65.23  Aligned_cols=102  Identities=21%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC---CCeEEE-EeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GAVVRG-FLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~---~~~v~~-~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|+|+ |.+|+.++..|.+.|+  +|.++|+++..-.  .+.....   ...... ....++..+ .+++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            58999999 9999999999999887  9999998541110  1111000   000110 011234434 49999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchH
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTV  165 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t  165 (279)
                      ...                -+.++++.+... .++..|+...|.++...
T Consensus        75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~  107 (304)
T PRK06522         75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE  107 (304)
T ss_pred             ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            321                134445555544 36678888899988654

>PLN02686 cinnamoyl-CoA reductase

Probab=97.89  E-value=9.3e-05  Score=69.95  Aligned_cols=119  Identities=11%  Similarity=0.104  Sum_probs=72.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcc---c-CCCeEEEEe----CCCCHHhhhC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---D-TGAVVRGFL----GQPQLENALT  108 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~---~-~~~~v~~~~----~~~d~~eal~  108 (279)
                      ..++++|.|+||+|++|++++..|+..|+  +|+++..+... ....++...   . ....+..+.    ...++.++++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            35577999999999999999999999998  88776554311 111122110   0 001222211    1123456788


Q ss_pred             CCCEEEEccCCCCCCCC--chhhHHHhhHHHHHHHHHHHHHh-CCCceEEEec
Q 023671          109 GMDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~--~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~T  158 (279)
                      ++|.||++++.....+.  ....+...|+...+.+++.+.+. +.+-+|+..|
T Consensus       128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS  180 (367)
T PLN02686        128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS  180 (367)
T ss_pred             hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence            99999999875422221  12345567889999999998875 3343343333

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.88  E-value=8e-05  Score=67.06  Aligned_cols=95  Identities=23%  Similarity=0.298  Sum_probs=66.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC--CEEEEccCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP  120 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A--DiVIitag~~  120 (279)
                      ||.|+||+|++|++++..|...|+  +|+++++..     .|+.+.            .++.++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999999887  999987641     222221            1344566665  9999999864


Q ss_pred             CCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          121 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       121 ~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....  ......+..|+.....+++.+.+...  .++++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  12345677899999999999887643  344443

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.87  E-value=4.3e-05  Score=69.44  Aligned_cols=113  Identities=17%  Similarity=0.092  Sum_probs=69.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +..+||+|+||+||||||++-.|+..|+  +|...|..-. +....+.|...+++.+.+. .+.....+..+|-|++.|.
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAa  100 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAA  100 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhcc
Confidence            4457999999999999999999999997  9999997542 3333445544344444321 1122356889999999886


Q ss_pred             CCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671          119 VPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus       119 ~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~  157 (279)
                      ....++  .+-.+.+..|.--........++.+  +.++.+
T Consensus       101 pasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~a  139 (350)
T KOG1429|consen  101 PASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLA  139 (350)
T ss_pred             CCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEe
Confidence            433222  2333444455444444444444443  444443

>PLN02240 UDP-glucose 4-epimerase

Probab=97.84  E-value=0.00028  Score=65.45  Aligned_cols=116  Identities=18%  Similarity=0.157  Sum_probs=70.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhccc--CCCeEEEEe----CCCCHHhhhC--C
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD--TGAVVRGFL----GQPQLENALT--G  109 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~--~~~~v~~~~----~~~d~~eal~--~  109 (279)
                      +.+||.|+||+|++|++++..|+..|+  +|+++|....  ......+.+..  ....++.+.    ...++.++++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            346999999999999999999999887  9999986431  11111111110  011122211    1112333343  6


Q ss_pred             CCEEEEccCCCCC-CC-CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          110 MDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       110 ADiVIitag~~~k-~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +|+||++|+.... .. ......+..|+.....+++.+.+..... ++.+|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            8999999986421 11 2234577889999999999888765443 44444

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.83  E-value=0.00017  Score=66.91  Aligned_cols=98  Identities=18%  Similarity=0.376  Sum_probs=63.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc--c--------CCCeEEEEeCCCCHHhhh-CCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--------TGAVVRGFLGQPQLENAL-TGM  110 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~--~--------~~~~v~~~~~~~d~~eal-~~A  110 (279)
                      |||+|||| |.+|+.++..|...++  +|.++++++.  ....+...  .        ....++.   ++++.+++ .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence            58999999 9999999999999987  9999998652  11112110  0        0112333   24666666 589


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-h-CCCceEEEecCCCCc
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNS  163 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~-~-~p~a~viv~TNPvd~  163 (279)
                      |+||++.-                ..-+.++++.+.. + .++..++..+|=.+.
T Consensus        73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            99999862                1224455555654 3 366677777877643

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.80  E-value=0.00019  Score=63.45  Aligned_cols=115  Identities=16%  Similarity=0.223  Sum_probs=67.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      +.+++.|+||+|.+|++++..|+..|.  +|+++++++  ......++.+..  ..+..+. .-+|.   .+++      
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAER   81 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999876  222223333321  2222211 11121   1222      


Q ss_pred             -CCCCEEEEccCCCCCC---C---CchhhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671          108 -TGMDLVIIPAGVPRKP---G---MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g---~~r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T  158 (279)
                       ...|+||+++|.....   .   ....+.+..|+..    .+.+.+.+.+..+.+.++++|
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence             3489999999864211   1   1122344556655    666677763334445555554

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.78  E-value=0.00022  Score=67.35  Aligned_cols=116  Identities=21%  Similarity=0.223  Sum_probs=76.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGF----LGQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~----~~~~d~~eal~~ADiVI  114 (279)
                      ++.++.|+||+||+|.+++..|.+.+...||.++|.... ...-.|.... ....++..    ....++..+++++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            456899999999999999999999886679999998762 1111111110 11222221    1123457789999 777


Q ss_pred             EccCCCC-CCCC-chhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          115 IPAGVPR-KPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~-k~g~-~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +++..+. .-.. .+.-....|+...+.+++.+.+.+-+. +|+.|
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~-lIYtS  125 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKR-LIYTS  125 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCE-EEEec
Confidence            7665432 2223 356667889999999999999887543 34433

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.78  E-value=0.00023  Score=67.93  Aligned_cols=113  Identities=18%  Similarity=0.137  Sum_probs=68.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h--HHhhhhcccCCCe-EEE-EeCCCCHHhhhC----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTGAV-VRG-FLGQPQLENALT----  108 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g--~~~DL~~~~~~~~-v~~-~~~~~d~~eal~----  108 (279)
                      .+.+||.|+||+|++|++++..|+.+|+  +|++++++...  .  ...++........ +.. ....+++.++++    
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            3456999999999999999999999998  99999986521  1  1111111100111 111 111123444555    


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                      ++|+||++++.+...   ..+.+..|....+.+++.+++..-.-+|++
T Consensus       136 ~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i  180 (390)
T PLN02657        136 PVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAKHFVLL  180 (390)
T ss_pred             CCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence            599999988753211   123456677888888888887654434433

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=97.78  E-value=0.00023  Score=64.49  Aligned_cols=93  Identities=13%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCCCCC-
Q 023671           46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGVPRK-  122 (279)
Q Consensus        46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~~~k-  122 (279)
                      |+||+|++|++++..|+..++  +++++....    ..|+.+.            .++.+.++  +.|+||++|+.... 
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~   63 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI   63 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence            799999999999999988886  555543211    1233221            12333444  57999999975321 


Q ss_pred             --CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          123 --PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       123 --~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                        ......+.+..|+.....+++.+++.....+|+.
T Consensus        64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~   99 (306)
T PLN02725         64 HANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFL   99 (306)
T ss_pred             chhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEe
Confidence              1123456778899999999999998764434443

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.77  E-value=0.00022  Score=66.93  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=65.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc----cC-------CCeEEEEeCCCCHHhhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------GAVVRGFLGQPQLENALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~----~~-------~~~v~~~~~~~d~~eal~  108 (279)
                      .+|||+|||+ |.+|+.++..|...+   +++++..++..  ..++...    ..       ..++..   ++|+.++++
T Consensus         6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~~   76 (341)
T PRK12439          6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAAN   76 (341)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHHh
Confidence            4579999999 999999999999887   46777765421  1112211    00       112332   357778899


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~  163 (279)
                      ++|+||++..                ...++++++++..+- ++..++.++|-++.
T Consensus        77 ~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         77 CADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             cCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            9999999862                234566666666553 66778888887764

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.76  E-value=0.00022  Score=64.81  Aligned_cols=109  Identities=11%  Similarity=0.123  Sum_probs=66.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhh----hCCCCEEEEccCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDLVIIPAGV  119 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~ea----l~~ADiVIitag~  119 (279)
                      |.|+||+|++|++++..|...|+ .+|+++|..........+........+.   ..+.++..    +.+.|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYID---KEDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCc---chhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999998884 3788888654211111111100000010   01112221    2489999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ......+..+.+..|+.....+++.+.+...  .++++|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            4322223455677899999999999887654  344444

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.75  E-value=0.00028  Score=65.66  Aligned_cols=69  Identities=26%  Similarity=0.403  Sum_probs=48.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc--------cC--CCeEEEEeCCCCHHhhhCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------DT--GAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~--------~~--~~~v~~~~~~~d~~eal~~A  110 (279)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++....  ++...        ..  ...+..   ++++.++++++
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~--~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~a   75 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAA--ALAAERENREYLPGVALPAELYP---TADPEEALAGA   75 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCC
Confidence            579999999 9999999999999998  9999999752111  11111        00  011222   24667788999


Q ss_pred             CEEEEcc
Q 023671          111 DLVIIPA  117 (279)
Q Consensus       111 DiVIita  117 (279)
                      |+||++.
T Consensus        76 D~Vi~~v   82 (328)
T PRK14618         76 DFAVVAV   82 (328)
T ss_pred             CEEEEEC
Confidence            9999986

>PRK08643 acetoin reductase; Validated

Probab=97.74  E-value=0.0014  Score=57.84  Aligned_cols=115  Identities=19%  Similarity=0.249  Sum_probs=65.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~  108 (279)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|.+..  .....++.+..  ..+..+. .-++   +.+.       +.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  9999998752  22223333211  1222111 1112   1122       23


Q ss_pred             CCCEEEEccCCCCC-CC--Cch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCC
Q 023671          109 GMDLVIIPAGVPRK-PG--MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       109 ~ADiVIitag~~~k-~g--~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +.|++|+++|.... +-  .+.   ...+..|+..    .+.+.+.+.+..+++.++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  140 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ  140 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence            68999999986422 11  111   2234456543    44444445444445666666643

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.73  E-value=0.0003  Score=65.12  Aligned_cols=118  Identities=17%  Similarity=0.283  Sum_probs=71.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHh---hhhcccCC---CeEEEEeCCCCHHhhhCCCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTG---AVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~---DL~~~~~~---~~v~~~~~~~d~~eal~~ADi  112 (279)
                      ...|||+|+|+ |.+|..++..|...|+  +|.+++++.......   .+......   ..+...   ++ .++...+|+
T Consensus         3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~D~   75 (313)
T PRK06249          3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAY---RS-AEDMPPCDW   75 (313)
T ss_pred             CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEE---cc-hhhcCCCCE
Confidence            45679999999 9999999999999887  999999865211100   11100000   111221   23 245788999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      ||++.-..    .            ..+.++.+... .|++.++...|=++.-..     +.+  -+|+.+|++-
T Consensus        76 vilavK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~-----l~~--~~~~~~v~~g  127 (313)
T PRK06249         76 VLVGLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQ-----LRE--ILPAEHLLGG  127 (313)
T ss_pred             EEEEecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHH-----HHH--HCCCCcEEEE
Confidence            99986322    1            12334444443 378888888898875432     232  3677777764

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.70  E-value=0.00029  Score=64.15  Aligned_cols=64  Identities=23%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|||. |.+|.+++..|...|+  +|.++|+++ ....+.+...      +..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g~------~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERGL------VDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCC------ccc--ccCCH-hHhcCCCEEEEcC
Confidence            58999998 9999999999999887  999999875 2111221110      111  12343 5689999999986

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.69  E-value=7.6e-05  Score=64.78  Aligned_cols=166  Identities=17%  Similarity=0.120  Sum_probs=93.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEE--EeCCCCHHhhhCCC--CEEEEccC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRG--FLGQPQLENALTGM--DLVIIPAG  118 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~--~~~~~d~~eal~~A--DiVIitag  118 (279)
                      |.|+||+|++|+.++..|+.++.  +++.+.... ......+...    .....  .....++.+.+++.  |.||++|+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~----~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~   74 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLN----VEFVIGDLTDKEQLEKLLEKANIDVVIHLAA   74 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTT----EEEEESETTSHHHHHHHHHHHTESEEEEEBS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccce----EEEEEeeccccccccccccccCceEEEEeec
Confidence            68999999999999999999998  666555544 2111111000    00000  01112345566666  99999998


Q ss_pred             CCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHH
Q 023671          119 VPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANT  196 (279)
Q Consensus       119 ~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~  196 (279)
                      ....  ......+.+..|+...+.+++.+.+.... .+++++. ..+.-.--...+.....+.+...+|.+.....++-.
T Consensus        75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~  152 (236)
T PF01370_consen   75 FSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVK-RFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLR  152 (236)
T ss_dssp             SSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTS-EEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            6521  01234567888999999999999998874 4444432 211100000000000001122234544444445555


Q ss_pred             HHHHHcCCCCCCCc-ceeecCC
Q 023671          197 FVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       197 ~la~~l~v~~~~V~-~~ViGeh  217 (279)
                      ..+++.+++...++ ..++|.+
T Consensus       153 ~~~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  153 DYAKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHHHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccccccc
Confidence            56666688888887 5588987

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.69  E-value=0.00015  Score=57.74  Aligned_cols=72  Identities=21%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc--cCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~--~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ||+|+||+|.+|+.+...|...+.+.-+.+++..+..|+...-.+.  .....+....  .+ .+.+.++|+||.+.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence            7999999999999999999998877777777776523332211111  1112233221  24 36689999999986

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.68  E-value=0.00029  Score=66.26  Aligned_cols=71  Identities=23%  Similarity=0.396  Sum_probs=48.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---chhHHhhhh--cccC--------CCeEEEEeCCCCH
Q 023671           43 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMDT--------GAVVRGFLGQPQL  103 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~------~~~ev~L~D~~~---~~g~~~DL~--~~~~--------~~~v~~~~~~~d~  103 (279)
                      ||+|||+ |..|.++|..|..++      ...+|.|+.+++   .......+.  |...        ..+++.   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            6999999 999999999999877      123999998843   112222222  2111        112333   3588


Q ss_pred             HhhhCCCCEEEEcc
Q 023671          104 ENALTGMDLVIIPA  117 (279)
Q Consensus       104 ~eal~~ADiVIita  117 (279)
                      .+++++||+||++.
T Consensus        77 ~eal~~ADiIIlAV   90 (342)
T TIGR03376        77 VEAAKGADILVFVI   90 (342)
T ss_pred             HHHHhcCCEEEEEC
Confidence            88999999999985

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK05865 hypothetical protein; Provisional

Probab=97.67  E-value=0.00019  Score=74.69  Aligned_cols=104  Identities=17%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |||.|+||+|++|++++..|+..|+  +|+++|.+....    +.. . ...+.. .....++.++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999999998  999999764110    000 0 011111 111123456788999999999753


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ..       ....|+.....+++.+.+.+.. .++++|.+.
T Consensus        73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            21       3467888889999998876543 455666654

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.0013  Score=58.23  Aligned_cols=38  Identities=29%  Similarity=0.471  Sum_probs=33.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..+.+++.|+||+|.+|+.++..|+.+|+  +|+++++++
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34567999999999999999999999998  899999875

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.64  E-value=0.0004  Score=63.10  Aligned_cols=107  Identities=16%  Similarity=0.085  Sum_probs=66.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hh-HHhhhhcccCCCeEEEEe-CC---CCHHhhhC--CCCEEE
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VTADISHMDTGAVVRGFL-GQ---PQLENALT--GMDLVI  114 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g-~~~DL~~~~~~~~v~~~~-~~---~d~~eal~--~ADiVI  114 (279)
                      ||.|+||+|++|..++..|...+.  +|+++|.... .. ....+...   ..++.+. ..   .++.++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            688999999999999999999887  8888886431 11 11111110   0122211 11   12333443  699999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceE
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATV  154 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~v  154 (279)
                      +++|.....  .....+.+..|+.....+++.+.+.....++
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  117 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFI  117 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEE
Confidence            999864321  1223455678999999999988876544444

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00077  Score=64.32  Aligned_cols=75  Identities=23%  Similarity=0.250  Sum_probs=49.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |+||.|||| |+||+.+|..|++.+- .+|.+.|+... ...+.+..+... ...+.. .....+.+.+++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~-~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDA-ADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecc-cChHHHHHHHhcCCEEEEeCC
Confidence            579999999 9999999999999884 59999999752 112222211110 011111 112245678899999999974

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.64  E-value=0.00032  Score=62.30  Aligned_cols=113  Identities=23%  Similarity=0.285  Sum_probs=64.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEE----eCCCCHHhhh--------
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGF----LGQPQLENAL--------  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~----~~~~d~~eal--------  107 (279)
                      +++.|+||+|.+|..++..|+.+|.  +|+++|++...  ....++..    ..+..+    ....++.+.+        
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~   75 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATG   75 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  99999986521  11112211    111111    1111122222        


Q ss_pred             CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHH---hCCCceEEEecCC
Q 023671          108 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP  160 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~---~~p~a~viv~TNP  160 (279)
                      ...|+||+++|......   .+   -...+..|+.....+.+.+.+   ..+.+.+++++..
T Consensus        76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  137 (260)
T PRK08267         76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA  137 (260)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence            34599999998753221   11   233456676655555444432   2344556655543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.64  E-value=0.00041  Score=61.10  Aligned_cols=114  Identities=14%  Similarity=0.235  Sum_probs=65.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .++|.|+|++|.+|.+++..|+.+|+  +|+++|++..  .....++...  ..++..+. ...|   +.+++       
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998762  2222333221  11222211 1112   22222       


Q ss_pred             CCCCEEEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .+.|+||+++|.....   ..+   -.+.+..|+..    .+.+.+.+.+.... .++++|.
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss  140 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGG-RIINMAS  140 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCe-EEEEEcc
Confidence            3689999999864221   111   12234445444    66666666655433 4554443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.64  E-value=0.00032  Score=64.28  Aligned_cols=91  Identities=23%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             cccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC
Q 023671           22 NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG   99 (279)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~   99 (279)
                      |.-..=|.+++.......+.+||.|+|+ |.+|.++++.|...| +.+|.++|++.  ++..+.++.+..  +...... 
T Consensus       108 NTD~~G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G-~~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~-  182 (284)
T PRK12549        108 NTDWSGFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLG-VERLTIFDVDPARAAALADELNARF--PAARATA-  182 (284)
T ss_pred             cCCHHHHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhC--CCeEEEe-
Confidence            3333345555543322345579999999 999999999999888 46899999986  444555554432  1122211 


Q ss_pred             CCCHHhhhCCCCEEEEcc
Q 023671          100 QPQLENALTGMDLVIIPA  117 (279)
Q Consensus       100 ~~d~~eal~~ADiVIita  117 (279)
                      .+++++.++++|+||.|.
T Consensus       183 ~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        183 GSDLAAALAAADGLVHAT  200 (284)
T ss_pred             ccchHhhhCCCCEEEECC
Confidence            234456789999999983

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.62  E-value=0.00043  Score=65.86  Aligned_cols=74  Identities=20%  Similarity=0.348  Sum_probs=54.2

Q ss_pred             cCCCcccchhhhhhh------------hccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhh
Q 023671           18 LYPPNLQNSCLRQAK------------CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI   85 (279)
Q Consensus        18 ~~~~~~~~~~~~~~~------------~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL   85 (279)
                      -.||+.--.+||...            .++.  ...+||+|||+.|.+|.+++..|...|+  +|.++|++..       
T Consensus        65 ~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~--~~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~-------  133 (374)
T PRK11199         65 GVPPDLIEDVLRRVMRESYSSENDKGFKTLN--PDLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW-------  133 (374)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhHHhcccccC--cccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc-------
Confidence            356666666776433            2222  2347999999559999999999999998  8999997420       


Q ss_pred             hcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           86 SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        86 ~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                                     ++..+++++||+||++.
T Consensus       134 ---------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199        134 ---------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             ---------------hhHHHHHhcCCEEEEeC
Confidence                           12356789999999996

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.61  E-value=0.00096  Score=64.24  Aligned_cols=128  Identities=18%  Similarity=0.200  Sum_probs=72.7

Q ss_pred             ccCCCcccch----hhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCC
Q 023671           17 HLYPPNLQNS----CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA   92 (279)
Q Consensus        17 ~~~~~~~~~~----~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~   92 (279)
                      |++|.+-.++    ++-+..-+... .++++|.|+||+|.+|..++..|.++|.  +|+++|+++.. ....+.......
T Consensus       151 ~~~~~~~~~~~~~~~~d~~~~ta~s-l~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~~v  226 (406)
T PRK07424        151 HFDNQNAYYCGTFTLVDKLMGTALS-LKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDLPV  226 (406)
T ss_pred             EeccccceeeeeEEEeehhcCcccC-CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCCCe
Confidence            6677755543    33444433331 3456899999999999999999999997  99999986521 111111111011


Q ss_pred             e-EEE-EeCCCCHHhhhCCCCEEEEccCCCCCCCCch---hhHHHhhHH----HHHHHHHHHHHh
Q 023671           93 V-VRG-FLGQPQLENALTGMDLVIIPAGVPRKPGMTR---DDLFNINAG----IVRTLCEGIAKC  148 (279)
Q Consensus        93 ~-v~~-~~~~~d~~eal~~ADiVIitag~~~k~g~~r---~d~~~~N~~----i~~~i~~~I~~~  148 (279)
                      . +.. ....+++.+.+.+.|++|++||.......+.   .+.++.|..    +++.+.+.+++.
T Consensus       227 ~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~  291 (406)
T PRK07424        227 KTLHWQVGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN  291 (406)
T ss_pred             EEEEeeCCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1 111 1111123345678999999998653322222   234555655    455555555443

>PRK09135 pteridine reductase; Provisional

Probab=97.61  E-value=0.0016  Score=56.92  Aligned_cols=104  Identities=18%  Similarity=0.179  Sum_probs=60.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .++|.|+||+|++|++++..|+.+|.  +|+++|+..   ......++.+... ..+..+. .-+|   ..+++      
T Consensus         6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  999999753   1222223332211 1122111 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCC--CC-Cc---hhhHHHhhHHHHHHHHHHHHH
Q 023671          108 -TGMDLVIIPAGVPRK--PG-MT---RDDLFNINAGIVRTLCEGIAK  147 (279)
Q Consensus       108 -~~ADiVIitag~~~k--~g-~~---r~d~~~~N~~i~~~i~~~I~~  147 (279)
                       .+.|+||+++|....  .. .+   ..+.+..|+.....+.+.+.+
T Consensus        83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~  129 (249)
T PRK09135         83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP  129 (249)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence             357999999985321  11 11   234556777666666665543

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.60  E-value=0.00046  Score=62.12  Aligned_cols=96  Identities=15%  Similarity=0.182  Sum_probs=60.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ++||+|||+ |.+|..++..+...+. ..+|.++|+++..  ...+.+..   .+..   .++..+.++++|+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            579999998 9999999999988772 2488999987521  11222210   1121   2344667899999999862 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                         +            ..++++++.+..+. +..|+..+|-+.
T Consensus        72 ---~------------~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---P------------QVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---H------------HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence               1            22445555555443 456666677653

>PLN02253 xanthoxin dehydrogenase

Probab=97.59  E-value=0.0015  Score=58.61  Aligned_cols=114  Identities=17%  Similarity=0.251  Sum_probs=64.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|.++.  .....++..   ..++..+. .-.|   +.+++      
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~   91 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK   91 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  9999998652  122222221   11222211 1112   22222      


Q ss_pred             -CCCCEEEEccCCCCCC-C----Cch---hhHHHhhHHHHHH----HHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP-G----MTR---DDLFNINAGIVRT----LCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~-g----~~r---~d~~~~N~~i~~~----i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||..... +    .+.   ...+..|+.....    ..+.+.+. ..+.+++++.
T Consensus        92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~isS  155 (280)
T PLN02253         92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLCS  155 (280)
T ss_pred             hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEecC
Confidence             2689999999875321 1    111   2345666554433    44444332 3455666554

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.59  E-value=0.0015  Score=57.22  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.++|.|+||+|.+|..++..|++.|.  +|++++++.
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~   39 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE   39 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999998  899999876

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.58  E-value=0.001  Score=63.15  Aligned_cols=114  Identities=18%  Similarity=0.240  Sum_probs=74.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc------hhHH----hhhh----cccCCCeEEEEeCCCCHHhhh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT----ADIS----HMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~------~g~~----~DL~----~~~~~~~v~~~~~~~d~~eal  107 (279)
                      ++|+|||- |+||..+|..++.+|.  +|+-+|+|+.      .|+.    .++.    ......+++.   |+|. +.+
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~l   82 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EEL   82 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hhc
Confidence            79999998 9999999999999998  9999999971      1221    1111    1111334554   3564 568


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc--eEEEecCCCCchHHHH
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA--TVNLISNPVNSTVPIA  168 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a--~viv~TNPvd~~t~~~  168 (279)
                      +.||++|+|...|.+...+      -.+..+.+-++.|.++-..+  +++=.|-|.+..-.++
T Consensus        83 ~~~dv~iI~VPTPl~~~~~------pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~  139 (436)
T COG0677          83 KECDVFIICVPTPLKKYRE------PDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV  139 (436)
T ss_pred             ccCCEEEEEecCCcCCCCC------CChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence            8999999999888654211      12344555566666654333  3444478887766554

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.0011  Score=60.66  Aligned_cols=57  Identities=19%  Similarity=0.248  Sum_probs=40.5

Q ss_pred             cCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           18 LYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +-|| .|.-.++..........+.++|.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        18 ~~~~-~~~~~~~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~   74 (293)
T PRK05866         18 MRPP-ISPQLLINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE   74 (293)
T ss_pred             cCCC-CCchhhcCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            3344 44444443333222223446899999999999999999999997  999999875

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.58  E-value=0.0032  Score=55.73  Aligned_cols=117  Identities=13%  Similarity=0.179  Sum_probs=67.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~  108 (279)
                      ++|.|+||+|.+|.+++..|+++|.  +|+++|++.  ......++........+..+. ..++   ...+       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  999999875  222222232211111222211 1122   1111       24


Q ss_pred             CCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       109 ~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      ..|+||+++|.+...   ..+..   ..+..|+.    +.+.+.+.+.+..+++.++++|..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~  142 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK  142 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            679999999865322   11222   22344544    355666666555545666666654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.57  E-value=0.00024  Score=57.58  Aligned_cols=102  Identities=22%  Similarity=0.234  Sum_probs=57.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..+||+|||+ |.||.+++..|...|+  +|.-+-... ...+.++.+.-  .....    .++.+.+++||++|++.. 
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavp-   77 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVP-   77 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEec-
Confidence            3569999999 9999999999999998  776664332 11222222221  11111    134577899999999962 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh--C-CCceEEEe--cCCCCchHHH
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLI--SNPVNSTVPI  167 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~--~-p~a~viv~--TNPvd~~t~~  167 (279)
                          +           ..+.+++++|..+  . |+.+|+=.  +-+++++.++
T Consensus        78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence                1           1266788888876  2 45444433  3567777653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK12320 hypothetical protein; Provisional

Probab=97.56  E-value=0.00061  Score=69.62  Aligned_cols=100  Identities=13%  Similarity=0.095  Sum_probs=65.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |||.|+||+||+|++++..|..+|+  +|..+|.....     ..+.. ...+.. ... ..+.+++.++|+||++++..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~-ve~v~~Dl~d-~~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPR-VDYVCASLRN-PVLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCC-ceEEEccCCC-HHHHHHhcCCCEEEEcCccC
Confidence            5899999999999999999999998  99999975421     11100 001111 010 12345678999999999753


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .  .    +....|+....++++.+++.+.  .++++|
T Consensus        72 ~--~----~~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         72 T--S----APGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             c--c----chhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence            1  1    1124688888899998887654  344444

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.56  E-value=0.00061  Score=60.55  Aligned_cols=111  Identities=15%  Similarity=0.084  Sum_probs=64.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe--CC---CCHHhhh-CCCCEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQ---PQLENAL-TGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~--~~---~d~~eal-~~ADiV  113 (279)
                      +++||.|+||+|++|+.++..|+.+++  +|+++.++....... +..   ...+..+.  -+   .++.+.+ .++|+|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc---CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            357999999999999999999999887  888876654211110 111   01122111  01   1234556 689999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |+++|.....+.  .+.+..|......+++.+.+....-+|++.|
T Consensus        90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS  132 (251)
T PLN00141         90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVTRFILVSS  132 (251)
T ss_pred             EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence            998875422111  1112345555677777777655444444434

>PRK07680 late competence protein ComER; Validated

Probab=97.55  E-value=0.00053  Score=62.19  Aligned_cols=97  Identities=18%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~--~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |||+|||+ |.+|..++..|...+..  .+|.++|++...  ...+.+.  ...+...   .+..+.++++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~--~~g~~~~---~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER--YPGIHVA---KTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH--cCCeEEE---CCHHHHHHhCCEEEEecC-
Confidence            48999998 99999999999888742  479999987521  1222221  1123322   245677899999999861 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                         +            ..+.++++.+..+- ++.+|+.++|++.
T Consensus        72 ---p------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ---P------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ---H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence               1            12344555555443 5678888888774

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.55  E-value=0.00074  Score=62.28  Aligned_cols=69  Identities=25%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+||+|||+ |.+|..++..|...++..+|.++|+++. ...+.+   ..  .....   ..+..+++++||+||++..
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~---~g--~~~~~---~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARE---LG--LGDRV---TTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh---CC--CCcee---cCCHHHHhcCCCEEEECCC
Confidence            368999998 9999999999998886568999998752 111111   11  11111   1245677899999999974

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.55  E-value=0.00091  Score=61.63  Aligned_cols=112  Identities=13%  Similarity=0.037  Sum_probs=69.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-hhhh----c-----ccCC-CeEEEEeCC----------C
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADIS----H-----MDTG-AVVRGFLGQ----------P  101 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~-~DL~----~-----~~~~-~~v~~~~~~----------~  101 (279)
                      +|.|+||+|++|++++..|+..+...+|+++.++...... ..+.    .     .... .++....+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            4789999999999999999988854489999876521111 0111    0     0000 234332211          1


Q ss_pred             CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  155 (279)
Q Consensus       102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi  155 (279)
                      ++.+...++|+||++|+.... .....++...|+.....+++...+.....++.
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~  133 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKPLHY  133 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEE
Confidence            233446789999999975432 22334566788888888988888765544333

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.53  E-value=0.0007  Score=60.89  Aligned_cols=95  Identities=14%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~-D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||++||. |.+|..++..|+..++  ..+|+++ |+++..  ...+...    .+..   ..+..++++++|+||++..
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~---~~~~~e~~~~aDvVil~v~   70 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKT---AASNTEVVKSSDVIILAVK   70 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEE---eCChHHHHhcCCEEEEEEC
Confidence            68999998 9999999999998875  4578888 765421  2222221    1222   1244677899999999871


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                       |               ..++++.+.+.... |+.++|..++...
T Consensus        71 -~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~   99 (266)
T PLN02688         71 -P---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT   99 (266)
T ss_pred             -c---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence             2               12344444554443 5666665555553

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.0013  Score=57.77  Aligned_cols=116  Identities=19%  Similarity=0.059  Sum_probs=66.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh----CCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL----TGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal----~~A  110 (279)
                      |++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+.. -+|   +++.+    ...
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            35899999999999999999999997  8999998762  22223332211 122332211 112   22222    245


Q ss_pred             CEEEEccCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          111 DLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       111 DiVIitag~~~k~---g~~r~---d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      |++|+++|.....   ..+..   +.+..|+.....+.+.+.+.   ...+.++++|-
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  135 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS  135 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            9999998853211   22222   34566766555555555443   23455665553

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00071  Score=59.45  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .+++.|+||+|++|.+++..|+.+|+  +|++++++..   .....++....  .++..+. .-++   +.+.+      
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8988887641   11122232211  1122111 1112   11122      


Q ss_pred             -CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                       .+.|+||+++|.......+..+.+..|......+++.+.+.. ..+.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence             368999999875422111223344567666666777776653 2345555543

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.52  E-value=0.0013  Score=57.57  Aligned_cols=114  Identities=17%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal-------  107 (279)
                      .++|.|+||+|++|+.++..|+..|.  +|+++|.+..  .....++....  .++..+.. ..|   .++.+       
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999998  9999998762  22222333221  12222111 112   11222       


Q ss_pred             CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHH----HhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~----~~~p~a~viv~TN  159 (279)
                      ...|++|+++|......   .+.   ...+..|+.....+.+.+.    +. +.+.+++++.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~iss  139 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIVNIAS  139 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEECc
Confidence            35899999998532111   111   2235566665555544443    33 3344555543

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.52  E-value=0.00064  Score=63.87  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +.+.++|.|+||+|++|+.++..|..+.-+.+|+++++++  +.....++.+..    +      .++++++.++|+||.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~----i------~~l~~~l~~aDiVv~  221 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGK----I------LSLEEALPEADIVVW  221 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcccc----H------HhHHHHHccCCEEEE
Confidence            4556799999999999999999997643256999999865  222222222111    1      246788999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t  165 (279)
                      +++.+...-.+..++                  .+..+++=++-|=|+-.
T Consensus       222 ~ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        222 VASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CCcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCCc
Confidence            998763211111111                  25577777788877753

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.52  E-value=0.0022  Score=57.46  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=64.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------hCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTGM  110 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l~~A  110 (279)
                      ++|.|+||+|++|+.++..|+..|.  +|.++++++.  ...++.... ...+..+. .-+|.   .+.       +.+.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999987  8999987641  111111110 11122111 11121   122       2457


Q ss_pred             CEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEec
Q 023671          111 DLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLIS  158 (279)
Q Consensus       111 DiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~T  158 (279)
                      |+||+++|......   .+.   ...+..|+.....+++.+.++   ...+.++++|
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~s  134 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVS  134 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence            99999998653221   111   234566777666666665322   2234555554

>PLN02996 fatty acyl-CoA reductase

Probab=97.51  E-value=0.0015  Score=64.37  Aligned_cols=121  Identities=16%  Similarity=0.099  Sum_probs=74.3

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCc----hhH-Hhhhhccc----------------CCCeE
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT----PGV-TADISHMD----------------TGAVV   94 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~----~g~-~~DL~~~~----------------~~~~v   94 (279)
                      +|-+.+.|.|+||+||+|++++..|+.. +-+.+|+++.+...    ... ..++.+..                ...++
T Consensus         7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv   86 (491)
T PLN02996          7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV   86 (491)
T ss_pred             HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence            3455678999999999999999887764 44568888877541    100 01111100                01234


Q ss_pred             EEEeCC----------CC-HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671           95 RGFLGQ----------PQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (279)
Q Consensus        95 ~~~~~~----------~d-~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T  158 (279)
                      +.+.+.          .+ +.+.++++|+||++|+... ...+..+....|+.....+++...+.. .+.++.+.|
T Consensus        87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST  161 (491)
T PLN02996         87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST  161 (491)
T ss_pred             EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence            433221          01 2345689999999998653 223345667889999999999887642 344444443

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0013  Score=57.23  Aligned_cols=115  Identities=18%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal-------  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  .....++...   ..+..+.. .++   +.+.+       
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  8999998762  1222233321   11222111 112   22222       


Q ss_pred             CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCceEEEecCC
Q 023671          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  160 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TNP  160 (279)
                      .+.|+||+++|.....   ..+.   .+.+..|+.....+.+.+.+.  ...+.++++|..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            3799999998764321   1122   233555655444444443322  234556666643

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0011  Score=57.34  Aligned_cols=36  Identities=28%  Similarity=0.323  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.++|.|+||+|.+|..++..|+++|.  +|+++|+++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~   41 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA   41 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence            346899999999999999999999998  899999876

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.48  E-value=0.00092  Score=64.95  Aligned_cols=67  Identities=22%  Similarity=0.311  Sum_probs=47.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+||||+|.+|..++..|...|+  +|.++|+++...  .++....   .+..   +++..+++.+||+||++..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~---gv~~---~~~~~e~~~~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL---GVEY---ANDNIDAAKDADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc---CCee---ccCHHHHhccCCEEEEecC
Confidence            5899998669999999999999887  899999875221  1111111   1111   2356678999999999863

>PRK05717 oxidoreductase; Validated

Probab=97.48  E-value=0.00096  Score=59.10  Aligned_cols=112  Identities=15%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH--HhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~--~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      .++|.|+||+|++|++++..|+..|.  +|+++|+++....  ..++.     ..+..+. ...+   ..++       +
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALG-----ENAWFIAMDVADEAQVAAGVAEVLGQF   82 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  9999998652111  11111     1111111 1112   1111       2


Q ss_pred             CCCCEEEEccCCCCCCC-----Cch---hhHHHhhHHHHHHHHHHHHHh--CCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG-----MTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g-----~~r---~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TN  159 (279)
                      ...|++|+++|......     .+.   ...+..|+.....+.+.+.++  ...+.+|++|.
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS  144 (255)
T PRK05717         83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLAS  144 (255)
T ss_pred             CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence            35799999998753211     111   235667776666666666542  23355666654

>PRK07069 short chain dehydrogenase; Validated

Probab=97.48  E-value=0.0057  Score=53.60  Aligned_cols=114  Identities=22%  Similarity=0.269  Sum_probs=66.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHhhhhcccCCCeEEEE-eCCCC---HH-------hhhC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGF-LGQPQ---LE-------NALT  108 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~-~--~~g~~~DL~~~~~~~~v~~~-~~~~d---~~-------eal~  108 (279)
                      ||.|+||+|.+|.+++..|+.+|.  +|++.|++ .  ......++........+..+ ..-.|   +.       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999999997  99999987 3  22222233221100111111 01112   11       1234


Q ss_pred             CCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ..|+||+++|.....   ..+.   ...+..|+.    ..+.+.+.+.+... +.++++|.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss  138 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS  138 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence            689999999865321   1111   234556665    77788888876544 45555553

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.46  E-value=0.0017  Score=57.56  Aligned_cols=70  Identities=10%  Similarity=0.181  Sum_probs=45.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +.+||+|||+ |.+|..++..+...+.  ..++++++.+.. ....++.+..   .+..   ++++.+.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence            3579999998 9999999998887752  345777876421 1122222211   1222   235667889999999985

>PRK06182 short chain dehydrogenase; Validated

Probab=97.46  E-value=0.0014  Score=58.73  Aligned_cols=113  Identities=13%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhh-------CCCCE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGMDL  112 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal-------~~ADi  112 (279)
                      .++|.|+||+|.+|..++..|...|.  +|++.++++..  ..++..... ..+.. .....++.+.+       .+.|+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            45899999999999999999999998  99999887521  111211110 11111 11111222223       37899


Q ss_pred             EEEccCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          113 VIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       113 VIitag~~~k~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +|+++|.....   ..+   ....+..|..    .++.+.+.+++... +.++++|.
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            99999864221   111   2234455553    36666677766543 44555543

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0053  Score=55.23  Aligned_cols=159  Identities=15%  Similarity=0.173  Sum_probs=83.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---------hHHhhhhcccCCCeEEEEe-CCCC---HHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGFL-GQPQ---LENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---------g~~~DL~~~~~~~~v~~~~-~~~d---~~ea  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++...         ..+.++....  .++..+. .-++   +.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~   80 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAA   80 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHH
Confidence            345899999999999999999999997  99999986511         1112222211  1122111 1112   2222


Q ss_pred             h-------CCCCEEEEccCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHh---CCCceEEEecCCCCchHHHHHH
Q 023671          107 L-------TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAE  170 (279)
Q Consensus       107 l-------~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNPvd~~t~~~~~  170 (279)
                      +       ...|++|+++|.....   ..+..   ..+..|+.-...+++.+...   ...+.++++|.+.....     
T Consensus        81 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~-----  155 (273)
T PRK08278         81 VAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP-----  155 (273)
T ss_pred             HHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc-----
Confidence            2       3689999999864211   12222   23445655444444444322   23456666664432110     


Q ss_pred             HHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       171 ~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                           ..++....++.+..--.++-..+++.++  +..|++-.+
T Consensus       156 -----~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i  192 (273)
T PRK08278        156 -----KWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNAL  192 (273)
T ss_pred             -----cccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence                 0123344556543323345566666664  344554444

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.46  E-value=0.0031  Score=55.76  Aligned_cols=117  Identities=15%  Similarity=0.205  Sum_probs=66.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------  106 (279)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++.|+++.  .....++...  ..++..+. .-+|   +.+.       
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAE   84 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999998  9999998762  2222223221  11222211 1112   1222       


Q ss_pred             hCCCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNP  160 (279)
                      +...|++|+++|.....   ..+   -.+.+..|+.....+.+.+.++   ...+.++++|..
T Consensus        85 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         85 IGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            23579999999864211   111   1234556766555555555443   233556666543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.45  E-value=0.003  Score=57.35  Aligned_cols=118  Identities=18%  Similarity=0.209  Sum_probs=76.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe----CCCCHHh------
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLEN------  105 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~----~~~d~~e------  105 (279)
                      +.+++.+.|+|||+-+|..+|..|+.+|+  +|+|+.+++  +...+.++.+.. ...+..+.    .+++.+.      
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence            45667899999999999999999999999  999999987  556666777643 22232221    1112211      


Q ss_pred             -hhCCCCEEEEccCCCCCCC------CchhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          106 -ALTGMDLVIIPAGVPRKPG------MTRDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       106 -al~~ADiVIitag~~~k~g------~~r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       .....|+.|..||...-..      .+-.+++.-|+.    +.+.+.+.+.+.. .+.||+++.
T Consensus        80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S  143 (265)
T COG0300          80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGS  143 (265)
T ss_pred             hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence             1126999999999753221      123456777754    4555566666543 456677653

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.45  E-value=0.00091  Score=61.16  Aligned_cols=66  Identities=18%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|||. |.+|..++..+...|+  +|.++|+++...  ..+....    +..   .+++.+.+++||+||++..
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            468999998 9999999999999887  999999875221  1122111    111   2356778899999999863

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.44  E-value=0.0021  Score=56.84  Aligned_cols=112  Identities=19%  Similarity=0.253  Sum_probs=65.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe----CCCCHHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL----GQPQLENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~----~~~d~~ea-------l  107 (279)
                      .+++.|+||+|.+|..++..|+.+|.  +|+++|.+..  .....++..     .+..+.    ...+..++       +
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERF   78 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  9999998762  122222211     111111    01112222       2


Q ss_pred             CCCCEEEEccCCCCC-C--CCc---hhhHHHhhHHHHHHHHHHHHH----hCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k-~--g~~---r~d~~~~N~~i~~~i~~~I~~----~~p~a~viv~TN  159 (279)
                      ...|++|+++|.... +  ..+   -...+..|+.-...+.+.+.+    ..+.+.++++|.
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  140 (257)
T PRK07067         79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS  140 (257)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            468999999986421 1  111   223456666655555555543    233456666654

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.44  E-value=0.00018  Score=65.82  Aligned_cols=97  Identities=23%  Similarity=0.260  Sum_probs=59.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||.|+|++|++|+.+...|..+++  +++.++..+     .|+.+...   +      .++-+. .+.|+||+||+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~~---~------~~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPEA---V------AKLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHHH---H------HHHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHHH---H------HHHHHH-hCCCeEeccceeec
Confidence            7999999999999999999988887  888886642     33333211   0      011121 25899999997642


Q ss_pred             CC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671          122 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus       122 k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~  157 (279)
                      ..  ..........|+.....+++...+.+  +.+|.+
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~   99 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHI   99 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEe
Confidence            11  12344567789999999999998754  444444

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0045  Score=55.70  Aligned_cols=114  Identities=13%  Similarity=0.092  Sum_probs=64.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~~  109 (279)
                      +++|.|+||+|.+|++++..|+..|.  +|++++++....  .++.... ..++..+. .-+|   +.+.+       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45899999999999999999999997  899999875211  1122111 11111111 1112   11222       35


Q ss_pred             CCEEEEccCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          110 MDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k-~--g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      .|+||+++|.... +  ..+.   .+.+..|+.-...+.+.+.+.   ...+.++++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence            8999999986421 1  1122   233667776555555554332   22345555553

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0036  Score=56.54  Aligned_cols=115  Identities=18%  Similarity=0.183  Sum_probs=65.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      .+.+.|+||+|.+|..++..|+.+|.  +|++.|+++  ......++....  .++..+. .-+|   +.+.       +
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  899999876  222223333211  1222211 1112   1122       2


Q ss_pred             CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|++||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.++++|.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3579999999864211   1222   223455654    44445555545443456666654

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0038  Score=55.02  Aligned_cols=115  Identities=13%  Similarity=0.088  Sum_probs=64.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++++++  ......++....  .++..+. ..++   +.+.++     
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   81 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA   81 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  899999876  222223333221  1222211 1112   222222     


Q ss_pred             --CCCEEEEccCCCCCC----CCchh---hHHHhhHHHHH----HHHHHHHHhCCCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKP----GMTRD---DLFNINAGIVR----TLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~----g~~r~---d~~~~N~~i~~----~i~~~I~~~~p~a~viv~TN  159 (279)
                        ..|+||+++|.....    ..+..   +.+..|+.-..    ...+.+.+. ..+.++++|.
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS  144 (253)
T PRK06172         82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTAS  144 (253)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence              459999999864221    12222   23455655443    334444433 2345555554

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0032  Score=56.12  Aligned_cols=116  Identities=15%  Similarity=0.147  Sum_probs=66.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      +.+++.|+||+|++|.+++..|+.+|.  +|+++|++.  ......++....  ..+..+. .-++.   .++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999997  999999875  222223332211  1222211 11222   111       


Q ss_pred             hCCCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~a~viv~TN  159 (279)
                      +...|+||++||.....   ..+   -.+.+..|+.....+.+..    .+..+.+.++++|.
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS  147 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS  147 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence            23689999999864221   111   1234455655444444444    34345566666654

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0028  Score=55.73  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++|.|+||+|.+|+.++..|+++|.  +|+++++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999997  899999865

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.39  E-value=0.0047  Score=54.84  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=64.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~  108 (279)
                      |++.|+||+|.+|..++..|+.+|.  +|++.|+++  ......++.+..   .+..+. ..+|   .++.       +.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  899999876  222223333211   111111 1112   1111       34


Q ss_pred             CCCEEEEccCCCC-CC----CCchhhH---HHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPR-KP----GMTRDDL---FNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~-k~----g~~r~d~---~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ..|++|+++|... .+    ..+..++   +..|+    -+.+.+++.+.+....+.|+++|.
T Consensus        76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS  138 (259)
T PRK08340         76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSS  138 (259)
T ss_pred             CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            6899999998642 11    1122222   22232    234455565543334566666654

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.39  E-value=0.0044  Score=54.37  Aligned_cols=116  Identities=16%  Similarity=0.223  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HH-------hhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~-------eal~  108 (279)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++++++.......+....  .++..+. ..++   +.       +...
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999998  999999765322222222211  1122111 1112   11       1224


Q ss_pred             CCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~----I~~~~p~a~viv~TN  159 (279)
                      ..|++|+++|......   .+   -.+.+..|+.....+.+.    +.+....+.+++++.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            6899999998643211   11   123455665544444444    433333456666553

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.37  E-value=0.0015  Score=56.08  Aligned_cols=101  Identities=20%  Similarity=0.249  Sum_probs=62.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-hh--hhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-AD--ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~-~D--L~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+||||+|.+|+.++...+.+|+  ||..+=++..+-.+ .+  +.+.+    +  + ..+.+.+++.|-|+||-+-|
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~D----i--f-d~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKD----I--F-DLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccccccceeeccc----c--c-ChhhhHhhhcCCceEEEecc
Confidence            6999999999999999999999999  99999887622111 10  11111    0  1 11234578999999999876


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .+. ++.   +  ..-.+..+.+...++... ...++++.
T Consensus        72 ~~~-~~~---~--~~~~k~~~~li~~l~~ag-v~RllVVG  104 (211)
T COG2910          72 AGA-SDN---D--ELHSKSIEALIEALKGAG-VPRLLVVG  104 (211)
T ss_pred             CCC-CCh---h--HHHHHHHHHHHHHHhhcC-CeeEEEEc
Confidence            542 121   1  112233555666666533 34555553

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.37  E-value=0.0015  Score=59.40  Aligned_cols=98  Identities=14%  Similarity=0.141  Sum_probs=60.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .|||++||+ |.+|.+++..|+..+.  ..+|.++|++.. ....++....   .++.   +.+..+.+++||+||++..
T Consensus         3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav~   74 (279)
T PRK07679          3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLAMK   74 (279)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEeC
Confidence            469999998 9999999999988872  248899987541 1122232211   1222   1245677899999999862


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  162 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd  162 (279)
                          +.            .+.++++.+... .++.++|.+.+-+.
T Consensus        75 ----p~------------~~~~vl~~l~~~~~~~~liIs~~aGi~  103 (279)
T PRK07679         75 ----PK------------DVAEALIPFKEYIHNNQLIISLLAGVS  103 (279)
T ss_pred             ----HH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                11            122333445443 35666766555554

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.37  E-value=0.00093  Score=61.07  Aligned_cols=64  Identities=16%  Similarity=0.261  Sum_probs=46.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ||+|||. |.+|+.++..|+..|+  +|.++|+++.  ....+.....    ..   .++..+++++||+||++..
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~--~~~~~~~~g~----~~---~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPE--VADELLAAGA----VT---AETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHH--HHHHHHHCCC----cc---cCCHHHHHhcCCEEEEecC
Confidence            5999998 9999999999999998  9999998752  1122222211    11   2345688999999999863

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.37  E-value=0.0009  Score=54.88  Aligned_cols=84  Identities=24%  Similarity=0.260  Sum_probs=53.5

Q ss_pred             hhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhh
Q 023671           29 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENA  106 (279)
Q Consensus        29 ~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~ea  106 (279)
                      +.++..+.-..+.++|+|+|+ |.+|..++..|...+ ..+|.++|++..  ...+.++...  .....    ..+..+.
T Consensus         7 ~~a~~~~~~~~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~   78 (155)
T cd01065           7 VRALEEAGIELKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEEL   78 (155)
T ss_pred             HHHHHhhCCCCCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhc
Confidence            344443321245679999998 999999999998876 458999998762  2222222211  00111    1244566


Q ss_pred             hCCCCEEEEccCCC
Q 023671          107 LTGMDLVIIPAGVP  120 (279)
Q Consensus       107 l~~ADiVIitag~~  120 (279)
                      ++++|+||.+....
T Consensus        79 ~~~~Dvvi~~~~~~   92 (155)
T cd01065          79 LAEADLIINTTPVG   92 (155)
T ss_pred             cccCCEEEeCcCCC
Confidence            89999999997654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.36  E-value=0.0016  Score=61.59  Aligned_cols=68  Identities=21%  Similarity=0.217  Sum_probs=46.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +||+|||. |.+|.+++..|...|+  ++.++|.+........-..... .. .   .++++.+++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~-~~-~---~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV-ID-E---LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC-Cc-c---cccCHHHHhcCCCEEEEeC
Confidence            37999998 9999999999999998  7888888762211111001100 00 0   1235677889999999986

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.36  E-value=0.0015  Score=60.76  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEEeCCCc--h--------hH--Hhh----hhccc---------CCCeEEEEeCCCCHHhhh
Q 023671           53 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TAD----ISHMD---------TGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        53 VG~~la~~L~~~~~~~ev~L~D~~~~--~--------g~--~~D----L~~~~---------~~~~v~~~~~~~d~~eal  107 (279)
                      +|+.+|..++..|+  +|+|+|+++.  .        +.  ..+    +....         ...+++... ..++++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            57889999999999  9999999871  1        11  001    10000         012444321 12356889


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      ++||+||.++              .+|..+.+.+...+.+.+ |++++  .||...+...-+    ..... .|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~l----a~~~~-~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDL----QRHVA-HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHH----HhhcC-CcccEEEE
Confidence            9999999986              356788889999999987 55555  688777554322    22222 34678886

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0029  Score=56.77  Aligned_cols=34  Identities=12%  Similarity=0.056  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+.|+||+|.+|..++..|+.+|+  +|++++++.
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~   37 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP   37 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            4689999999999999999999997  899998865

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.36  E-value=0.0017  Score=59.07  Aligned_cols=98  Identities=23%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC-CCCEEEEccCCCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRK  122 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~-~ADiVIitag~~~k  122 (279)
                      |.|+|++|+||+++...|...|+  +|.++-++..+...  ..+    ..+....   .+.+... ++|+||..||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~----~~v~~~~---~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLH----PNVTLWE---GLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcC----ccccccc---hhhhcccCCCCEEEECCCCccc
Confidence            57999999999999999999998  99999876521111  111    1111111   1223333 79999999997632


Q ss_pred             CC----CchhhHHHhhHHHHHHHHHHHHHhCCCc
Q 023671          123 PG----MTRDDLFNINAGIVRTLCEGIAKCCPNA  152 (279)
Q Consensus       123 ~g----~~r~d~~~~N~~i~~~i~~~I~~~~p~a  152 (279)
                      ..    .....+.+.-+...+.+.+.|.+.....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P  103 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP  103 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence            21    1234455666888899999999765433

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.36  E-value=0.0021  Score=56.23  Aligned_cols=114  Identities=18%  Similarity=0.259  Sum_probs=64.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal------  107 (279)
                      +.++|.|+||+|++|.+++..|+.+|.  +|++++++..  .....++....  ..+..+.. -.|   +.+.+      
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED   80 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  8999998751  22222232221  12322211 112   22222      


Q ss_pred             -CCCCEEEEccCCCCC-C--CCch---hhHHHhhHHHHHHHHHHH----HHhCCCceEEEec
Q 023671          108 -TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS  158 (279)
Q Consensus       108 -~~ADiVIitag~~~k-~--g~~r---~d~~~~N~~i~~~i~~~I----~~~~p~a~viv~T  158 (279)
                       ...|+||+++|.... +  ..+.   .+.+..|+.-...+.+.+    .+..+ ..++++|
T Consensus        81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~s  141 (251)
T PRK12826         81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTS  141 (251)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEe
Confidence             368999999976432 1  1222   234555665554454444    44333 4455544

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.35  E-value=0.0019  Score=59.48  Aligned_cols=95  Identities=18%  Similarity=0.188  Sum_probs=59.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||+|||. |.+|++++..|...++  +|.++|+++..  ...+.....    .......++.+.++++|+||++...  
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~vp~--   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMVPH--   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEcCc--
Confidence            58999998 9999999999999997  99999987621  122222111    0011011233456789999998521  


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671          122 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (279)
Q Consensus       122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPv  161 (279)
                                    ..++++++.+.... |+.+++..||..
T Consensus        70 --------------~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 --------------GIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             --------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          12444445555544 566777776653

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.34  E-value=0.0042  Score=54.59  Aligned_cols=117  Identities=20%  Similarity=0.232  Sum_probs=66.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEE--eCC-CC----------H
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--LGQ-PQ----------L  103 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~--~~~-~d----------~  103 (279)
                      .+.++|.|+|++|++|.+++..|+..|.  +|+++|++.  ......++.+.. ...+..+  ..+ .+          +
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTI   86 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHH
Confidence            4567899999999999999999999887  999999876  222333443322 1111111  100 01          1


Q ss_pred             HhhhCCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHH----HHHHhCCCceEEEecC
Q 023671          104 ENALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  159 (279)
Q Consensus       104 ~eal~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~----~I~~~~p~a~viv~TN  159 (279)
                      .+.+...|+||++||....  +  ..+.   ...+..|+.....+.+    .+.+. +.+.|+++|.
T Consensus        87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~-~~~~iv~~ss  152 (247)
T PRK08945         87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS-PAASLVFTSS  152 (247)
T ss_pred             HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence            2223468999999986322  1  1222   2345566654333444    33333 4455665554

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.34  E-value=0.0025  Score=55.55  Aligned_cols=99  Identities=18%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhH---------------HhhhhcccCCCeEEEEe--
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGV---------------TADISHMDTGAVVRGFL--   98 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-----~~g~---------------~~DL~~~~~~~~v~~~~--   98 (279)
                      ..||+|+|+ |.+|+.++..|+..|. .+|+|+|.+.     +...               ...|.......++..+.  
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~   98 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK   98 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence            348999999 9999999999999985 5899999983     1000               01111111123333321  


Q ss_pred             -CCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671           99 -GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus        99 -~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                       ..+++.+.++++|+||.+.               +|.+.-..+...+.+..+..+++.
T Consensus        99 i~~~~~~~~~~~~DlVi~a~---------------Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        99 ITEENIDKFFKDADIVCEAF---------------DNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             CCHhHHHHHhcCCCEEEECC---------------CCHHHHHHHHHHHHHHcCCCcEEE
Confidence             1123445688999999983               234444555666666555545444

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0031  Score=55.14  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=66.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      +.++|.|+||+|.+|+.++..|+.+|.  +|+++++++  ......++....  .++..+. ..+|.   .+.       
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899998865  222223333221  1222211 11221   111       


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      +.+.|+||+++|.....   ..+.   ...+..|..-...+.+.+.++   .+.+.++++|.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            24789999999864321   1111   123445655554454444332   22456666554

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0049  Score=54.06  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEE-eCCCCHH---h-------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF-LGQPQLE---N-------A  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~-~~~~d~~---e-------a  106 (279)
                      +.+++.|+||+|++|.+++..|+..|.  +|+++|+++.  .....++.+..  ..+..+ ..-+|..   +       .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSA   80 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  9999998752  12222222211  111111 1112221   1       1


Q ss_pred             hCCCCEEEEccCCCCC----C--CCch---hhHHHhhHHHHHHHHHHHHHhC---CCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRK----P--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k----~--g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~a~viv~T  158 (279)
                      +...|+||+++|....    +  ..+.   .+.+..|+.....+.+.+.++.   +.+.++++|
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  144 (250)
T PRK07774         81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS  144 (250)
T ss_pred             hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence            2368999999986421    1  1121   1234566665555555554431   234566555

>PRK05855 short chain dehydrogenase; Validated

Probab=97.33  E-value=0.0063  Score=59.92  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhh------
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA------  106 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea------  106 (279)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++....  ..+..+. .-+|.   .+.      
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~  388 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRA  388 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  8999998762  22223332211  1222211 11121   111      


Q ss_pred             -hCCCCEEEEccCCCCCC---CCch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          107 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 -l~~ADiVIitag~~~k~---g~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       +...|++|++||.....   ..+.   ...+..|+    .+.+.+.+.+.+....+.|+++|.
T Consensus       389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS  452 (582)
T PRK05855        389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS  452 (582)
T ss_pred             hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             23579999999975321   1122   22344564    344555556666555566766654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.33  E-value=0.0019  Score=58.85  Aligned_cols=100  Identities=18%  Similarity=0.143  Sum_probs=62.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~--~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |+||+|||+ |.+|..++..|...+..  .+|+++|.++.. ....+...  ...+..   +.+..+.++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC
Confidence            468999998 99999999999887732  489999886411 11222211  111222   2345677899999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~  163 (279)
                          +            ..++++++.+..+- ++..++.++|-++.
T Consensus        74 ----p------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         74 ----P------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence                1            22445666665543 45566666666544

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.32  E-value=0.0011  Score=60.94  Aligned_cols=64  Identities=20%  Similarity=0.313  Sum_probs=47.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +||+|||. |.+|..++..|+..|+  +|.++|+++..  ..++....    ...   .++..+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence            48999998 9999999999999998  99999987621  12222211    111   235567889999999986

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.32  E-value=0.0021  Score=58.53  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=46.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +||++||+ |.+|++++..|+..++  ..+|+.+|+++.  ....+.+.. .  +...   ++..+.+++||+||++.
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITIT---TNNNEVANSADILILSI   71 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEe
Confidence            58999998 9999999999998875  357999998652  122222211 1  2221   24456789999999987

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0058  Score=54.18  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=65.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-------C
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-------~  108 (279)
                      ++|.|+||+|.+|..++..|+.+|.  +|+++|+++.  +....++....  ..+..+. .-.|.   .+++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999887  9999998752  22222333222  1222211 11221   1122       3


Q ss_pred             CCCEEEEccCCCCCCC---C-ch---hhHHHhhHHHHHHHHHHHHHhC--CCceEEEecCC
Q 023671          109 GMDLVIIPAGVPRKPG---M-TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP  160 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~-~r---~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TNP  160 (279)
                      +.|+||+++|......   . +.   ...+..|+.....+++.+.++.  ..+.++++|..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~  138 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL  138 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            6899999998643211   1 11   2235666665555555554321  23455555543

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.32  E-value=0.0026  Score=55.50  Aligned_cols=114  Identities=21%  Similarity=0.344  Sum_probs=63.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHh-------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------A  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~e-------a  106 (279)
                      +.+++.|+||+|.+|..++..|+.+|.  .|.+.+.+.  ......++.     .++..+. ..++   +.+       .
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD   77 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999997  888887764  111111221     1121111 1112   111       1


Q ss_pred             hCCCCEEEEccCCCCCC---CC---chhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCC
Q 023671          107 LTGMDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~---~r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNP  160 (279)
                      +...|+||+++|.....   ..   +-...+..|+.....+++.+.+.   .+.+.++++|..
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  140 (245)
T PRK12936         78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV  140 (245)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence            34689999999864321   11   12234556666544444443321   234556666644

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.31  E-value=0.0035  Score=55.51  Aligned_cols=36  Identities=33%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+++.|+||+|.+|.+++..|+.+|.  +|+++|+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            456899999999999999999999997  899999875

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.31  E-value=0.0019  Score=58.66  Aligned_cols=66  Identities=23%  Similarity=0.343  Sum_probs=44.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|||. |.+|.+++..|...|+..+|+.+|+++..  ...+.....   ...   ..+..+ +.++|+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence            48999998 99999999999988865589999987521  111111111   001   123444 45699999986

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.016  Score=51.80  Aligned_cols=118  Identities=19%  Similarity=0.179  Sum_probs=64.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCH----------HhhhCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENALTG  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~----------~eal~~  109 (279)
                      +++.|+||+|.+|..++..|+..|.  +|+++++++  ......++..............-+|.          .+.+..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS   78 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            3789999999999999999999997  899999875  22222333322111100000011121          112346


Q ss_pred             CCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHH----HHHHhCCCceEEEecCCC
Q 023671          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPV  161 (279)
Q Consensus       110 ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~----~I~~~~p~a~viv~TNPv  161 (279)
                      .|++|+++|.....   ..+.   ...+..|+.....+++    .+.+....+.|+++|...
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            89999999864221   1121   2335556554444444    444333345666665443

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0021  Score=56.72  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=66.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HH-------h
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LE-------N  105 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~-------e  105 (279)
                      .+.++|.|+||+|.+|.+++..|+.+|.  +|+++|+++.  .....++....  .++..+. ..+|   +.       +
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   78 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE   78 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence            4557899999999999999999999998  9999998762  22223332211  1121111 1112   11       1


Q ss_pred             hhCCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCceEEEecC
Q 023671          106 ALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  159 (279)
Q Consensus       106 al~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TN  159 (279)
                      .+...|+||+++|....  +  ..+.   ...+..|+.-...+.+.+.+.-  ..+.++++|.
T Consensus        79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            12468999999986422  1  1122   2345566655555555554321  1245665553

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0048  Score=53.84  Aligned_cols=116  Identities=15%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCC---CHHhhh-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQP---QLENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~---d~~eal-----  107 (279)
                      +.++|.|+||+|.+|++++..|+.+|.  ++++++.+..   .....++...  ..++..+. .-.   ++++++     
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAET   79 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8888766441   1122223221  11222211 111   222333     


Q ss_pred             --CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671          108 --TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  159 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN  159 (279)
                        .+.|+||+++|......   .+   -...+..|+.....+++.+.+. .+.+.++++|.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence              36899999998643111   11   1233556665555555554433 24456666653

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=97.29  E-value=0.0026  Score=58.45  Aligned_cols=117  Identities=17%  Similarity=0.119  Sum_probs=75.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH---HhhhhcccCCCeEEEEeC-CCCHHhhhC--CCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTGAVVRGFLG-QPQLENALT--GMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~---~~DL~~~~~~~~v~~~~~-~~d~~eal~--~ADiVIi  115 (279)
                      |++.|+|++||+|+++...+..+....+|+.+|.-.-.|.   ..++.+.+....+++-.+ ...+.+.++  +.|.|++
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            5789999999999999988877766568899997652222   234444332223333111 112234455  6899999


Q ss_pred             ccCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCC-ceEEEec
Q 023671          116 PAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLIS  158 (279)
Q Consensus       116 tag~~~--k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-a~viv~T  158 (279)
                      .|+-.-  +.=....++++.|+-....+.++.+++... -++-+.|
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HIST  126 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHIST  126 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEecc
Confidence            875321  000123578899999999999999998864 3444444

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.29  E-value=0.0015  Score=66.49  Aligned_cols=90  Identities=19%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh--CCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal--~~ADiVIita  117 (279)
                      +.|||.|+||+|++|++++..|..+++  ++... .       .|+.+..            .+...+  .+.|+||++|
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~A  436 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNAA  436 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEECC
Confidence            468999999999999999999988886  55211 1       1111110            011222  2689999999


Q ss_pred             CCCCCC--C---CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 023671          118 GVPRKP--G---MTRDDLFNINAGIVRTLCEGIAKCCPN  151 (279)
Q Consensus       118 g~~~k~--g---~~r~d~~~~N~~i~~~i~~~I~~~~p~  151 (279)
                      +....+  +   ....+.+..|+.....+++.+++....
T Consensus       437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~  475 (668)
T PLN02260        437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL  475 (668)
T ss_pred             cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe
Confidence            864321  1   134567788999999999999987643

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.29  E-value=0.0049  Score=54.60  Aligned_cols=115  Identities=15%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCHH---hh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~~---ea-------l  107 (279)
                      .++|.|+||+|.+|++++..|+..|.  +|+++|.+..  .....++...  ..++..+. .-+|.+   +.       +
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999997  8999998652  1111222211  11222111 112211   11       2


Q ss_pred             CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh----CCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~----~p~a~viv~TN  159 (279)
                      ...|+||+++|......   .+   -.+.+..|+.....+.+.+.++    .+.+.++++|.
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            36799999998632111   11   1234567777777777766544    23455666554

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.29  E-value=0.014  Score=51.36  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++|.|+||+|++|++++..|+.+|.  +|+++|...
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4688999999999999999999997  999999754

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.29  E-value=0.0025  Score=55.40  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++++|.|+||+|.+|+.++..|.++|+  ++.+.....
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~   40 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            356899999999999999999999998  766655543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.28  E-value=0.004  Score=54.63  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++|.|+||+|++|+.++..|+.+|.  +|++++++.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~   35 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE   35 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999998  999999876

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0018  Score=57.48  Aligned_cols=35  Identities=37%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++|.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999997  999999875

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.26  E-value=0.0037  Score=54.49  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~   77 (279)
                      +++|.|+||+|.+|..++..|+..|+  ++++. +++.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~   40 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE   40 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            45899999999999999999998887  88887 8765

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.26  E-value=0.003  Score=59.22  Aligned_cols=63  Identities=21%  Similarity=0.377  Sum_probs=47.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..++|+|||. |.+|+.+|..|...|.  +|+.+|++....  .+.        ++ .  ..++.+++++||+|+++..
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~-~--~~~l~ell~~aDiVil~lP  207 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT-Y--KDSVKEAIKDADIISLHVP  207 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh-c--cCCHHHHHhcCCEEEEeCC
Confidence            4568999998 9999999999988887  999999865210  100        11 1  2357889999999999863

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0022  Score=57.71  Aligned_cols=112  Identities=12%  Similarity=0.053  Sum_probs=63.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhh--------CCCCE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL--------TGMDL  112 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal--------~~ADi  112 (279)
                      ++|.|+||+|.+|..++..|+..|.  +|++.++++...  .++..... ..+.. .....++++++        ...|+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence            4799999999999999999999997  999999875211  11221110 00110 00001111122        25699


Q ss_pred             EEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          113 VIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       113 VIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +|++||.....   ..+   -...+..|+..    .+.+.+.+++... +.|+++|.
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~isS  135 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCSS  135 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEECC
Confidence            99999864321   111   12345566554    6667777765543 45555553

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0029  Score=55.37  Aligned_cols=115  Identities=16%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      +++++.|+|++|.+|..++..|+.+|.  +|+++|+++.  .....++....  ..+..+. ..++.   ..++      
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ   80 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  8999998752  12222222211  1222111 11222   1222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       .+.|++|.++|.....   ..+   -...+..|+.    +.+.+.+.+.+.. .+.++++|.
T Consensus        81 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS  142 (241)
T PRK07454         81 FGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVSS  142 (241)
T ss_pred             cCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             3589999999864321   111   1223445554    4444555555432 345555554

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.005  Score=54.21  Aligned_cols=113  Identities=16%  Similarity=0.207  Sum_probs=62.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-CCCEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENALT-GMDLVI  114 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-~ADiVI  114 (279)
                      ++|.|+||+|.+|..++..|++.|.  +|++.+++...  ....+....  ...+.... .-+|   +.+++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            4799999999999999999999997  88888876521  111111111  11122111 1112   233344 899999


Q ss_pred             EccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          115 IPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       115 itag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +++|.....   ..+..   ..+..|+.    +.+.+.+.+.+... +.|+++|.
T Consensus        79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS  132 (257)
T PRK09291         79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS  132 (257)
T ss_pred             ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence            999865321   11111   22344544    34444455544443 45666553

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0016  Score=58.49  Aligned_cols=111  Identities=14%  Similarity=0.012  Sum_probs=62.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHh-------hhCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------ALTGM  110 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~e-------al~~A  110 (279)
                      ++|.|+||+|.+|++++..|+.+|.  +|++.+++....  .++.+.. ...+..+. ..+|   +.+       .+...
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999997  899999875211  1111110 00111110 0112   111       12467


Q ss_pred             CEEEEccCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671          111 DLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       111 DiVIitag~~~k~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |.||+++|......   .+   -.+.+..|+..    .+.+.+.+++.... .++++|
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs  135 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS  135 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            99999998753211   11   12345566554    45555556654444 444444

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.0051  Score=56.19  Aligned_cols=116  Identities=23%  Similarity=0.164  Sum_probs=66.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|++++++...  ....++........+..+. .-.|.   .+.       
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            346899999999999999999999997  89999987521  1122332111111222211 11121   111       


Q ss_pred             hCCCCEEEEccCCCCCCC-Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g-~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +...|++|++||....+. .+   -...+..|+..    .+.+.+.+++.. .+.|+++|
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS  151 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVS  151 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEEC
Confidence            235899999998642211 11   12234555544    666777766543 34555554

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.25  E-value=0.006  Score=54.44  Aligned_cols=102  Identities=14%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++....... .+.. ...+.. .....+..+.+...|++|++||..
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            4899999999999999999999997  9999998752111110 1111 111111 111112334567899999999874


Q ss_pred             CCCCCch---hhHHHhhHH----HHHHHHHHHHH
Q 023671          121 RKPGMTR---DDLFNINAG----IVRTLCEGIAK  147 (279)
Q Consensus       121 ~k~g~~r---~d~~~~N~~----i~~~i~~~I~~  147 (279)
                      .....+.   .+.+..|+.    +++.+.+.+.+
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~  124 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLELFEDIALN  124 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            3222222   334566665    44444555543

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.25  E-value=0.0027  Score=55.18  Aligned_cols=35  Identities=26%  Similarity=0.478  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++|.|+||+|.+|..++..|..+|+  +|.++++++
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~   39 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE   39 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            46899999999999999999999998  899999876

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.25  E-value=0.0023  Score=56.50  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=31.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |+|.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5899999999999999999999998  999999875

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0037  Score=55.84  Aligned_cols=113  Identities=18%  Similarity=0.140  Sum_probs=64.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------hC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l~  108 (279)
                      ++|.|+||+|.+|..++..|+.+|.  +|++.|++..  .....++....  .++..+. ..+|.   .+.       +.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999999998  8999998752  22222333221  1122111 11121   122       23


Q ss_pred             CCCEEEEccCCCCCC---CCchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~---g~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ..|++|+++|.....   ..+..   ..+..|+    .+.+.+.+.+++.. .+.|+++|.
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS  136 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS  136 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            689999999864321   11111   2345564    34455555555543 345555553

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0041  Score=54.24  Aligned_cols=103  Identities=19%  Similarity=0.313  Sum_probs=61.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhH----HhhhhcccCCCeEEEEeC-CCC---HHhhh--
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV----TADISHMDTGAVVRGFLG-QPQ---LENAL--  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~----~~DL~~~~~~~~v~~~~~-~~d---~~eal--  107 (279)
                      +.++|.|+||+|++|..++..|+.+|.  ++++++....  ...    ..++...  ...+..+.. ..|   +.+.+  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            346899999999999999999999998  8999886431  111    1122111  112222111 112   12222  


Q ss_pred             -----CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHH
Q 023671          108 -----TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIA  146 (279)
Q Consensus       108 -----~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~  146 (279)
                           ...|.||+++|.....   ..+.   ...+..|......+++.+.
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  130 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL  130 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence                 4689999999865321   1111   2345667777777777665

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.24  E-value=0.0023  Score=62.70  Aligned_cols=97  Identities=15%  Similarity=0.174  Sum_probs=62.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC--CCeEEEEeCCCCHHhhhC---CCCEEEEc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALT---GMDLVIIP  116 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~---~ADiVIit  116 (279)
                      .+|+|||. |.+|+++|..|+..|+  +|.++|+++..  +.++.....  ...+..   ++++++.++   ++|+||++
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence            48999998 9999999999999998  99999997621  122222100  111222   346666665   58988887


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  161 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPv  161 (279)
                      .-.               -+.++++++.+..+ .|+.++|..+|-.
T Consensus        74 v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         74 IKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             eCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            521               13344555555544 3677787777643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.24  E-value=0.0013  Score=53.51  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..+..++.|+|| |-+|..++..|...|. .+|.+++++..  .+.+|........+.... .+++.+.+.++|+||.+.
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~--ra~~l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT   83 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPE--RAEALAEEFGGVNIEAIP-LEDLEEALQEADIVINAT   83 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHH--HHHHHHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHH--HHHHHHHHcCccccceee-HHHHHHHHhhCCeEEEec
Confidence            456679999999 9999999999999874 58999998752  222222221122333322 235667789999999987


Q ss_pred             CCC
Q 023671          118 GVP  120 (279)
Q Consensus       118 g~~  120 (279)
                      +.+
T Consensus        84 ~~~   86 (135)
T PF01488_consen   84 PSG   86 (135)
T ss_dssp             STT
T ss_pred             CCC
Confidence            654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0056  Score=54.75  Aligned_cols=117  Identities=14%  Similarity=0.097  Sum_probs=65.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------  108 (279)
                      .++|.|+||+|++|+.++..|+.+|+  +|+++++++  ......++.......++..+. .-.|   +.+.++      
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999998  999999865  222222332211011222211 1112   122222      


Q ss_pred             -CCCEEEEccCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          109 -GMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       109 -~ADiVIitag~~~k~----g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                       ..|++|+++|.....    ..+.   .+.+..|+.....+.+.+.+.   ...+.++++|.
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS  146 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS  146 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence             689999999854221    1121   223445655555555444332   23456666553

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0034  Score=55.99  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|.|+||+|.+|.+++..|+.+|.  +|++.+++.
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~   38 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP   38 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            34799999999999999999999997  899999875

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0052  Score=53.90  Aligned_cols=36  Identities=28%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+++.|+||+|.+|+.++..|+..|.  +|++++++.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   39 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA   39 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence            345899999999999999999999987  899999875

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.22  E-value=0.0044  Score=54.14  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal-------  107 (279)
                      .+++.|+|++|.+|.+++..|+.+|.  +|++++++..  .....++...  ..++..+.. .++   +.+++       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  9999998751  1122233221  122332211 112   22222       


Q ss_pred             CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNP  160 (279)
                      .+.|+||+++|......   .+.   ...+..|+.-...+.+.+.+.   ...+.+++++..
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~  144 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISST  144 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcch
Confidence            37999999998643211   111   223555655444444444322   223445555543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.22  E-value=0.0041  Score=56.96  Aligned_cols=65  Identities=26%  Similarity=0.320  Sum_probs=43.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HH--hhhhcccCCCeEEEEeCCCC-HHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VT--ADISHMDTGAVVRGFLGQPQ-LENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g---~~--~DL~~~~~~~~v~~~~~~~d-~~eal~~ADiVI  114 (279)
                      +++|+|+|. |.+|.+++..|...|+  .+.+++.+...+   .+  +++.+..          +.+ ..++.++||+||
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~~----------~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDEL----------TVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccccc----------ccchhhhhcccCCEEE
Confidence            569999998 9999999999999999  555555544111   11  2222211          112 246788999999


Q ss_pred             EccC
Q 023671          115 IPAG  118 (279)
Q Consensus       115 itag  118 (279)
                      ++..
T Consensus        70 vavP   73 (279)
T COG0287          70 VAVP   73 (279)
T ss_pred             Eecc
Confidence            9864

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0056  Score=54.53  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA   40 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999998  999999875

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0064  Score=53.70  Aligned_cols=114  Identities=17%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.++++  ......++.+..  .++..+. ...+   ..+.       +
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999998  899999875  222223333321  1222211 1112   1122       2


Q ss_pred             CCCCEEEEccCCCC--CC--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~--k~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|++||...  .+  ..+.   ...+..|+.    ..+.+.+.+.+.. .+.+++++.
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS  143 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST  143 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            36899999998632  11  1122   234566653    5555566665543 345555553

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.20  E-value=0.0022  Score=58.85  Aligned_cols=66  Identities=18%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +||++||- |.+|+.+|..|+..|+  ++..+|+++.+. +..+.....    ..   ..+..++.++||+||.+..
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga----~~---a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA----TV---AASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC----cc---cCCHHHHHHhCCEEEEecC
Confidence            48999998 9999999999999999  999999986332 222333211    11   1244688999999999864

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.20  E-value=0.002  Score=60.44  Aligned_cols=93  Identities=20%  Similarity=0.260  Sum_probs=60.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..|...|.  +|..+|+........  .. .    .. .   .++.+.+++||+|+++..
T Consensus       148 L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-~----~~-~---~~l~ell~~aDiV~l~lP  213 (333)
T PRK13243        148 VYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-G----AE-Y---RPLEELLRESDFVSLHVP  213 (333)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-C----CE-e---cCHHHHHhhCCEEEEeCC
Confidence            34679999999 9999999999988887  999999864211111  11 0    11 1   256788999999999873


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..  + .        +-.++.+  +.+....|++++|+++
T Consensus       214 ~t--~-~--------T~~~i~~--~~~~~mk~ga~lIN~a  240 (333)
T PRK13243        214 LT--K-E--------TYHMINE--ERLKLMKPTAILVNTA  240 (333)
T ss_pred             CC--h-H--------HhhccCH--HHHhcCCCCeEEEECc
Confidence            22  1 1        1111211  2333345889999985

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0066  Score=54.26  Aligned_cols=118  Identities=18%  Similarity=0.200  Sum_probs=65.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------  106 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++....  .++..+. ..++   +.+.       
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~   83 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE   83 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999865  222222332211  1111111 1112   2222       


Q ss_pred             hCCCCEEEEccCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHh--CCCceEEEecCCC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNPV  161 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TNPv  161 (279)
                      +...|++|+++|.....   ..+..   ..+..|+.-...+.+...+.  .+++.|+++|.+.
T Consensus        84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            23579999998753211   11222   23445655444444444332  1346677766543

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.19  E-value=0.0071  Score=53.64  Aligned_cols=115  Identities=21%  Similarity=0.305  Sum_probs=65.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~~  109 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++++.++.......+...  ..++..+. .-++   ..+.       +..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            45889999999999999999999998  99999875422222222221  11222111 1112   2222       235


Q ss_pred             CCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .|++|++||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.|++++.
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS  143 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS  143 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence            79999999874321   1111   223445543    45556666655443466666654

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0032  Score=55.51  Aligned_cols=114  Identities=19%  Similarity=0.318  Sum_probs=64.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      +.++|.|+||+|.+|.+++..|+++|.  +|++.+++.. .....++..    ..+..+. ...+   +.+.       +
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   87 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAF   87 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            345899999999999999999999997  8999998752 111222211    1111110 1112   1111       2


Q ss_pred             CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      ...|+||+++|......   .+.   ...+..|+.-...+.+.+.+.   ...+.++++|.
T Consensus        88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  148 (255)
T PRK06841         88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS  148 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            36799999998643211   111   224556665555555554432   22355665553

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=97.19  E-value=0.0052  Score=53.28  Aligned_cols=113  Identities=17%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------CC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  109 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~~  109 (279)
                      |.|+|++|.+|+.++..|+++|+  +|++++.+.   ......++.+..  .++.... .-+|   +.+.+       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999998  899998764   112223333221  1122111 1112   22222       34


Q ss_pred             CCEEEEccCCCCCC---CC---chhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCC
Q 023671          110 MDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  160 (279)
Q Consensus       110 ADiVIitag~~~k~---g~---~r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNP  160 (279)
                      .|+||+++|.....   +.   ...+.+..|+.....+.+.+.++   ...+.++++|..
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  136 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV  136 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            69999999864221   11   12345667777666666666543   223456665543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.18  E-value=0.0016  Score=60.27  Aligned_cols=79  Identities=20%  Similarity=0.280  Sum_probs=50.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-------------hhhhcccCCCeEEEEeCCCCHHhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-------------ADISHMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~-------------~DL~~~~~~~~v~~~~~~~d~~eal  107 (279)
                      ++||+-||| |+||......++.+=.--+|.++|++..+-.+             .|........++-.   ++|.+.++
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlff---stdiekai   76 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFF---STDIEKAI   76 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceee---ecchHHHh
Confidence            469999999 99998776544433222399999998621110             11221112233332   35889999


Q ss_pred             CCCCEEEEccCCCCCC
Q 023671          108 TGMDLVIIPAGVPRKP  123 (279)
Q Consensus       108 ~~ADiVIitag~~~k~  123 (279)
                      +.||+|++....|.|.
T Consensus        77 ~eadlvfisvntptkt   92 (481)
T KOG2666|consen   77 KEADLVFISVNTPTKT   92 (481)
T ss_pred             hhcceEEEEecCCccc
Confidence            9999999998887654

>PLN02256 arogenate dehydrogenase

Probab=97.16  E-value=0.0041  Score=57.66  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=45.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh-CCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal-~~ADiVIita  117 (279)
                      +++||+|||+ |.+|..++..|...|.  +|+.+|.+.....+.++   .    +..   .++..+.+ .++|+||++.
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEEec
Confidence            5679999998 9999999999988886  89999987522112211   1    111   12455555 4799999986

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.16  E-value=0.0031  Score=58.06  Aligned_cols=64  Identities=16%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC---CCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~---ADiVIita  117 (279)
                      |||+|||. |.+|++++..|...++  +|.++|+++..  ...+.+..    ...   ..++++.+++   +|+||++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence            48999998 9999999999999887  89999987521  12222211    111   2345565555   69999985

>PRK09186 flagellin modification protein A; Provisional

Probab=97.16  E-value=0.0066  Score=53.43  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.++|.|+||+|.+|.+++..|+..|+  +|++.++++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            456899999999999999999999998  899998865

>PRK08219 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0034  Score=54.05  Aligned_cols=75  Identities=21%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeE-EE-EeCCCCHHhhhC---CCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV-RG-FLGQPQLENALT---GMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v-~~-~~~~~d~~eal~---~ADiVIi  115 (279)
                      ++++.|+||+|++|..++..|+++ .  +|+++|++...  ..++.+......+ .. .....++.++++   +.|+||+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            468999999999999999999887 5  89999986521  1122211100111 11 010112334443   6999999


Q ss_pred             ccCCC
Q 023671          116 PAGVP  120 (279)
Q Consensus       116 tag~~  120 (279)
                      ++|..
T Consensus        78 ~ag~~   82 (227)
T PRK08219         78 NAGVA   82 (227)
T ss_pred             CCCcC
Confidence            99864

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0093  Score=52.28  Aligned_cols=78  Identities=24%  Similarity=0.279  Sum_probs=49.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------HhhhC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal~  108 (279)
                      +++.|+||+|.+|.+++..|+.+|.  +|++.+++.  ......++........+.... ..++.          .+.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999986  899999876  222222332211112222211 11222          11234


Q ss_pred             CCCEEEEccCCCC
Q 023671          109 GMDLVIIPAGVPR  121 (279)
Q Consensus       109 ~ADiVIitag~~~  121 (279)
                      ..|++|+++|...
T Consensus        81 ~id~vi~~ag~~~   93 (248)
T PRK08251         81 GLDRVIVNAGIGK   93 (248)
T ss_pred             CCCEEEECCCcCC
Confidence            6899999998753

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.15  E-value=0.0018  Score=52.91  Aligned_cols=116  Identities=18%  Similarity=0.189  Sum_probs=70.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHh-----hhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-----DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~-----DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |+|+|+ |.+|..+|..|.+.+.  +|.+++..+ .....     .+........+.......+..+....+|+||+|.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789999 9999999999999888  999999865 11111     11111101111111111221246789999999962


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      ..    +            .++.++.++.+. |++.++.+-|=++....     +.+  -+|+.+|++-
T Consensus        77 a~----~------------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~-----l~~--~~~~~~v~~g  122 (151)
T PF02558_consen   77 AY----Q------------LEQALQSLKPYLDPNTTIVSLQNGMGNEEV-----LAE--YFPRPRVLGG  122 (151)
T ss_dssp             GG----G------------HHHHHHHHCTGEETTEEEEEESSSSSHHHH-----HHC--HSTGSGEEEE
T ss_pred             cc----c------------hHHHHHHHhhccCCCcEEEEEeCCCCcHHH-----HHH--HcCCCcEEEE
Confidence            11    1            345666677765 67788888888876543     232  2566778664

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0049  Score=56.14  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=69.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh---
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL---  107 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal---  107 (279)
                      ..+.++|.|+||+|.+|++++..|+..|.  +|+++++++.   ......+...  ..++..+. ...+   +.+.+   
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i  118 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEET  118 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHH
Confidence            34456899999999999999999999997  9999998752   1122222211  11222211 1112   11222   


Q ss_pred             ----CCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671          108 ----TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  159 (279)
Q Consensus       108 ----~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN  159 (279)
                          ...|+||++||....  +  ..+.   ...+..|+.....+++.+.+. .+.+.+|++|.
T Consensus       119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence                357999999986321  1  1111   235667777777777776654 34456666654

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0074  Score=53.28  Aligned_cols=110  Identities=13%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCC---CHHhhh-------C
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENAL-------T  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~---d~~eal-------~  108 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++... .   ..    ...+..+. ...   ++.+.+       .
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~-~---~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   74 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE-T---VD----GRPAEFHAADVRDPDQVAALVDAIVERHG   74 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh-h---hc----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999998  99999986521 0   00    01111110 011   122223       3


Q ss_pred             CCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHH----hCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~----~~p~a~viv~TN  159 (279)
                      ..|+||+++|.....   ..+   ....+..|+.....+.+.+.+    ....+.++++|.
T Consensus        75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  135 (252)
T PRK07856         75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS  135 (252)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            469999999864211   111   123455666555555554433    223356666654

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0026  Score=56.26  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.++|.|+||+|.+|.+++..|++.|.  +|+++|++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            346899999999999999999999997  999999875

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.13  E-value=0.0045  Score=57.05  Aligned_cols=115  Identities=14%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      ++++|.|+||+|.+|..++..|+..|.  +|++.++++.  .....++...  ...+..+. .-+|   ..+.+      
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL   80 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            355899999999999999999999997  8999998752  2222333211  11222211 1112   12222      


Q ss_pred             -CCCCEEEEccCCCCC----CCCch---hhHHHhhHH----HHHHHHHHHHHhCC-CceEEEec
Q 023671          108 -TGMDLVIIPAGVPRK----PGMTR---DDLFNINAG----IVRTLCEGIAKCCP-NATVNLIS  158 (279)
Q Consensus       108 -~~ADiVIitag~~~k----~g~~r---~d~~~~N~~----i~~~i~~~I~~~~p-~a~viv~T  158 (279)
                       ...|++|++||....    ...+.   ...+..|..    +.+.+.+.+.+... .+.|+++|
T Consensus        81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence             248999999986321    11222   234556654    45555555555432 24555554

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.13  E-value=0.0055  Score=56.96  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=60.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..++|+|+|. |.+|+.+|..|..-|.  +|..+|......  ..         +..+....++++.+++||+|+++...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~~---------~~~~~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--PG---------VQSFAGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--CC---------ceeecccccHHHHHhcCCEEEECCCC
Confidence            3469999998 9999999999998888  999999754110  00         00011123678899999999998632


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .           ..+..++.  .+.+.+..|++++|+++
T Consensus       201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             C-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence            2           11222221  23444455889999975

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.12  E-value=0.0095  Score=52.78  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++++.++
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~   49 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT   49 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            46899999999999999999999998  899998864

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.12  E-value=0.0075  Score=53.42  Aligned_cols=115  Identities=15%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~~  109 (279)
                      .+.+.|+|++|.+|..++..|+..|.  +|+++|..+......++....  ..+..+. ..+|   +.+.+       ..
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            45789999999999999999999997  899888755322222232211  1122111 1112   12222       36


Q ss_pred             CCEEEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .|++|++||.....   ..+   -.+.+..|+..    .+.+.+.+.+..+.+.++++|.
T Consensus        86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            89999999874311   111   12345556543    4444455544444566666654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=97.10  E-value=0.0027  Score=57.27  Aligned_cols=33  Identities=12%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ||.|+||+|++|++++..|+..|+  +|....++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~   33 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS   33 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            588999999999999999999887  899998875

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0092  Score=52.51  Aligned_cols=115  Identities=17%  Similarity=0.189  Sum_probs=62.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D-~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      .++|.|+||+|.+|++++..|+.+|.  ++++.+ +++.  .....++....  ..+..+. .-.|.   .+++      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999987  777653 4331  11112222111  1122111 11121   1112      


Q ss_pred             -------CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          108 -------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       108 -------~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                             .+.|+||+++|......   .+.   ...+..|+.....+.+.+.+.. ..+.++++|.
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                   25899999998643211   111   2334567766666666665542 2245555543

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0086  Score=55.21  Aligned_cols=115  Identities=22%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---H-------hh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---E-------NA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~-------ea  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.++++.  .....++........+..+. .-.|+   .       +.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999997  9999998762  22223333221111222211 11121   1       11


Q ss_pred             hCCCCEEEEccCCCCCCC--Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKPG--MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g--~~---r~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....|++|+.||....+.  .+   -...+..|.    .+.+.+.+.+.+.  .+.|+++|
T Consensus        91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vs  149 (313)
T PRK05854         91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQS  149 (313)
T ss_pred             CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEe
Confidence            245899999998643211  11   122344453    3455666666543  34455544

>PRK08589 short chain dehydrogenase; Validated

Probab=97.10  E-value=0.014  Score=52.44  Aligned_cols=115  Identities=16%  Similarity=0.224  Sum_probs=65.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++ ......++.+..  .++..+. .-++   ..+.       +
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999997  999999874 222233333221  1122111 1112   1111       2


Q ss_pred             CCCCEEEEccCCCCCCC----Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecCC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      ...|++|++||.....+    .+.   ...+..|+    .+.+.+.+.+.+.  .+.|++++..
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~  142 (272)
T PRK08589         81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF  142 (272)
T ss_pred             CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence            35799999998753211    111   12233444    3445566666543  3667666643

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.09  E-value=0.0046  Score=54.60  Aligned_cols=35  Identities=29%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~   43 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA   43 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence            45899999999999999999999997  999999875

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0077  Score=53.18  Aligned_cols=116  Identities=14%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~e-v~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea------  106 (279)
                      +.++|.|+||+|.+|..++..|...|.  + |+++|++..  .....++...  ...+..+. .-++.   .+.      
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE   80 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998886  6 999998652  2222223211  12222111 11121   111      


Q ss_pred             -hCCCCEEEEccCCCCCC---CCchh---hHHHhhHHHH----HHHHHHHHHhCCCceEEEecC
Q 023671          107 -LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 -l~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TN  159 (279)
                       +.+.|++|+++|.....   ..+..   ..+..|+.-.    +...+.+.+....+.++++|.
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence             23689999999875322   11222   2345555443    344444444333455665553

>PLN00016 RNA-binding protein; Provisional

Probab=97.09  E-value=0.0048  Score=58.40  Aligned_cols=36  Identities=25%  Similarity=0.140  Sum_probs=32.7

Q ss_pred             CCcEEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAIL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~II----GA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++||.|+    ||+|++|++++..|+..|+  +|.+++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            35689999    9999999999999999998  999999875

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0073  Score=52.84  Aligned_cols=100  Identities=20%  Similarity=0.199  Sum_probs=60.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH----------Hhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  .....++.     ..+..+. ...|.          .+.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  8999998751  11111111     1111111 11121          1123


Q ss_pred             CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHH
Q 023671          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAK  147 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~  147 (279)
                      ...|+||+++|.....   ..+.   ...+..|+.....+.+.+.+
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  124 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLP  124 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4689999999864321   1122   23466777766666666664

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.08  E-value=0.0048  Score=58.69  Aligned_cols=57  Identities=23%  Similarity=0.198  Sum_probs=43.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+||+|||.+|.+|.+++..|.... ..+|+.+|..          +..          ..+..+.+++||+||++..
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilavP   60 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DPG----------SLDPATLLQRADVLIFSAP   60 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeCC
Confidence            4599999998999999999998752 3389999863          110          1245677999999999963

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=97.08  E-value=0.0076  Score=52.81  Aligned_cols=115  Identities=13%  Similarity=0.205  Sum_probs=63.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .+++.|+||+|.+|++++..|+..|.  ++++.+...   ......++.+..  .++..+. ...+   +.+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999887  777665432   122223333211  1222221 1112   12222      


Q ss_pred             -CCCCEEEEccCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g------~~r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                       ...|+||+++|......      ..-.+.+..|+.-...+.+.+.+.   ...+.++++|.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             34799999998743221      112344566766555555555432   23445555554

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.06  E-value=0.0036  Score=55.29  Aligned_cols=117  Identities=12%  Similarity=0.148  Sum_probs=66.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. ..++   +.+++      
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999997  999999875  222223333211  1122211 1112   22222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHH----HHHHHhCCCceEEEecCCC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~----~~I~~~~p~a~viv~TNPv  161 (279)
                       ...|++|+++|.....   ..+.   ...+..|+.-...++    +.+.+. ..+.++++|...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEeech
Confidence             3469999999864321   1111   224556655444444    444333 345666666543

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0089  Score=53.25  Aligned_cols=115  Identities=14%  Similarity=0.125  Sum_probs=66.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal----  107 (279)
                      +.++|.|+||+|.+|..++..|+.++ .  .|+++++++.   .....++.... ..++..+. ..+|   ..+.+    
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            45689999999999999999998875 6  8999998752   22233343321 11222211 1111   11112    


Q ss_pred             --CCCCEEEEccCCCCCCCC---ch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          108 --TGMDLVIIPAGVPRKPGM---TR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g~---~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                        .+.|++|+++|.......   +.   .+.+..|+.    +.+.+.+.+.+... +.++++|
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is  145 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS  145 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence              379999999887532211   11   123566653    34567777766554 4455554

>PRK06196 oxidoreductase; Provisional

Probab=97.06  E-value=0.0063  Score=55.97  Aligned_cols=110  Identities=21%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCH---Hhh-------hC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL---ENA-------LT  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~---~ea-------l~  108 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++..  .....++....   .+..  .-+|.   .+.       +.
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~--Dl~d~~~v~~~~~~~~~~~~   98 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVML--DLADLESVRAFAERFLDSGR   98 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEc--cCCCHHHHHHHHHHHHhcCC
Confidence            45899999999999999999999998  9999998752  11112222110   0110  01121   111       24


Q ss_pred             CCCEEEEccCCCCCCC-C---chhhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          109 GMDLVIIPAGVPRKPG-M---TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       109 ~ADiVIitag~~~k~g-~---~r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +.|++|++||....+. .   .-...+..|..    +.+.+.+.+.+.. .+.|+++|
T Consensus        99 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS  155 (315)
T PRK06196         99 RIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS  155 (315)
T ss_pred             CCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence            6899999998643221 1   11223445544    4666666666543 35566555

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0052  Score=54.27  Aligned_cols=34  Identities=32%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++.|+||+|.+|..++..|+.+|.  +|+++|++.
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~   36 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA   36 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999887  899999875

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.05  E-value=0.0012  Score=60.39  Aligned_cols=106  Identities=21%  Similarity=0.255  Sum_probs=71.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--chhHHhhhhccc--CCCeEEEEeCCCCHHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~----~~~-----~ev~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~~~d~~ea  106 (279)
                      +..||.|.|| |..|..++..|...    |+-     .+++++|.+-  ..+. .|+.+..  ...+... ....++.|+
T Consensus        24 ~d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l~~~~~~~a~~~~~-~~~~~L~e~  100 (279)
T cd05312          24 SDQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEE-KEGKSLLEV  100 (279)
T ss_pred             hhcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC-CcchHHHHHHHhhcCc-ccCCCHHHH
Confidence            3469999999 99999999877654    652     5999999865  1111 1122111  0000000 012478999


Q ss_pred             hC--CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          107 LT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       107 l~--~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      ++  ++|++|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..
T Consensus       101 i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312         101 VKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            99  999998876543   2           125688999999999999999999986

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.04  E-value=0.0045  Score=57.42  Aligned_cols=120  Identities=23%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH---HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV---TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~---~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|+|+ |.||+-+++.|.+.|.  .|.++-+.+. ...   -+.+.+........... +.+ .+....+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence            69999999 9999999999999993  6677665541 111   12222221101111111 222 46678999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCee-eecch
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTML  189 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kVi-G~t~l  189 (279)
                      -    ..+            ..+.++.+.... |+++|+..-|=++..-     .+++  .+|+++|+ |+|..
T Consensus        76 K----a~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~~e-----~l~~--~~~~~~il~G~~~~  126 (307)
T COG1893          76 K----AYQ------------LEEALPSLAPLLGPNTVVLFLQNGLGHEE-----ELRK--ILPKETVLGGVTTH  126 (307)
T ss_pred             c----ccc------------HHHHHHHhhhcCCCCcEEEEEeCCCcHHH-----HHHH--hCCcceEEEEEeee
Confidence            2    211            446666777665 6778888888887764     2333  35555554 46543

>PRK06128 oxidoreductase; Provisional

Probab=97.04  E-value=0.0092  Score=54.46  Aligned_cols=115  Identities=23%  Similarity=0.254  Sum_probs=67.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHhhhhcccCCCeEEEEe-CCCC---HHh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFL-GQPQ---LEN-------  105 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~----~g~~~DL~~~~~~~~v~~~~-~~~d---~~e-------  105 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+.+..    ......+....  .++..+. .-.+   ..+       
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999997  8888776431    11122222211  1122111 1112   111       


Q ss_pred             hhCCCCEEEEccCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          106 ALTGMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       106 al~~ADiVIitag~~~--k~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      .+...|++|++||...  .+  ..+   -...+..|+.....+++.+.+.- +.+.|+++|.
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            2346899999998642  11  112   23456677776666666666543 3456666554

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0076  Score=53.23  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHh-------hh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------AL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~e-------al  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++.  .+....++.+..  .++..+. ..+|   ..+       .+
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999998  999999875  222222333221  1222211 1112   111       13


Q ss_pred             CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ...|++|+++|.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.+++++
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            4789999999864321   1111   123445544    4444445554443345566554

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.03  E-value=0.0091  Score=61.17  Aligned_cols=116  Identities=20%  Similarity=0.218  Sum_probs=64.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------  108 (279)
                      .++|.|+||+|.+|..++..|++.|.  +|++.|++.  ......++........+..+. .-+|   ..++++      
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~  491 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY  491 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999997  999999876  222222332111001111111 1112   222232      


Q ss_pred             -CCCEEEEccCCCCCC---CCchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEec
Q 023671          109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       109 -~ADiVIitag~~~k~---g~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                       +.|++|++||.....   ..+..   ..+..|+    .+.+...+.+.+....+.++++|
T Consensus       492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iS  552 (676)
T TIGR02632       492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIA  552 (676)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             689999999964321   11111   1223333    23455666666554445555544

>PRK08264 short chain dehydrogenase; Validated

Probab=97.03  E-value=0.011  Score=51.44  Aligned_cols=113  Identities=13%  Similarity=0.099  Sum_probs=63.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE----eCCCCHHhhh---CCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENAL---TGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~~~d~~eal---~~ADiV  113 (279)
                      .++|.|+||+|.+|+.++..|+.+|. .+|++++++......     .  ...+..+    ...+++.+.+   ...|+|
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~-----~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD-----L--GPRVVPLQLDVTDPASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh-----c--CCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            45899999999999999999998884 478999886521110     1  0111111    1111222223   358999


Q ss_pred             EEccCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCCC
Q 023671          114 IIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  161 (279)
Q Consensus       114 Iitag~~~k~----g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNPv  161 (279)
                      |+++|.....    ..+.   .+.+..|......+.+.+.+.   ...+.++++|...
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  135 (238)
T PRK08264         78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL  135 (238)
T ss_pred             EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence            9999873211    1111   233455665555555554332   2345566666433

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.03  E-value=0.0025  Score=54.70  Aligned_cols=77  Identities=19%  Similarity=0.225  Sum_probs=49.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEE--eCCCCHHhhhCCCCEEE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF--LGQPQLENALTGMDLVI  114 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~--~~~~d~~eal~~ADiVI  114 (279)
                      .+.+++.|+|++|.+|..++..|...+.  +|.+++++..  .....++.+.. ...+...  ....++.++++++|+||
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            3557999999889999999999988875  9999988652  22222232211 1222221  11123347789999988


Q ss_pred             EccC
Q 023671          115 IPAG  118 (279)
Q Consensus       115 itag  118 (279)
                      .+..
T Consensus       103 ~at~  106 (194)
T cd01078         103 AAGA  106 (194)
T ss_pred             ECCC
Confidence            8754

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0048  Score=56.09  Aligned_cols=97  Identities=14%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||++||+ |.+|..++..|...+.  ..+|+..|+++.+.  .++..... .  ..   +++..++...+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~~~~g-~--~~---~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALAAEYG-V--VT---TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHHHHcC-C--cc---cCcHHHHHhhCCEEEEEe-
Confidence            469999999 9999999999998882  35888888765211  12332211 1  11   234467889999999987 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                         ||            ..+.++++.++...++.+||-+.=.+.
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               44            236677777776445666766654543

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.016  Score=50.92  Aligned_cols=114  Identities=21%  Similarity=0.180  Sum_probs=64.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCC-eEEE-EeCCCCHHhhhC----CCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-VVRG-FLGQPQLENALT----GMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~-~v~~-~~~~~d~~eal~----~ADiVIi  115 (279)
                      .++.|+||+|.+|..++..|+.+|.  +|+++|+++...  .++.+..... .+.. .+..++++++++    ..|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            4799999999999999999999997  899999875211  1111111011 1111 111112223333    2478888


Q ss_pred             ccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          116 PAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       116 tag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      .+|.....   ..+.   .+.+..|......+.+.+...- +...+++++.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            88743211   1122   2346677777777776666542 3345555543

>TIGR02415 23BDH acetoin reductases

Probab=97.02  E-value=0.0043  Score=54.59  Aligned_cols=112  Identities=17%  Similarity=0.294  Sum_probs=64.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTG  109 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~~  109 (279)
                      ++.|+|++|.+|..++..|++.|.  +|++++.++  ......++....  ..+..+. .-+|   +.++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            688999999999999999999997  899999865  222222333221  1222211 1112   1112       235


Q ss_pred             CCEEEEccCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          110 MDLVIIPAGVPRK-P--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       110 ADiVIitag~~~k-~--g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .|+||+++|.... +  +.+..   ..+..|+.    +++.+.+.+++....+.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            7999999986421 1  22222   23445543    3445556666555445666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.02  E-value=0.0037  Score=55.37  Aligned_cols=71  Identities=23%  Similarity=0.253  Sum_probs=46.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhh-hhcccCCCeEEEEeCC--CCHHhh-hCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFLGQ--PQLENA-LTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~D-L~~~~~~~~v~~~~~~--~d~~ea-l~~ADiVIita  117 (279)
                      |+++|+|+ |.+|+++|..|...|+  +|+++|.++..  +.. +.+.. ...+.....+  +-++++ +.++|++|.+.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~-~~~~v~gd~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADEL-DTHVVIGDATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhc-ceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence            68999999 9999999999999998  99999998721  111 11110 1111111111  123344 68999999986


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      |
T Consensus        75 ~   75 (225)
T COG0569          75 G   75 (225)
T ss_pred             C
Confidence            4

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=97.01  E-value=0.0037  Score=57.17  Aligned_cols=201  Identities=21%  Similarity=0.224  Sum_probs=110.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~  119 (279)
                      |||.|+|++|++|+.+...|. .+.  +|+-.|..+     +|+.+..            .+.+.++  .-|+||+||+.
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            569999999999999998887 445  778777643     4444432            1334454  45999999986


Q ss_pred             CCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-CCC--Cch-HHHHHHHHHHhCCCCCCCeeeecchhHHH
Q 023671          120 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV--NST-VPIAAEVFKKAGTYDPKKLLGVTMLDVVR  193 (279)
Q Consensus       120 ~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-NPv--d~~-t~~~~~~~~~~~~~~~~kViG~t~lds~R  193 (279)
                      ..-  ...++..-+..|+.....+++...+.+  +++|.+| --|  +.- .+     ++..---.|..++|-+.+-...
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~-----Y~E~D~~~P~nvYG~sKl~GE~  133 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGP-----YKETDTPNPLNVYGRSKLAGEE  133 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCC-----CCCCCCCCChhhhhHHHHHHHH
Confidence            532  233455567889999999999999865  3444443 222  000 00     0000002244566655432221


Q ss_pred             HHHHHHHHcCCCCCCC---cceeecCCCCceee-eecccCCCCC-----------CCCHHHHHHHHHHHHhhHHH--HHh
Q 023671          194 ANTFVAEVLGLDPRDV---DVPVVGGHAGVTIL-PLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTE--VVE  256 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V---~~~ViGehg~~~~v-p~~S~~~v~~-----------~~~~~~~~~i~~~v~~~~~~--i~~  256 (279)
                      +    .+..  .|..+   ..||+|++|. +.+ +.+..+.-+.           +.+-.++.+...++-....+  ++-
T Consensus       134 ~----v~~~--~~~~~I~Rtswv~g~~g~-nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH  206 (281)
T COG1091         134 A----VRAA--GPRHLILRTSWVYGEYGN-NFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGGVYH  206 (281)
T ss_pred             H----HHHh--CCCEEEEEeeeeecCCCC-CHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccccCcEEE
Confidence            1    1222  23333   4889999996 433 4444444321           23344443333222221211  222


Q ss_pred             hhcCCC-cchHHHHHHHHHHHh
Q 023671          257 AKAGAG-SATLSMRLNLRMHAS  277 (279)
Q Consensus       257 ~k~g~g-s~~~s~A~a~~~~~~  277 (279)
                      +- +.| +++|-.|..+.+...
T Consensus       207 ~~-~~g~~Swydfa~~I~~~~~  227 (281)
T COG1091         207 LV-NSGECSWYEFAKAIFEEAG  227 (281)
T ss_pred             Ee-CCCcccHHHHHHHHHHHhC
Confidence            11 333 468888988887653

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.01  E-value=0.0053  Score=55.37  Aligned_cols=90  Identities=14%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~--~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .|||+|||+ |.+|++++..|...+..  .+++.+|.++..     +       ....   ..+..+.++++|+||++. 
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav-   65 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV-   65 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence            369999998 99999999999887743  358888875421     0       0111   123456788999999985 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                         +|            ..++++++.+..+-++..+|...+-+.
T Consensus        66 ---kp------------~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 ---KP------------DLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             ---CH------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence               22            224455555554433345566666665

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.01  E-value=0.0055  Score=56.42  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC---CCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~---ADiVIita  117 (279)
                      |||+|||. |.+|+.++..|+..++  +|.++|+++..  ..++.+..    +..   ..++.+..+.   +|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            48999998 9999999999999987  99999997521  12222211    111   1244454554   69999975

>PLN02712 arogenate dehydrogenase

Probab=97.00  E-value=0.0053  Score=62.75  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             Ccccchhhhhhhhcc---------CCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCC
Q 023671           21 PNLQNSCLRQAKCRA---------KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG   91 (279)
Q Consensus        21 ~~~~~~~~~~~~~~~---------~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~   91 (279)
                      |.|+.||=.+...+-         ++..+++||+|||. |.+|..++..|...|+  +|..+|.+.....+.++   .  
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G--   94 (667)
T PLN02712         23 PRLSLSIKSQSATATDKQPLPNSNPDNTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G--   94 (667)
T ss_pred             chhhhhhcccccccCCCCCCCCCCCccCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C--
Confidence            445555555444332         34455689999998 9999999999998886  89999986422111111   1  


Q ss_pred             CeEEEEeCCCCHHhhh-CCCCEEEEcc
Q 023671           92 AVVRGFLGQPQLENAL-TGMDLVIIPA  117 (279)
Q Consensus        92 ~~v~~~~~~~d~~eal-~~ADiVIita  117 (279)
                        +..   .++..+.+ ++||+||++.
T Consensus        95 --v~~---~~d~~e~~~~~aDvViLav  116 (667)
T PLN02712         95 --VSF---FLDPHDLCERHPDVILLCT  116 (667)
T ss_pred             --CEE---eCCHHHHhhcCCCEEEEcC
Confidence              121   12445534 5799999986

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.00  E-value=0.0025  Score=55.86  Aligned_cols=95  Identities=14%  Similarity=0.168  Sum_probs=60.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVPRK  122 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~~k  122 (279)
                      |+|+||+|.+|++++..|+..++  +|..+=++........+.+... .-+.. +...+.+.++++|+|.||++.+... 
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSH-   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence            78999999999999999999776  7888776652223333443321 11111 1111346678999999999875432 


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCC
Q 023671          123 PGMTRDDLFNINAGIVRTLCEGIAKCCPN  151 (279)
Q Consensus       123 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~  151 (279)
                        .       .-.+..+.++++.++.+-+
T Consensus        77 --~-------~~~~~~~~li~Aa~~agVk   96 (233)
T PF05368_consen   77 --P-------SELEQQKNLIDAAKAAGVK   96 (233)
T ss_dssp             --C-------CHHHHHHHHHHHHHHHT-S
T ss_pred             --h-------hhhhhhhhHHHhhhccccc
Confidence              1       1234556778888877644

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.00  E-value=0.0055  Score=56.81  Aligned_cols=101  Identities=19%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      .+.+||+|+|+ |.+|..++..|...+ ..+|.++|++..  ...+..+.     ..+..   .+++++++.++|+||.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a  245 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA  245 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence            45679999999 999999998887755 348999998752  22222221     11111   12466788999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHH-HHh-CCCceEEEecCCCCchH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVNSTV  165 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I-~~~-~p~a~viv~TNPvd~~t  165 (279)
                      .+.+..                .++.+.+ +.. .+..+++-+++|-|+=.
T Consensus       246 t~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi~~  280 (311)
T cd05213         246 TGAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDIEP  280 (311)
T ss_pred             CCCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCCch
Confidence            865521                1222222 212 23567888899998643

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.02  Score=50.72  Aligned_cols=117  Identities=22%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.......++..+. .-+|   +.+.+      
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  899999876  222233333211111222211 1112   22222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|+++|.....   ..+..   ..+..|+.    +.+...+.+.+.. .+.|+++|.
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  145 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIAS  145 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECC
Confidence             3689999999864211   11111   23444544    3455555554433 355666554

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0067  Score=53.77  Aligned_cols=36  Identities=31%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+++.|+||+|.+|+.++..|+.+|.  +|+++++++
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~   40 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA--NLILLDISP   40 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence            346899999999999999999999998  899999875

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.99  E-value=0.01  Score=55.13  Aligned_cols=116  Identities=16%  Similarity=0.226  Sum_probs=65.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEE--eCCCCH-------HhhhC-
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--LGQPQL-------ENALT-  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~--~~~~d~-------~eal~-  108 (279)
                      .+.+.|+||+|.+|..+|..|+.+|.  +|+++|+++  .+....++........+..+  .-+++.       .+.+. 
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            35899999999999999999999998  899999986  23333444332111122211  111111       12233 


Q ss_pred             -CCCEEEEccCCCCC---C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          109 -GMDLVIIPAGVPRK---P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 -~ADiVIitag~~~k---~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       +.|++|+.||....   +  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS  193 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGS  193 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence             45599999987421   1  1121   234555654    4444555554433 455566553

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.99  E-value=0.004  Score=55.88  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=45.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|||+ |.+|+.++..|...++ ..++.++|+++..  ...+.+..  ..+...   ++..+.++++|+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence            48999998 9999999999988774 3456778775421  22222211  112221   34567788999999986

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.99  E-value=0.0031  Score=56.93  Aligned_cols=108  Identities=21%  Similarity=0.292  Sum_probs=71.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--chhHHhhhhccc-----CCCeEEEEeCCCCH
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD-----TGAVVRGFLGQPQL  103 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~----~~~-----~ev~L~D~~~--~~g~~~DL~~~~-----~~~~v~~~~~~~d~  103 (279)
                      +..||.+.|| |..|..++.+|...    |+-     ++++++|.+-  ..+. .|+.+..     .......   ..++
T Consensus        24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~~~a~~~~~~~~---~~~L   98 (255)
T PF03949_consen   24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKKPFARKTNPEKD---WGSL   98 (255)
T ss_dssp             GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHHHHHBSSSTTT-----SSH
T ss_pred             HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhhhhhccCccccc---ccCH
Confidence            4569999999 99999999877654    764     7999999875  1111 2222210     0011110   1378


Q ss_pred             HhhhCCC--CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHH
Q 023671          104 ENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVP  166 (279)
Q Consensus       104 ~eal~~A--DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~  166 (279)
                      .|+++++  |++|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..  -.++
T Consensus        99 ~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p  151 (255)
T PF03949_consen   99 LEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP  151 (255)
T ss_dssp             HHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred             HHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence            9999999  9999887644   2           235789999999999999999999987  6654

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK06398 aldose dehydrogenase; Validated

Probab=96.98  E-value=0.0065  Score=54.11  Aligned_cols=112  Identities=15%  Similarity=0.191  Sum_probs=62.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-----HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~-----~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++....     ..|+.+...   +...  .....+.+...|++|
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~~---i~~~--~~~~~~~~~~id~li   77 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKEQ---VIKG--IDYVISKYGRIDILV   77 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHHH---HHHH--HHHHHHHcCCCCEEE
Confidence            346899999999999999999999998  9999998652111     112111100   0000  000112234689999


Q ss_pred             EccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          115 IPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       115 itag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +++|.....   ..+..   ..+..|+.    +.+.+.+.+.+. ..+.|+++|.
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS  131 (258)
T PRK06398         78 NNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIAS  131 (258)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence            999874321   11222   23455654    444455555443 3455666553

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.019  Score=53.61  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=65.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------  106 (279)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++++++  ......++....  .++..+. .-+|   .+++       
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~   82 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE   82 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  899999875  222223333211  1222111 1122   2122       


Q ss_pred             hCCCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|+++|.....   ..+..   ..+..|    +...+.+.+.+.+.. .+.|++++.
T Consensus        83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS  144 (334)
T PRK07109         83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS  144 (334)
T ss_pred             CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence            23689999999864211   11111   223333    445566666666543 355665543

>PRK12743 oxidoreductase; Provisional

Probab=96.97  E-value=0.044  Score=48.49  Aligned_cols=115  Identities=13%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhHHhhhhcccCCCeEEEEe-CCCCH---Hh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTGAVVRGFL-GQPQL---EN-------A  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~e-------a  106 (279)
                      +++|.|+||+|.+|..++..|+..|.  +|++.+... .  .....++....  ..+..+. ..++.   ++       .
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQR   77 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34899999999999999999999997  888876533 1  12222332211  1222211 11221   11       1


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHH----HHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~----~I~~~~p~a~viv~TN  159 (279)
                      +...|++|+++|.....   ..+.   ...+..|+.....+.+    .+.+....+.++++|.
T Consensus        78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS  140 (256)
T PRK12743         78 LGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS  140 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence            23579999999864321   1111   2334556554444444    4433333456666654

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0022  Score=56.82  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++++++
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~   43 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR   43 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence            46899999999999999999999998  899999865

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0047  Score=53.89  Aligned_cols=116  Identities=18%  Similarity=0.200  Sum_probs=64.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhh---CCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL---TGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal---~~ADiVIi  115 (279)
                      +.+++.|+||+|.+|.+++..|+..|+  +|++++++...  ..++........+.. .....++.+.+   ...|+||+
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~   83 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVN   83 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEE
Confidence            346899999999999999999999997  89999986521  111211100001111 11011122223   35799999


Q ss_pred             ccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh----CCCceEEEecC
Q 023671          116 PAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC----CPNATVNLISN  159 (279)
Q Consensus       116 tag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~----~p~a~viv~TN  159 (279)
                      ++|.....   ..+.   ...+..|+.-...+++.+.+.    +..+.++++|.
T Consensus        84 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         84 CAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            99864321   1111   223455666555555555443    22355666553

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0065  Score=52.71  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999999997  999999865

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.97  E-value=0.0061  Score=54.05  Aligned_cols=99  Identities=22%  Similarity=0.306  Sum_probs=63.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCc--EEEEEeCCC----chh-----HHhhhhcccCCCeEEEEeCCCCHHhhh
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS--VLHLYDVVN----TPG-----VTADISHMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~--ev~L~D~~~----~~g-----~~~DL~~~~~~~~v~~~~~~~d~~eal  107 (279)
                      .+.+||.|+|| |..|..++..|...|. +  +|.++|++.    .+.     ...++.+......   .  ..++.+++
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEAL   95 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHH
Confidence            44569999999 9999999999988875 4  899999983    111     1122222110011   1  12566889


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      +++|++|.+.+    +|+-       +    .+..+.+   +++.+++..+||..
T Consensus        96 ~~~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~  132 (226)
T cd05311          96 KGADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVP  132 (226)
T ss_pred             hcCCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCC
Confidence            99999999865    2331       1    2333333   36778778899974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.96  E-value=0.0013  Score=59.22  Aligned_cols=125  Identities=18%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEeCCCc--hhHHhhhhcc--c--CCCeEEEEeCCCCHH
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVNT--PGVTADISHM--D--TGAVVRGFLGQPQLE  104 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~---------~~ev~L~D~~~~--~g~~~DL~~~--~--~~~~v~~~~~~~d~~  104 (279)
                      +..||.+.|| |..|..++..|...+.         -.+++++|..-+  .+. .|+...  .  .+.+-.  ....++.
T Consensus        24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l~~~~~~~~~~~~~~--~~~~~L~   99 (254)
T cd00762          24 SEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPE--RESGDLE   99 (254)
T ss_pred             hhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC-CccCHHHHHHHHHcCcc--cccCCHH
Confidence            3469999999 9999999987765432         138999998641  111 111110  0  000101  1124789


Q ss_pred             hhhC--CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHHhCCCCC
Q 023671          105 NALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYDP  180 (279)
Q Consensus       105 eal~--~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~~~~~~~  180 (279)
                      ++++  ++|++|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..  -.++   +-.++.+.  -
T Consensus       100 eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t~--G  160 (254)
T cd00762         100 DAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTATE--G  160 (254)
T ss_pred             HHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhcC--C
Confidence            9999  999998876544   2           235688999999999999999999986  4443   22333221  2


Q ss_pred             CCeeeec
Q 023671          181 KKLLGVT  187 (279)
Q Consensus       181 ~kViG~t  187 (279)
                      +.+|++.
T Consensus       161 ~ai~AtG  167 (254)
T cd00762         161 RAIFASG  167 (254)
T ss_pred             CEEEEEC
Confidence            4677774

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.96  E-value=0.0096  Score=52.66  Aligned_cols=115  Identities=13%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhh-------hCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~ea-------l~~AD  111 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.+.+.. ....++.+... ..+.. .....++.++       +...|
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVD   81 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            346899999999999999999999997  8888765431 11122221110 00110 0001111122       23679


Q ss_pred             EEEEccCCCCCC---CCchh---hHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          112 LVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       112 iVIitag~~~k~---g~~r~---d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ++|+++|.....   ..+..   ..+..|+.-    .+.+.+.+.+.. .+.|+++|.
T Consensus        82 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS  138 (255)
T PRK06463         82 VLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIAS  138 (255)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            999999874321   11222   234455544    566677666433 455665553

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.012  Score=51.80  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=32.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+.++|.|+||+|.+|++++..|+..|.  +|++.++++
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3456899999999999999999999987  899999875

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.0098  Score=52.49  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=64.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~  108 (279)
                      +++.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++....  ..+..+. ..+|   ..+.       +.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999998  899999875  222222333211  1222211 1112   1111       24


Q ss_pred             CCCEEEEccCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          109 GMDLVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       109 ~ADiVIitag~~~k-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..|++|+++|.... +  ..+.   ...+..|+.    +.+.+.+.+.+..+.+.++++|
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is  137 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV  137 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence            67999999985321 1  2222   223455544    4444444444434456677665

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.94  E-value=0.0058  Score=54.34  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+|.+|..++..|+.+|.  +|++.|+++
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            45899999999999999999999998  999999876

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.93  E-value=0.019  Score=51.12  Aligned_cols=116  Identities=16%  Similarity=0.265  Sum_probs=64.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l  107 (279)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.++  ......++....  .++..+. ..++.   +++       +
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   85 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999997  899998765  222222332211  1222211 11121   111       2


Q ss_pred             CCCCEEEEccCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCCC
Q 023671          108 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       108 ~~ADiVIitag~~~k-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ...|++|+++|.... +  ..+.   ...+..|+.    +.+.+.+.+.+ ...+.|++++...
T Consensus        86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~  148 (265)
T PRK07097         86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM  148 (265)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence            457999999986421 1  1111   223344544    34445555544 3356666666543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.93  E-value=0.0053  Score=56.63  Aligned_cols=78  Identities=17%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             hhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhh
Q 023671           29 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        29 ~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal  107 (279)
                      ..++..........||.|+|+ |.+|..++..|...|.  +|.++|++.. ...+.++   .  ...  . ...++.+.+
T Consensus       140 ~~a~~~~~~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~--~-~~~~l~~~l  208 (296)
T PRK08306        140 MMAIEHTPITIHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSP--F-HLSELAEEV  208 (296)
T ss_pred             HHHHHhCCCCCCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Cee--e-cHHHHHHHh
Confidence            333333333445679999998 9999999999998886  9999999752 2222211   1  111  1 112456788


Q ss_pred             CCCCEEEEcc
Q 023671          108 TGMDLVIIPA  117 (279)
Q Consensus       108 ~~ADiVIita  117 (279)
                      +++|+||.|.
T Consensus       209 ~~aDiVI~t~  218 (296)
T PRK08306        209 GKIDIIFNTI  218 (296)
T ss_pred             CCCCEEEECC
Confidence            9999999986

>PLN02503 fatty acyl-CoA reductase 2

Probab=96.93  E-value=0.011  Score=59.83  Aligned_cols=119  Identities=15%  Similarity=0.066  Sum_probs=72.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc----hhHH-hhhhcc---------c-------CCCeEEE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT----PGVT-ADISHM---------D-------TGAVVRG   96 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~----~g~~-~DL~~~---------~-------~~~~v~~   96 (279)
                      -+.++|.|+||+||+|..++..|+... -+.+|+++.+...    .... .++.+.         .       ...++..
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            356899999999999999999888754 3568888877541    1111 111110         0       0123333


Q ss_pred             EeCC-C---------CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671           97 FLGQ-P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (279)
Q Consensus        97 ~~~~-~---------d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T  158 (279)
                      +.+. .         +++...++.|+||++|+... ...+....+..|+...+++++.+.+.. .+.++.+.|
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vST  268 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVST  268 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccC
Confidence            2211 1         22233467999999997643 233445667889999999999887653 233443333

>PRK07574 formate dehydrogenase; Provisional

Probab=96.93  E-value=0.0072  Score=57.85  Aligned_cols=95  Identities=17%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..|..-|.  +|..+|+......   .....   .+..   ..++++.++.||+|+++..
T Consensus       190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~---~~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTY---HVSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Ccee---cCCHHHHhhcCCEEEEcCC
Confidence            44579999999 9999999999988887  9999998652111   11110   1111   1257888999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..           ..+-.++.  .+.+....|.+++|+++
T Consensus       258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             CC-----------HHHHHHhC--HHHHhcCCCCcEEEECC
Confidence            22           11111121  23334445788999875

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.92  E-value=0.012  Score=52.22  Aligned_cols=117  Identities=16%  Similarity=0.172  Sum_probs=66.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCCHH---hh-----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQLE---NA-----  106 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d~~---ea-----  106 (279)
                      .+.+++.|+||+|.+|..++..|+..|.  .+++...++.   .....++.+..  .++..+. ..+|.+   +.     
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~   80 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAV   80 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999997  7888766441   22222332211  1222111 112221   11     


Q ss_pred             --hCCCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          107 --LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 --l~~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                        +...|++|+.+|.....   ..+..   ..+..|+.    +.+.+.+.+.+....+.++++|.
T Consensus        81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence              23579999999864321   11122   23455643    34556666666555566666553

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.92  E-value=0.0087  Score=51.96  Aligned_cols=116  Identities=21%  Similarity=0.297  Sum_probs=64.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENA------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------  106 (279)
                      +.++|.|+|++|++|+.++..|+..|.  +|++...+..   .....++....  ..+..+. .-.+   +.++      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8877766542   11122222111  1222111 1112   1111      


Q ss_pred             -hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCceEEEecC
Q 023671          107 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  159 (279)
Q Consensus       107 -l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~a~viv~TN  159 (279)
                       +.+.|.||+++|.....   ..+.   ...+..|+.....+.+.+.+..   +...++++|.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence             23689999999864321   1111   1234566666666666665442   2234555553

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.027  Score=49.96  Aligned_cols=117  Identities=16%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCHH----------hh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~~----------ea  106 (279)
                      +.+.+.|+||+|.+|..++..|+..|.  +|++.++++  ......++.......++..+. ..+|.+          +.
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999998  899999876  222223333221111222211 112221          11


Q ss_pred             hCCCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|++||.....   ..+..   ..+..|    +...+.+.+.+++.. .+.|+++|.
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  146 (265)
T PRK07062         85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS  146 (265)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence            34679999999864321   11111   122333    345666666666543 355666553

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.014  Score=51.59  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=59.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      +.+++.|+||+|.+|..++..|+.+|.  ++++.+.++. .....++....  .++..+. ..++   +.+.+       
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKF   81 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            346899999999999999999999997  8899988762 22223332221  1222211 1112   22223       


Q ss_pred             CCCCEEEEccCCCCCCCC--c---hhhHHHhhHHHHHHHHHHHH
Q 023671          108 TGMDLVIIPAGVPRKPGM--T---RDDLFNINAGIVRTLCEGIA  146 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~--~---r~d~~~~N~~i~~~i~~~I~  146 (279)
                      ...|+||+++|.......  .   -.+.+..|+.....+.+...
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~  125 (258)
T PRK08628         82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCL  125 (258)
T ss_pred             CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence            257999999986432221  1   12345566655445544443

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.91  E-value=0.012  Score=52.27  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999998  999999865

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.91  E-value=0.012  Score=51.98  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=64.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hh-------hh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~e-------al  107 (279)
                      .++|.|+||+|.+|.+++..|...|.  ++++.|.+.  ......++.+..  .++..+. .-++.   .+       .+
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   86 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL   86 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999997  899998865  222223333221  1121111 11121   11       22


Q ss_pred             CCCCEEEEccCCCCCC--CCchh---hHHHhhHHHHHHHHHHHHH---hCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP--GMTRD---DLFNINAGIVRTLCEGIAK---CCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~--g~~r~---d~~~~N~~i~~~i~~~I~~---~~p~a~viv~TN  159 (279)
                      ...|++|+++|.....  ..+..   +.+..|+.-...+.+.+..   ....+.++++|.
T Consensus        87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  146 (255)
T PRK06113         87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS  146 (255)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            4579999999863211  22222   2355666554444444432   122345555553

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.90  E-value=0.0043  Score=58.14  Aligned_cols=64  Identities=25%  Similarity=0.367  Sum_probs=45.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..+||+|||. |.+|+.+|..|+. .|.  +|+.+|.......    ..     .+.   ..+++++++++||+|+++..
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~~---~~~~l~ell~~aDvIvl~lP  209 (332)
T PRK08605        145 KDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YVD---YKDTIEEAVEGADIVTLHMP  209 (332)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hcc---ccCCHHHHHHhCCEEEEeCC
Confidence            4569999999 9999999998843 355  9999997642111    10     011   12367889999999999874

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.89  E-value=0.0089  Score=56.02  Aligned_cols=67  Identities=19%  Similarity=0.167  Sum_probs=47.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+.+||+|||. |.+|.+++..|...|+  +|+..+.+....  .+......   +..    .+..+++++||+|+++.
T Consensus        15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s--~~~A~~~G---~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKS--WKKAEADG---FEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhh--HHHHHHCC---Cee----CCHHHHHhcCCEEEEcC
Confidence            34569999999 9999999999999998  888887654211  11111111   111    14678899999999986

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.01  Score=53.11  Aligned_cols=34  Identities=26%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++.|+||+|.+|..++..|+..|.  +|++.+++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999997  999999865

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=96.88  E-value=0.0032  Score=56.06  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=59.0

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h--HH-hhhhccc--------CCCeEEEEeCC----------CC
Q 023671           46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VT-ADISHMD--------TGAVVRGFLGQ----------PQ  102 (279)
Q Consensus        46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g--~~-~DL~~~~--------~~~~v~~~~~~----------~d  102 (279)
                      |+||+||+|+++...|+..+...+|+++-+....  +  .. ..+.+..        ...+++.+.+.          .+
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            6899999999999988877652288888776411  1  11 1111110        13455554321          11


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +.+-.+.+|+||++|+... ...+..++...|+...+++++...+.....++.+.|
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iST  135 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYIST  135 (249)
T ss_dssp             HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEE
T ss_pred             hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCcceEEecc
Confidence            2223378999999987542 222345577889999999999998544344444434

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK09242 tropinone reductase; Provisional

Probab=96.88  E-value=0.025  Score=50.00  Aligned_cols=116  Identities=17%  Similarity=0.193  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC----------HHhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d----------~~eal  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++++++.  ......++.......++..+.. -.+          ..+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  999999876  2222233332211112222111 111          11224


Q ss_pred             CCCCEEEEccCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k-~--g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|+||+++|.... +  ..+..   ..+..|+.    +++.+.+.+++. +.+.++++|.
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS  147 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS  147 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence            568999999986321 1  11222   23445555    444444445443 3355555553

>PRK12742 oxidoreductase; Provisional

Probab=96.88  E-value=0.016  Score=50.27  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      .++|.|+||+|.+|..++..|+..|.  ++++.+..
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~   39 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG   39 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence            45899999999999999999999987  88887653

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.88  E-value=0.0077  Score=51.20  Aligned_cols=94  Identities=28%  Similarity=0.358  Sum_probs=59.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|+|. |.+|+.+|..+..-|.  +|+.+|+......  ...+..    +.    ..++++.++.||+|+++..
T Consensus        34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~----~~----~~~l~ell~~aDiv~~~~p  100 (178)
T PF02826_consen   34 LRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG----VE----YVSLDELLAQADIVSLHLP  100 (178)
T ss_dssp             STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT----EE----ESSHHHHHHH-SEEEE-SS
T ss_pred             cCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc----ce----eeehhhhcchhhhhhhhhc
Confidence            44679999998 9999999999998888  9999998762211  111111    11    1257888999999999874


Q ss_pred             CC-CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          119 VP-RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       119 ~~-~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .. ...++       -|.       +.+.+..|++++|+++-
T Consensus       101 lt~~T~~l-------i~~-------~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen  101 LTPETRGL-------INA-------EFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             SSTTTTTS-------BSH-------HHHHTSTTTEEEEESSS
T ss_pred             ccccccee-------eee-------eeeeccccceEEEeccc
Confidence            32 11121       111       22334447889999864

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.013  Score=52.13  Aligned_cols=115  Identities=22%  Similarity=0.245  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCHH---hh------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE---NA------L  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~~---ea------l  107 (279)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++++++.  .....++.+   ..++..+. .-.|..   +.      +
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~   78 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREM   78 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhc
Confidence            345899999999999999999999997  8999998751  112222211   11222211 111211   11      2


Q ss_pred             CCCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      ...|++|+++|.....   ..+   -.+.+..|+.....+.+.+.++   .+.+.+++++.
T Consensus        79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS  139 (263)
T PRK09072         79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS  139 (263)
T ss_pred             CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            4679999999864321   111   1234556665555555544432   22355665554

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0094  Score=52.47  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|.|+||+|.+|.+++..|...|.  +|+++|++.
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~   42 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL   42 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35799999999999999999999997  999999875

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.87  E-value=0.017  Score=53.39  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=69.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH----hhhhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT----ADISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~----~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      .|||+|+|+ |.||+.++..|...|.  +|.++++..  .....    ..+........+.... . + .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~-~-~-~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA-E-T-ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC-C-C-cccccccCEEE
Confidence            469999999 9999999999998887  899999853  11110    0011100001111111 1 1 12356889999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      +|.-    .-        .    ..+.++.+... .+++.++.+-|=++....+     ++  -++.+++++-
T Consensus        76 v~vK----~~--------~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l-----~~--~~~~~~v~~g  125 (305)
T PRK05708         76 LACK----AY--------D----AEPAVASLAHRLAPGAELLLLQNGLGSQDAV-----AA--RVPHARCIFA  125 (305)
T ss_pred             EECC----HH--------h----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH-----HH--hCCCCcEEEE
Confidence            9862    10        1    23444555554 3788888889998876533     32  2566777765

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.87  E-value=0.012  Score=47.22  Aligned_cols=73  Identities=25%  Similarity=0.308  Sum_probs=44.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|+|++|.+|+.++..+...+-..=+..+|.+.......|+.+...  ...+..   ++|+++.+..+|+||-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEcC
Confidence            5999999999999999999988543323456666551112233332211  122222   357888899999988763

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.86  E-value=0.017  Score=50.17  Aligned_cols=107  Identities=19%  Similarity=0.175  Sum_probs=61.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC----HHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d----~~eal~~ADiVI  114 (279)
                      +.+++.|+||+|.+|.+++..|++.|.  +|++.|+++...    ..     ..+..... -++    ..+.+...|++|
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv   72 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILC   72 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEE
Confidence            345899999999999999999999997  899999865211    00     11111110 001    122356789999


Q ss_pred             EccCCCCC--C--CCch---hhHHHhhHHHHHHHH----HHHHHhCCCceEEEec
Q 023671          115 IPAGVPRK--P--GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~k--~--g~~r---~d~~~~N~~i~~~i~----~~I~~~~p~a~viv~T  158 (279)
                      +++|....  +  ..+.   ...+..|+.....+.    +.+.+. +.+.+++++
T Consensus        73 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~s  126 (235)
T PRK06550         73 NTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLER-KSGIIINMC  126 (235)
T ss_pred             ECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            99986421  1  1111   234555655444444    444333 335555554

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.034  Score=49.69  Aligned_cols=116  Identities=14%  Similarity=0.142  Sum_probs=67.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------C
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------T  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------~  108 (279)
                      .+.+.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++.... ..++..+. ..+|   .++.+      .
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            45789999999999999999999998  899999875  222223332211 11222211 1112   22222      3


Q ss_pred             CCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          109 GMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       109 ~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      ..|++|+++|.+...   ..+..   ..+..|    +.+.+.+.+.+++.. .+.||++|..
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~  145 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV  145 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence            589999999865321   12222   223344    446777777776543 4566666543

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.21  Score=43.78  Aligned_cols=116  Identities=11%  Similarity=0.060  Sum_probs=65.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HH-------hh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~-------ea  106 (279)
                      +.+.+.|+||++-+|..++..|++.|.  +|+++++++  .+....++....  ..+..+. ...|   +.       +.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ   79 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999876  222222232211  1111111 1111   11       12


Q ss_pred             hC-CCCEEEEccCCCCCC----CCchhh---HHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LT-GMDLVIIPAGVPRKP----GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~-~ADiVIitag~~~k~----g~~r~d---~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +. ..|++|.++|....+    ..+..+   .+..|    +.+.+...+.+.+....+.|+++|.
T Consensus        80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            23 689999999743221    112222   22223    3344555666665544566666664

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.85  E-value=0.039  Score=49.39  Aligned_cols=35  Identities=20%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999998  899999875

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.84  E-value=0.0057  Score=56.26  Aligned_cols=64  Identities=16%  Similarity=0.291  Sum_probs=46.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||++||. |.+|..++..|...|+  ++.++|+++.   ..++....    ...   ..+..++.++||+||++..
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            48999998 9999999999999998  8999998652   12232211    111   1245677899999999863

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.83  E-value=0.056  Score=48.40  Aligned_cols=129  Identities=16%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCC----------HHhhhCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ----------LENALTG  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d----------~~eal~~  109 (279)
                      +-+.|+|||+-+|..+|..|...|.  .|+|..++.  ++..+.++.+..  ........ +|          +.+.+..
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~--~~~~~~DV-tD~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGA--ALALALDV-TDRAAVEAAIEALPEEFGR   81 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCc--eEEEeecc-CCHHHHHHHHHHHHHhhCc
Confidence            4578999999999999999999999  999999986  455666666411  11111111 12          2344678


Q ss_pred             CCEEEEccCCCCCCCC---c---hhhHHHhhHHHHHH----HHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671          110 MDLVIIPAGVPRKPGM---T---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (279)
Q Consensus       110 ADiVIitag~~~k~g~---~---r~d~~~~N~~i~~~----i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~  179 (279)
                      .|++|..||...-...   +   -..++..|++-+..    +.+.+.+. ..+.||+++.=....            -||
T Consensus        82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG~~------------~y~  148 (246)
T COG4221          82 IDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAGRY------------PYP  148 (246)
T ss_pred             ccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEeccccccc------------cCC
Confidence            9999999997543211   1   23456778765544    45555543 356888876443322            366


Q ss_pred             CCCeeeecc
Q 023671          180 PKKLLGVTM  188 (279)
Q Consensus       180 ~~kViG~t~  188 (279)
                      -..|++-|.
T Consensus       149 ~~~vY~ATK  157 (246)
T COG4221         149 GGAVYGATK  157 (246)
T ss_pred             CCccchhhH
Confidence            677877653

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.0085  Score=53.09  Aligned_cols=113  Identities=15%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .+++.|+||+|++|.+++..|...|.  ++++.+...   .......+.+..  .++..+. ..+|   +.+++      
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  888876543   111112222211  2222221 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCceEEEe
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLI  157 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~a~viv~  157 (279)
                       ...|+||+++|.....   ..+.   ...+..|+.-...+++.+.+..   ..+.++++
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~  144 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM  144 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence             3479999999864321   1121   2345667655555555444432   23455544

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.013  Score=54.63  Aligned_cols=114  Identities=18%  Similarity=0.082  Sum_probs=65.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------  106 (279)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++++++  +.....++....  ..+..+. .-+|   .++.       
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999998  899999876  222223333221  1222110 1112   1121       


Q ss_pred             hCCCCEEEEccCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +...|++|.+||.....   ..+   -.+.+..|+.    ..+...+.+.+.. .+.+|+++
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~is  142 (330)
T PRK06139         82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMI  142 (330)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence            24679999999864321   111   1223455543    3444555555433 45666654

>PLN03139 formate dehydrogenase; Provisional

Probab=96.82  E-value=0.0099  Score=56.91  Aligned_cols=95  Identities=22%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..++..|..-|.  +|..+|.........  .+.    .+..   ..++++.+++||+|+++..
T Consensus       197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~lP  264 (386)
T PLN03139        197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINTP  264 (386)
T ss_pred             CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeCC
Confidence            45679999998 9999999999987777  899999764111111  111    1111   1367888999999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..           ..+-.++.  .+.+....|++++|+++
T Consensus       265 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        265 LT-----------EKTRGMFN--KERIAKMKKGVLIVNNA  291 (386)
T ss_pred             CC-----------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence            21           11112221  23444445889998875

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=96.81  E-value=0.017  Score=50.32  Aligned_cols=71  Identities=20%  Similarity=0.280  Sum_probs=44.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC------HHhhhCCCCEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLVI  114 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d------~~eal~~ADiVI  114 (279)
                      |+|.|+||+|.+|..++..|+.++....+.+.+.+....    ..    ..++..+. ..++      +.+.+...|++|
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998876433677766654211    11    11121111 1111      123356899999


Q ss_pred             EccCCC
Q 023671          115 IPAGVP  120 (279)
Q Consensus       115 itag~~  120 (279)
                      +++|..
T Consensus        73 ~~aG~~   78 (235)
T PRK09009         73 NCVGML   78 (235)
T ss_pred             ECCccc
Confidence            999975

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.80  E-value=0.0068  Score=56.61  Aligned_cols=73  Identities=26%  Similarity=0.348  Sum_probs=48.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHH-hhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~-~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|+||+|.||+.+...|..+ ..+.++.++-..+..|+. .++.....  .+...  ..| ..++.++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~--~~~-~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPED--AAD-EFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCccc--ccc-ccccccCCEEEEeCc
Confidence            369999999999999999999884 456778888765544443 44443221  11100  113 245779999999986

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.79  E-value=0.0063  Score=57.74  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=47.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~-~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +||+|+||+|.||+.+...|. .+.. ..+++++...+..|....+...  ...++.   .++ .+++.+.|++++++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 5554 3788898876543443323221  112322   212 246899999999986

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.79  E-value=0.012  Score=60.65  Aligned_cols=91  Identities=19%  Similarity=0.278  Sum_probs=59.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      .||+|||+ |.+|..++..+...|+..+|..+|+++.. ..+.+..   ..  ..   ..+++.+++.++|+||++... 
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g---~~--~~---~~~~~~~~~~~aDvVilavp~-   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLG---VI--DR---GEEDLAEAVSGADVIVLAVPV-   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCC---CC--Cc---ccCCHHHHhcCCCEEEECCCH-
Confidence            58999998 99999999999988854589999987621 1122111   10  00   123566778999999998631 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  157 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~  157 (279)
                                     ..+.++++.+.++. ++.+++.+
T Consensus        74 ---------------~~~~~vl~~l~~~~~~~~ii~d~   96 (735)
T PRK14806         74 ---------------LAMEKVLADLKPLLSEHAIVTDV   96 (735)
T ss_pred             ---------------HHHHHHHHHHHHhcCCCcEEEEc
Confidence                           12455556666553 45554443

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.014  Score=51.56  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+|++|.+|..++..|++.|.  +|++.|+++
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~   42 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT   42 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            45899999999999999999999997  999999865

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.78  E-value=0.0037  Score=55.39  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=71.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------chh---HHhhhhccc-CCCe------EEEEeCCCCHH
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPG---VTADISHMD-TGAV------VRGFLGQPQLE  104 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~------~~g---~~~DL~~~~-~~~~------v~~~~~~~d~~  104 (279)
                      .-||+|+|. |.+|++-|..++..|+  +|.|||+.+      ++.   ...+|+... ...+      +..+++++++.
T Consensus         3 ~~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~   79 (313)
T KOG2305|consen    3 FGKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN   79 (313)
T ss_pred             ccceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence            348999996 9999999999999999  999999976      111   122333321 1111      11245577888


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHH
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIA  168 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~  168 (279)
                      |.+++|=.|=.|+              .+...+.+.+.+++.+.. |..  |..|..+..|....
T Consensus        80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~mpS~~  128 (313)
T KOG2305|consen   80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFMPSKF  128 (313)
T ss_pred             HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccChHHH
Confidence            8888884443343              344567788888888876 443  34566666666433

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.11  Score=45.99  Aligned_cols=35  Identities=29%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G-~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+| -+|..++..|+..|.  +|++.|.+.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            45899999987 599999999999997  899999865

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.77  E-value=0.012  Score=51.98  Aligned_cols=96  Identities=21%  Similarity=0.292  Sum_probs=64.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      +||+|||+ |.+|..+...+.... -+.-+.+||.+..  ++..+......+.      .+++.+.+.+.|++|.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~e--k~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEE--KAKELEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHH--HHHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            58999999 999999987776543 3567788888752  2222332221111      1356677799999999985  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                                    .+.+++++.++-+.+.|.+|+.+.--+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          3567888888888877877665543343

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.77  E-value=0.0082  Score=58.86  Aligned_cols=97  Identities=13%  Similarity=0.190  Sum_probs=58.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc-cCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~-~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      +|+|||. |.+|.++|..|+..|+  +|.++|+++.+  ..++... .....+.......++.+.++++|+|+++..   
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~---   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK---   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence            4899998 9999999999999998  99999987622  2222221 000112221111122234567999999862   


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671          122 KPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  159 (279)
Q Consensus       122 k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN  159 (279)
                       ++           +.+.++++.+..+ .++.++|-.+|
T Consensus        73 -~~-----------~~v~~Vi~~l~~~L~~g~iIID~gn   99 (467)
T TIGR00873        73 -AG-----------APVDAVINQLLPLLEKGDIIIDGGN   99 (467)
T ss_pred             -Cc-----------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence             11           2234444555554 36677777776

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.039  Score=49.27  Aligned_cols=111  Identities=19%  Similarity=0.173  Sum_probs=64.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCH----------HhhhC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL----------ENALT  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~----------~eal~  108 (279)
                      .++|.|+||+|.+|..++..|+.+|.  +|++.++++.  .....++...    ..... .-+|.          .+.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~-D~~~~~~~~~~~~~~~~~~~   77 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLV----VGGPL-DVTDPASFAAFLDAVEADLG   77 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccc----eEEEc-cCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999997  8999998752  1111222210    01000 01111          12235


Q ss_pred             CCCEEEEccCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.|++|+++|......   .+   -...+..|+.    +.+.+.+.+.+. +.+.|+++|.
T Consensus        78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS  137 (273)
T PRK07825         78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVAS  137 (273)
T ss_pred             CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcC
Confidence            7899999998753211   11   1234555654    445555555543 3456666654

>PRK08324 short chain dehydrogenase; Validated

Probab=96.76  E-value=0.013  Score=60.10  Aligned_cols=113  Identities=21%  Similarity=0.299  Sum_probs=63.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++...   ..+..+. ..+|   ..+++       
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999997  8999998762  2222222221   1121111 1112   12222       


Q ss_pred             CCCCEEEEccCCCCCC---CCchh---hHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .+.|+||+++|.....   ..+..   ..+..|+..    ++...+.+++....+.|++++
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            3689999999864321   11111   223445444    444455555443335555554

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.76  E-value=0.018  Score=48.92  Aligned_cols=33  Identities=39%  Similarity=0.587  Sum_probs=29.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ||.|+|+ |-+|+.++..|+..|. .++.|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899999 9999999999999885 5899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.061  Score=47.32  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.+.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            346899999999999999999999997  8888754

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0037  Score=54.80  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +|||.|+||+|.+|..++..|+.+|.  +|++++++.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            46899999999999999999999997  899999865

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0075  Score=52.66  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ||+.|+||+|.+|..++..|...|.  +|+++|+++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4899999999999999999999997  999999875

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.75  E-value=0.023  Score=49.78  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++. +++.
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~   39 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSR   39 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            35899999999999999999999987  77664 4443

>PLN02928 oxidoreductase family protein

Probab=96.74  E-value=0.0072  Score=57.03  Aligned_cols=104  Identities=23%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhh--hcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL--~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      ...++|+|||. |.+|+.+|..+..-|.  +|+.+|+.........+  ................++++.++.||+|+++
T Consensus       157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            34579999998 9999999999987787  99999975311111100  0000000000000123688999999999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....  + .        +-.++.  .+.+.+..|.+++|+++
T Consensus       234 lPlt--~-~--------T~~li~--~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        234 CTLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIA  262 (347)
T ss_pred             CCCC--h-H--------hhcccC--HHHHhcCCCCeEEEECC
Confidence            6422  1 1        111111  23344445889999986

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=96.74  E-value=0.014  Score=54.27  Aligned_cols=105  Identities=18%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhHHhhhhcccCCCeEEEEeC-CCC---HHhhh--CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-----~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal--~~  109 (279)
                      .+.|.|+||+|++|+|.+..|+..|+  +|+++|.-.     +-..+..+.+..  ..+.+..+ -.|   +++.+  ..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~~--~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGEG--KSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCCC--CceEEEEeccCCHHHHHHHHhhcC
Confidence            35899999999999999999999999  999999754     112223333321  22332211 012   22222  35


Q ss_pred             CCEEEEccCCCCC-CC-CchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          110 MDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       110 ADiVIitag~~~k-~g-~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                      -|-|++.|+...- +. +.+..+...|+--...+.+.+++++
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            7888988764321 11 2245566788888999999999987

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.73  E-value=0.0084  Score=56.99  Aligned_cols=72  Identities=18%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~-~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |+||+|+||+|.||..+...++.. .+ ..++.++......+...++...    ...... ..+ .+.++++|+||++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~-~~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFD-IDALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCC-hhHhcCCCEEEECCC
Confidence            469999999999999999755554 44 4568887664432333233321    111111 122 256789999999875

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.71  E-value=0.034  Score=48.67  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+.+
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            35899999999999999999999997  88876653

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.027  Score=48.71  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=62.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHh---hhC--CCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLEN---ALT--GMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~e---al~--~ADiVIi  115 (279)
                      +++.|+||+|.+|++++..|+..|.  +|+++|++....  .++..... ..+.. .+...++.+   .+.  ..|+||+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            4899999999999999999998887  899999875211  11221110 00111 111111222   122  4799999


Q ss_pred             ccCCCCC---C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCceEEEecC
Q 023671          116 PAGVPRK---P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  159 (279)
Q Consensus       116 tag~~~k---~--g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TN  159 (279)
                      ++|....   +  ..+.   ...+..|+.-...+.+.+.++-  ..+.+++++.
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS  130 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS  130 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence            9987521   1  1122   2345667665555555554421  2344555443

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.70  E-value=0.032  Score=48.57  Aligned_cols=34  Identities=18%  Similarity=0.110  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++|.|+|++|.+|++++..|...|.  .|++.|+++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            4889999999999999999999887  899999874

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.045  Score=48.36  Aligned_cols=34  Identities=21%  Similarity=0.108  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      .+++.|+||+|.+|..++..|+..|.  ++++++.+
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~   41 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYN   41 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecC
Confidence            35899999999999999999999887  76666643

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.016  Score=52.90  Aligned_cols=115  Identities=23%  Similarity=0.248  Sum_probs=64.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEE-eCCCCH---Hh-------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQL---EN-------A  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~-~~~~d~---~e-------a  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.++++  ......++...   ..+..+ ..-+|.   .+       .
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVER   82 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  899999875  22222233211   111110 111221   11       1


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TN  159 (279)
                      +...|+||+++|.....   ..+.   ...+..|+.....+++.+...  ...+.|+++|.
T Consensus        83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            24689999999964311   1111   223455655444444443322  12455666553

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.02  Score=51.41  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+.|+||+|.+|.+++..|+.+|.  +|++.+++.
T Consensus        11 ~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~   44 (274)
T PRK07775         11 RPALVAGASSGIGAATAIELAAAGF--PVALGARRV   44 (274)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999997  899988764

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.68  E-value=0.023  Score=52.11  Aligned_cols=121  Identities=18%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe----CCCCHH-------hhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLE-------NAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~----~~~d~~-------eal  107 (279)
                      .+.|.|+|||.-+|.++|+.++..|.  .++++....  ++-.+.++.......++....    ..++.+       .-+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            34688999999999999999999997  788887654  222324444432111122211    111222       235


Q ss_pred             CCCCEEEEccCCCCCCCC-c------hhhHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671          108 TGMDLVIIPAGVPRKPGM-T------RDDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~-~------r~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t  165 (279)
                      .+.|+.|..||..+ .+. +      ..+.+..|    +-..+...+.+++.+ ++.|++++...+.+.
T Consensus        90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~  156 (282)
T KOG1205|consen   90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP  156 (282)
T ss_pred             CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence            79999999999876 321 1      12234444    678899999999888 888888877776554

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.67  E-value=0.012  Score=53.28  Aligned_cols=69  Identities=17%  Similarity=0.307  Sum_probs=44.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|||+ |.+|..++..+...+ -..-+.++|.+..  .+.++.... .  ...+   +++++.+.++|+|++++.
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~--~a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLE--KAENLASKT-G--AKAC---LSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHH--HHHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcCC
Confidence            469999998 999999998887654 2223567887652  112222211 1  1222   356666699999999974

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.016  Score=50.59  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +..++.|+|++|.+|..++..|+.+|.  +|+++|.++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999987  899999876

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.028  Score=56.78  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=65.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-----  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-----  107 (279)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++++++  ......++....  .++..+. ...|   .++++     
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~  444 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILA  444 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999997  999999876  222222332211  1222211 1112   22222     


Q ss_pred             --CCCCEEEEccCCCCCCC---C-----chhhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671          108 --TGMDLVIIPAGVPRKPG---M-----TRDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g---~-----~r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T  158 (279)
                        ...|++|++||......   .     +-...+..|+..    ++.+.+.+++. ..+.|+++|
T Consensus       445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~is  508 (657)
T PRK07201        445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVS  508 (657)
T ss_pred             hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEEC
Confidence              26899999998642211   0     112334556554    44445545443 345566655

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.047  Score=47.62  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.++|.|+||+|.+|.+++..|+.+|.  +|+++++++
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            346899999999999999999999987  899999876

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.64  E-value=0.021  Score=50.09  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      +++|.|+||+|.+|+.++..|+..|.  +|++.+.
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            45899999999999999999999987  7777653

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.64  E-value=0.027  Score=49.26  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      .++|.|+||+|++|++++..|+.+|.  ++++...
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            46899999999999999999999997  7766554

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.63  E-value=0.014  Score=54.94  Aligned_cols=74  Identities=24%  Similarity=0.255  Sum_probs=44.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHhh--hhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTAD--ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~-L~D~~~~~g~~~D--L~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +||+|+||+|.+|..++..|...+.. +++ +++.++..++...  ..+......... . ..+.++..+++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999988876543 666 6676542232221  111111011111 1 1133444469999999863

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.62  E-value=0.0087  Score=52.07  Aligned_cols=35  Identities=29%  Similarity=0.490  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            358999998 9999999999999984 6999999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02712 arogenate dehydrogenase

Probab=96.62  E-value=0.017  Score=59.14  Aligned_cols=66  Identities=18%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC-CCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~-~ADiVIita  117 (279)
                      .+++||+|||. |.+|.+++..|...|.  +|+.+|.+.....+.++   .    +..   .+++.+.+. ++|+||++.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~---~~~~~el~~~~aDvVILav  433 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSY---FSDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeE---eCCHHHHHhcCCCEEEECC
Confidence            45679999998 9999999999998886  89999987521111111   1    111   135556565 599999986

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.62  E-value=0.017  Score=50.13  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++++++
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999998  999999876

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.61  E-value=0.023  Score=49.83  Aligned_cols=34  Identities=35%  Similarity=0.497  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .||+|+|+ |-+|+.++..|+..|. .++.++|.+.
T Consensus        29 ~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         29 AKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            48999999 9999999999999986 5899999884

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.60  E-value=0.015  Score=57.45  Aligned_cols=97  Identities=15%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc----cCCCeEEEEeCCCCHHhhhCC---CCE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTGAVVRGFLGQPQLENALTG---MDL  112 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~----~~~~~v~~~~~~~d~~eal~~---ADi  112 (279)
                      ..++|++||- |.+|+++|..|+..|+  +|.++|++..+  +.++.+.    .. ..+..   ..++.+..+.   +|+
T Consensus         5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga-~~~~~---a~s~~e~v~~l~~~dv   75 (493)
T PLN02350          5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGN-LPLYG---FKDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCC-ccccc---CCCHHHHHhcCCCCCE
Confidence            3458999998 9999999999999998  99999987522  2222221    11 11111   2345555554   999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCC
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  160 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNP  160 (279)
                      ||++...+               +.+++++..+... .|+.++|-.||-
T Consensus        76 Ii~~v~~~---------------~aV~~Vi~gl~~~l~~G~iiID~sT~  109 (493)
T PLN02350         76 VIILVKAG---------------APVDQTIKALSEYMEPGDCIIDGGNE  109 (493)
T ss_pred             EEEECCCc---------------HHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            99985321               2233333344443 366677766653

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.60  E-value=0.02  Score=55.34  Aligned_cols=91  Identities=19%  Similarity=0.141  Sum_probs=60.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+..+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+ ..+..+.     .  ...    +.+++++++|+||.+.
T Consensus       200 l~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~G-----~--~~~----~~~e~v~~aDVVI~at  265 (413)
T cd00401         200 IAGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAMEG-----Y--EVM----TMEEAVKEGDIFVTTT  265 (413)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhcC-----C--EEc----cHHHHHcCCCEEEECC
Confidence            45679999999 9999999999998887  89999998622 2222211     1  111    2357789999999987


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      |.+               .++..  ..+....|.+++++++.+
T Consensus       266 G~~---------------~~i~~--~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         266 GNK---------------DIITG--EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CCH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence            532               11211  113333478899888865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.59  E-value=0.15  Score=45.17  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      .+.+++.|+||++.+|..++..|+..|.  +|++.+.
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~   40 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN   40 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence            3456899999999999999999999997  8888754

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.59  E-value=0.028  Score=49.12  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=27.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD   74 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D   74 (279)
                      +.+.|+|++|.+|..++..|+..|.  ++++..
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~   34 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC   34 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence            4689999999999999999999997  777754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.59  E-value=0.011  Score=54.34  Aligned_cols=97  Identities=21%  Similarity=0.231  Sum_probs=61.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ....+|+|+|+ |.+|..++..|...|.  +|.++|+++..  ...+....    ..... ..++.+.++++|+||.+..
T Consensus       149 l~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~--~~~~~~~g----~~~~~-~~~l~~~l~~aDiVint~P  218 (287)
T TIGR02853       149 IHGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSAD--LARITEMG----LIPFP-LNKLEEKVAEIDIVINTIP  218 (287)
T ss_pred             CCCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Ceeec-HHHHHHHhccCCEEEECCC
Confidence            34569999999 9999999999998886  99999987521  11111111    11111 1246677899999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe-cCCCCc
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNS  163 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~-TNPvd~  163 (279)
                      ..         ++  +    .+   .+....|+++++.+ ++|-.+
T Consensus       219 ~~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       219 AL---------VL--T----AD---VLSKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             hH---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCC
Confidence            21         11  1    12   23333467888866 678653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.038  Score=48.28  Aligned_cols=34  Identities=29%  Similarity=0.312  Sum_probs=28.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+.|+||+|.+|++++..|+..|.  ++++.+.+.
T Consensus         3 ~~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~   36 (248)
T PRK06123          3 KVMIITGASRGIGAATALLAAERGY--AVCLNYLRN   36 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEecCCC
Confidence            3688999999999999999999887  788877543

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.55  E-value=0.01  Score=56.39  Aligned_cols=82  Identities=18%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             hccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCC
Q 023671           33 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMD  111 (279)
Q Consensus        33 ~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~AD  111 (279)
                      .+..+..++.||.|+|+ |.+|...+..+...|.  +|..+|++..+.  ..+.... ...+.. .....++.+.++++|
T Consensus       159 ~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aD  232 (370)
T TIGR00518       159 LGGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRAD  232 (370)
T ss_pred             ecCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCC
Confidence            34444556779999999 9999999999998886  899999875211  1111111 011111 111124567789999


Q ss_pred             EEEEccCCC
Q 023671          112 LVIIPAGVP  120 (279)
Q Consensus       112 iVIitag~~  120 (279)
                      +||.+++.+
T Consensus       233 vVI~a~~~~  241 (370)
T TIGR00518       233 LLIGAVLIP  241 (370)
T ss_pred             EEEEccccC
Confidence            999998664

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.54  E-value=0.02  Score=50.16  Aligned_cols=35  Identities=29%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+|.+|+.++..|+.+|+  +++++|.+.
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            45899999999999999999999998  999999865

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.53  E-value=0.0085  Score=54.57  Aligned_cols=70  Identities=24%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhC--CCCcEEE-EEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~--~~~~ev~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      ++++||+|||. |.+|..++..|...  ++  +|+ ++|.++.+  +.++.......  ..   .+++++.+.++|+|++
T Consensus         4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~g~~--~~---~~~~eell~~~D~Vvi   73 (271)
T PRK13302          4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGLRRP--PP---VVPLDQLATHADIVVE   73 (271)
T ss_pred             CCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhcCCC--cc---cCCHHHHhcCCCEEEE
Confidence            45679999998 99999999888763  34  654 77876521  22222111001  11   1356777889999999


Q ss_pred             ccC
Q 023671          116 PAG  118 (279)
Q Consensus       116 tag  118 (279)
                      +++
T Consensus        74 ~tp   76 (271)
T PRK13302         74 AAP   76 (271)
T ss_pred             CCC
Confidence            975

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.024  Score=51.06  Aligned_cols=110  Identities=19%  Similarity=0.240  Sum_probs=58.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh------hCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA------LTGM  110 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------l~~A  110 (279)
                      .+.|+|| |.+|..++..|. .|.  +|++.|+++.  .....++...  ..++..+. .-+|   .++.      +...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4556676 899999999885 676  9999998752  2222233221  11222111 1112   1112      2368


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  159 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN  159 (279)
                      |++|++||.... ..+-.+.+..|+.....+++.+.+. .+++.+++++.
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS  126 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS  126 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence            999999997522 2233455667765555554444433 12333444443

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.51  E-value=0.0079  Score=57.48  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=46.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc-CCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~-~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+++||+|+||+|.+|..+...|...+. .||.++..++..|+...-.+.. .......+. ..+ .+.++++|+||++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            4667999999999999999998888853 3888887654333221111100 000111011 112 23478999999976


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            4

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.49  E-value=0.025  Score=52.65  Aligned_cols=66  Identities=20%  Similarity=0.196  Sum_probs=44.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +.+||+|||+ |.+|.+++..|...|+  ++++.+....... ..+....    +..   . +..+++++||+|+++.
T Consensus         2 ~~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         2 KGKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             CcCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence            3469999998 9999999999999987  6766554331111 1111111    121   1 3567889999999986

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.016  Score=50.32  Aligned_cols=34  Identities=18%  Similarity=0.073  Sum_probs=31.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++.|+||+|.+|+.++..|+..|.  +|+++|++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999999997  999999876

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.49  E-value=0.0027  Score=60.32  Aligned_cols=71  Identities=25%  Similarity=0.322  Sum_probs=44.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEE--EeC--CCCHHhhhCCCCEEEEcc
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRG--FLG--QPQLENALTGMDLVIIPA  117 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~--~~~--~~d~~eal~~ADiVIita  117 (279)
                      |.|+|+ |.+|+.++..|++.+...+|++.|++..+  .....+ .   ..++..  ...  ..++.+.++++|+||.++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~---~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-L---GDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---T---TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-c---ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            789999 99999999999988866699999998622  222222 1   112222  111  112556789999999998


Q ss_pred             CC
Q 023671          118 GV  119 (279)
Q Consensus       118 g~  119 (279)
                      |.
T Consensus        76 gp   77 (386)
T PF03435_consen   76 GP   77 (386)
T ss_dssp             SG
T ss_pred             cc
Confidence            64

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.45  E-value=0.012  Score=58.44  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..++|+|+|. |.+|+.+|..|...|.  +|+.||.........++.       +..   .+++++.+++||+|+++..
T Consensus       137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~lP  202 (525)
T TIGR01327       137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------VEL---VDDLDELLARADFITVHTP  202 (525)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CEE---cCCHHHHHhhCCEEEEccC
Confidence            4569999998 9999999999988887  999999753221222111       111   1357888999999999864

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.037  Score=47.00  Aligned_cols=104  Identities=20%  Similarity=0.193  Sum_probs=58.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |++.|+||+|.+|..++..|..+ .  +|++.+++.. ....|+.+...   ++      ...+.+...|++|.++|...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~~---~~------~~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPAS---IR------ALFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChHH---HH------HHHHhcCCCCEEEECCCCCC
Confidence            47999999999999999999877 4  8999987541 11123332210   00      01122347899999998643


Q ss_pred             CC---CCchhh---HHHhhHHHHHHHHHHHHHh-CCCceEEEec
Q 023671          122 KP---GMTRDD---LFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (279)
Q Consensus       122 k~---g~~r~d---~~~~N~~i~~~i~~~I~~~-~p~a~viv~T  158 (279)
                      ..   ..+..+   .+..|+.....+.+...++ .+.+.++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            11   122222   2344554444444443332 1345555555

>PRK07985 oxidoreductase; Provisional

Probab=96.45  E-value=0.065  Score=48.84  Aligned_cols=118  Identities=18%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--h-hHHhhhhcccCCCeEEEEe-CCCCH----------H
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P-GVTADISHMDTGAVVRGFL-GQPQL----------E  104 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~-g~~~DL~~~~~~~~v~~~~-~~~d~----------~  104 (279)
                      .+.+++.|+||+|.+|.+++..|+..|.  +|++.+.+..  . ....++.... ...+..+. ..+|.          .
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~  123 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAH  123 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHH
Confidence            3446899999999999999999999998  8998876531  1 1111111111 11222111 11221          1


Q ss_pred             hhhCCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          105 NALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       105 eal~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      +.+...|++|+.+|....  +  ..+.   ...+..|+...-.+++.+.+.- ..+.||++|.
T Consensus       124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS  186 (294)
T PRK07985        124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS  186 (294)
T ss_pred             HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence            223467999999986321  1  1222   2345667655555555544331 3456666654

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.44  E-value=0.17  Score=45.58  Aligned_cols=68  Identities=25%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ++||+|+|++|.+|+.++..+...+-+.-+.++|.+.......  .    ...+..   .+|+++.++++|+||.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~----~~~i~~---~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--G----ALGVAI---TDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--C----CCCccc---cCCHHHhccCCCEEEECC
Confidence            4699999988999999998777654333344578765211111  1    111221   347777788999999765

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=96.44  E-value=0.037  Score=48.19  Aligned_cols=114  Identities=14%  Similarity=0.164  Sum_probs=62.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------hCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTG  109 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l~~  109 (279)
                      |.|+||+|.+|.+++..|+++|.  ++++++...   ......++.+..  .++..+. ..+|.   .++       +..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46999999999999999999997  888887643   122222333221  1222211 11121   111       235


Q ss_pred             CCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCceEEEecCCC
Q 023671          110 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV  161 (279)
Q Consensus       110 ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I----~~~~p~a~viv~TNPv  161 (279)
                      .|.+|.++|......   .+   -...+..|+.....+.+.+    .+..+.+.++++|.+.
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            689999998643221   12   2234566665544444432    2223456666666543

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.42  E-value=0.026  Score=54.51  Aligned_cols=124  Identities=23%  Similarity=0.307  Sum_probs=72.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g---~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +.++|.|+|+ |.+|..+|..|+..|+  +|.++|.+....   ...++...    .++.+.+. ...+...++|+||.+
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEEC
Confidence            3469999999 8899999999999998  999999975211   12223211    12222211 112446789999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKK  174 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~  174 (279)
                      +|.+.... .....-+.+++++.......... + ..+|-+|-..+  ..+.++.+++..
T Consensus        76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence            88642211 11111234566665554433322 2 34555655554  555666666654

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.41  E-value=0.057  Score=49.67  Aligned_cols=117  Identities=16%  Similarity=0.302  Sum_probs=75.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC----------HHh
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LEN  105 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d----------~~e  105 (279)
                      .+...|.|+||++-+|..+|+.+++++-  .++|.|+++  ....+..+.+..   +++.+. .-++          .++
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence            5566899999978899999999999997  999999998  233333333321   122111 1112          244


Q ss_pred             hhCCCCEEEEccCCC-CCCC--Cchhh---HHHhh----HHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          106 ALTGMDLVIIPAGVP-RKPG--MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       106 al~~ADiVIitag~~-~k~g--~~r~d---~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ...+.|++|..||+. .++-  .++.+   .++.|    ..+++.+.+.+.+. .++.|+.++.-.
T Consensus       111 e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~a  175 (300)
T KOG1201|consen  111 EVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASVA  175 (300)
T ss_pred             hcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhhh
Confidence            567999999999974 3332  22222   23334    46788999999875 467776665433

>PLN02494 adenosylhomocysteinase

Probab=96.41  E-value=0.023  Score=55.60  Aligned_cols=94  Identities=22%  Similarity=0.168  Sum_probs=62.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|+|. |.+|..++..+...|.  +|+.+|+++.+ ..+.+.  ..   .+      .+++++++.+|+||.+.
T Consensus       252 LaGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~~--G~---~v------v~leEal~~ADVVI~tT  317 (477)
T PLN02494        252 IAGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALME--GY---QV------LTLEDVVSEADIFVTTT  317 (477)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHhc--CC---ee------ccHHHHHhhCCEEEECC
Confidence            45679999999 9999999999988887  89999987621 222211  11   11      13567899999999876


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      |..               .++.  .+.+....|.+++++++-+-+.
T Consensus       318 Gt~---------------~vI~--~e~L~~MK~GAiLiNvGr~~~e  346 (477)
T PLN02494        318 GNK---------------DIIM--VDHMRKMKNNAIVCNIGHFDNE  346 (477)
T ss_pred             CCc---------------cchH--HHHHhcCCCCCEEEEcCCCCCc
Confidence            532               1110  2233344588999999876433

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.41  E-value=0.012  Score=55.11  Aligned_cols=71  Identities=21%  Similarity=0.421  Sum_probs=46.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|+||+|.+|..++..|...++ ..||..+-.++..++..++..    ..+.... . + ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d-~-~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED-L-T-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee-C-C-HHHHcCCCEEEECCC
Confidence            46999999999999999999988654 347777755443333333221    2233211 1 2 245689999999875

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.39  E-value=0.013  Score=58.28  Aligned_cols=92  Identities=25%  Similarity=0.320  Sum_probs=59.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..++|+|+|. |.+|+.+|..+...|.  +|+.||.........++       .+...    ++++.++.||+|+++...
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~lP~  204 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHTPL  204 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEccCC
Confidence            4569999999 9999999999988887  99999975421111111       11211    467889999999998643


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..   .++ .++  |    .   +.+....|++++|+++
T Consensus       205 t~---~t~-~li--~----~---~~l~~mk~ga~lIN~a  230 (526)
T PRK13581        205 TP---ETR-GLI--G----A---EELAKMKPGVRIINCA  230 (526)
T ss_pred             Ch---Hhh-cCc--C----H---HHHhcCCCCeEEEECC
Confidence            21   111 111  1    1   2333334788888875

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.36  E-value=0.015  Score=54.62  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=50.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-----h------------h--H----HhhhhcccCCCeEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----P------------G--V----TADISHMDTGAVVRGF   97 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-----~------------g--~----~~DL~~~~~~~~v~~~   97 (279)
                      ..||.|||+ |-+|++++..|+..|+ .+|.|+|.+..     .            +  +    +..+........++.+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            348999999 9999999999999985 69999998740     0            0  1    1122222223344443


Q ss_pred             eC---CCCHHhhhCCCCEEEEcc
Q 023671           98 LG---QPQLENALTGMDLVIIPA  117 (279)
Q Consensus        98 ~~---~~d~~eal~~ADiVIita  117 (279)
                      ..   ..++++.++++|+||.+.
T Consensus       102 ~~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        102 VTDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             eccCCHHHHHHHhcCCCEEEEcC
Confidence            21   123556789999999985

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.36  E-value=0.037  Score=50.74  Aligned_cols=80  Identities=26%  Similarity=0.376  Sum_probs=50.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-----  106 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-----  106 (279)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|...   .+..+.++...  ..++..+. .-.|   ..+.     
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~~~   85 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVATAV   85 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999997  899999754   12222333321  12222211 1112   1111     


Q ss_pred             -hCCCCEEEEccCCCCC
Q 023671          107 -LTGMDLVIIPAGVPRK  122 (279)
Q Consensus       107 -l~~ADiVIitag~~~k  122 (279)
                       +...|++|++||....
T Consensus        86 ~~g~iD~li~nAG~~~~  102 (306)
T PRK07792         86 GLGGLDIVVNNAGITRD  102 (306)
T ss_pred             HhCCCCEEEECCCCCCC
Confidence             2368999999997643

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.36  E-value=0.04  Score=44.82  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=29.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ||.|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899999 9999999999999996 6999999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.36  E-value=0.14  Score=45.64  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=28.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      .+.|+||+|.+|.+++..|+.+|.  +|++.+.+
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            688999999999999999999998  88887643

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.34  E-value=0.065  Score=46.47  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=27.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      .+.|+||+|.+|..++..|+..|.  ++++...
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r   32 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG   32 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            578999999999999999999997  8888876

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.33  E-value=0.016  Score=50.29  Aligned_cols=76  Identities=21%  Similarity=0.243  Sum_probs=51.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      .+.++|+|||-+.-||..++.+|++++-  .|.++|++..  ......+.|...  ..+.  .+.++.+.++.||+||.+
T Consensus        60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~--~~~~l~~~~~~ADIVIsA  133 (197)
T cd01079          60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTD--EEAMTLDCLSQSDVVITG  133 (197)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccc--hhhHHHHHhhhCCEEEEc
Confidence            4567999999999999999999998886  9999998651  111111222211  0000  011256778999999999


Q ss_pred             cCCC
Q 023671          117 AGVP  120 (279)
Q Consensus       117 ag~~  120 (279)
                      +|.+
T Consensus       134 vG~~  137 (197)
T cd01079         134 VPSP  137 (197)
T ss_pred             cCCC
Confidence            9866

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.33  E-value=0.018  Score=52.63  Aligned_cols=61  Identities=18%  Similarity=0.293  Sum_probs=44.2

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||. |.+|..++..|...|+  +|.++|+++..  ..++....    ...   +++..++++++|+||++..
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~vp   61 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITMLP   61 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            5898 9999999999999998  99999987521  22222211    111   2356788999999999864

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.32  E-value=0.028  Score=49.94  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999998  899999875

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.31  E-value=0.037  Score=48.22  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=46.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +.+||.|||+ |.||...+..|...|.  +|.+++.+... ...++.+..   .+........ ++.+.++|+||.+.+
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~   79 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN   79 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence            4569999999 9999999999998885  99999754321 222232221   1222111112 456899999888753

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.31  E-value=0.044  Score=52.94  Aligned_cols=118  Identities=20%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhh-------hCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~ea-------l~~AD  111 (279)
                      +.+++.|+|++|.+|..++..|+..|.  +|+++|.........++........+.. .....+..+.       ....|
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            346899999999999999999999997  8999998542211122211110011111 0000111111       22589


Q ss_pred             EEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          112 LVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       112 iVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      +||+++|.....   ..+   -...+..|+.-...+.+.+...   .+.+.|+++|.
T Consensus       287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            999999875321   112   1234566777666666666542   24466666653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.28  E-value=0.023  Score=47.81  Aligned_cols=57  Identities=26%  Similarity=0.442  Sum_probs=41.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+.++|+|||.+..||..++.+|..++-  .+.+.+.+                       +.++++.++.||+||.++|
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G   88 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG   88 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence            4466999999988999999999998875  55555431                       2356788999999999998


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      .|
T Consensus        89 ~~   90 (160)
T PF02882_consen   89 KP   90 (160)
T ss_dssp             ST
T ss_pred             cc
Confidence            65

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.28  E-value=0.013  Score=54.99  Aligned_cols=72  Identities=21%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +|+||+|+||+|.+|.-+...|..+++ ..+|..+-..+..|+...+..    ..+... .. + .++++++|+||++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~-~~-~-~~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR-EV-D-SFDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe-eC-C-hHHhcCCCEEEEcCC
Confidence            347999999999999999999986542 457777755443343333222    112221 11 2 234789999999864

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.27  E-value=0.021  Score=54.58  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.||+.++..+..-|.  +|..+|.....   .  ...     ..    ..++++.++.||+|++...
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~---~--~~~-----~~----~~~L~ell~~sDiI~lh~P  176 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD---R--GDE-----GD----FRSLDELVQEADILTFHTP  176 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--ccc-----cc----cCCHHHHHhhCCEEEEeCC
Confidence            45679999999 9999999999998888  99999963211   0  000     01    1257788899999998754

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.26  E-value=0.016  Score=55.95  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=65.2

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      ..+..+|+|+|+ |.+|..++..|...|. .+|.++|++..  ...+.++..     ..  +. ..++.+++.++|+||.
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~-----~~--i~-~~~l~~~l~~aDvVi~  246 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG-----EA--VK-FEDLEEYLAEADIVIS  246 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC-----eE--ee-HHHHHHHHhhCCEEEE
Confidence            345679999999 9999999999988773 48999998752  222222211     11  11 1356678899999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  165 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t  165 (279)
                      +.+.+..- .            -.+.++...... ...+++-+++|-|+=.
T Consensus       247 aT~s~~~i-i------------~~e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       247 STGAPHPI-V------------SKEDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             CCCCCCce-E------------cHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            87654211 0            112222222211 2357888899987753

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.26  E-value=0.033  Score=52.39  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            348999999 9999999999999985 6999999874

>PRK05599 hypothetical protein; Provisional

Probab=96.26  E-value=0.32  Score=42.85  Aligned_cols=116  Identities=13%  Similarity=0.213  Sum_probs=64.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---H-------HhhhC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENALT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~-------~eal~  108 (279)
                      |.+.|+||++-+|..++..|. +|.  +|++.++++  ++..+.++..... ..+..+. .-.|   .       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            358899999999999999988 465  899999876  3333344433211 1122111 0111   1       12234


Q ss_pred             CCCEEEEccCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          109 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ..|++|+++|......   .+.   .+....|    +.+.+.+.+.+.+...++.|+++|.-.
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~  139 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA  139 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            6899999998743211   111   1222233    334445556666544456777776543

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.16  Score=44.93  Aligned_cols=115  Identities=18%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---H---hhhCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E---NALTGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~---eal~~AD  111 (279)
                      .+++.|+|++|.+|..++..|+..|.  +|++.|+++  ......++.... ..++..+. .-++.   .   +.+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            46899999999999999999999987  999999875  222222233211 11122111 11121   1   1245799


Q ss_pred             EEEEccCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          112 LVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       112 iVIitag~~~k-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ++|+++|.... +  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.++++|.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss  140 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG  140 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence            99999986421 1  1121   223445544    4555555555433 345555543

>PRK08017 oxidoreductase; Provisional

Probab=96.24  E-value=0.019  Score=50.46  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++|.|+||+|.+|.+++..|+++|.  +|++++++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999999987  899998865

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.23  E-value=0.02  Score=48.57  Aligned_cols=58  Identities=28%  Similarity=0.446  Sum_probs=45.6

Q ss_pred             CCCCCcEEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           37 GGAAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~-VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +....+||.|||+ |. +|..++..|...+.  +|.+.+++.                       .++++.+++||+||.
T Consensus        40 ~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIs   93 (168)
T cd01080          40 IDLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIV   93 (168)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEE
Confidence            3456679999999 86 58889999988886  788887531                       246678999999999


Q ss_pred             ccCCC
Q 023671          116 PAGVP  120 (279)
Q Consensus       116 tag~~  120 (279)
                      +.+.+
T Consensus        94 at~~~   98 (168)
T cd01080          94 AVGKP   98 (168)
T ss_pred             cCCCC
Confidence            98765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.23  E-value=0.014  Score=55.05  Aligned_cols=71  Identities=23%  Similarity=0.383  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|+||+|.+|..+...|..+++ ..++..+...+..|+..+...    ..+...  ..+ .+++.++|+||++++
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~p   78 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSAG   78 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECCC
Confidence            46999999999999999988887553 457777755443333332211    122221  113 356799999999876

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.23  E-value=0.066  Score=46.60  Aligned_cols=35  Identities=20%  Similarity=0.115  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++++.|+||+|.+|..++..|+.+|.  +|++.|+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            34789999999999999999999998  999999875

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.22  E-value=0.018  Score=53.77  Aligned_cols=71  Identities=15%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..+++|||+ |..|...+..+.....+.+|.++|++.  ++..+.++.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence            458999998 999998776665544578999999986  33333444322  223333   246789999999999875

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.22  E-value=0.025  Score=52.83  Aligned_cols=93  Identities=20%  Similarity=0.143  Sum_probs=57.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|||. |.+|..++..+. .-|.  +|+.+|.........++       .++.    .++++.++.||+|++..
T Consensus       143 L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~~----~~l~ell~~sDvv~lh~  208 (323)
T PRK15409        143 VHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NARY----CDLDTLLQESDFVCIIL  208 (323)
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcEe----cCHHHHHHhCCEEEEeC
Confidence            34679999998 999999998886 5566  88888865311111111       1111    25788899999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ...  + +++ .++  |    ++   .+..-.|++++|+++
T Consensus       209 plt--~-~T~-~li--~----~~---~l~~mk~ga~lIN~a  236 (323)
T PRK15409        209 PLT--D-ETH-HLF--G----AE---QFAKMKSSAIFINAG  236 (323)
T ss_pred             CCC--h-HHh-hcc--C----HH---HHhcCCCCeEEEECC
Confidence            422  1 111 111  1    12   333345899999976

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.19  E-value=0.031  Score=54.75  Aligned_cols=91  Identities=20%  Similarity=0.193  Sum_probs=61.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|+|. |.+|..+|..+...|.  +|..+|+++... .+..  +.     .+.    .+++++++.||+||.+.
T Consensus       252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~G-----~~~----~~leell~~ADIVI~at  317 (476)
T PTZ00075        252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--EG-----YQV----VTLEDVVETADIFVTAT  317 (476)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--cC-----cee----ccHHHHHhcCCEEEECC
Confidence            45679999999 9999999999998887  899998876322 1111  11     111    14678899999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      |.+   +            ++.  .+.+....|.+++++++-.
T Consensus       318 Gt~---~------------iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        318 GNK---D------------IIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             Ccc---c------------ccC--HHHHhccCCCcEEEEcCCC
Confidence            532   1            111  1233344588899988755

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.17  E-value=0.019  Score=53.10  Aligned_cols=57  Identities=18%  Similarity=0.335  Sum_probs=46.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||.+|.||..++..|...|.  .|.+++...                       .++.+.++.||+||.+.|
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg  211 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVG  211 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecC
Confidence            4467999999966999999999999997  888886431                       145678899999999987


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      .+
T Consensus       212 ~~  213 (301)
T PRK14194        212 RP  213 (301)
T ss_pred             Ch
Confidence            65

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.17  E-value=0.023  Score=54.37  Aligned_cols=63  Identities=19%  Similarity=0.180  Sum_probs=46.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.||+.++..+...|.  +|+.+|.....   .  .  .   ...    ..++++.+++||+|++...
T Consensus       114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~--~---~~~----~~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--E--G---DGD----FVSLERILEECDVISLHTP  176 (381)
T ss_pred             cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--c--c---Ccc----ccCHHHHHhhCCEEEEeCc
Confidence            34569999999 9999999999998888  99999974311   0  0  0   011    1257788899999999864

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.15  E-value=0.027  Score=52.62  Aligned_cols=73  Identities=15%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .++|+|||+ |..|...+..+....-+.+|.+++++.  ++..+.++.+.. ...+..   .+|+++++++||+||.+..
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT~  206 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTTP  206 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEeeC
Confidence            358999998 999998877776533367999999876  333334443221 122322   2467889999999988754

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.14  E-value=0.015  Score=54.79  Aligned_cols=72  Identities=24%  Similarity=0.446  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +.+||+|+||+|.+|.-+...|...+ . +.+|.++...+..|+...+...    .+....  .| .+.++++|+||+++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~-~~~~~~~Divf~a~   76 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AK-INSFEGVDIAFFSA   76 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CC-HHHhcCCCEEEECC
Confidence            34699999999999999999888544 3 3468888765544544433221    233221  23 35678999999987


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      +
T Consensus        77 ~   77 (347)
T PRK06728         77 G   77 (347)
T ss_pred             C
Confidence            5

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.14  E-value=0.097  Score=48.86  Aligned_cols=56  Identities=7%  Similarity=0.030  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           53 IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        53 VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      -|+.+|..|+..|+  +|.++|+++.   ......+.+...    ..   .++..++.+++|+||.+.
T Consensus        31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~---AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV---VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee---cCCHHHHHhCCCEEEEec
Confidence            37899999999998  9999998752   122233443321    11   234678899999999986

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.14  E-value=0.016  Score=50.31  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           36 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        36 ~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ....+.++|+|+|. |.+|++++..|...|.  +|+.+|+++
T Consensus        23 ~~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~--~Vvv~D~~~   61 (200)
T cd01075          23 TDSLEGKTVAVQGL-GKVGYKLAEHLLEEGA--KLIVADINE   61 (200)
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            34456689999999 9999999999999998  999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.14  E-value=0.069  Score=52.19  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-h--hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .++|.|+|+ |.+|..+|..|...|.  +|.++|..+. .  .....+...    .+....+. +. +...++|+||++.
T Consensus        16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~   86 (480)
T PRK01438         16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSP   86 (480)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECC
Confidence            448999999 9999999999999898  8999996541 1  111223322    12222222 11 2356799999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHH--HHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHH
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRT--LCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKK  174 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~--i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~  174 (279)
                      |++..... ....-..+++++.+  ++..+.+...+..+|-+|-..+  ..+.+++.++..
T Consensus        87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            87633211 11112334455433  2222221112334555665555  555666666654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.13  E-value=0.021  Score=53.23  Aligned_cols=73  Identities=10%  Similarity=0.150  Sum_probs=48.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..+++|||+ |..|...+..+....-+.+|.++|+++  +...+.++.+.. ...+..+   ++++++++++|+||.+-.
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT~  201 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVTN  201 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEccC
Confidence            458999998 999987776665443468999999986  233333343221 1233332   467789999999998754

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.13  E-value=0.019  Score=49.42  Aligned_cols=111  Identities=21%  Similarity=0.286  Sum_probs=73.6

Q ss_pred             hhhhhhhccCCCCCCcEEEEEcCCCchHHHHHH-HHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHH
Q 023671           27 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE  104 (279)
Q Consensus        27 ~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~-~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~  104 (279)
                      -+|.-+....+..++.+|.|||+ |.+|.+++. ....+.-..-+..+|+++ .-|..  ..    ...++.   -++++
T Consensus        70 ~L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~--~~----~v~V~~---~d~le  139 (211)
T COG2344          70 YLRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK--IG----DVPVYD---LDDLE  139 (211)
T ss_pred             HHHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc--cC----Ceeeec---hHHHH
Confidence            34555556667777889999999 999999985 555455556788999986 22211  01    112222   23555


Q ss_pred             hhhC--CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671          105 NALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (279)
Q Consensus       105 eal~--~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t  165 (279)
                      +-++  |.|+.|+|.  |              .+-.+++++.+.+.+-+++ +++| |+.+.+
T Consensus       140 ~~v~~~dv~iaiLtV--P--------------a~~AQ~vad~Lv~aGVkGI-lNFt-Pv~l~~  184 (211)
T COG2344         140 KFVKKNDVEIAILTV--P--------------AEHAQEVADRLVKAGVKGI-LNFT-PVRLQV  184 (211)
T ss_pred             HHHHhcCccEEEEEc--c--------------HHHHHHHHHHHHHcCCceE-Eecc-ceEecC
Confidence            5565  899999986  2              2446788888888887774 5666 886654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.12  E-value=0.036  Score=53.42  Aligned_cols=66  Identities=24%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ....+|+|+|. |.+|..++..+...|.  +|+.+|+++.+. .+.  .+.   .  ..    .+++++++++|+||.+.
T Consensus       193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~--~~G---~--~v----~~leeal~~aDVVItaT  258 (406)
T TIGR00936       193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEAA--MDG---F--RV----MTMEEAAKIGDIFITAT  258 (406)
T ss_pred             CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHH--hcC---C--Ee----CCHHHHHhcCCEEEECC
Confidence            45679999999 9999999999988886  899999877321 111  111   1  11    13467889999999876


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      |
T Consensus       259 G  259 (406)
T TIGR00936       259 G  259 (406)
T ss_pred             C
Confidence            4

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.11  E-value=0.053  Score=52.55  Aligned_cols=92  Identities=18%  Similarity=0.132  Sum_probs=60.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ....+|+|+|. |.+|..++..+...|.  +|+++|+++.+. .+..  + .  .  ..    .+++++++++|+||.+.
T Consensus       210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~--~-G--~--~v----~~l~eal~~aDVVI~aT  275 (425)
T PRK05476        210 IAGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM--D-G--F--RV----MTMEEAAELGDIFVTAT  275 (425)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh--c-C--C--Ee----cCHHHHHhCCCEEEECC
Confidence            35679999999 9999999999998887  899999987221 1110  1 1  1  11    13567889999999876


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      |.+               .++.  .+.+....+.+++++++-+-
T Consensus       276 G~~---------------~vI~--~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        276 GNK---------------DVIT--AEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             CCH---------------HHHH--HHHHhcCCCCCEEEEcCCCC
Confidence            422               1121  12233334778888886543

>PRK06484 short chain dehydrogenase; Validated

Probab=96.11  E-value=0.056  Score=53.05  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEE-EeCCCCHH-------hhhCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLE-------NALTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~~~d~~-------eal~~A  110 (279)
                      .+.+.|+||++.+|..++..|+..|.  +|+++|++..  .....++....  ..+.. .+...++.       +.+...
T Consensus         5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPDH--HALAMDVSDEAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            45788999999999999999999997  9999998752  21222221100  00111 00011111       123468


Q ss_pred             CEEEEccCCCC---CC--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          111 DLVIIPAGVPR---KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       111 DiVIitag~~~---k~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++|+++|...   .+  ..+.   ...+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus        81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS  141 (520)
T PRK06484         81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVAS  141 (520)
T ss_pred             CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence            99999998731   11  1121   233455544    55555666554333336666654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.08  E-value=0.038  Score=54.73  Aligned_cols=125  Identities=15%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             HHHhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccC-
Q 023671           13 RISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT-   90 (279)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~-   90 (279)
                      ...+|+|+-      |-.-.-++.+..++.||.|+|+ |.+|...+..+...|-  +|+.+|+++ ....+..+..... 
T Consensus       143 ~~aa~~~~~------~~~g~~taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~  213 (509)
T PRK09424        143 IEAAHEFGR------FFTGQITAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLE  213 (509)
T ss_pred             HHHHHHhcc------cCCCceeccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEE
Confidence            344566653      2233456666777889999999 9999999988888886  799999987 2223332221100 


Q ss_pred             -CC-e--------EEEEeCCCCH--------HhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc
Q 023671           91 -GA-V--------VRGFLGQPQL--------ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA  152 (279)
Q Consensus        91 -~~-~--------v~~~~~~~d~--------~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a  152 (279)
                       .. .        .+..  +.++        .+.++++|+||.|++.|.++..         .-+.++..+.++   |.+
T Consensus       214 i~~~e~~~~~~gya~~~--s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~~v~~mk---pGg  279 (509)
T PRK09424        214 LDFEEEGGSGDGYAKVM--SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAP---------KLITAEMVASMK---PGS  279 (509)
T ss_pred             eccccccccccchhhhc--chhHHHHHHHHHHhccCCCCEEEECCCCCcccCc---------chHHHHHHHhcC---CCC
Confidence             00 0        0000  1121        1224689999999998754321         011244444444   888


Q ss_pred             eEEEecCC
Q 023671          153 TVNLISNP  160 (279)
Q Consensus       153 ~viv~TNP  160 (279)
                      .|+.++-+
T Consensus       280 vIVdvg~~  287 (509)
T PRK09424        280 VIVDLAAE  287 (509)
T ss_pred             EEEEEccC
Confidence            88877764

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.08  E-value=0.16  Score=45.58  Aligned_cols=36  Identities=19%  Similarity=0.211  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+.+.|+||++  -+|..++..|++.|.  .|++.|++.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~   42 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQND   42 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecch
Confidence            345788999953  699999999999997  899998764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.08  E-value=0.024  Score=50.11  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..||.|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            348999999 9999999999999985 6999999775

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.08  E-value=0.029  Score=51.99  Aligned_cols=96  Identities=20%  Similarity=0.274  Sum_probs=61.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|+|- |.+|+.+|..+..-|.  +|+.+|+....        ..    ....  ..++++.++.||+|+++..
T Consensus       120 L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~----~~~~--~~~l~ell~~aDiv~~~lp  182 (303)
T PRK06436        120 LYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG----ISSI--YMEPEDIMKKSDFVLISLP  182 (303)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC----cccc--cCCHHHHHhhCCEEEECCC
Confidence            34569999998 9999999988877787  99999975311        00    0000  1257788999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec--CCCCch
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  164 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T--NPvd~~  164 (279)
                      ...   +++ .++  |       .+.+....|++++|+++  .++|.-
T Consensus       183 ~t~---~T~-~li--~-------~~~l~~mk~ga~lIN~sRG~~vd~~  217 (303)
T PRK06436        183 LTD---ETR-GMI--N-------SKMLSLFRKGLAIINVARADVVDKN  217 (303)
T ss_pred             CCc---hhh-cCc--C-------HHHHhcCCCCeEEEECCCccccCHH
Confidence            221   111 111  1       23333445889999985  556543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.07  E-value=0.018  Score=53.52  Aligned_cols=69  Identities=17%  Similarity=0.301  Sum_probs=45.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+++|||+ |..+...+..+.. .+ +.+|.++|++.  ++..+.++.+ . ...+...   ++.++++++||+|+.+-
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence            38999998 9999887776654 55 88999999986  3455566666 2 3445442   46789999999988764

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.05  E-value=0.024  Score=52.42  Aligned_cols=72  Identities=17%  Similarity=0.074  Sum_probs=51.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..+++|||+ |..|...+..+..-..+++|.++|++.  +...+.++.+.. ...+...   ++.++++++||+|+.+-
T Consensus       117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT  190 (301)
T PRK06407        117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSIT  190 (301)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEec
Confidence            458999998 999998777666555578999999986  344445555421 2234432   46789999999999764

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.99  E-value=0.2  Score=47.20  Aligned_cols=129  Identities=19%  Similarity=0.229  Sum_probs=73.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhCC-CCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~-ADiVIit  116 (279)
                      .+..+|+|+|+ |-+|......+...+.  +|+.+|+++. ...+.+|.-   ..-+.. . ..|.-+++++ +|+||.|
T Consensus       165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGA---d~~i~~-~-~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         165 KPGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGA---DHVINS-S-DSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCC---cEEEEc-C-CchhhHHhHhhCcEEEEC
Confidence            45679999999 9787777777766774  9999999872 233343321   111111 1 1222344433 9999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC-CchHHHHHHHHHHhCCCCCCCeeee---cchhHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLLGV---TMLDVV  192 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv-d~~t~~~~~~~~~~~~~~~~kViG~---t~lds~  192 (279)
                      ++ +               .-+....+.+   .+++.++.+.+|- ..+..+  ..+.  .-+...+|.|.   +..|+.
T Consensus       237 v~-~---------------~~~~~~l~~l---~~~G~~v~vG~~~~~~~~~~--~~~~--li~~~~~i~GS~~g~~~d~~  293 (339)
T COG1064         237 VG-P---------------ATLEPSLKAL---RRGGTLVLVGLPGGGPIPLL--PAFL--LILKEISIVGSLVGTRADLE  293 (339)
T ss_pred             CC-h---------------hhHHHHHHHH---hcCCEEEEECCCCCcccCCC--CHHH--hhhcCeEEEEEecCCHHHHH
Confidence            86 3               1133444444   4788899999994 332211  0011  11335689998   345554


Q ss_pred             HHHHHH
Q 023671          193 RANTFV  198 (279)
Q Consensus       193 R~~~~l  198 (279)
                      .+..+.
T Consensus       294 e~l~f~  299 (339)
T COG1064         294 EALDFA  299 (339)
T ss_pred             HHHHHH
Confidence            444433

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.99  E-value=0.091  Score=48.42  Aligned_cols=114  Identities=11%  Similarity=0.025  Sum_probs=65.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------  106 (279)
                      .+.+.|+||++.+|..++..|+..| .  +|++.++++.  .....++...  ...+.... .-++   .++.       
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   78 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES   78 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            3478899999999999999999998 7  9999988762  1122233211  11222111 1112   1111       


Q ss_pred             hCCCCEEEEccCCCCCC----CCch---hhHHHhhH----HHHHHHHHHHHHhCC-CceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKP----GMTR---DDLFNINA----GIVRTLCEGIAKCCP-NATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~----g~~r---~d~~~~N~----~i~~~i~~~I~~~~p-~a~viv~T  158 (279)
                      ....|++|+.||.....    ..+.   ...+..|.    .+++.+.+.+.+... .+.||++|
T Consensus        79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vs  142 (314)
T TIGR01289        79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVG  142 (314)
T ss_pred             CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            24689999999964221    1122   22344454    456667777765432 35566554

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.98  E-value=0.081  Score=51.55  Aligned_cols=128  Identities=18%  Similarity=0.214  Sum_probs=72.8

Q ss_pred             CCCCcEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           38 GAAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~-la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +-+.+||.|+|. |-.|.+ +|..|...|.  +|...|.+... ...+|...    .+..+.+. + .+.+.++|+||.+
T Consensus         4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~~-~-~~~~~~~d~vv~s   73 (461)
T PRK00421          4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIGH-D-AENIKDADVVVYS   73 (461)
T ss_pred             cCCCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCCC-C-HHHCCCCCEEEEC
Confidence            345568999999 999999 7999999998  99999987632 12234332    12222122 2 3567899999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHHhCCC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTY  178 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~~~~~  178 (279)
                      .|+|...-. .......+++++.+. +.+.+..++..+|-+|-..+  ..|.++.++++. .|+
T Consensus        74 pgi~~~~~~-~~~a~~~~i~i~~~~-e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~-~g~  134 (461)
T PRK00421         74 SAIPDDNPE-LVAARELGIPVVRRA-EMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAE-AGL  134 (461)
T ss_pred             CCCCCCCHH-HHHHHHCCCcEEeHH-HHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHh-cCC
Confidence            998753211 111223344544321 11122222223444444444  566666666654 344

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.98  E-value=0.054  Score=47.31  Aligned_cols=70  Identities=17%  Similarity=0.126  Sum_probs=47.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+||.|||+ |.+|..-+..|+..|.  +|.+++.+.. ....++...   ..+.......+ .+.+.++|+||.+-+
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~   78 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATD   78 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCC
Confidence            459999999 9999999999998886  9999987542 122223322   23443332223 466899999998754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.98  E-value=0.022  Score=53.59  Aligned_cols=35  Identities=31%  Similarity=0.408  Sum_probs=27.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      |+||+|+||+|.+|..++..|...+...-+.+.|.
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~   36 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR   36 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence            57999999999999999988887654433455663

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.97  E-value=0.033  Score=53.84  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      .+..+|+|+|+ |.+|..++..|...| +.+|.++|++..  ...+.++.     ..+..   ..++.+.+.++|+||.+
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~a  249 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKG-VRKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISS  249 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEEC
Confidence            45679999998 999999998888777 358999998752  22222221     11111   13456778999999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHH-HHh-CCCceEEEecCCCCchH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVNSTV  165 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I-~~~-~p~a~viv~TNPvd~~t  165 (279)
                      .+.+... .            ..+.++.. ... ....+++=+++|-|+=.
T Consensus       250 T~s~~~~-i------------~~~~l~~~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        250 TGAPHPI-I------------GKGMVERALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             CCCCCcE-E------------cHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence            7654211 0            11112222 111 24568888899988743

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.97  E-value=0.031  Score=51.73  Aligned_cols=71  Identities=13%  Similarity=0.113  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..+|+|+|+ |..|...+..+.......+|.++|++.  ++..+.++.+.  ...+.    ..+.++++++||+||.+..
T Consensus       125 ~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVitaT~  197 (304)
T PRK07340        125 PGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTATT  197 (304)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEccC
Confidence            458999998 999999988876533347999999986  33344444322  11222    1356789999999999754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.96  E-value=0.11  Score=43.48  Aligned_cols=67  Identities=12%  Similarity=0.063  Sum_probs=44.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +.+||.|+|+ |.||...+..|+..|.  +|.+++.+... ...++.      .+......-. ++.++++|+||.+.
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP------YITWKQKTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence            3569999999 9999999999999887  99999743222 112221      1111111112 35689999998874

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.94  E-value=0.063  Score=52.32  Aligned_cols=122  Identities=20%  Similarity=0.246  Sum_probs=72.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-h--hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +||.|+|. |..|.+++..|...|.  +|.+.|.++. .  ....++...    .+..+.+. +..+.+.++|+||.+.|
T Consensus        15 ~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~~~-~~~~~~~~~dlVV~Spg   86 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL----GVKLVLGE-NYLDKLDGFDVIFKTPS   86 (458)
T ss_pred             CeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC----CCEEEeCC-CChHHhccCCEEEECCC
Confidence            48999998 9999999999999998  9999998652 1  111223322    12222222 22355789999999988


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKK  174 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~  174 (279)
                      ++.... ......+.+++++.++- .+.+.. +..+|-+|-..+  ..+.++..++..
T Consensus        87 i~~~~p-~~~~a~~~~i~i~s~~e-~~~~~~-~~~vIaITGTnGKTTT~~ll~~iL~~  141 (458)
T PRK01710         87 MRIDSP-ELVKAKEEGAYITSEME-EFIKYC-PAKVFGVTGSDGKTTTTTLIYEMLKE  141 (458)
T ss_pred             CCCCch-HHHHHHHcCCcEEechH-Hhhhhc-CCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            864321 11222345666665442 222332 233555555555  555666666654

>PRK07041 short chain dehydrogenase; Provisional

Probab=95.94  E-value=0.048  Score=47.15  Aligned_cols=107  Identities=16%  Similarity=0.226  Sum_probs=59.6

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-C---CCCHHhhh---CCCCEEEEc
Q 023671           46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-G---QPQLENAL---TGMDLVIIP  116 (279)
Q Consensus        46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~---~~d~~eal---~~ADiVIit  116 (279)
                      |+||+|.+|..++..|+++|.  +|+++++++  ......++..   ...+..+. .   ..++.+++   ...|++|+.
T Consensus         2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~   76 (230)
T PRK07041          2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT   76 (230)
T ss_pred             eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence            799999999999999999997  899999875  2222222221   11222211 1   11222333   347999999


Q ss_pred             cCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +|......   .+   -.+.+..|+.....+.+ .....+.+.+++++
T Consensus        77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~~~g~iv~~s  123 (230)
T PRK07041         77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhcCCeEEEEEC
Confidence            98643211   11   12345566655555555 22223345555543

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.93  E-value=0.018  Score=53.99  Aligned_cols=74  Identities=26%  Similarity=0.212  Sum_probs=46.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC--CCeEEEEeCCCCHHh-hhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLEN-ALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~~~d~~e-al~~ADiVIita  117 (279)
                      ++||+|+||+|..|.-+...|...+.+ |+.++...+..|+...-.|-..  ...+...  +.|.++ ..++||+||.+-
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFlal   78 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLAL   78 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEec
Confidence            579999999999999999999988755 5888876654444332222211  1112221  112222 245699999974

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=95.92  E-value=0.022  Score=53.53  Aligned_cols=72  Identities=25%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +.+||+|+||+|.+|..+...|..+. ...+|.++-.+...|+...+...    .+.... . + +.++.++|+||++++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~-~-~-~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD-A-A-EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe-C-c-hhhccCCCEEEECCC
Confidence            45699999999999999999888743 24588888655433443333211    233211 1 2 234589999999865

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.92  E-value=0.017  Score=57.61  Aligned_cols=103  Identities=19%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh-----CCC-----CcEEEEEeCCC--chhHHhhhhcccC-C-CeEEEEeCCCCHHhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVN--TPGVTADISHMDT-G-AVVRGFLGQPQLENA  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~-----~~~-----~~ev~L~D~~~--~~g~~~DL~~~~~-~-~~v~~~~~~~d~~ea  106 (279)
                      ..||.+.|| |..|..++..|..     .|+     ..+++++|.+-  ..+...+|.+... + ....   ...++.++
T Consensus       321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L~e~  396 (581)
T PLN03129        321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE---PGASLLEA  396 (581)
T ss_pred             hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc---cCCCHHHH
Confidence            469999999 9999999987765     355     25899999865  1111100221110 0 0111   12478999


Q ss_pred             hCC--CCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          107 LTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       107 l~~--ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      +++  +|+.|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||.
T Consensus       397 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~rPIIFaLSNPt  439 (581)
T PLN03129        397 VKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNERPIIFALSNPT  439 (581)
T ss_pred             HhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence            999  89988776543   2           13568889999999999999999997

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=95.91  E-value=0.069  Score=46.45  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVV   76 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~   76 (279)
                      +.+.|+||+|++|..++..|+..|.  +|++. +.+
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~   35 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY--TVAVNYQQN   35 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            3689999999999999999999987  77664 443

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.89  E-value=0.033  Score=52.13  Aligned_cols=65  Identities=25%  Similarity=0.320  Sum_probs=47.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .++|+|||. |.+|+.++..+..-|.  +|..||.........  .+     .+.   ...++++-++.||||++...
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~---~~~~Ld~lL~~sDiv~lh~P  206 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVV---GVDSLDELLAEADILTLHLP  206 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----cce---ecccHHHHHhhCCEEEEcCC
Confidence            679999999 9999999999998898  999999843211111  00     011   12357888999999999763

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.89  E-value=0.055  Score=50.65  Aligned_cols=93  Identities=27%  Similarity=0.323  Sum_probs=59.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++++|+|. |.+|+.+|..+.--|.  +|+.+|+.+. .+..+...      .+ +  . ++++.++.||+|++.+.
T Consensus       144 l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~------~~-y--~-~l~ell~~sDii~l~~P  209 (324)
T COG1052         144 LRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELG------AR-Y--V-DLDELLAESDIISLHCP  209 (324)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcC------ce-e--c-cHHHHHHhCCEEEEeCC
Confidence            55789999998 9999999999984455  9999998652 11111111      11 1  1 36788999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ...   +++.   .-|.       +.+++..|.+++|+.+
T Consensus       210 lt~---~T~h---Lin~-------~~l~~mk~ga~lVNta  236 (324)
T COG1052         210 LTP---ETRH---LINA-------EELAKMKPGAILVNTA  236 (324)
T ss_pred             CCh---HHhh---hcCH-------HHHHhCCCCeEEEECC
Confidence            321   1111   1121       2344445888998875

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=95.88  E-value=0.084  Score=47.77  Aligned_cols=76  Identities=18%  Similarity=0.191  Sum_probs=43.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +++||+|.||+|.+|+.+...+.+.+-..=+..+|.......-.|.........+... .++|+.....++|++|=.
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~-v~~~~~~~~~~~DV~IDF   76 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP-VTDDLLLVKADADVLIDF   76 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCce-eecchhhcccCCCEEEEC
Confidence            3679999999999999999999887744444556665411111122222111111110 122445567788888753

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.86  E-value=0.035  Score=51.80  Aligned_cols=73  Identities=16%  Similarity=0.232  Sum_probs=49.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..+++|||+ |..|...+..|....-+.+|.+++++.  ++..+.++.+.. ...+..   .+++++++++||+||.+-.
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~  203 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP  203 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence            358999998 999988888776433357999999986  333444443221 122322   2467889999999998754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.85  E-value=0.045  Score=45.04  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=46.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+.++|.|+|.+..+|..++..|..++.  .+.+.|.+                       +.++++++++||+||.+.|
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg   80 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP   80 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence            4467999999999999999999998876  77777642                       1246778999999999988


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      .+
T Consensus        81 ~~   82 (140)
T cd05212          81 KP   82 (140)
T ss_pred             CC
Confidence            65

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.84  E-value=0.046  Score=52.09  Aligned_cols=35  Identities=26%  Similarity=0.447  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..||.|+|+ |-+|+.++..|+..|. .+|.++|.+.
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            348999999 9999999999999884 6999999874

>PLN02306 hydroxypyruvate reductase

Probab=95.83  E-value=0.063  Score=51.46  Aligned_cols=103  Identities=22%  Similarity=0.272  Sum_probs=59.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHH---hhhhcc---cCCCeEEEEeCCCCHHhhhCCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISHM---DTGAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~~~g~~---~DL~~~---~~~~~v~~~~~~~d~~eal~~AD  111 (279)
                      ...++|+|||. |.+|+.+|..+. .-|.  +|..||........   ..+...   ........ ....++++.++.||
T Consensus       163 L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~L~ell~~sD  238 (386)
T PLN02306        163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTW-KRASSMEEVLREAD  238 (386)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccc-cccCCHHHHHhhCC
Confidence            34569999998 999999998875 4566  99999975421110   011100   00001111 01236889999999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +|++.+...  + +++ .++  |    .   +.++.-.|++++|+++
T Consensus       239 iV~lh~Plt--~-~T~-~li--n----~---~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        239 VISLHPVLD--K-TTY-HLI--N----K---ERLALMKKEAVLVNAS  272 (386)
T ss_pred             EEEEeCCCC--h-hhh-hhc--C----H---HHHHhCCCCeEEEECC
Confidence            999976321  1 111 111  1    1   2333444889999986

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.82  E-value=0.0037  Score=52.63  Aligned_cols=45  Identities=27%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             hhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           30 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        30 ~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -.+-++++..++.||+|+|+ |.||...+..+...|.  +++.+|.+.
T Consensus         9 ~~~~~~~~~~~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~   53 (168)
T PF01262_consen    9 GMLLGGPGGVPPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP   53 (168)
T ss_dssp             SHEECTTTEE-T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred             ceeccCCCCCCCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence            34456667778899999998 9999999999998887  999999865

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.80  E-value=0.075  Score=53.76  Aligned_cols=138  Identities=16%  Similarity=0.198  Sum_probs=81.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HH-hhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LE-NALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~-eal~~ADiVIit  116 (279)
                      ..+|.|+|. |.+|+.++..|..+++  +++++|.|+..  +..+.+.. ..-+.+  ..++   ++ ..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence            358999999 9999999999998888  99999998621  12222221 111222  1223   11 125799999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe-cCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~-TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~  195 (279)
                      .+.+           ..|    ..++..+++.+|+..++.- .||.+.      +.+++. |  .+.|+=-+..-+.++-
T Consensus       472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~~------~~L~~~-G--a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVEA------HELLQA-G--VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHHH------HHHHhC-C--CCEEEccHHHHHHHHH
Confidence            5311           233    3455667788898766544 555433      233432 3  3455443433334444


Q ss_pred             HHHHHHcCCCCCCCc
Q 023671          196 TFVAEVLGLDPRDVD  210 (279)
Q Consensus       196 ~~la~~l~v~~~~V~  210 (279)
                      ...=..+|+++.++.
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            444477788887764

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.79  E-value=0.042  Score=51.02  Aligned_cols=71  Identities=15%  Similarity=0.298  Sum_probs=48.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      ...+|+|||+ |.+|...+..+.. .+ ..+|.++|+++  ++..+.++.+.  ...+...   .+.++++++||+|+.+
T Consensus       124 ~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~a  196 (314)
T PRK06141        124 DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCA  196 (314)
T ss_pred             CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEe
Confidence            3458999998 9999999875554 44 56999999876  33334444332  1123332   3567889999999665


Q ss_pred             c
Q 023671          117 A  117 (279)
Q Consensus       117 a  117 (279)
                      .
T Consensus       197 T  197 (314)
T PRK06141        197 T  197 (314)
T ss_pred             e
Confidence            4

>PRK13529 malate dehydrogenase; Provisional

Probab=95.79  E-value=0.025  Score=56.29  Aligned_cols=106  Identities=19%  Similarity=0.318  Sum_probs=71.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCC--chhHHhhhhccc---C--CCeEEEE---eCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--TPGVTADISHMD---T--GAVVRGF---LGQP  101 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~----~~~~-----~ev~L~D~~~--~~g~~~DL~~~~---~--~~~v~~~---~~~~  101 (279)
                      ..||.+.|| |..|..+|..|..    .|+-     .+++++|.+-  ..+. .||.+..   .  .......   ....
T Consensus       295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~~~  372 (563)
T PRK13529        295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDM-PDLLDFQKPYARKREELADWDTEGDVI  372 (563)
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCC-CcchHHHHHHhhhcccccccccccCCC
Confidence            369999999 9999999987765    5653     5999999865  1111 1122110   0  0111000   0124


Q ss_pred             CHHhhhCCC--CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          102 QLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       102 d~~eal~~A--DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      ++.++++++  |+.|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..
T Consensus       373 ~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~  421 (563)
T PRK13529        373 SLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS  421 (563)
T ss_pred             CHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            788999998  9988776544   2           235688999999999999999999986

>PRK06484 short chain dehydrogenase; Validated

Probab=95.77  E-value=0.096  Score=51.39  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEE-EeCCCCHHhh-------hCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~~~d~~ea-------l~~A  110 (279)
                      .+++.|+||+|.+|..++..|+.+|.  +|++.|+++.  +....++...  ...+.. .....++.+.       +...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDE--HLSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc--eeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999997  9999998752  1111111110  001111 0001112222       2357


Q ss_pred             CEEEEccCCCC--CC--CCch---hhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCC
Q 023671          111 DLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  161 (279)
Q Consensus       111 DiVIitag~~~--k~--g~~r---~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPv  161 (279)
                      |++|++||...  .+  ..+.   ...+..|+.-...+.+.+..+ ...+.|+++|...
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~  403 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA  403 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            99999999752  11  1221   234555655544444444332 2346777776543

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.76  E-value=0.16  Score=42.81  Aligned_cols=66  Identities=15%  Similarity=0.178  Sum_probs=42.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +.++|+|||. |.-|...|..|...|+  +|..-.+........  ...+.+   +    ..+..|+.+.||+|+++.
T Consensus         3 ~~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~--A~~~Gf---~----v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    3 KGKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEK--AKADGF---E----VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHH--HHHTT----E----CCEHHHHHHC-SEEEE-S
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHH--HHHCCC---e----eccHHHHHhhCCEEEEeC
Confidence            4569999999 9999999999999998  877776654311111  111111   1    124679999999999985

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.74  E-value=0.042  Score=49.29  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .||.|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus        33 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         33 ARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            48999999 9999999999999985 6999999875

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.73  E-value=0.052  Score=48.14  Aligned_cols=37  Identities=19%  Similarity=0.147  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           39 AAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        39 ~~~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+.+.+.|+||+  +-+|..++..|+..|.  +|++.++++
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            345689999997  5899999999999998  899998764

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.72  E-value=0.044  Score=50.15  Aligned_cols=94  Identities=12%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             CcccchhhhhhhhccC--CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEE
Q 023671           21 PNLQNSCLRQAKCRAK--GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG   96 (279)
Q Consensus        21 ~~~~~~~~~~~~~~~~--~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~   96 (279)
                      -|--..=|..++...-  +..+.+++.|+|+ |-++..+++.|...|. .+|.+++++.  ++..+.++...   ..+..
T Consensus       103 ~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~  177 (282)
T TIGR01809       103 DNTDWDGIAGALANIGKFEPLAGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITR  177 (282)
T ss_pred             ecCCHHHHHHHHHhhCCccccCCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---Cccee
Confidence            3444444555665432  1235668999999 9999999999998884 5899999875  22233333211   11221


Q ss_pred             EeCCCCHHhhhCCCCEEEEccCC
Q 023671           97 FLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        97 ~~~~~d~~eal~~ADiVIitag~  119 (279)
                      .....++.+.+.++|+||.|...
T Consensus       178 ~~~~~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       178 LEGDSGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             ccchhhhhhcccCCCEEEECCCC
Confidence            11012233556899999998644

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.71  E-value=0.046  Score=48.92  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .||.|+|+ |-+|+.++..|+..|. .++.++|.+.
T Consensus        25 ~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        25 SRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            48999999 9999999999999984 6999999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.69  E-value=0.083  Score=53.69  Aligned_cols=138  Identities=17%  Similarity=0.221  Sum_probs=82.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCH---H-hhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~---~-eal~~ADiVIit  116 (279)
                      ..+|.|+|. |.+|+.++..|..++.  +++++|.|+.+  +..+.+.. ..-+.+  ..++.   + ..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG-MKVFYG--DATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC-CeEEEE--eCCCHHHHHhcCCCcCCEEEEE
Confidence            368999999 9999999999998888  89999998621  22222211 111222  12232   1 235689999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-CCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-NPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~  195 (279)
                      .+.+           +.|    ..++..+++..|+..++.-+ |+.+.      +.+++ .|  .+.++--+...+.++-
T Consensus       472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~~------~~L~~-~G--ad~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDHY------IRLRQ-AG--VEKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHH------HHHHH-CC--CCEEehhhHhHHHHHH
Confidence            5311           234    34556667778987665544 43321      22333 23  3445444554455666


Q ss_pred             HHHHHHcCCCCCCCc
Q 023671          196 TFVAEVLGLDPRDVD  210 (279)
Q Consensus       196 ~~la~~l~v~~~~V~  210 (279)
                      +.+-+.+|+++.+++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (621)
T PRK03562        528 RLVLESLGLGPYEAR  542 (621)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            666678888876663

>PRK08223 hypothetical protein; Validated

Probab=95.69  E-value=0.052  Score=49.89  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .||.|+|+ |-+|+.++..|+..|. .+|.|+|-+.
T Consensus        28 s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            48999999 9999999999999995 6999999875

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.69  E-value=0.05  Score=47.21  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .||.|+|+ |-+|+.++..|+..|. .++.++|.+.
T Consensus        20 s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          20 AKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            48999999 8899999999999995 6899999774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.66  E-value=0.072  Score=51.36  Aligned_cols=71  Identities=23%  Similarity=0.196  Sum_probs=44.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE-eCCCCHHhh-hCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENA-LTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~-~~~~d~~ea-l~~ADiVIita  117 (279)
                      |||.|+|+ |.+|..++..|...+.  +++++|.++...  ..+.......-+.+- .....++++ +.++|.||++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            58999999 9999999999998887  999999876211  112110000011110 001123444 78999999985

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.65  E-value=0.067  Score=49.10  Aligned_cols=89  Identities=18%  Similarity=0.203  Sum_probs=53.0

Q ss_pred             hhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHH
Q 023671           27 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLE  104 (279)
Q Consensus        27 ~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~  104 (279)
                      =|.+.+.......+.+++.|+|| |-.+.++++.|+..|. .+|.++|++.  ++..+.++........+.... ..++.
T Consensus       113 Gf~~~L~~~~~~~~~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~-~~~~~  189 (283)
T PRK14027        113 GFGRGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIE  189 (283)
T ss_pred             HHHHHHHhcCcCcCCCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhccCcceEEecC-HhHHH
Confidence            35555543222244568999999 9999999999998774 5899999875  233333332211111122111 11223


Q ss_pred             hhhCCCCEEEEccC
Q 023671          105 NALTGMDLVIIPAG  118 (279)
Q Consensus       105 eal~~ADiVIitag  118 (279)
                      +.+.++|+||.+..
T Consensus       190 ~~~~~~divINaTp  203 (283)
T PRK14027        190 DVIAAADGVVNATP  203 (283)
T ss_pred             HHHhhcCEEEEcCC
Confidence            35678999999854

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.65  E-value=0.044  Score=51.74  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=49.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..+++|||+ |..+...+..+..-..+.+|.++|++.  ....+.++.+.  ..++..   .++.++++++||+|+.+-
T Consensus       129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence            458999998 999987776555433568999999986  33444455432  223443   246789999999999865

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.64  E-value=0.053  Score=49.79  Aligned_cols=77  Identities=18%  Similarity=0.317  Sum_probs=53.5

Q ss_pred             cCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE
Q 023671           18 LYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF   97 (279)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~   97 (279)
                      ++-||--.+|.+-...... ..+.++|+|+|++|.+|..++..|+..+.  +|.+++..                     
T Consensus       137 ~~~p~T~~gii~~L~~~~i-~l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~---------------------  192 (283)
T PRK14192        137 AYGSATPAGIMRLLKAYNI-ELAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR---------------------  192 (283)
T ss_pred             cccCCcHHHHHHHHHHcCC-CCCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC---------------------
Confidence            3456655666553322221 34567999999955699999999998885  88888641                     


Q ss_pred             eCCCCHHhhhCCCCEEEEccCCC
Q 023671           98 LGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        98 ~~~~d~~eal~~ADiVIitag~~  120 (279)
                        +.++.+.+++||+||.+.|.|
T Consensus       193 --t~~L~~~~~~aDIvI~AtG~~  213 (283)
T PRK14192        193 --TQNLPELVKQADIIVGAVGKP  213 (283)
T ss_pred             --chhHHHHhccCCEEEEccCCC
Confidence              124566789999999998744

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.63  E-value=0.072  Score=48.99  Aligned_cols=95  Identities=18%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             cccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcc---cCCCeEEEE
Q 023671           22 NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM---DTGAVVRGF   97 (279)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~---~~~~~v~~~   97 (279)
                      |--..=|.+++.......+.+++.|+|| |-.+.+++..|+..|. .+|.++++++. ...+.+|.+.   .....+...
T Consensus       105 NTD~~Gf~~~l~~~~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~  182 (288)
T PRK12749        105 NTDGTGHIRAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVT  182 (288)
T ss_pred             ecCHHHHHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHhhhccCceEEEe
Confidence            4443445666654332345568999999 8889998888887774 69999999742 1222222221   111122221


Q ss_pred             eCC--CCHHhhhCCCCEEEEccC
Q 023671           98 LGQ--PQLENALTGMDLVIIPAG  118 (279)
Q Consensus        98 ~~~--~d~~eal~~ADiVIitag  118 (279)
                      .-.  ..+.+++.++|+||.+-.
T Consensus       183 ~~~~~~~l~~~~~~aDivINaTp  205 (288)
T PRK12749        183 DLADQQAFAEALASADILTNGTK  205 (288)
T ss_pred             chhhhhhhhhhcccCCEEEECCC
Confidence            100  012345778999999853

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.60  E-value=0.059  Score=48.82  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             hhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHh
Q 023671           28 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLEN  105 (279)
Q Consensus        28 ~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~e  105 (279)
                      |..++.......+.+++.|+|+ |.+|..++..|...+.  +|.++|++.  ++..+.++...   ..+....  .+ +.
T Consensus       104 ~~~~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~---~~~~~~~--~~-~~  174 (270)
T TIGR00507       104 LVSDLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRY---GEIQAFS--MD-EL  174 (270)
T ss_pred             HHHHHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhc---CceEEec--hh-hh
Confidence            4455544322234568999999 9999999999998885  999999875  22222333221   1122221  11 23


Q ss_pred             hhCCCCEEEEccCCC
Q 023671          106 ALTGMDLVIIPAGVP  120 (279)
Q Consensus       106 al~~ADiVIitag~~  120 (279)
                      .+.++|+||.+.+..
T Consensus       175 ~~~~~DivInatp~g  189 (270)
T TIGR00507       175 PLHRVDLIINATSAG  189 (270)
T ss_pred             cccCccEEEECCCCC
Confidence            356899999997653

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.59  E-value=0.034  Score=49.20  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE--EeCCCCHHhhhCCCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ++|.|+||+|++|++++..|+..++  +|+..-++.......  . .  ...+..  ......+..+++|.|.++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~--~-~--~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAAL--A-G--GVEVVLGDLRDPKSLVAGAKGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhh--c-C--CcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence            5899999999999999999999987  877776654211112  2 1  111211  22233566778999999998764


Q ss_pred             C
Q 023671          120 P  120 (279)
Q Consensus       120 ~  120 (279)
                      .
T Consensus        74 ~   74 (275)
T COG0702          74 L   74 (275)
T ss_pred             c
Confidence            4

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.57  E-value=0.048  Score=50.12  Aligned_cols=57  Identities=18%  Similarity=0.371  Sum_probs=45.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+.++|+|||+++.||..++..|...+.  .|..++.+                       +.++.+.+++||+||.++|
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg  210 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVG  210 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCC
Confidence            4567999999955599999999998875  77777532                       1256778999999999998


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      .|
T Consensus       211 ~p  212 (286)
T PRK14175        211 KP  212 (286)
T ss_pred             CC
Confidence            65

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.57  E-value=0.076  Score=50.54  Aligned_cols=33  Identities=30%  Similarity=0.582  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      .||.|+|+ |-+|+.++..|+..|. .+|.|+|.+
T Consensus       136 ~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            48999999 9999999999999995 699999987

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.56  E-value=0.038  Score=46.57  Aligned_cols=67  Identities=22%  Similarity=0.305  Sum_probs=43.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..+++.|+|- |.+|..+|..|...|.  +|..+|+++.+.... ..+.   ..+.      +++++++.+|++|.+-|.
T Consensus        22 ~Gk~vvV~GY-G~vG~g~A~~lr~~Ga--~V~V~e~DPi~alqA-~~dG---f~v~------~~~~a~~~adi~vtaTG~   88 (162)
T PF00670_consen   22 AGKRVVVIGY-GKVGKGIARALRGLGA--RVTVTEIDPIRALQA-AMDG---FEVM------TLEEALRDADIFVTATGN   88 (162)
T ss_dssp             TTSEEEEE---SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHH-HHTT----EEE-------HHHHTTT-SEEEE-SSS
T ss_pred             CCCEEEEeCC-CcccHHHHHHHhhCCC--EEEEEECChHHHHHh-hhcC---cEec------CHHHHHhhCCEEEECCCC
Confidence            4568999999 9999999999998887  999999988322111 1111   1121      367899999998887653

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.53  E-value=0.047  Score=50.14  Aligned_cols=57  Identities=18%  Similarity=0.323  Sum_probs=45.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||.||.||..++..|+..+.  .|.++...                       +.++.+.+++||+||.+.|
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg  210 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIG  210 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecC
Confidence            3467999999999999999999998886  77766210                       1246678999999999998


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      .+
T Consensus       211 ~~  212 (284)
T PRK14179        211 RG  212 (284)
T ss_pred             cc
Confidence            65

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.53  E-value=0.18  Score=41.07  Aligned_cols=115  Identities=19%  Similarity=0.200  Sum_probs=69.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHhhhhcccCCCeEEEEeC-CCCH----------Hhhh
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~-~~d~----------~eal  107 (279)
                      .+.|+||+|-+|..++..|++++ ...|+++++++    ......++...  ..++..+.. ..+.          .+..
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g-~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRG-ARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcC-ceEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            58899999999999999999984 23889998872    12222333322  133333211 1111          1223


Q ss_pred             CCCCEEEEccCCCCCCCC---c---hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          108 TGMDLVIIPAGVPRKPGM---T---RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~---~---r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ...|++|.++|.......   +   -...+..|+.....+.+.+.. .+.+.|+++|...
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~  137 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA  137 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence            589999999998652211   1   123456676666666666666 4577777777544

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.51  E-value=0.061  Score=50.13  Aligned_cols=71  Identities=13%  Similarity=0.107  Sum_probs=49.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..+++|||+ |..+...+..+..-..+++|.++|++.  +...+..+.+.  ...+...   ++.++++++||+|+.+-
T Consensus       128 ~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        128 VSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence            458999998 999998887776555578999999987  23333333322  2234432   46789999999999764

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.51  E-value=0.36  Score=45.01  Aligned_cols=160  Identities=18%  Similarity=0.152  Sum_probs=92.2

Q ss_pred             ccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCC---------
Q 023671           34 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQP---------  101 (279)
Q Consensus        34 ~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~---------  101 (279)
                      +..-+.+.+-+.|+||+.-+|..+|..|+.+|.  +|++..++.  .+..+.++.......++.... .-.         
T Consensus        28 ~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga--~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa  105 (314)
T KOG1208|consen   28 THGIDLSGKVALVTGATSGIGFETARELALRGA--HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFA  105 (314)
T ss_pred             eccccCCCcEEEEECCCCchHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHH
Confidence            333334456788999999999999999999995  999999886  333345555422122222111 001         


Q ss_pred             -CHHhhhCCCCEEEEccCCCCCCCCchhh----HHHhh----HHHHHHHHHHHHHhCCCceEEEecC-C-------CCch
Q 023671          102 -QLENALTGMDLVIIPAGVPRKPGMTRDD----LFNIN----AGIVRTLCEGIAKCCPNATVNLISN-P-------VNST  164 (279)
Q Consensus       102 -d~~eal~~ADiVIitag~~~k~g~~r~d----~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN-P-------vd~~  164 (279)
                       .+......-|+.|..||+...+.....|    .+..|    .-+.+.+.+.+++..| +.||++|. .       -++.
T Consensus       106 ~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS~~~~~~~~~~~l~  184 (314)
T KOG1208|consen  106 EEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSSILGGGKIDLKDLS  184 (314)
T ss_pred             HHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcCccccCccchhhcc
Confidence             1223346889999999986544322111    22334    3567788888887777 65555543 2       1121


Q ss_pred             HHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcC
Q 023671          165 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG  203 (279)
Q Consensus       165 t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~  203 (279)
                      -       .+...+...+.++.+.+.-.-+-..+++++.
T Consensus       185 ~-------~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~  216 (314)
T KOG1208|consen  185 G-------EKAKLYSSDAAYALSKLANVLLANELAKRLK  216 (314)
T ss_pred             c-------hhccCccchhHHHHhHHHHHHHHHHHHHHhh
Confidence            1       1111133334455554444445667777774

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=95.50  E-value=0.16  Score=39.98  Aligned_cols=72  Identities=26%  Similarity=0.329  Sum_probs=39.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ||+|+|++|.+|..++..+...+.+ ++..+ +.+...+......+... ......+. ..++.  ..++|+||++.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence            6899998799999999888875433 45444 65432232221111110 00001111 12332  358999999863

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.48  E-value=0.051  Score=51.24  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=29.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      +++||+|+||+|++|+.++..|...+.. ||++++..
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s   37 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWF-EVTALAAS   37 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcC
Confidence            3579999999999999999988876543 88888443

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=95.47  E-value=0.17  Score=55.68  Aligned_cols=117  Identities=11%  Similarity=0.010  Sum_probs=68.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhH-Hhhhhcc---------cCCCeEEEEeCC--------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGV-TADISHM---------DTGAVVRGFLGQ--------  100 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~--~~~ev~L~D~~~~~g~-~~DL~~~---------~~~~~v~~~~~~--------  100 (279)
                      .++|.|+||+|++|++++..|+..+  ...+|+...+...... ...+.+.         ....++..+.+.        
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence            4689999999999999999888776  3336766666431111 1111110         000123322110        


Q ss_pred             --CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          101 --PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       101 --~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                        ..+.+...++|+||++|+... ......++...|+...+++++...+.....++.+.|
T Consensus      1051 ~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS 1109 (1389)
T TIGR03443      1051 SDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSS 1109 (1389)
T ss_pred             CHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeC
Confidence              123344578999999987542 222334444569999999999888655444444444

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.46  E-value=0.043  Score=51.32  Aligned_cols=67  Identities=15%  Similarity=0.151  Sum_probs=47.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+.++|+|||- |.+|..+|..|...|+  +|+.+|...   ...+......   ...    .++.++++.||+|+++..
T Consensus        14 LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~---~s~~~A~~~G---~~v----~sl~Eaak~ADVV~llLP   80 (335)
T PRK13403         14 LQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPG---KSFEVAKADG---FEV----MSVSEAVRTAQVVQMLLP   80 (335)
T ss_pred             hCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcc---hhhHHHHHcC---CEE----CCHHHHHhcCCEEEEeCC
Confidence            45679999999 9999999999999998  999998542   1111111111   111    146789999999999863

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.46  E-value=0.065  Score=49.73  Aligned_cols=102  Identities=20%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEc
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIit  116 (279)
                      +.++-||+|||+ |.||.+-|......+  .+|.++|.+..+-.-+  .+.. ..++.. .+...+++++++.+|+||-+
T Consensus       165 GV~~~kv~iiGG-GvvgtnaAkiA~glg--A~Vtild~n~~rl~~l--dd~f-~~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         165 GVLPAKVVVLGG-GVVGTNAAKIAIGLG--ADVTILDLNIDRLRQL--DDLF-GGRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CCCCccEEEECC-ccccchHHHHHhccC--CeeEEEecCHHHHhhh--hHhh-CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            455679999999 999999988776444  4999999975211111  1111 233333 23345788999999999988


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~  157 (279)
                      .-+|.....         .-+.++..+.|+   |.++++=+
T Consensus       239 VLIpgakaP---------kLvt~e~vk~Mk---pGsVivDV  267 (371)
T COG0686         239 VLIPGAKAP---------KLVTREMVKQMK---PGSVIVDV  267 (371)
T ss_pred             EEecCCCCc---------eehhHHHHHhcC---CCcEEEEE
Confidence            655522111         123455555555   66666543

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.45  E-value=0.4  Score=42.27  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        40 ~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      +.++|.|+||+|  .+|..++..|+..|.  +|++++++
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~--~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGI--DIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCC--cEEEEcCC
Confidence            345899999974  699999999999997  89999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-125
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-114
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		2e-74
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		2e-74
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		1e-66
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		2e-66
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		2e-65
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		1e-63
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		1e-17
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		4e-15
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		8e-15
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		1e-14
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		8e-13
1guz_A	310	Structural Basis For Thermophilic Protein Stability		1e-12
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		3e-12
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		3e-12
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		3e-12
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-12
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-12
1guy_A	309	Structural Basis For Thermophilic Protein Stability		4e-12
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		1e-11
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		1e-11
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		1e-11
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		1e-10
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		2e-10
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		2e-10
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		2e-10
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		3e-10
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		4e-10
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		5e-10
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		6e-10
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		7e-10
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		2e-08
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-08
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		3e-08
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		3e-08
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		3e-08
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		3e-08
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		4e-08
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		1e-07
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		4e-07
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		6e-07
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		6e-07
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		6e-07
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		1e-06
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		1e-06
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		2e-06
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		9e-06
1bmd_A	327	Determinants Of Protein Thermostability Observed In		1e-05
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		1e-05
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-05
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		2e-05
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		3e-05
1ldb_A	317	Structure Determination And Refinement Of Bacillus		3e-05
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-05
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-05
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		3e-05
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		4e-05
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		4e-05
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		7e-05
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		8e-05
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		8e-05
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		9e-05
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		1e-04
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		2e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		2e-04
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		2e-04
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		4e-04
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		5e-04
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		6e-04
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		7e-04
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		7e-04
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		8e-04
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		8e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  442 bits (1137), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/271 (82%), Positives = 234/271 (86%), Gaps = 3/271 (1%)
Query: 1   MEFSSEANQRIARISAHLYPPNLQ---NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 57
           M+   + NQRIARISAHL+PP  Q   +S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 58  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 177
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 178 YDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQ 237
           YDPK+LLGVTMLDVVRANTFVAE                HAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 238 EETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSM 271

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/235 (86%), Positives = 209/235 (88%)
Query: 34  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 93
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 153
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 154 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXX 213
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAE             
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 214 XXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
              HAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/226 (61%), Positives = 167/226 (73%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 227

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/226 (61%), Positives = 167/226 (73%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 222
           ST+PI AEVFKK G Y+P K+ GVT LD+VRANTFVAE                HAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSM 255

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  249 bits (635), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 160/229 (69%), Gaps = 4/229 (1%)
Query: 42  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 99
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 160/229 (69%), Gaps = 4/229 (1%)
Query: 42  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 99
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  245 bits (625), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/229 (58%), Positives = 159/229 (69%), Gaps = 4/229 (1%)
Query: 42  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 99
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
           PVN+TV IAAEV KKAG YD  KL GVT LD++ +NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 220 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/227 (58%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
Query: 43  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 100
           KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL G D+V+I AGV RKPG  R DLFN+NAGIV++L E IA  CPNA + +I+NP
Sbjct: 65  DPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGV 220
           VN+TVPIAAEV KKAG YD +KL GVT LDV+R+ TFVAE                H+GV
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 221 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 267
           TILPLLSQV+    F+ EE   LT RIQN GTEVVEAKAG GSATLS
Sbjct: 184 TILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLS 229

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VRG 96
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T  +      VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                 LEN+    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CPNA V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXX 216
           I+NP++  V     + K +G  D K +    +LD  R  TF+A+                
Sbjct: 121 ITNPLDIXV---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGG 177
Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVV 255
           H G T +PL          L Q+       QE  + + +R ++GG E+V
Sbjct: 178 H-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV 225

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 26/229 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     + V GF  +
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPVDGFDAK 63
Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P A V  I
Sbjct: 64  FTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI 123
Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXX 216
           +NP+++ V       +K       K++G+  +LD  R   F++E                
Sbjct: 124 TNPLDAMV----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGG 179
Query: 217 HAGVTI----------LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVV 255
           H    +          +PL   VK   + +Q++ + +  R ++GG E+V
Sbjct: 180 HGDSMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV 227

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH----MDTGAVVRG 96
           K++I+GA G IG  +A+L+    L  V +++D++     G   D++H    + + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                 L+N+    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR 193
           I+NP+++ V      FK+       K+ G++ +LD  R
Sbjct: 130 ITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSAR 163

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 12/160 (7%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + +++NPV++   +   
Sbjct: 80  DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTYS 136
Query: 171 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 228
           VFK+AG +  ++++G + +LD  R  TF+A+                H G  ++PL+   
Sbjct: 137 VFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 229 ----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
               +       +E  E +  R + GG E+V    G GSA
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSA 233

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 28/230 (12%)
Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 101
            K+ ++GA G +G   A  +    L   L L DVV        +   +TG V  G     
Sbjct: 1   MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPV--GLF--- 54
Query: 102 QLENALTGM---------DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152
             +  +TG          D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N 
Sbjct: 55  --DTKITGSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNP 112
Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
            + ++SNP++    +A   + ++G   PK +++G+  +LD  R  +F+A           
Sbjct: 113 IIIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDIN 167
Query: 211 XXXXXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVE 256
                 H  A V ++   +    P S     E  + L  R +NGG E+VE
Sbjct: 168 ACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 22/227 (9%)
Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VR 95
            K+ ++GA G +G   A  +    L   L L DVV        +   ++G V      V 
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 96  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           G        N+    D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + 
Sbjct: 60  GSNDYADTANS----DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIII 115
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXX 213
           ++SNP++    +A   + ++G   PK +++G+  +LD  R  +F+A              
Sbjct: 116 VVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACV 170
Query: 214 XXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVE 256
              H  A V ++   +    P S     E  + L  R +NGG E+VE
Sbjct: 171 LGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTGAVVRG 96
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 151
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 124 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 179
Query: 211 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 256
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 180 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 234

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTGAVVRG 96
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 151
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 211 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 256
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM----DTGAVVRG 96
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 151
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 210
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMXE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 211 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 256
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 171 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 228
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFST 187
Query: 229 VK--PPCSFTQ-EETEYLTNRIQNGGTEVV 255
           +   P   F   +    +  R + GG E+V
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 171 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 228
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFST 187
Query: 229 VK--PPCSFTQ-EETEYLTNRIQNGGTEVV 255
           +   P   F   +    +  R + GG E+V
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 171 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 228
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFST 187
Query: 229 VK--PPCSFTQ-EETEYLTNRIQNGGTEVV 255
           +   P   F   +    +  R + GG E+V
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 171 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 228
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFSC 187
Query: 229 VK--PPCSFTQ-EETEYLTNRIQNGGTEVV 255
           +   P   F   +    +  R + GG E+V
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D+V+I AG+PRKPGMTR+DL ++NAGIVR +   I +   N  + ++SNP++    +A  
Sbjct: 71  DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLDIMTHVA-- 128
Query: 171 VFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXH--AGVTILPLL 226
            ++K+G   PK +++G+  +LD  R  +F+A                 H  A V ++   
Sbjct: 129 -WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGHGDAMVPVVKYT 185
Query: 227 SQVKPPCS--FTQEETEYLTNRIQNGGTEVV 255
           +    P +   + E    L  R + GG E+V
Sbjct: 186 TVAGIPVADLISAERIAELVERTRTGGAEIV 216

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +    F K    DP+K+ G  T+LD  R  T +A+
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQ 155

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 36/250 (14%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRG--FL 98
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H        G  F+
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLPFM 59
Query: 99  GQPQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 154
           GQ  L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  +
Sbjct: 60  GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 119
Query: 155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 213
            ++SNPV+    I   + +K       K++G  T+LD +R    ++E             
Sbjct: 120 LVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYI 175
Query: 214 XXXHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
              H G + LPL S               P C+FT+E+ + +   ++  G  +++ K GA
Sbjct: 176 IGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK-GA 233
Query: 262 GSATLSMRLN 271
               +++ +N
Sbjct: 234 TYYGIAVSIN 243

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTGAVVRGFLG 99
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAE 200
           P++    +    F+K       K+ G+  +LD  R  TF+A+
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQ 160

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTGAVVRGFLG 99
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHA 218
           P++    +    F+K       K+ G+  +LD  R  TF+A+                H 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 219 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 256
           G  ++P  S V     P  SF      TQE+ + +    +    EV +
Sbjct: 178 GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 20/233 (8%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADISHMDTGAVVRGFL 98
           KV I+GA+G +G   A+L+   P +  L L    + +    G+  DI     G      +
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 99  GQPQLEN--ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                EN   +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C +  + +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFV 120
Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXX 215
           I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+               
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIG 176
Query: 216 XHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
            H G +++PLLS        ++    F +   + +   ++  G +++  K G+
Sbjct: 177 EH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 171 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPL---- 225
               A  +   +++G+  +LD  R  +F+AE                H G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 226 -LSQVKPPCSFTQEETEYLTNRIQNGGTEVVE 256
            +  +  P        E +  R +  G E+V+
Sbjct: 186 TVGGIPVPQLIDDARIEEIVERTKGAGGEIVD 217

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTGAVVRGFLG- 99
           K+ I+GAAG IG  +A    +  L   L LYD   V   GV  +I H        GF G 
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-------GFEGL 62
Query: 100 ----QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-V 154
                  ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V
Sbjct: 63  NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHV 122
Query: 155 NLISNPVNST 164
            +I NP + T
Sbjct: 123 IIIFNPADIT 132

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 15/223 (6%)
Query: 44  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM--DTGAVVRGFLGQ 100
           + ILGA G +G   A+++ +     +L +      P G   D++H   + G  +R   G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGS 59
Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
              E+ + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +NP
Sbjct: 60  NSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118
Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 219
           V++   +   ++KK G +  ++++G + +LD  R   ++++                H  
Sbjct: 119 VDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQ 174
Query: 220 VTI-LPLLSQVKP-PCS--FTQEETEYLTNRIQNGGTEVVEAK 258
               +P LS V   P     ++EE E + +   N G ++ E +
Sbjct: 175 KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR 217

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 26/240 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 214
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 215 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 26/240 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXX 214
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 215 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 12/140 (8%)
Query: 42  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 101
            K+  +GA G +G   A    +N  V  + L D+     V      MD      G    P
Sbjct: 1   MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG---EAMDLAHAAAGIDKYP 56
Query: 102 QL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
           ++      + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +
Sbjct: 57  KIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116
Query: 157 ISNPVNSTVPIAAEVFKKAG 176
           ++NP++    I   ++K++G
Sbjct: 117 VTNPMDVMTYI---MWKESG 133

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 200
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 165

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 200
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 165

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 200
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 165

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 200
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 164

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 200
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 164

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 26/229 (11%)
Query: 46  ILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQPQL 103
           +L  +G IG  +A L+    L  V+ ++DVV N P G   D SH +  A     +     
Sbjct: 7   VLVGSGMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNCKVTGSNS 65
Query: 104 ENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158
            + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I   CPNA + +++
Sbjct: 66  YDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVT 125
Query: 159 NPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXX 216
           NPV+  V +   +F+ +G   PK K++G+  +LD  R   ++++                
Sbjct: 126 NPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGA 180
Query: 217 HAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVV 255
           H    +L          PL   +      T EE E + +R  N   E+V
Sbjct: 181 HGNKMVLLKRYITVGGIPLQEFINNK-KITDEEVEGIFDRTVNTALEIV 228

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 30  QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD 89
           +A+ +  G  +  KVA+ GAAG IG  L  L+    L+           P    ++  +D
Sbjct: 13  EAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLG----------PTTPVELRLLD 62
Query: 90  TGAVVRGFLG-QPQLEN-----------------ALTGMDLVIIPAGVPRKPGMTRDDLF 131
               ++   G + +LE+                 A  G+ + I+    PRK GM R DL 
Sbjct: 63  IEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLL 122
Query: 132 NINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGVTML 189
            +NA I +   E IA     +  V ++ NP N+   I   + K A G  +P+ +  +T L
Sbjct: 123 EMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRL 179
Query: 190 DVVRANTFVA 199
           D  RA + +A
Sbjct: 180 DHNRALSLLA 189

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L G D+VI+ AG  + PG       R DL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 200
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 165

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 250 GGTEVVEAK 258
              +V+E K
Sbjct: 210 SAMDVIERK 218

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 250 GGTEVVEAK 258
              +V+E K
Sbjct: 210 SAMDVIERK 218

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 250 GGTEVVEAK 258
              +V+E K
Sbjct: 211 SAMDVIERK 219

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 250 GGTEVVEAK 258
              +V+E K
Sbjct: 211 SAMDVIERK 219

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 77  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 133
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 134 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 192
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 193 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 249
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 250 GGTEVVEAK 258
              +V+E K
Sbjct: 210 SAMDVIERK 218

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 101 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
               + L   D+VI+ AG  + PG       RDDL  +N  I+  +   I   CPNA + 
Sbjct: 64  SNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFII 123
Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 200
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIVGLGGVLDTSRLKYYISQ 165

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 167 IAAEV 171
           +A ++
Sbjct: 125 LATQL 129

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 91
           +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P 150
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 151 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 200
           +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 91
           +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P 150
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 151 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 200
           +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 91
           +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P 150
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 151 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 200
           +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--- 99
           K+A++GA G +G  LA       +   + L D+     V A++  M  G+     +    
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKE-RVEAEVLDMQHGSSFYPTVSIDG 66
Query: 100 --QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
              P++       D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI
Sbjct: 67  SDDPEI---CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 123
Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +NPV+    IA  V +K       ++ G  T LD  R    +A+
Sbjct: 124 TNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQ 163

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 228
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 229 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL 270
                    V+      Q++ E +   +++   +++E K GA    ++M L
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGL 241

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 228
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 229 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL 270
                    V+      Q++ E +   +++   +++E K GA    ++M L
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGL 241

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 101 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 101 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 171 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ 228
              K   +   +++G  T LD  R    +AE                H G T  P+ S 
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSH 191

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD 129

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 43  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA--V 93
           +VA+ GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNA 152
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+    + 
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 200
            V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170
           DLV+I AG P++PG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 171 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
              K   +   +++G  T LD  R    +AE
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAE 163

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 26/244 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 103 LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 217
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH 178
Query: 218 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 267 SMRL 270
           +M L
Sbjct: 237 AMSL 240

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 26/244 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 103 LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 217
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH 178
Query: 218 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 267 SMRL 270
           +M L
Sbjct: 237 AMSL 240

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 166
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 167 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200
           +A   +  +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YALSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQH---GSL---FLRT 74
Query: 101 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++      N      LV+I AG  ++ G +R +L   N  I + +   I K  PN  + 
Sbjct: 75  PKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLL 134
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 135 VVSNPVDILTYVAWKI 150

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 20/139 (14%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQH---GSL---FLRT 73
Query: 101 PQLENALTGMD--------LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152
           P++   ++G D        LVII AG  ++ G +R +L   N  I + +   + K  P+ 
Sbjct: 74  PKI---VSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHC 130
Query: 153 TVNLISNPVNSTVPIAAEV 171
            + ++SNPV+    +A ++
Sbjct: 131 KLLVVSNPVDILTYVAWKI 149

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73
Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 74
Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 75  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 134
Query: 156 LISNPVNSTVPIAAEV 171
           ++SNPV+    +A ++
Sbjct: 135 IVSNPVDILTYVAWKI 150

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTGAVVRG 96
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 23  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                +  +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+  + +
Sbjct: 82  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 157 ISNPVNSTVPIAAEV 171
           +SNPV+    +A ++
Sbjct: 137 VSNPVDVLTYVAWKL 151

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTGAVVRG 96
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
                +  +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+  + +
Sbjct: 81  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 157 ISNPVNSTVPIAAEV 171
           +SNPV+    +A ++
Sbjct: 136 VSNPVDVLTYVAWKL 150

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           K+ ++G  G +G   A+ + +  L   L L D  +T  +  +   +  G++   FL  P+
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDA-DTDKLRGEALDLQHGSL---FLSTPK 75
Query: 103 L-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
           +      N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + ++
Sbjct: 76  IVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVV 135
Query: 158 SNPVN 162
           +NPV+
Sbjct: 136 TNPVD 140

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 120 PRKPGMTRDDLFNINAGIVRTLCEGI-AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 178
           PR PGM R DL +IN  I     + + A   PN  V ++ NP N+   I     K A   
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 179 DPKKLLGVTMLDVVRANTFVA 199
            PK    +T LD  RA   +A
Sbjct: 186 PPKNFHALTRLDENRAKCQLA 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-141
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-137
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-130
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	9e-41
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	1e-38
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	9e-38
3tl2_A	315	Malate dehydrogenase; center for structural genomi	3e-37
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	7e-37
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	9e-37
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-36
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	2e-36
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	2e-36
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	3e-36
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	5e-36
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	2e-35
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	1e-34
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	1e-33
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	3e-33
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	7e-33
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	8e-33
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	1e-32
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	1e-32
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	1e-32
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	2e-32
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	2e-32
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	5e-32
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	1e-31
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	1e-31
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	1e-30
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-30
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-30
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	3e-30
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	4e-30
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	2e-29
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	3e-28
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	4e-26
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	3e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	2e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	4e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  398 bits (1025), Expect = e-141
 Identities = 219/235 (93%), Positives = 225/235 (95%)

Query: 34  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 93
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 153
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 154 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 213
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 214 VGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           VGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  388 bits (1000), Expect = e-137
 Identities = 148/226 (65%), Positives = 179/226 (79%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 163 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 222
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 223 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 227

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  371 bits (954), Expect = e-130
 Identities = 143/228 (62%), Positives = 171/228 (75%), Gaps = 4/228 (1%)

Query: 43  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 100
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 220
           VN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 221 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  143 bits (362), Expect = 9e-41
 Identities = 63/245 (25%), Positives = 97/245 (39%), Gaps = 26/245 (10%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 100
           K+ I+GAAG IG  +A    +  L   L LYD       GV  +I     G         
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEI--RHCGFEGLNLTFT 67

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISN 159
             ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 160 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218
           P + T  +       +G   P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 219 GVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG-----AGS 263
           G  +             L+ +      T E+   L  R+  GG  +++ +          
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQSPSY 242

Query: 264 ATLSM 268
            ++ M
Sbjct: 243 VSIEM 247

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  136 bits (345), Expect = 1e-38
 Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 28/235 (11%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHMDTGAVVRGFL 98
           KV+++GAAG +G      + +  +   +   D+ +    T    AD +H         + 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG------IAYD 55

Query: 99  GQPQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 154
              ++         G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +   
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 155 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPV 213
              SNPV+    +      +AG    ++++G    LD  R    ++E      ++V+  +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 214 VGGHAGVTILPLLSQV----KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           +G H G   +P+ S+V      P  F+ +E E L   +Q    +V+E K   G+ 
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDP-EFSGDEKEQLLGDLQESAMDVIERK---GAT 221

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  134 bits (339), Expect = 9e-38
 Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 30/247 (12%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGF- 97
           KV I+GA+G +G   A+L+   P +  L L    +      G+  DI             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD---ALAGTRSD 58

Query: 98  ----LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 153
               +   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    
Sbjct: 59  ANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK- 117

Query: 154 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP 212
           + +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   +V   
Sbjct: 118 IFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTR 173

Query: 213 VVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA---- 261
           ++G H G +++PLLS        ++    F +   + +   ++  G +++  K G+    
Sbjct: 174 IIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGP 232

Query: 262 GSATLSM 268
            +A L++
Sbjct: 233 AAAILNV 239

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  133 bits (336), Expect = 3e-37
 Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMDTGAVVRGFL 98
           KV+++GA G  G   A L+    L  V+ L D+      T     D+      + V+GF 
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLE---ASPVQGFD 64

Query: 99  GQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
                 +        D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + 
Sbjct: 65  ANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           +++NPV+           K   +  ++++G   +LD  R  TF+A+ L L  +D+   V+
Sbjct: 125 VLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL 180

Query: 215 GGHAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           GGH G  ++PL+        P  +   +E  E +  R + GG E+V    G GSA
Sbjct: 181 GGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSA 233

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  131 bits (333), Expect = 7e-37
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 20/227 (8%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV ++GA G +G  +A  +    +   + + D+ +    G   D+      + + GF  +
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRE---SSPIHGFDTR 57

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N        D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ ++
Sbjct: 58  VTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVV 117

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++    +   V  +A  +   +++G+  +LD  R  +F+AE L +  RDV   ++GG
Sbjct: 118 ANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGG 173

Query: 217 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAK 258
           H G T++PL         P          E +  R +  G E+V+  
Sbjct: 174 H-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM 219

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  131 bits (332), Expect = 9e-37
 Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 21/233 (9%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++GA G +G   A  +    L   L L DVV     G   D+        V  F  +
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYE---SGPVGLFDTK 57

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N        D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++
Sbjct: 58  VTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           SNP++    I   V         ++++G+  +LD  R  +F+A  LG+  +D++  V+GG
Sbjct: 118 SNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG 173

Query: 217 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G  ++P++        P       E  + L  R +NGG E+VE     GSA
Sbjct: 174 H-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSA 224

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  131 bits (332), Expect = 1e-36
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 22/233 (9%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K++I+GA G +G   A  +    L  ++ L D+V     G   D+      + + GF  +
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYE---ASPIEGFDVR 58

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N        D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + ++
Sbjct: 59  VTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV 118

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++        +  +   +  ++++G   +LD  R  TF+A   G+   DV   ++GG
Sbjct: 119 NNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGG 174

Query: 217 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G  ++PL         P   F   +    +  R + GG E+V      GSA
Sbjct: 175 H-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSA 225

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  131 bits (331), Expect = 2e-36
 Identities = 81/238 (34%), Positives = 121/238 (50%), Gaps = 27/238 (11%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+        + G   +
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQ---TCPIEGVDFK 61

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
            +  N    L   D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CPNA V  I
Sbjct: 62  VRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI 121

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++    I   + +K       K++G+  +LD  R  TF+A+ L +  + V   V+GG
Sbjct: 122 TNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGG 177

Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G T++PL          L Q+       QE  + + +R ++GG E+V      GSA
Sbjct: 178 H-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSA 233

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  130 bits (330), Expect = 2e-36
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 26/241 (10%)

Query: 44  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQP 101
           + ILGA G +G   A+++ +     +L L         G   D++H    A   G   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAH---AAAELGVDIRI 56

Query: 102 QLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158
              N    + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +
Sbjct: 57  SGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116

Query: 159 NPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH 217
           NPV+        V  K   +  ++++G   +LD  R   ++++ LG+  + V+  V+G H
Sbjct: 117 NPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH 172

Query: 218 AGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGA-----GSATLS 267
            G  + P+         P     ++EE E + +   N G ++ E +  +      +  + 
Sbjct: 173 -GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVL 231

Query: 268 M 268
            
Sbjct: 232 T 232

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  130 bits (330), Expect = 3e-36
 Identities = 80/238 (33%), Positives = 115/238 (48%), Gaps = 27/238 (11%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K++I+GA G IG  +A+L+    L  V  ++D++     G   D++H      + G   +
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNH---CMALIGSPAK 70

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
              EN    L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  I
Sbjct: 71  IFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI 130

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++         FK+       K+ G+  +LD  R    ++  LG+ P DV   VVGG
Sbjct: 131 TNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGG 186

Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G  ++PL          LS        T  +   +  +   GG E+VE     GSA
Sbjct: 187 H-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSA 242

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  129 bits (328), Expect = 5e-36
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 27/238 (11%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H     V+ G   +
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITH---SMVMFGSTSK 60

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               +    ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I
Sbjct: 61  VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICI 120

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++    +    F+K       K+ G+  +LD  R  TF+A+  G++  DV   V+GG
Sbjct: 121 TNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176

Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G  ++P           LS        TQE+ + +    +    EV +     G+A
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTA 232

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  128 bits (324), Expect = 2e-35
 Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 27/238 (11%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+     + V GF  +
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPVDGFDAK 63

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
               N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P A V  I
Sbjct: 64  FTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI 123

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 216
           +NP++          +K       K++G+  +LD  R   F++E   +   DV V V+GG
Sbjct: 124 TNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGG 179

Query: 217 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           H G +++PL          L  +      +Q++ + +  R ++GG E+V      GSA
Sbjct: 180 H-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSA 235

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  126 bits (319), Expect = 1e-34
 Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 33/244 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--- 97
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH      V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSH---VTSVVDTNVS 65

Query: 98  -LGQPQLENALTGMDLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPN 151
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 210
             + +++NP++       +V  +A       + G+  MLD  R   +VA+ L + PRDV 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 211 VPVVGGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAG 260
             V+G H G  ++PL+  +                T+++ E +    +  G E+V    G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239

Query: 261 AGSA 264
            GSA
Sbjct: 240 QGSA 243

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  123 bits (312), Expect = 1e-33
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 34/243 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH     V+     +
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSH---TNVMAYSNCK 60

Query: 101 PQLEN---ALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 152
               N    L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 61  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120

Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 211
            + +++NPV+    +  ++  +       K++G+  +LD  R   ++++ L + PRDV+ 
Sbjct: 121 FIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176

Query: 212 PVVGGHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
            +VG H G  ++ L          L +       +  E E + +R  N   E+V      
Sbjct: 177 HIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH--- 232

Query: 262 GSA 264
            S 
Sbjct: 233 ASP 235

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  122 bits (308), Expect = 3e-33
 Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 29/234 (12%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           +V ++GA G +G      +    +   + L D       G   D +H   G V   F  +
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH---GKV---FAPK 60

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P              DLV+I AG  +KPG TR DL + N  I R++ E +          
Sbjct: 61  PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           + +NPV+    I      K      ++++G  T+LD  R    + E   + P++V   ++
Sbjct: 121 VATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII 176

Query: 215 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
           G H        +   I  +P+   V+      Q++ E +   +++   +++E K
Sbjct: 177 GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK 230

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  121 bits (307), Expect = 7e-33
 Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 32/240 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KVA++GA G +G   A  +    +   L + DV      G   D++H   G     F  Q
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNH---GKA---FAPQ 59

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P   +          D+V I AG  +KPG TR +L   N  I + +   +     +    
Sbjct: 60  PVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFL 119

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           + +NPV+    I      K      ++++G  T LD  R    ++E  G  P++V   ++
Sbjct: 120 VATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII 175

Query: 215 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           G H        +   +  +P+   V+   ++ QEE + + + ++N    ++E K   G+ 
Sbjct: 176 GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GAT 232

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  121 bits (306), Expect = 8e-33
 Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 32/246 (13%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 91
           +V + GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 92  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 150
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 151 NAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 209
            +  V ++ NP N+    A+   K A +   +    +T LD  RA   +A  LG+   DV
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 210 DVPVVGGHAGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
              ++ G+   T  P ++            V                 +Q  G  V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 259 AGAGSA 264
               SA
Sbjct: 238 -KLSSA 242

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  121 bits (305), Expect = 1e-32
 Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 31/239 (12%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ I+G  G +G   A  + +      + L DV      G   D+ H   G     F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH---GTP---FTRR 54

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             +       L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
           ++NPV+    +    F K    DP+K+ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 216 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
            H        +G  I  +PL +  +       +  E    + +    E++E K   G+ 
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GAT 226

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  121 bits (305), Expect = 1e-32
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 31/239 (12%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         F   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN---ALP---FTSP 63

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
            ++     +     DLV+I AG P+KPG TR DL N N  I++++ + I     N    +
Sbjct: 64  KKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
            +NPV+    I      K   +   +++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 216 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
            H        +   I  + +   VK      +++   +   +++   E+++ K   G+ 
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GAT 235

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  120 bits (304), Expect = 1e-32
 Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 32/239 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV ++G  G +G   A  M    +     + DVV   T G   D+           F   
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED---AQA---FTAP 59

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
            ++     +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
            +NPV+    I      K   +  ++++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 216 GHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
            H G +     S                  + ++   L + ++N   +++  K   G+ 
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GAT 230

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  120 bits (304), Expect = 2e-32
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 33/240 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H         +   
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATP------YSPT 60

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
                A         DLV+I AG  +KPG TR DL + N  I +++   +     +    
Sbjct: 61  TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL 120

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           + +NPV+    I A    K      ++++G  T+LD  R    ++E   + PR VD  ++
Sbjct: 121 VATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176

Query: 215 GGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           G H G T LP+ S                   + + E +  + ++   ++++AK   G+ 
Sbjct: 177 GEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GAT 232

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  120 bits (303), Expect = 2e-32
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 36/243 (14%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+A++GA G +G  LA       +   + L D+          D+ H   G+    F   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQH---GSS---FYPT 61

Query: 101 PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
             ++           D+V+I AG  +KPG +R +L      I++ +   + K  PNA   
Sbjct: 62  VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           LI+NPV+    IA  V +K       ++ G  T LD  R    +A+  G++ ++V   + 
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177

Query: 215 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 261
           G H              GV +               ++ E +   ++N   +++  K   
Sbjct: 178 GEHGDSEVPLWESATIGGVPMSDWTPLPGHDP-LDADKREEIHQEVKNAAYKIINGK--- 233

Query: 262 GSA 264
           G+ 
Sbjct: 234 GAT 236

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  119 bits (301), Expect = 5e-32
 Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 36/242 (14%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H   G     F+GQ
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH---GLP---FMGQ 61

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
           +SNPV+    I   + +K       K++G  T+LD +R    ++E LG+D ++V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 216 GH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 262
            H             AG  I   +   K    FT+E+ + +   ++  G  +++ K   G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCN--FTEEDKKKIAEDVKTAGATIIKNK---G 232

Query: 263 SA 264
           + 
Sbjct: 233 AT 234

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  118 bits (298), Expect = 1e-31
 Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 31/235 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           KV I+G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
            +NPV+    +  +V        P +++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 216 GHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
            H G + + + S                  + + E+   +   ++     ++E K
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK 224

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  118 bits (299), Expect = 1e-31
 Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 32/236 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           ++SNPV+    I   V  K   +   +++G    LD  R    + E LG+ P      V+
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189

Query: 215 GGHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
           G H G + +P+ S V            +      +E+ + +  ++ +   EV++ K
Sbjct: 190 GEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK 244

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  115 bits (291), Expect = 1e-30
 Identities = 60/244 (24%), Positives = 91/244 (37%), Gaps = 30/244 (12%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 89
           +VA+ GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 90  TGA-VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 148
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 149 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPR 207
              N  V ++ NP N+   IA    K A +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 208 DVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 260
            ++   V G+   T+             VK   +      +     +   G  +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238

Query: 261 AGSA 264
             SA
Sbjct: 239 VSSA 242

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  114 bits (289), Expect = 1e-30
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 27/230 (11%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    A        
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH---AAAGIDK--Y 55

Query: 101 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
           P++        L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + 
Sbjct: 56  PKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKIL 115

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           +++NP++    +   +  K       ++ G+   LD  R    +      + R     ++
Sbjct: 116 VVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRRAW--II 169

Query: 215 GGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264
           G H G ++    S         + + E + N ++    EV++ K   G+ 
Sbjct: 170 GEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GAT 212

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  114 bits (289), Expect = 2e-30
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 20/218 (9%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQP 101
           K+ ++G  G +G    + +    +   L L D+   T G T D+   +   V        
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS----- 69

Query: 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161
           +  +A     +VI           +  D+   N  + R L   +     ++ + + S P 
Sbjct: 70  KDLSASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127

Query: 162 NSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 220
              V I   V  K  T+   +++G+   LD  R    +  VL       +V V+G   G 
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183

Query: 221 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
             +   S  +         +     ++ N   E++  K
Sbjct: 184 DKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK 215

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  114 bits (288), Expect = 3e-30
 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 20/195 (10%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++G    +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEH---GSL---FLHT 75

Query: 101 PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
            ++      +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+    
Sbjct: 76  AKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKE 135

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
           L             +   K       +++G    LD  R    + E LG+    V   V+
Sbjct: 136 LHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI 191

Query: 215 GGHAGVTILPLLSQV 229
           G H G ++  + S +
Sbjct: 192 GQH-GDSVPSVWSGM 205

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  114 bits (287), Expect = 4e-30
 Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 25/240 (10%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----G 91
           +VA+ GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62

Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 151
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 152 AT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD 210
              V ++ NP N+   IA    K A   +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 211 VPVVGGHAGVTILPLLSQV----KPPCSFTQEE--TEYLTNRIQNGGTEVVEAKAGAGSA 264
              V G+   T+ P L       +P       E   +     +   G  +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  113 bits (284), Expect = 2e-29
 Identities = 55/242 (22%), Positives = 85/242 (35%), Gaps = 28/242 (11%)

Query: 43  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 91
            +A+ GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 92  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 150
              +R              +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 151 -NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 209
            N  V ++ NP N+   I     K A     K    +T LD  RA   +A   G+    V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 210 DVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 262
               + G+   T +P           VK     T+   E  T  +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265

Query: 263 SA 264
           SA
Sbjct: 266 SA 267

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  108 bits (273), Expect = 3e-28
 Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 37/237 (15%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           KV ++G  G +G   A  + +    S L L D           DI+H             
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA------APVSHG 54

Query: 101 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
            ++     + L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + +
Sbjct: 55  TRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV 114

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 214
            SNPV+    +  ++  +     P   ++G  T+LD  R    +A+  G+D       V+
Sbjct: 115 TSNPVD----LLTDLATQ---LAPGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 215 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 258
           G H             AG+ +   +     P  + ++    +    +N    ++E K
Sbjct: 168 GEHGDSEVLAWSSAMVAGMPVADFMQAQNLP--WNEQVRAKIDEGTRNAAASIIEGK 222

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  103 bits (259), Expect = 4e-26
 Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 31/235 (13%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ I+G  G +G  +A  +    +       D           D             L  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDA------MANLEA 55

Query: 101 PQLENA-----LTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPN 151
                      L   D+VI   G  +     P   R       + +V+++   + +   +
Sbjct: 56  HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115

Query: 152 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 210
             + +ISNPV+    +   +F+    +   K++G  T+LD  R    V E   LDPR V 
Sbjct: 116 GVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVS 171

Query: 211 VPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN---RIQNGGTEVVEAK 258
              +G H G +     S V    +P  +        L       + GG  V+  K
Sbjct: 172 GYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK 225

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.0 bits (126), Expect = 3e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 40  AGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTG 91
              K+ I+GA G        ++ L K   L  S + L D+    ++     A     + G
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 140
           A ++ F     L++ +   D VI  A V     + +        G  R            
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 141 ---------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
                          +   I K  P A     +NP+         +  +     P K +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTV---PIKAVG 172

Query: 186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG 215
                       + E LGL+   VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 40  AGFKVAILGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVR 95
              K+A +G  G  G     ++ L     +   + LYD+          I +       R
Sbjct: 4   DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR 62

Query: 96  GFLGQPQLENALTGMDLVIIPAGV------------PRKPGMTRDDLFNINAG------- 136
            +     L+ AL+  D+VII                P + G+ +     +  G       
Sbjct: 63  -YEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLR 121

Query: 137 ---IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR 193
              I   +   I    P + V   +NP++    +  +VF           +  T   +  
Sbjct: 122 AVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAE 181

Query: 194 ANTFVAEVLGLDPRDVDVPVVGGH 217
             T    +      D+ V V+G +
Sbjct: 182 MVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 42/251 (16%)

Query: 29  RQAKCRAKGGAAGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPG 80
                ++      F + I G  G    P   L +L  +    +  L LYD      +   
Sbjct: 16  ENLYFQSNMKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA 74

Query: 81  VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 140
              D+   +    +  F      E A T +D V+    V +      D+   +  G+V  
Sbjct: 75  GACDVFIREKAPDIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQ 133

Query: 141 --------------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 180
                               + + + K  P+A +   SNP          +         
Sbjct: 134 ETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN------ 187

Query: 181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
            K+L +  +  V     +A++LGL  R     +   + G+      + ++       +  
Sbjct: 188 SKILNICDM-PVGIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQDQE--GNDLM 241

Query: 241 EYLTNRIQNGG 251
             L   +   G
Sbjct: 242 PKLKEHVSQYG 252

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 37/204 (18%)

Query: 41  GFKVAILGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTG 91
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 92  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 140
            V            AL G D V     V       +D+   +  G++             
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 141 ---------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 191
                    +   + + CP+A +   +NP            K+      +K++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ------EKVVGLCNV-P 178

Query: 192 VRANTFVAEVLGLDPRDVDVPVVG 215
           +     VA++LG+D   V +   G
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAG 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 49/253 (19%), Positives = 76/253 (30%), Gaps = 82/253 (32%)

Query: 11  IARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVL 70
           ++R+  +L    L+   L + +  AK       V I G   G G       K     + +
Sbjct: 131 VSRLQPYL---KLRQ-ALLELR-PAKN------VLIDGV-LGSG-------K-----TWV 166

Query: 71  HLYDVVNTPGVTADISHMDTGAVVRGF---LGQPQLENALTGM--DL--VIIPAGVPRKP 123
            L DV  +  V      MD       F   L        +  M   L   I P    R  
Sbjct: 167 AL-DVCLSYKV---QCKMDFKI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 124 GM--TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181
                +  + +I A + R L     K   N    L+   V +     A+ +     ++  
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKS---KPYENCL--LVLLNVQN-----AKAWN---AFNLS 265

Query: 182 -KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 240
            K+L +T        T          R   V      A  T + L        + T +E 
Sbjct: 266 CKIL-LT--------T----------RFKQVTDFLSAATTTHISL---DHHSMTLTPDEV 303

Query: 241 E-----YLTNRIQ 248
           +     YL  R Q
Sbjct: 304 KSLLLKYLDCRPQ 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	99.97
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.93
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.92
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.92
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.89
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.81
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.8
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.76
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.75
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.68
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.66
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.63
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.62
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.62
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.6
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.6
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.58
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.56
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.55
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.55
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.55
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.52
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.52
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.52
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.49
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.49
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.49
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.49
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.49
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.49
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.48
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.47
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.47
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.47
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.47
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.46
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.45
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.45
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.45
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.45
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.44
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.44
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.44
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.44
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.43
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.43
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.43
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.41
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.4
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.4
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.38
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.38
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.37
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.37
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.36
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.35
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.34
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.33
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.32
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.32
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.31
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.31
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.31
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.3
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.29
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.29
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.28
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.27
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.27
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.26
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.26
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.26
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.26
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.25
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.24
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.23
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.22
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.22
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.21
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.21
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.21
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.18
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.18
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.18
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.18
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.18
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.18
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.16
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.16
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.16
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.16
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.15
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.15
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.15
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.14
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.14
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.13
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.12
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.12
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.12
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.11
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.11
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.09
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.08
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.06
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.06
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.05
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	98.05
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.03
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	98.03
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.02
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.01
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.01
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.01
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.0
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.0
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.99
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.99
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.98
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.98
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.97
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.97
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.96
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.96
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.95
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.95
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.94
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.94
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.93
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.93
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.93
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.93
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.92
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.92
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.91
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.91
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.89
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.89
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.89
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.88
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.87
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.87
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.87
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.86
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.86
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.86
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.85
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.85
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.85
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.84
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.84
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.84
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.84
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.83
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.83
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.83
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.82
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.82
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.82
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.82
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.81
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.81
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.81
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.81
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.81
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.8
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.8
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.8
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.79
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.79
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.79
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.79
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.79
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.78
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.78
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.78
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.77
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.77
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.76
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.76
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.76
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.75
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.75
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.74
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.73
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.72
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.72
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.71
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.71
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.71
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.71
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.7
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.7
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.7
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.7
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.7
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.7
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.7
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.7
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.69
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.69
1spx_A	278	Short-chain reductase family member (5L265); paral	97.69
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.69
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.69
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.69
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.69
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.68
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.68
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.68
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.68
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.67
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.67
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.66
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.66
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.66
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.65
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.65
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.64
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.64
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.64
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.64
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.64
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.64
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.64
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.63
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.63
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.63
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.63
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.63
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.63
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.62
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.62
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.61
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.61
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.61
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.6
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.6
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.6
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.6
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.6
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.6
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.6
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.59
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.59
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.59
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.59
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.58
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.58
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.58
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.57
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.57
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.57
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.57
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.57
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.57
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.56
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.56
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.56
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.55
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.55
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.55
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.54
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.54
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.54
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.54
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.54
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.54
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.54
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.54
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.54
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.53
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.53
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.53
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.52
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.52
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.52
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.51
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.51
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.51
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.5
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.5
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.5
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.49
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.49
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.49
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.49
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.48
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.48
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.47
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.47
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.47
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.46
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.46
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.45
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.45
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.45
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.45
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.44
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.44
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.44
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.44
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.44
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.43
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.42
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.42
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.41
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.41
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.41
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.41
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.4
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.4
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.4
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.39
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.39
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.39
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.38
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.37
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.37
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.37
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.37
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.37
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.36
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.36
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.36
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.35
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.35
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.35
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.34
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.34
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.33
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.33
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.33
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.33
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.33
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.31
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.31
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.31
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.31
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.31
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.31
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.3
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.3
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.29
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.29
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.29
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.28
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.26
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.26
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.25
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.25
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.24
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.23
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.23
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.23
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.22
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.22
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.2
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.19
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.19
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.19
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.18
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.18
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.18
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.17
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.16
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.14
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.13
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.13
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.18
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.11
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.1
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.1
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.08
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.08
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.08
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.07
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.07
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.05
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.05
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.05
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.02
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.02
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.99
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.97
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.96
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.96
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.96
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.95
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.95
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.94
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.93
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.93
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.92
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.91
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.89
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.89
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.88
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.87
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.86
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.85
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.84
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.83
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.83
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.81
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.8
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.79
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.79
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.77
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.77
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.75
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.75
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.72
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.72
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.71
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.71
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.69
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.69
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.68
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.66
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.65
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.65
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.64
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.63
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.63
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.62
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.61
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.61
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.61
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.59
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.59
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.58
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.57
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.57
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.56
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.54
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.5
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.48
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.46
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.45
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.45
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.44
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.44
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.43
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.42
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.41
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.4
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.4
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.39
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.36
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.34
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.34
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.34
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.33
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.3
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.3
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.29
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.25
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.24

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=5.1e-54  Score=395.59  Aligned_cols=232  Identities=59%  Similarity=0.909  Sum_probs=209.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |||+||||+|.||+++++.|+++ ++.+||+|+|+++ +.|+++||.|......+..+.++ +.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~-~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE-DATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSS-CCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCC-CcHHHhCCCCEEEEeCCC
Confidence            69999997799999999999887 7888999999997 77999999998643455544322 346899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCC-CCCCeeeecchhHHHHHHHH
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY-DPKKLLGVTMLDVVRANTFV  198 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~-~~~kViG~t~lds~R~~~~l  198 (279)
                      |+++||+|.|++..|+++++++++.|.++||+++++++|||+|++|++++++++ .+|+ |++||+|+|.||++|++++|
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k-~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLK-KAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHH-HTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHH-HcCCCCcceEEEEechhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998766554 5676 99999999999999999999


Q ss_pred             HHHcCCCCCCCcceeecCC-CCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          199 AEVLGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       199 a~~l~v~~~~V~~~ViGeh-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      |+++|++|++|+++||||| |+ |+||+||++ .+.++++++|++|.++|+++|++|++.|.|+||++||+|+|++++++
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~-t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~  236 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGV-TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGL  236 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGG-GEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhHcceeEEeccCCC-ceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHH
Confidence            9999999999999999999 65 999999998 33468888999999999999999999988889999999999999975

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=1.5e-53  Score=395.12  Aligned_cols=229  Identities=23%  Similarity=0.360  Sum_probs=204.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      .+.+||+|||| |.||+++++.|+.+++++||+|+|+++  ++|.++||.|...+........++|+ ++++|||+||++
T Consensus        17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence            55789999998 999999999999999999999999987  68999999998532211111124575 689999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~  195 (279)
                      +|.|+++||+|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~----~k~sg~p~~rviG~gt~LD~~R~~  170 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA----WKISGFPKNRVIGSGCNLDSARFR  170 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHHhCCCHHHEEeeccccHHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    67789999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC------------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCc
Q 023671          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (279)
Q Consensus       196 ~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs  263 (279)
                      +++|+++|++|++|+++||||||+ ++||+||++++++            .+++++|++|.++|+++|++|+++|   |+
T Consensus       171 ~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---g~  246 (331)
T 4aj2_A          171 YLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GY  246 (331)
T ss_dssp             HHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHH---SS
T ss_pred             HHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcC---CC
Confidence            999999999999999999999999 9999999998753            1346679999999999999999976   67


Q ss_pred             chHHHHHHHHHHHh
Q 023671          264 ATLSMRLNLRMHAS  277 (279)
Q Consensus       264 ~~~s~A~a~~~~~~  277 (279)
                      ++||+|+|++++++
T Consensus       247 t~~a~a~a~a~~~~  260 (331)
T 4aj2_A          247 TSWAIGLSVADLAE  260 (331)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHH
Confidence            88999999999875

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=5.1e-53  Score=385.67  Aligned_cols=218  Identities=23%  Similarity=0.374  Sum_probs=197.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      |||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|...    .+++..   ++| +++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d-~~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCC-HHHhCCCCEEEE
Confidence            79999998 999999999999999999999999988  7899999999642    233333   346 578999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      +||.||+|||+|+|++..|++|+++++++|.++||+++++++|||+|+|||++    ++.+|+|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~----~k~sg~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSSCCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh----HHHcCCChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999999865    77899999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHH
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRM  274 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~  274 (279)
                      +++|++++++++.  +++||||||+ |++|+||++++.+.   .+++++.++++++|++|++.|   |+++||+|.++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g~---~~~~~i~~~~~~~g~eIi~~k---Gst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEESC---CCHHHHHHHHHTHHHHHHHHH---SSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCCc---hhHHHHHHHHhhhheEEEecC---cccchhHHHHHHH
Confidence            9999999987664  6899999999 99999999998553   356789999999999999965   7899999999999


Q ss_pred             HHh
Q 023671          275 HAS  277 (279)
Q Consensus       275 ~~~  277 (279)
                      +++
T Consensus       223 ~~~  225 (294)
T 2x0j_A          223 MVK  225 (294)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=8.3e-52  Score=381.35  Aligned_cols=235  Identities=62%  Similarity=0.981  Sum_probs=217.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||+||||+|+||++++..|+..+++.||+|+|+++.++.++||.|.....+++.+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            59999998899999999999999988899999999878899999997644456654334577778999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHH
Q 023671          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  201 (279)
Q Consensus       122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~  201 (279)
                      ++|++|.|++..|+++++++++.|++++|+++++++|||+|++|+++++++++.+++|++||||+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998898999999999999999999999999999999


Q ss_pred             cCCCCCCCcceeecCC-CCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          202 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       202 l~v~~~~V~~~ViGeh-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +|++|++|+++||||| |+ +++|+||++++...+++++|+++.++++++|++|++.|.|+||++|++|.+++++++
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~  236 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVF  236 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHH
Confidence            9999999999999999 77 999999999865458888899999999999999999988889999999999999975

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.8e-52  Score=389.59  Aligned_cols=231  Identities=28%  Similarity=0.374  Sum_probs=200.9

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEE
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      .|++++||+||||+|+||+++++.++..+++.||+|+|+++  ++|.++||.|.... .++..   ++|++++++|||+|
T Consensus         4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvV   80 (343)
T 3fi9_A            4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYI   80 (343)
T ss_dssp             CCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEE
Confidence            46778899999977999999999999999888999999987  68999999997521 23443   35778899999999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCce-EEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHH
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV  192 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~-viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~  192 (279)
                      |+++|.|+++|++|.|++..|++++++++++|+++||+++ ++++|||+|++|+++    ++.+++|++||+|+|.||++
T Consensus        81 vitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~----~k~sg~p~~rv~g~t~LDs~  156 (343)
T 3fi9_A           81 VSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT----LIYSGLKPSQVTTLAGLDST  156 (343)
T ss_dssp             EECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH----HHHHTCCGGGEEEECCHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH----HHHcCCCcceEEEecCcHHH
Confidence            9999999999999999999999999999999999999996 899999999999876    56678999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhhhcCC
Q 023671          193 RANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGA  261 (279)
Q Consensus       193 R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~  261 (279)
                      ||++++|+++|++|++|+ ++||||||+ +++|+||++++++          .+++++|++|.++|+++|++|+++| | 
T Consensus       157 R~~~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g-  233 (343)
T 3fi9_A          157 RLQSELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G-  233 (343)
T ss_dssp             HHHHHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S-
T ss_pred             HHHHHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C-
Confidence            999999999999999997 899999998 9999999999864          1467789999999999999999988 3 


Q ss_pred             CcchHHHHHHHHHHHh
Q 023671          262 GSATLSMRLNLRMHAS  277 (279)
Q Consensus       262 gs~~~s~A~a~~~~~~  277 (279)
                      +++++|+|.|++++++
T Consensus       234 ~ss~~s~A~a~~~~~~  249 (343)
T 3fi9_A          234 RSSFQSPSYVSIEMIR  249 (343)
T ss_dssp             SCCCHHHHHHHHHHHH
T ss_pred             CCcHHhHHHHHHHHHH
Confidence            3567899999999876

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2.5e-52  Score=386.24  Aligned_cols=226  Identities=23%  Similarity=0.366  Sum_probs=188.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      .++||+|||| |.||+++++.|+..++++||+|+|+++  ++|.++||.|.... ..++...  ++ +++++|||+||++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~--~~-~~a~~~aDiVvi~   83 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS--AE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE--Cc-HHHhcCCCEEEEC
Confidence            4579999998 999999999999999999999999987  68999999997531 2344432  34 5889999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~  195 (279)
                      +|.|+++|++|.|++..|+++++++++.|+++||+++++++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~----~k~~g~p~~rviG~gt~LD~~R~~  159 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH----HHhcCCCHHHeeeecccCcHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    67789999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-CC----------CHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-SF----------TQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (279)
Q Consensus       196 ~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~~----------~~~~~~~i~~~v~~~~~~i~~~k~g~gs~  264 (279)
                      +++|+++|++|++|+++||||||+ |+||+||++++++ ++          +++++++|.++|+++|++|+++|   |++
T Consensus       160 ~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~t  235 (326)
T 3vku_A          160 QSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GAT  235 (326)
T ss_dssp             HHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---SCC
T ss_pred             HHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcC---CCc
Confidence            999999999999999999999998 9999999999864 11          56678999999999999999965   789


Q ss_pred             hHHHHHHHHHHHh
Q 023671          265 TLSMRLNLRMHAS  277 (279)
Q Consensus       265 ~~s~A~a~~~~~~  277 (279)
                      +||+|+|++++++
T Consensus       236 ~~a~a~a~~~~~~  248 (326)
T 3vku_A          236 FYGIATALARISK  248 (326)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999999986

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=4.1e-52  Score=383.25  Aligned_cols=224  Identities=27%  Similarity=0.464  Sum_probs=197.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      |||+|||| |.||+++++.|+++++++||+|+|+++  ++|+++||+|...    ..++..   +++ +++++|||+||+
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~---~~~-~~a~~~aDvVii   75 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG---TND-YGPTEDSDVCII   75 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEE---ESS-SGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEE---CCC-HHHhCCCCEEEE
Confidence            69999998 999999999999999999999999988  6899999999742    223432   234 689999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-chhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~lds~R~  194 (279)
                      ++|.|+++|++|.|++..|+++++++++.|.++||+++++++|||+|++|+++    ++.+++|++||||+| .||++|+
T Consensus        76 ~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~~g~p~~rviG~~t~LD~~R~  151 (314)
T 3nep_X           76 TAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA----YEASGFPTNRVMGMAGVLDTGRF  151 (314)
T ss_dssp             CCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH----HHHHTCCGGGEEECCHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH----HHhcCCChHHEEeecCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999875    566799999999995 9999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHH
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR  269 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A  269 (279)
                      ++++|+++|++|++|+++||||||+ |+||+||++++++     .++++++++|.++|+++|++|+++| |+ |++||+|
T Consensus       152 ~~~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a  228 (314)
T 3nep_X          152 RSFIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPG  228 (314)
T ss_dssp             HHHHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHH
T ss_pred             HHHHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHH
Confidence            9999999999999999999999998 9999999999864     2567778999999999999999998 56 9999999


Q ss_pred             HHHHHHHh
Q 023671          270 LNLRMHAS  277 (279)
Q Consensus       270 ~a~~~~~~  277 (279)
                      +|++++++
T Consensus       229 ~a~~~~~~  236 (314)
T 3nep_X          229 AAAAEMTE  236 (314)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999976

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=2e-51  Score=375.60  Aligned_cols=218  Identities=23%  Similarity=0.369  Sum_probs=199.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      |||+|||| |.+|+++++.|+..+++++|+|+|+++  ++|+++|+.|...    ..++..   ++| +++++|||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEE
Confidence            69999999 999999999999999999999999988  6788999998752    223443   346 789999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      ++|.|+++|++|.|++..|++++++++++|.++||+++++++|||+|++|+++    ++.+++|++||||+ |.||++||
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH----HHhcCCCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998754    77899999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHH
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRM  274 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~  274 (279)
                      ++++| ++|++|++ +++||||||+ ++||+||++++++ .+  ++++|.++|+++|++|+++|   ||++||+|+|+++
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~k---G~t~~~~a~a~~~  222 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHHH---SSCCHHHHHHHHH
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHH
Confidence            99999 99999999 9999999998 9999999999864 33  68899999999999999976   6899999999999


Q ss_pred             HHh
Q 023671          275 HAS  277 (279)
Q Consensus       275 ~~~  277 (279)
                      +++
T Consensus       223 ~~~  225 (294)
T 1oju_A          223 MVK  225 (294)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            886

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=2e-51  Score=380.08  Aligned_cols=229  Identities=33%  Similarity=0.511  Sum_probs=201.2

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCC
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~A  110 (279)
                      +.++++||+|||| |.+|+++++.|+..++. +|+|+|+++  ++|.++||.|...    ..++..   ++|+ ++++||
T Consensus         3 ~~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~a   76 (324)
T 3gvi_A            3 GSMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEGA   76 (324)
T ss_dssp             ---CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTTC
T ss_pred             CCCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCCC
Confidence            4456789999999 99999999999999986 999999988  6788999999742    234543   3465 899999


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-ch
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-ML  189 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~l  189 (279)
                      |+||+++|.|+++|++|.|++.+|++++++++++|+++||+++++++|||+|++|+++    ++.+++|++||||+| .|
T Consensus        77 DiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~L  152 (324)
T 3gvi_A           77 DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL----QKFSGLPAHKVVGMAGVL  152 (324)
T ss_dssp             SEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHH
T ss_pred             CEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH----HHhcCCCHHHEEeecCcc
Confidence            9999999999999999999999999999999999999999999999999999999765    677899999999996 89


Q ss_pred             hHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhhhc
Q 023671          190 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKA  259 (279)
Q Consensus       190 ds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~  259 (279)
                      |+.|+++++|+++|++|++|+++||||||+ +++|+||++++++          .++++++++|.++++++|++|+++| 
T Consensus       153 D~~R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-  230 (324)
T 3gvi_A          153 DSARFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-  230 (324)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-
Confidence            999999999999999999999999999998 9999999999864          1367788999999999999999988 


Q ss_pred             CCCcchHHHHHHHHHHHh
Q 023671          260 GAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       260 g~gs~~~s~A~a~~~~~~  277 (279)
                      |+||++||+|+|++++++
T Consensus       231 gkgsa~~~~a~a~~~~~~  248 (324)
T 3gvi_A          231 KTGSAFYAPAASAIQMAE  248 (324)
T ss_dssp             SSCCCCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHH
Confidence            899999999999999986

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=4.4e-51  Score=377.56  Aligned_cols=226  Identities=36%  Similarity=0.537  Sum_probs=205.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      +++||+|||+ |.+|+++++.|+..++. +|+|+|+++  ++|.++||.|...    ...+..   ++| +++++|||+|
T Consensus         4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d-~~a~~~aDvV   77 (321)
T 3p7m_A            4 ARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TND-YKDLENSDVV   77 (321)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCC-HHHHCCCCEE
Confidence            4579999998 99999999999999987 999999988  5788999999742    234443   246 5899999999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-chhHH
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVV  192 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~lds~  192 (279)
                      |+++|.|+++|++|.|++.+|++++++++++|.++||+++++++|||+|++|+++    ++.+++|++||||+| .||+.
T Consensus        78 Ii~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~LD~~  153 (321)
T 3p7m_A           78 IVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML----QKFSGVPDNKIVGMAGVLDSA  153 (321)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEECHHHHHH
T ss_pred             EEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHhcCCCHHHEEeeccchHHH
Confidence            9999999999999999999999999999999999999999999999999999654    777899999999996 89999


Q ss_pred             HHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C---------CCHHHHHHHHHHHHhhHHHHHhhhcCCC
Q 023671          193 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---------FTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (279)
Q Consensus       193 R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~g~g  262 (279)
                      |+++++|+++|++|++|+++||||||+ +++|+||++++++ +         ++++++++|.++++++|++|+++| |+|
T Consensus       154 R~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~g  231 (321)
T 3p7m_A          154 RFRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTG  231 (321)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             HHHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CCC
Confidence            999999999999999999999999998 9999999999864 1         367789999999999999999988 899


Q ss_pred             cchHHHHHHHHHHHh
Q 023671          263 SATLSMRLNLRMHAS  277 (279)
Q Consensus       263 s~~~s~A~a~~~~~~  277 (279)
                      |++||+|+|++++++
T Consensus       232 sa~~~~a~a~~~~~~  246 (321)
T 3p7m_A          232 SAYYAPAAAGIQMAE  246 (321)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH
Confidence            999999999999986

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=3.1e-51  Score=377.63  Aligned_cols=226  Identities=31%  Similarity=0.479  Sum_probs=205.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC--C--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--N--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~--~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~AD  111 (279)
                      +.+||+|||+ |.+|+++++.|+..++ ++|+|+|++  +  ++|.++|+.|..    ...++..   ++| +++++|||
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aD   80 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSD-YADTADSD   80 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESC-GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCC-HHHhCCCC
Confidence            4569999998 9999999999999998 899999998  4  578889999874    2334543   245 58899999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchh
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD  190 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~ld  190 (279)
                      +||+++|.|++||++|.|++..|+++++++++++.++||+++++++|||+|++|+++    ++.+|+|++||||+ |.||
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~----~k~sg~p~~rviG~gt~LD  156 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV----FKEAGFPKERVIGQSGVLD  156 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH----HHhcCCChHHEEeeccCcH
Confidence            999999999999999999999999999999999999999999999999999999875    56679999999999 9999


Q ss_pred             HHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          191 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       191 s~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      +.|+++++|+++|++|++|+++||||||+ |+||+||++++++     .++++++++|.++|+++|++|++++ ||||++
T Consensus       157 ~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~  234 (315)
T 3tl2_A          157 TARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAY  234 (315)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcch
Confidence            99999999999999999999999999998 9999999999864     2577788999999999999999974 789999


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      ||+|+|++++++
T Consensus       235 ~a~a~a~~~~~~  246 (315)
T 3tl2_A          235 YAPAASLVEMTE  246 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999986

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=2.3e-51  Score=380.00  Aligned_cols=226  Identities=24%  Similarity=0.342  Sum_probs=204.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +++||+|||+ |.||+++++.|+..+++++|+|+|+++  ++|.++||.|....  ..++.+.  ++ +++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~--~~-~~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY--GT-YEDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEE--EC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEe--Cc-HHHhCCCCEEEE
Confidence            4579999998 999999999999999989999999987  68999999997422  2444432  34 588999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      ++|.|+++|++|.|++..|+++++++++.|.++||+++++++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT----WKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH----HHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998754    67789999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----------CCHHHHHHHHHHHHhhHHHHHhhhcCCCc
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs  263 (279)
                      ++++|+++|++|++|+++||||||+ |+||+||++++++ +          ++++++++|.++|+++|++|+++|   |+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCC---CC
Confidence            9999999999999999999999999 9999999999864 1          156678999999999999999965   78


Q ss_pred             chHHHHHHHHHHHh
Q 023671          264 ATLSMRLNLRMHAS  277 (279)
Q Consensus       264 ~~~s~A~a~~~~~~  277 (279)
                      |+||+|+|++++++
T Consensus       232 t~~a~a~a~~~~~~  245 (326)
T 3pqe_A          232 TYYGVAMSLARITK  245 (326)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999999986

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=3.3e-50  Score=372.47  Aligned_cols=238  Identities=89%  Similarity=1.310  Sum_probs=216.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .++|||+||||+|+||++++..|+.++++.||+|+|+++..+.++||.+......+..+.+++|++++++|||+||+++|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            35679999996699999999999998877899999998767788999986533355554334577889999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  198 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~l  198 (279)
                      .|+++|++|.|++..|+++++++++++.+++|+++++++|||+|++|+++++++++.+++|++||||+|.||+.|+++++
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~l  165 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFV  165 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCcceeecCC-CCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          199 AEVLGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       199 a~~l~v~~~~V~~~ViGeh-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      |+++|++|++|+++||||| |+ +++|+||++++...+++++++++.++++++|++|++.|.|+||++||+|.+++++++
T Consensus       166 a~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~  244 (326)
T 1smk_A          166 AEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  244 (326)
T ss_dssp             HHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999 76 999999999986668888899999999999999999887889999999999999854

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=1.6e-50  Score=376.58  Aligned_cols=238  Identities=25%  Similarity=0.353  Sum_probs=199.1

Q ss_pred             hccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCH
Q 023671           33 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQL  103 (279)
Q Consensus        33 ~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~  103 (279)
                      ++-++.+++.||+||||+|.||++++++|++.+++.     ||+|+|+++    ++|.++||+|+........+. ++|.
T Consensus        16 ~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~~~~   94 (345)
T 4h7p_A           16 TQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-TADP   94 (345)
T ss_dssp             ------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-ESCH
T ss_pred             ccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-cCCh
Confidence            555566777799999998999999999999988765     999999987    368899999987443344333 3467


Q ss_pred             HhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCC
Q 023671          104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  182 (279)
Q Consensus       104 ~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~k  182 (279)
                      +++++|||+||++||.||||||+|.|++..|++|++++++.|.+++ |+++++++|||+|++|+++.   ++.+|+|+.|
T Consensus        95 ~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~---~~~~g~~~~r  171 (345)
T 4h7p_A           95 RVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILL---KSAQGKLNPR  171 (345)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH---HHTTTCSCGG
T ss_pred             HHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHH---HHccCCCCcc
Confidence            8999999999999999999999999999999999999999999997 78999999999999998752   4566877777


Q ss_pred             eeee-cchhHHHHHHHHHHHcCCCCCCCcc-eeecCCCCceeeeecccCCCCCC-----CCHHHH-HHHHHHHHhhHHHH
Q 023671          183 LLGV-TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPCS-----FTQEET-EYLTNRIQNGGTEV  254 (279)
Q Consensus       183 ViG~-t~lds~R~~~~la~~l~v~~~~V~~-~ViGehg~~~~vp~~S~~~v~~~-----~~~~~~-~~i~~~v~~~~~~i  254 (279)
                      +||. |.||++||+++||+++|++|++|+. +|||+||+ ++||+||++++++.     ++++.+ +++.++++++|++|
T Consensus       172 ~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eI  250 (345)
T 4h7p_A          172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEI  250 (345)
T ss_dssp             GEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHH
T ss_pred             eeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhh
Confidence            7776 9999999999999999999999985 58899999 99999999998651     333333 57999999999999


Q ss_pred             HhhhcCCCcchHHHHHHHHHHHh
Q 023671          255 VEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       255 ~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +++|  ++|++||+|.|++++++
T Consensus       251 i~~k--g~ss~~s~a~a~~~~~~  271 (345)
T 4h7p_A          251 IQLR--GLSSAMSAAKAAVDHVH  271 (345)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHH
T ss_pred             hhcC--CCcchhhHHHHHHHHHH
Confidence            9988  35788999999999875

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=6.9e-49  Score=368.15  Aligned_cols=227  Identities=23%  Similarity=0.242  Sum_probs=191.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcE---EEEEeCCC------chhHHhhhhcccC-C-CeEEEEeCCCCHHhhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSV---LHLYDVVN------TPGVTADISHMDT-G-AVVRGFLGQPQLENALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~e---v~L~D~~~------~~g~~~DL~~~~~-~-~~v~~~~~~~d~~eal~  108 (279)
                      +++||+||||+|+||+++++.|+.+++++|   |+|+|.+.      ++|+++||+|... . ..++..   ++.+++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~---~~~y~~~~  107 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG---IDPYEVFE  107 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE---SCHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe---cCCHHHhC
Confidence            457999999779999999999999999887   77766543      5899999999863 2 234432   34479999


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-  186 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-  186 (279)
                      |||+||+++|.|++|||+|.|++..|+++++++++.|.++ +|+++++++|||+|+|||++    ++.++++++|+||. 
T Consensus       108 daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia----~k~sg~~~~rvig~g  183 (375)
T 7mdh_A          108 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC----LKNAPDIPAKNFHAL  183 (375)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----HHHcCCCCccEEEee
Confidence            9999999999999999999999999999999999999998 79999999999999999875    66667777789998 


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcc-eeecCCCCceeeeecccCCCCC----C-CCHHHH--HHHHHHHHhhHHHHHhhh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC----S-FTQEET--EYLTNRIQNGGTEVVEAK  258 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~-~ViGehg~~~~vp~~S~~~v~~----~-~~~~~~--~~i~~~v~~~~~~i~~~k  258 (279)
                      |.||++||+++||+++|++|++|+. +||||||+ |+||+||++++++    . +.+++|  ++|.++|+++|++|+++|
T Consensus       184 T~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k  262 (375)
T 7mdh_A          184 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW  262 (375)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999985 89999998 9999999999864    1 334445  689999999999999987


Q ss_pred             cCCCcchHHHHHHHHHHH
Q 023671          259 AGAGSATLSMRLNLRMHA  276 (279)
Q Consensus       259 ~g~gs~~~s~A~a~~~~~  276 (279)
                       |.+|+ .+.|.++++.+
T Consensus       263 -G~ts~-a~aa~~i~~~i  278 (375)
T 7mdh_A          263 -GRSSA-ASTAVSIADAI  278 (375)
T ss_dssp             -SSCCH-HHHHHHHHHHH
T ss_pred             -CCCch-HHHHHHHHHHH
Confidence             54443 33455555554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=2.7e-50  Score=372.57  Aligned_cols=215  Identities=22%  Similarity=0.281  Sum_probs=194.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC---CCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~---~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      +.+||+|||+ |.||+++++.++.+++++||+|+|+++  ++|.++||.|...   ..++..   ++|+ ++++|||+||
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~---t~d~-~~~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS---GKDY-SVSAGSKLVV   94 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE---ESSS-CSCSSCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE---cCCH-HHhCCCCEEE
Confidence            3579999999 999999999999999999999999987  6899999999742   223332   3565 5699999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHH
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  193 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R  193 (279)
                      +++|.|+++||+|.|++.+|++++++++++|.+++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~----~k~sg~p~~rViG~gt~LDs~R  170 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD----WKLSGLPMHRIIGSGCNLDSAR  170 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEECCTTHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH----HHHhCCCHHHeecccCchhHHH
Confidence            999999999999999999999999999999999999999999999999999765    66779999999999 7899999


Q ss_pred             HHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHH-HHHHHHHHhhHHHHHhhhcCCCcchHHHHH--
Q 023671          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET-EYLTNRIQNGGTEVVEAKAGAGSATLSMRL--  270 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~-~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~--  270 (279)
                      +++++|+++|++|++|+++||||||+ |++|+||+          +| ++|.++|+++|++|+++|   |+++||+|+  
T Consensus       171 ~~~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~----------~~~~~~~~~v~~~g~eii~~k---g~t~~a~a~~~  236 (330)
T 3ldh_A          171 FRYLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSG----------MWDAKLHKDVVDSAYEVIKLK---GYTSWAIGLVV  236 (330)
T ss_dssp             HHHHHHHHHTSCTTTCCEEECSSSST-TCCEEEEE----------EEETTEEHHHHHCCCTTSTTC---HHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCHHHeEEEEEcCCCC-ceeeechh----------hHHHHHHHHHHHHHHHHHHcc---CCcceeeeeec
Confidence            99999999999999999999999998 99999998          34 689999999999999964   789999999  


Q ss_pred             ---------------HHHHHHh
Q 023671          271 ---------------NLRMHAS  277 (279)
Q Consensus       271 ---------------a~~~~~~  277 (279)
                                     +++++++
T Consensus       237 ~~~~~~~~~~~~~~~a~~~~~~  258 (330)
T 3ldh_A          237 SNPVDVLTYVAWKGCSVADLAQ  258 (330)
T ss_dssp             HHHHTTSSSCSCTHHHHHHHHH
T ss_pred             cCccchhhhhhhHHHHHHHHHH
Confidence                           9988875

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=5.4e-49  Score=363.23  Aligned_cols=225  Identities=23%  Similarity=0.369  Sum_probs=192.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|... ...++...  ++ +++++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEECC
Confidence            479999999 999999999999999999999999987  6788999999752 23344332  24 68899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  196 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~  196 (279)
                      |.|+++|++|.|++.+|+++++++++.|+++||++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH----HHHcCCCHHHEEeccccchHHHHHH
Confidence            999999999999999999999999999999999999999999999998654    77789999999999 9999999999


Q ss_pred             HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchH
Q 023671          197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  266 (279)
Q Consensus       197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~  266 (279)
                      ++|+++|++|++|+++||||||+ +++|+||++++++          .++++.++++.++++++|++|++.|   |+++|
T Consensus       157 ~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t~~  232 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATFY  232 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---SCCCH
T ss_pred             HHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCC---CcchH
Confidence            99999999999999999999998 9999999998853          1456678999999999999999955   68899


Q ss_pred             HHHHHHHHHHh
Q 023671          267 SMRLNLRMHAS  277 (279)
Q Consensus       267 s~A~a~~~~~~  277 (279)
                      ++|.|++++++
T Consensus       233 ~~a~a~~~~~~  243 (318)
T 1ez4_A          233 GIGTALMRISK  243 (318)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999975

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=8.7e-49  Score=362.96  Aligned_cols=226  Identities=24%  Similarity=0.377  Sum_probs=197.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +.+||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|... ..+++...  ++ +++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4479999999 999999999999999999999999987  6788999999742 23344332  24 6889999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~  195 (279)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH----HHHcCCCHHHEEEccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    77789999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (279)
Q Consensus       196 ~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~  264 (279)
                      +++|+++|++|++|+++||||||+ +++|+||++++++           .++++.++++.++++++|++|++.|   |++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k---G~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHH---SCC
T ss_pred             HHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcC---CCc
Confidence            999999999999999999999998 9999999998753           1455668899999999999999955   688


Q ss_pred             hHHHHHHHHHHHh
Q 023671          265 TLSMRLNLRMHAS  277 (279)
Q Consensus       265 ~~s~A~a~~~~~~  277 (279)
                      +|++|.|++++++
T Consensus       236 ~~~~a~aa~~~~~  248 (326)
T 2zqz_A          236 FYGIATALARISK  248 (326)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999975

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=1.6e-48  Score=358.85  Aligned_cols=224  Identities=23%  Similarity=0.380  Sum_probs=201.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|... ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            59999999 999999999999999999999999987  6788999999752 12333332  35 688999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~  197 (279)
                      .|+++|++|.|++.+|+++++++++.|+++||++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA----YALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    67779999999999 99999999999


Q ss_pred             HHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC------------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       198 la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      +|+++|++|++|+++|+||||+ +++|+||++++++.            ++++.++++.++++++|++|++.|   |+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHH---SCCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhcc---CCcH
Confidence            9999999999999999999999 99999999987531            356678999999999999999965   6889


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      +++|.|++++++
T Consensus       229 ~~~a~a~~~~~~  240 (310)
T 2xxj_A          229 YGIGAGLARLVR  240 (310)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.6e-48  Score=362.04  Aligned_cols=230  Identities=24%  Similarity=0.363  Sum_probs=196.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~e-----v~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A  110 (279)
                      +++||+|+||+|+||+++++.|+.+++++|     |+|+|+++    ++|.++||.|... +.+..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~-~~~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh-cccCCEEEcCCcHHHhCCC
Confidence            467999999779999999999999999888     99999974    5799999999752 2223222234667999999


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc-eEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cc
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  188 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a-~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~  188 (279)
                      |+||++||.|+++|++|.|++..|+++++++++++++++|++ +++++|||+|++|+++    ++.++++|+++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~----~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH----HHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999998 6999999999999865    56665555566876 99


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCcce-eecCCCCceeeeecccCCC--CC-CC------CHHHH--HHHHHHHHhhHHHHHh
Q 023671          189 LDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKP--PC-SF------TQEET--EYLTNRIQNGGTEVVE  256 (279)
Q Consensus       189 lds~R~~~~la~~l~v~~~~V~~~-ViGehg~~~~vp~~S~~~v--~~-~~------~~~~~--~~i~~~v~~~~~~i~~  256 (279)
                      ||++||++++|+++|++|++|+++ ||||||+ ++||+||++++  ++ ++      ++++|  ++|.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988 5999999 99999999975  33 22      22334  5899999999999999


Q ss_pred             hhcCCCcchHHHHHHHHHHHh
Q 023671          257 AKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       257 ~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +|  ++++.|++|.+++++++
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~  254 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVR  254 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHH
T ss_pred             cc--CchHHHHHHHHHHHHHH
Confidence            87  35678999999998875

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=4.2e-48  Score=355.81  Aligned_cols=221  Identities=26%  Similarity=0.459  Sum_probs=200.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      ||+|||| |+||+++++.++.+++ +||+|+|+++  +++.++|+.|..    ...++..   ++|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999999 9999999999998898 8999999988  678899999863    1334443   2465 899999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~  195 (279)
                      +|.|+++|++|.|++.+|++++++++++|+++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM----YKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999754    67789999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----CCHHHHHHHHHHHHhhHHHHHhhhcCCC-cchHHHH
Q 023671          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAG-SATLSMR  269 (279)
Q Consensus       196 ~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~g~g-s~~~s~A  269 (279)
                      +++|+++|++|++|+++|||+||+ +++|+||++++++ +    +++++++++.++++++|++|++.|   | |++|++|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR---GYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH---SSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhCC---CCccHHHHH
Confidence            999999999999999999999998 9999999999864 1    577789999999999999999965   6 8999999


Q ss_pred             HHHHHHHh
Q 023671          270 LNLRMHAS  277 (279)
Q Consensus       270 ~a~~~~~~  277 (279)
                      .|++++++
T Consensus       227 ~a~~~~~~  234 (308)
T 2d4a_B          227 AGLVLTVE  234 (308)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999975

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=8e-48  Score=355.18  Aligned_cols=226  Identities=24%  Similarity=0.370  Sum_probs=201.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +++||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++|+.|....  ..++...  ++ +++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEEE
Confidence            4579999999 999999999999999889999999987  67888999886321  2334332  24 688999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      ++|.|+++|++|.|++.+|+++++++++.|+++||++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~lD~~r~  156 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYAT----WKFSGLPKERVIGSGTILDSARF  156 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHhCCCHHHEEecCccccHHHH
Confidence            99999999999999999999999999999999999999999999999998654    77789999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC----------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~  264 (279)
                      ++++|+++|++|++|+++||||||+ +++|+||++++++.          ++++.++++.++++++|++|++.|   |++
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~~  232 (317)
T 3d0o_A          157 RLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GAT  232 (317)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHH---SCC
T ss_pred             HHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCC---CCc
Confidence            9999999999999999999999998 99999999988541          345567899999999999999955   689


Q ss_pred             hHHHHHHHHHHHh
Q 023671          265 TLSMRLNLRMHAS  277 (279)
Q Consensus       265 ~~s~A~a~~~~~~  277 (279)
                      +|++|.|++++++
T Consensus       233 ~~~~a~a~~~~~~  245 (317)
T 3d0o_A          233 YYGVAMGLARITE  245 (317)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHH
Confidence            9999999999975

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.5e-47  Score=353.51  Aligned_cols=226  Identities=27%  Similarity=0.418  Sum_probs=192.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +++||+|||| |+||+++++.|+.+++++||+|+|+++  ++|.++||.|... ...++...  ++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4579999999 999999999999999999999999988  6888999999752 23444432  35 6889999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~  195 (279)
                      +|.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~----~k~s~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHcCCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999765    66779999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----CC--------CHHHHHHHHHHHHhhHHHHHhhhcCCCc
Q 023671          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----SF--------TQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (279)
Q Consensus       196 ~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----~~--------~~~~~~~i~~~v~~~~~~i~~~k~g~gs  263 (279)
                      +++|+++|++|++|+++|+||||+ +++|+||++++++    .+        ++++++++.++++++|++|++.|   |+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHT---SC
T ss_pred             HHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCC---Cc
Confidence            999999999999999999999998 9999999998743    11        23446899999999999999954   78


Q ss_pred             chHHHHHHHHHHHh
Q 023671          264 ATLSMRLNLRMHAS  277 (279)
Q Consensus       264 ~~~s~A~a~~~~~~  277 (279)
                      ++|++|.|++++++
T Consensus       234 t~~~~a~a~~~~~~  247 (318)
T 1y6j_A          234 TYYGIAVSINTIVE  247 (318)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999999975

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=5e-47  Score=347.75  Aligned_cols=225  Identities=24%  Similarity=0.344  Sum_probs=200.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~--~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      |||+||||+|+||++++..|+.+++..|++|+|+  ++  +++.++|+.|... ...++...  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            5999999779999999999999998899999999  65  5677899998642 22333332  24 6889999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  195 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~  195 (279)
                      +|.++++|++|.|++..|+++++++++.+++++|+++++++|||+|++|++    +++.+++|++||||+ |.||+.|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~----~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH----HHHHcCCCHHHeeecccchhHHHHH
Confidence            999999999999999999999999999999999999999999999999865    477889999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC--CC-CHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHH
Q 023671          196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC--SF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNL  272 (279)
Q Consensus       196 ~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~--~~-~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~  272 (279)
                      +++|+++|++|++|+++||||||+ +++|+||++++++  ++ ++++++++.++++++|++|++.   +|+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~~---kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---KGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTT---TSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHhc---CCChHHHHHHHH
Confidence            999999999999999999999999 9999999988642  33 6778999999999999999994   578999999999


Q ss_pred             HHHHh
Q 023671          273 RMHAS  277 (279)
Q Consensus       273 ~~~~~  277 (279)
                      +++++
T Consensus       230 ~~~~~  234 (303)
T 1o6z_A          230 AHMVE  234 (303)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99975

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=4.9e-47  Score=348.73  Aligned_cols=225  Identities=27%  Similarity=0.452  Sum_probs=193.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      ++||+|||| |+||+++++.|+..++++ |+|+|+++  +++.++|+.|..    ...++..   ++|+ ++++|||+||
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi   75 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIV   75 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEE
Confidence            369999999 999999999999999764 99999987  678889999863    1234443   3576 8899999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHH
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  193 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R  193 (279)
                      +++|.|+++|++|.|++.+|+++++++++.+++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||+.|
T Consensus        76 ~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~----~~~~~~~~~rviG~gt~LD~~r  151 (309)
T 1ur5_A           76 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIGQAGVLDAAR  151 (309)
T ss_dssp             ECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH----HHHcCCCHHHEEECCcchHHHH
Confidence            999999999999999999999999999999999999999999999999998654    66789999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHH
Q 023671          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM  268 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~  268 (279)
                      +++++|+++|++|++|+++||||||+ +++|+||++++++     .+++++++++.++++++|++|++. .++||++|++
T Consensus       152 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~  229 (309)
T 1ur5_A          152 YRTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAP  229 (309)
T ss_dssp             HHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHH
T ss_pred             HHHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHH
Confidence            99999999999999999999999998 9999999998854     257778999999999999999995 2567999999


Q ss_pred             HHHHHHHHh
Q 023671          269 RLNLRMHAS  277 (279)
Q Consensus       269 A~a~~~~~~  277 (279)
                      |.+++++++
T Consensus       230 a~a~~~~~~  238 (309)
T 1ur5_A          230 AAATAQMVE  238 (309)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999975

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=1.3e-46  Score=346.85  Aligned_cols=226  Identities=24%  Similarity=0.349  Sum_probs=200.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +++||+|||+ |.||+++++.|+..++++||+|+|+++  +++.++|+.|....  ..++...  ++ +++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEE
Confidence            4579999999 999999999999989889999999987  67788999986421  1344432  34 588999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      ++++++++|++|.|++.+|+++++++++.+++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~----~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH----HHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999755    66779999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----C-------CCHHHHHHHHHHHHhhHHHHHhhhcCCCc
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----~-------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs  263 (279)
                      ++++|+++|++|++|+++||||||+ +++|+||++++++    +       +++++++++.++++++|++|++.|   |+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhcc---CC
Confidence            9999999999999999999999998 9999999988753    1       334557899999999999999965   68


Q ss_pred             chHHHHHHHHHHHh
Q 023671          264 ATLSMRLNLRMHAS  277 (279)
Q Consensus       264 ~~~s~A~a~~~~~~  277 (279)
                      ++|++|.|++++++
T Consensus       233 ~~~~~a~a~~~~~~  246 (316)
T 1ldn_A          233 TYYGIAMGLARVTR  246 (316)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            89999999999975

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=6.7e-47  Score=348.31  Aligned_cols=227  Identities=26%  Similarity=0.442  Sum_probs=195.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~--~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      |||+||||+|+||+++++.|+.+++..|++|+|+  ++  +++.++|+.|....  ..++....+++++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            5999999999999999999999998889999999  65  57888999886421  233332222235789999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      +||.|+++|++|.|++..|+++++++++.+++++ +++++++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA----LVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH----HHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH----HHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999765    66789999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----C---CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHH
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  267 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----~---~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s  267 (279)
                      ++++|+++|++|++|+++|||+||+ +++|+||++++.+    .   +++++++++.++++++|++|++.   +||++|+
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL---KGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeecC---CCCcHHH
Confidence            9999999999999999999999998 9999999998854    2   25566899999999999999984   5789999


Q ss_pred             HHHHHHHHHh
Q 023671          268 MRLNLRMHAS  277 (279)
Q Consensus       268 ~A~a~~~~~~  277 (279)
                      +|.+++++++
T Consensus       232 ~a~a~~~~~~  241 (313)
T 1hye_A          232 PAAAILNVVR  241 (313)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999975

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=2.3e-46  Score=343.47  Aligned_cols=217  Identities=18%  Similarity=0.250  Sum_probs=187.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +++||+|||| |+||+++++.++.+++++||+|+|+++ +.+.++|+.|.. .++++..   +|+ ++++|||+||+++|
T Consensus        13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~-~~~i~~t---~d~-~~l~~aD~Vi~aag   86 (303)
T 2i6t_A           13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN-LPNVEIS---KDL-SASAHSKVVIFTVN   86 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT-CTTEEEE---SCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc-CCCeEEe---CCH-HHHCCCCEEEEcCC
Confidence            3469999998 999999999999999999999999987 778889999854 3456652   476 88999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~  197 (279)
                      .+ ++|++|.|++.+|++++++++++++++||+++++++|||+|++|++    +++.+++|++||||+ |.||+.|++++
T Consensus        87 ~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~----~~~~~~~p~~rviG~gt~Ld~~R~~~~  161 (303)
T 2i6t_A           87 SL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYV----TWKLSTFPANRVIGIGCNLDSQRLQYI  161 (303)
T ss_dssp             C-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHHHH
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHH----HHHhcCCCHHHeeCCCCCchHHHHHHH
Confidence            96 8999999999999999999999999999999999999999999865    477789999999999 99999999999


Q ss_pred             HHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       198 la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +|+++|++|++|+++||||||+ +++|+||+...   +   ..+++.++++++|++|++   ++||++||+|.+++++++
T Consensus       162 la~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~~  231 (303)
T 2i6t_A          162 ITNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQEE---V---VSHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMVD  231 (303)
T ss_dssp             HHHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHeEEEEecCCCC-Ccccccccccc---c---cHHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHHH
Confidence            9999999999999999999998 89999999632   2   125788889999999998   567999999999999875

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=9.1e-45  Score=335.49  Aligned_cols=224  Identities=29%  Similarity=0.481  Sum_probs=198.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      +++||+|||| |.+|++++..|+..++++ |+|+|+++  +++.++|+.+..    ...+++.   ++|+ ++++|||+|
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~V   76 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVV   76 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            3569999999 999999999999999864 99999988  577788888752    1334543   3576 899999999


Q ss_pred             EEccCCCCCCCCc-----hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-c
Q 023671          114 IIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T  187 (279)
Q Consensus       114 Iitag~~~k~g~~-----r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t  187 (279)
                      |+++|.|+++|++     |.|++.+|++++++++++|+++||+++++++|||+|++|+++    ++.++||++||+|+ |
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~----~~~~g~~~~rviG~gt  152 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGLGG  152 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECCH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH----HHhcCCChHHEEeccC
Confidence            9999999999999     999999999999999999999999999999999999998664    56678999999999 6


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhh
Q 023671          188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  257 (279)
Q Consensus       188 ~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~  257 (279)
                      .||++|+++++|+++|++|++|+++||||||+ +++|+||++++.+          .+++++++++.++++++|++|++.
T Consensus       153 ~ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~  231 (322)
T 1t2d_A          153 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999998 9999999988753          146667899999999999999996


Q ss_pred             hcCCCcchHHHHHHHHHHHh
Q 023671          258 KAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       258 k~g~gs~~~s~A~a~~~~~~  277 (279)
                      |   ||++||+|.+++++++
T Consensus       232 k---gs~~~~~a~a~~~~~~  248 (322)
T 1t2d_A          232 H---ASPYVAPAAAIIEMAE  248 (322)
T ss_dssp             T---SSCCHHHHHHHHHHHH
T ss_pred             c---CchHHHHHHHHHHHHH
Confidence            5   6899999999999975

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=7.4e-45  Score=336.83  Aligned_cols=225  Identities=35%  Similarity=0.533  Sum_probs=199.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      ++||+|||| |.+|++++..|+..+++ +|+|+|+++  +++.++|+.|...    ..++..   ++|+ ++++|||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEE
Confidence            469999999 99999999999999986 499999988  5666778877531    234543   3576 8999999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHH
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  193 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R  193 (279)
                      +++|.|+++|++|.|++.+|++++++++++|+++||+++++++|||+|++|+++    ++.+++|++||+|+ |.||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~----~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF----KEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHhcCCChhhEEEeCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999998655    66779999999999 4899999


Q ss_pred             HHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC----------CCHHHHHHHHHHHHhhHHHHHhhhcCCCc
Q 023671          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs  263 (279)
                      +++++|+++|++|++|+++|||+||+ +++|+||++++++.          +++++++++.++++++|++|++.. |+||
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            99999999999999999999999998 99999999987541          456678899999999999999964 6789


Q ss_pred             chHHHHHHHHHHHh
Q 023671          264 ATLSMRLNLRMHAS  277 (279)
Q Consensus       264 ~~~s~A~a~~~~~~  277 (279)
                      ++||+|.+++++++
T Consensus       242 ~~~~~a~a~~~i~~  255 (328)
T 2hjr_A          242 AFYAPAASAVAMAQ  255 (328)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999999975

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=1.2e-44  Score=335.74  Aligned_cols=228  Identities=32%  Similarity=0.533  Sum_probs=200.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~ADi  112 (279)
                      ++++||+|||| |.+|++++..|+..+++ +|+|+|+++  +++.+.|+.|..    ...+++.   ++|++++++|||+
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDi   81 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADC   81 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCE
Confidence            34579999999 99999999999998875 499999998  566667777752    1234543   3578779999999


Q ss_pred             EEEccCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-
Q 023671          113 VIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-  186 (279)
Q Consensus       113 VIitag~~~k~g~-----~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-  186 (279)
                      ||+++|.|+++|+     +|.|++.+|++++++++++|+++||+++++++|||+|++|+++    ++.+++|++||+|+ 
T Consensus        82 Vi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~----~~~~~~~~~rviG~g  157 (331)
T 1pzg_A           82 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGMA  157 (331)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECC
T ss_pred             EEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH----HHhcCCChhcEEecc
Confidence            9999999999999     9999999999999999999999999999999999999998664    56679999999999 


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC----------CCHHHHHHHHHHHHhhHHHHHh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----------FTQEETEYLTNRIQNGGTEVVE  256 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~~~~i~~  256 (279)
                      |.||+.|+++++|+++|++|++|+++|||+||+ +++|+||++++++.          +++++++++.++++++|++|++
T Consensus       158 t~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~  236 (331)
T 1pzg_A          158 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR  236 (331)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHH
Confidence            689999999999999999999999999999998 99999999987541          4566688999999999999999


Q ss_pred             hhcCCCcchHHHHHHHHHHHh
Q 023671          257 AKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       257 ~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      .. ++||++||+|.+++++++
T Consensus       237 ~~-~kgst~~~~a~a~~~ii~  256 (331)
T 1pzg_A          237 FL-GQGSAYYAPAASAVAMAT  256 (331)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHH
T ss_pred             hh-cCCCccchHHHHHHHHHH
Confidence            52 467999999999999975

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=2.8e-44  Score=332.91  Aligned_cols=230  Identities=23%  Similarity=0.336  Sum_probs=196.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC----C--chhHHhhhhcccCCCeEEEEeCCCCHHhhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV----N--TPGVTADISHMDTGAVVRGFLGQPQLENALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~-----~ev~L~D~~----~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~  108 (279)
                      +++||+||||+|+||+++++.|+.+++.     .||+|+|++    +  +.+.++||.|..... ...+..+++++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            4679999998899999999999998875     499999998    5  578899999953211 222222457889999


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeee
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  186 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~  186 (279)
                      |||+||++||.++++|++|.|++..|++++++++++++++| |+++++++|||+|++|+++    ++.+ +||++|++|+
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~----~~~~~~~p~~~v~g~  158 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA----MKSAPSLPAKNFTAM  158 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH----HHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999997 9999999999999999765    5566 9999999999


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcc-eeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhhh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK  258 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~-~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k  258 (279)
                      |.||+.|+++++|+++|++|++|++ +|||+||+ +++|+||++++++ +    +++++  .++|.++++++|++|++.|
T Consensus       159 t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k  237 (329)
T 1b8p_A          159 LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR  237 (329)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999995 58999998 9999999999864 2    23334  3799999999999999998


Q ss_pred             cCCCcchHHHHHHHHHHHh
Q 023671          259 AGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       259 ~g~gs~~~s~A~a~~~~~~  277 (279)
                       |. +++++.|.+++++++
T Consensus       238 -g~-~~~~~~a~a~~~~~~  254 (329)
T 1b8p_A          238 -GV-SSAASAANAAIDHIH  254 (329)
T ss_dssp             -SS-CCHHHHHHHHHHHHH
T ss_pred             -CC-ChHHHHHHHHHHHHH
Confidence             43 344556778888764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.1e-43  Score=325.68  Aligned_cols=222  Identities=24%  Similarity=0.349  Sum_probs=175.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+|||| |.+|+++++.|+..+++++|+|+|+++  +++.++|+.|... ....+...  ++ ++++++||+||++++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~-~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GG-HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--EC-GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CC-HHHhCCCCEEEEcCC
Confidence            59999999 999999999999999989999999987  5677888887642 12233322  35 478999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~  197 (279)
                      .|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++++++    ++.+  |++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~----~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA----TQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH----HHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH----HHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998654    5554  89999999 99999999999


Q ss_pred             HHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC------------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       198 la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      +|+++|++|++|+++|+|+||+ +++|+||++++++.            +++++++++.++++++|++|++.   +|+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~---kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEG---KRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhc---cCCcH
Confidence            9999999999999999999998 99999999998541            35667899999999999999994   57899


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      +++|.+++++++
T Consensus       227 ~~~a~a~~~~~~  238 (304)
T 2v6b_A          227 YGIGAALARITE  238 (304)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=6e-43  Score=321.47  Aligned_cols=225  Identities=31%  Similarity=0.516  Sum_probs=198.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      |||+|||+ |.+|++++..|+..+...+|+|+|+++  +++..+|+.+..    ...++..   ++|+ +++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDY-ADTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCH-HHHCCCCEEEE
Confidence            59999999 999999999999876566999999987  566666777652    1233443   3465 45999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~  194 (279)
                      +++.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|.+++++    ++.+++|++||||+ |.||+.|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~----~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHH----HHhcCCChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999998654    66689999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHH
Q 023671          195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR  269 (279)
Q Consensus       195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A  269 (279)
                      ++++|+++|++|++|+++|||+||+ +++|+||++++.+ +    +++++++++.++++++|++|++. .++||++|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999997 9999999999864 1    56778999999999999999995 25679999999


Q ss_pred             HHHHHHHh
Q 023671          270 LNLRMHAS  277 (279)
Q Consensus       270 ~a~~~~~~  277 (279)
                      .+++++++
T Consensus       230 ~a~~~~~~  237 (310)
T 1guz_A          230 SSVVEMVE  237 (310)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999975

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.5e-40  Score=305.13  Aligned_cols=224  Identities=28%  Similarity=0.458  Sum_probs=194.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+|||+ |.+|++++..|+..++.++|+|+|+++  +++...|+.+... ....+...  +| ++++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~d-~~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GD-YADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe--CC-HHHhCCCCEEEEccC
Confidence            59999999 999999999999988888999999986  4555666665421 11122222  25 478999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  197 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~  197 (279)
                      .++++|++|.|++.+|+++++++++.|++++|+++++++|||++.+++++    ++.+++|++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH----HHHhCCChhhEEeeCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998654    55668999999999 78999999999


Q ss_pred             HHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC-----------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchH
Q 023671          198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  266 (279)
Q Consensus       198 la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~  266 (279)
                      +|+++|++|++|+++|+||||+ +++|+||++++++.           ++++.++++.++++++|++|++.|   |++++
T Consensus       153 la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~~~~  228 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATHY  228 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH---SCCCH
T ss_pred             HHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccC---CchHH
Confidence            9999999999999999999998 99999999987531           456678899999999999999965   68889


Q ss_pred             HHHHHHHHHHh
Q 023671          267 SMRLNLRMHAS  277 (279)
Q Consensus       267 s~A~a~~~~~~  277 (279)
                      ++|.+++++++
T Consensus       229 ~~a~a~~~~~~  239 (319)
T 1a5z_A          229 AIALAVADIVE  239 (319)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999975

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.3e-39  Score=297.05  Aligned_cols=225  Identities=20%  Similarity=0.275  Sum_probs=189.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      ||||+|||+ |.+|++++..|+..++..+|+|+|+++  +++.+.|+.|...  ...++...  +|+ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe--CCH-HHhCCCCEEEEe
Confidence            369999998 999999999999888656999999987  4566667665431  11233322  366 889999999999


Q ss_pred             cCCCCC----CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhH
Q 023671          117 AGVPRK----PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  191 (279)
Q Consensus       117 ag~~~k----~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds  191 (279)
                      ++.+++    +|++|.|++.+|+++++++++.+.+++|+++++++|||+|++++++    ++.+++|++||+|+ |.||+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHH----HHhcCCCHHHEeecCccchH
Confidence            999988    9999999999999999999999999999999999999999988654    66678999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671          192 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  264 (279)
Q Consensus       192 ~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~  264 (279)
                      .|+++++++.+++++.+++++++|+||+ +++|+||++.+++ +      +++++|+++.++++++|++|++.|   |++
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~~  228 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYT  228 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH---SSC
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhcc---CCc
Confidence            9999999999999999999999999998 9999999998754 1      456678999999999999999976   678


Q ss_pred             hHHHHHHHHHHHh
Q 023671          265 TLSMRLNLRMHAS  277 (279)
Q Consensus       265 ~~s~A~a~~~~~~  277 (279)
                      +|++|.+++++++
T Consensus       229 ~~~~a~a~~~~~~  241 (309)
T 1hyh_A          229 SYGVATSAIRIAK  241 (309)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            8999999999875

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=4.1e-38  Score=289.82  Aligned_cols=225  Identities=30%  Similarity=0.469  Sum_probs=196.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      ++||+|||| |.+|+.++..|+..|+. +|+|+|+++  +++..+|+.+..    ...++..   ++|+ +++++||+||
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiVi   77 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVVI   77 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEE
Confidence            469999999 99999999999988864 699999987  455566776642    1234443   2466 8899999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHH
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  193 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R  193 (279)
                      +++|.|+++|++|.|++.+|.+++++++++|++++|+++++++|||++++++.+    ++.+++|++||+|+ |.+|+.|
T Consensus        78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r  153 (317)
T 2ewd_A           78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF----QKVSGLPHNKVCGMAGVLDSSR  153 (317)
T ss_dssp             ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH----HHhhCCCHHHEEeccCcHHHHH
Confidence            999999999999999999999999999999999999999999999999998654    56678999999999 6899999


Q ss_pred             HHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCc
Q 023671          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  263 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs  263 (279)
                      +++++++++|+++++++++|+|+||+ +++|+||++++++          .++.++++++.++++.++++++++. |+|+
T Consensus       154 ~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~  231 (317)
T 2ewd_A          154 FRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGT  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCc
Confidence            99999999999999999999999998 9999999997643          2567778899999999999999974 6889


Q ss_pred             chHHHHHHHHHHHh
Q 023671          264 ATLSMRLNLRMHAS  277 (279)
Q Consensus       264 ~~~s~A~a~~~~~~  277 (279)
                      ++|++|.+++++++
T Consensus       232 ~~~~~a~a~~~~~~  245 (317)
T 2ewd_A          232 AYFAPAAAAVKMAE  245 (317)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999999864

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=5.1e-35  Score=269.96  Aligned_cols=230  Identities=24%  Similarity=0.391  Sum_probs=191.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~-----~ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A  110 (279)
                      ++|||+|+||+|++|++++..|+.+++.     .+|+++|+++    ..+.++|+.|... ..+..+..+++++++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~-~~~~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccc-cccCCeEeccChHHHhCCC
Confidence            3579999999999999999999988865     4999999874    3567788887532 1122222234678899999


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeeecc
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGVTM  188 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~t~  188 (279)
                      |+||++||.+++++++|.+++..|+.+++++++.+++++ |+++++++|||+|.++++.    ++.+ ++|+.+++|.|.
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~----~~~~~~~~p~~~yg~tk  157 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA----YKNAPGLNPRNFTAMTR  157 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH----HHHcCCCChhheeccch
Confidence            999999999998899999999999999999999999998 9999999999999888654    4455 689999999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC-C----CCHHH-HHHHHHHHHhhHHHHHhhhcCC
Q 023671          189 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE-TEYLTNRIQNGGTEVVEAKAGA  261 (279)
Q Consensus       189 lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~-~~~i~~~v~~~~~~i~~~k~g~  261 (279)
                      +|+.|+++.+++++|+++..++ .+|+|+|++ +++|.|+++.+.+ +    ++++. ++++.++++++|++|++.| | 
T Consensus       158 l~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g-  234 (327)
T 1y7t_A          158 LDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G-  234 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S-
T ss_pred             HHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C-
Confidence            9999999999999999999999 469999998 8999999988754 1    23332 4799999999999999998 4 


Q ss_pred             CcchHHHHHHHHHHHh
Q 023671          262 GSATLSMRLNLRMHAS  277 (279)
Q Consensus       262 gs~~~s~A~a~~~~~~  277 (279)
                      +++++++|.|++++++
T Consensus       235 ~~~~~~~a~a~~~~~~  250 (327)
T 1y7t_A          235 ASSAASAANAAIEHIR  250 (327)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHH
Confidence            3455678889999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=3e-32  Score=249.61  Aligned_cols=225  Identities=23%  Similarity=0.400  Sum_probs=190.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC---CCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~---~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      ++|||+|||| |.+|+.++..|+..++.++|+|+|+++  +++.++|+.+...   ...+..   +++ ++++++||+||
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~-~~~~~~aD~Vi   80 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG---SDD-PEICRDADMVV   80 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE---ESC-GGGGTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe---CCC-HHHhCCCCEEE
Confidence            3579999999 999999999999999888999999986  4555677666431   123332   235 47899999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHH
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  193 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R  193 (279)
                      ++++.++++|++|.|++.+|+++++++++.+++++|++++++++||++.+++++    ++.+++|++||+|. |.+|+.|
T Consensus        81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~----~~~~~~~~~~vig~~~~l~~~r  156 (319)
T 1lld_A           81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGSGTNLDSAR  156 (319)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH----HHhcCCCHHHEeeccccHhHHH
Confidence            999999999999999999999999999999999999999999999999998654    55568999999999 8999999


Q ss_pred             HHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----------C--CCHHHHHHHHHHHHhhHHHHHhhhcC
Q 023671          194 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------S--FTQEETEYLTNRIQNGGTEVVEAKAG  260 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----------~--~~~~~~~~i~~~v~~~~~~i~~~k~g  260 (279)
                      ++..+++++++++.+++.+++|+||+ +++|+||++.+++           .  .+++.++++.+++++.+++|++.|  
T Consensus       157 ~~~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~--  233 (319)
T 1lld_A          157 LRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK--  233 (319)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSC--
T ss_pred             HHHHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCC--
Confidence            99999999999999999999999998 8999999987642           1  233347899999999999999865  


Q ss_pred             CCcchHHHHHHHHHHHh
Q 023671          261 AGSATLSMRLNLRMHAS  277 (279)
Q Consensus       261 ~gs~~~s~A~a~~~~~~  277 (279)
                       |++.+++|.+.+++++
T Consensus       234 -G~~~~~~a~~~~sm~~  249 (319)
T 1lld_A          234 -GATNYAIGMSGVDIIE  249 (319)
T ss_dssp             -CSCCHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHH
Confidence             5677888888887764

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=1.3e-33  Score=268.82  Aligned_cols=219  Identities=16%  Similarity=0.137  Sum_probs=166.4

Q ss_pred             CcEEEEEcCCCchHHHH--HHHHHh--CCC-CcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCC
Q 023671           41 GFKVAILGAAGGIGQPL--AMLMKI--NPL-VSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~l--a~~L~~--~~~-~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~AD  111 (279)
                      ++||+|||| |++ .+.  +..|+.  .++ ++||+|+|+++  +++ +.|+.+...  ..+++.   ++|++++++|||
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~~~v~~---t~d~~~al~~AD   75 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVLI---SDTFEGAVVDAK   75 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEEE---CSSHHHHHTTCS
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCCeEEEE---eCCHHHHhCCCC
Confidence            479999999 887 333  234555  676 89999999987  333 455555221  133333   468889999999


Q ss_pred             EEEEccCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHH
Q 023671          112 LVIIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d--------------------~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~  171 (279)
                      +||+++|++++++++|++                    ++.+|+++++++++.|+++| +||+|++|||+|++|+.+   
T Consensus        76 ~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~---  151 (417)
T 1up7_A           76 YVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFV---  151 (417)
T ss_dssp             EEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHH---
T ss_pred             EEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHH---
Confidence            999999999988888742                    25899999999999999999 999999999999998654   


Q ss_pred             HHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeec-----------CCCCceeeeecccC---CCCC----
Q 023671          172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQV---KPPC----  233 (279)
Q Consensus       172 ~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViG-----------ehg~~~~vp~~S~~---~v~~----  233 (279)
                       ++.+  |++||||+|+.- .|+++++|+.+|++|++|+++++|           +||+ +++|.||..   ++.+    
T Consensus       152 -~k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~  226 (417)
T 1up7_A          152 -RNYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDE  226 (417)
T ss_dssp             -HHTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTT
T ss_pred             -HHhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCC
Confidence             6654  778999997642 499999999999999999999999           9998 999999985   3321    


Q ss_pred             CC---------------------CHHHHHHH---------HHHHHhhHHHHH--------hhhcCCCcchHHHHHHHHHH
Q 023671          234 SF---------------------TQEETEYL---------TNRIQNGGTEVV--------EAKAGAGSATLSMRLNLRMH  275 (279)
Q Consensus       234 ~~---------------------~~~~~~~i---------~~~v~~~~~~i~--------~~k~g~gs~~~s~A~a~~~~  275 (279)
                      ++                     +++.++++         .+++++++++++        ++. ++|++++  |.+++++
T Consensus       227 ~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~-~kg~t~~--~~~a~~i  303 (417)
T 1up7_A          227 DFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELT-KRGGSMY--STAAAHL  303 (417)
T ss_dssp             SCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGG-GSTTTTH--HHHHHHH
T ss_pred             chHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhh-hcCCcHH--HHHHHHH
Confidence            23                     12333444         578889999999        332 4566644  6677776


Q ss_pred             Hh
Q 023671          276 AS  277 (279)
Q Consensus       276 ~~  277 (279)
                      ++
T Consensus       304 i~  305 (417)
T 1up7_A          304 IR  305 (417)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=7.4e-33  Score=266.04  Aligned_cols=177  Identities=18%  Similarity=0.223  Sum_probs=145.0

Q ss_pred             CcEEEEEcCCCch-HHHHHHHHHh--CCC-CcEEEEEeCCC--ch--h---HHhhhh-cccCCCeEEEEeCCCCHHhhhC
Q 023671           41 GFKVAILGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TP--G---VTADIS-HMDTGAVVRGFLGQPQLENALT  108 (279)
Q Consensus        41 ~~KI~IIGA~G~V-G~~la~~L~~--~~~-~~ev~L~D~~~--~~--g---~~~DL~-~~~~~~~v~~~~~~~d~~eal~  108 (279)
                      ++||+|||| |++ |..++..|+.  .++ .+||+|+|+++  .+  +   ...++. +.....+++.   ++|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            469999999 998 7777777776  566 78999999987  32  2   112332 1122334443   358889999


Q ss_pred             CCCEEEEccCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHH
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  168 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~--------------------~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~  168 (279)
                      |||+||+++|+++++|++|+++                    +.+|+++++++++.|+++||+||+|++|||+|++|+.+
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~  162 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  162 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9999999999999888888644                    78999999999999999999999999999999998654


Q ss_pred             HHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeec-----------CCCCceeeeecccC
Q 023671          169 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQV  229 (279)
Q Consensus       169 ~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViG-----------ehg~~~~vp~~S~~  229 (279)
                          ++.+  |++||||+|+.. .|+++++|+.+|++|++|+++++|           +||+ +++|.||..
T Consensus       163 ----~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~  226 (450)
T 1s6y_A          163 ----LRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDL  226 (450)
T ss_dssp             ----HHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHH
T ss_pred             ----HHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHH
Confidence                6664  778999998654 499999999999999999999999           9998 999999974

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=99.97  E-value=4.7e-31  Score=254.65  Aligned_cols=176  Identities=20%  Similarity=0.298  Sum_probs=145.1

Q ss_pred             CcEEEEEcCCCch-HHHHHHHHHhC--CC-CcEEEEEeCCC--chhHHhhhhcc-----cCCCeEEEEeCCCCHHhhhCC
Q 023671           41 GFKVAILGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--TPGVTADISHM-----DTGAVVRGFLGQPQLENALTG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~V-G~~la~~L~~~--~~-~~ev~L~D~~~--~~g~~~DL~~~-----~~~~~v~~~~~~~d~~eal~~  109 (279)
                      ++||+|||| |++ |..++..|+.+  ++ ..||+|+|+++  +++. .|+.+.     ....+++.   ++|++++++|
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~---t~D~~eal~~  102 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI-AGACDVFIREKAPDIEFAA---TTDPEEAFTD  102 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH-HHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHH-HHHHHHHhccCCCCCEEEE---ECCHHHHHcC
Confidence            459999999 998 55567777776  77 78999999987  3332 344332     12345554   3588899999


Q ss_pred             CCEEEEccCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHH
Q 023671          110 MDLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  169 (279)
Q Consensus       110 ADiVIitag~~~k~g~~r~d~--------------------~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~  169 (279)
                      ||+||+++|++++++++|+++                    +.+|+++++++++.|+++||+||+|++|||+|++|+.+ 
T Consensus       103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~-  181 (472)
T 1u8x_X          103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT-  181 (472)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH-
T ss_pred             CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-
Confidence            999999999988888877444                    78999999999999999999999999999999998654 


Q ss_pred             HHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCC-CCCcceeec-----------C-CCCceeeeecccC
Q 023671          170 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-----------G-HAGVTILPLLSQV  229 (279)
Q Consensus       170 ~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~-~~V~~~ViG-----------e-hg~~~~vp~~S~~  229 (279)
                         ++.+  |++||||+|+.. .|+++++|+.+|++| ++|+++|+|           + ||+ +++|.||..
T Consensus       182 ---~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~  247 (472)
T 1u8x_X          182 ---RRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEH  247 (472)
T ss_dssp             ---HHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHH
T ss_pred             ---HHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHH
Confidence               6665  888999998653 499999999999998 999999999           8 998 899999973

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.93  E-value=1.5e-26  Score=223.29  Aligned_cols=165  Identities=24%  Similarity=0.255  Sum_probs=126.9

Q ss_pred             CcEEEEEcCCCchHHHH--HHHHHh-CCC-CcEEEEEeCCC--chhHHhhhhc-----ccCCCeEEEEeCCCCHHhhhCC
Q 023671           41 GFKVAILGAAGGIGQPL--AMLMKI-NPL-VSVLHLYDVVN--TPGVTADISH-----MDTGAVVRGFLGQPQLENALTG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~l--a~~L~~-~~~-~~ev~L~D~~~--~~g~~~DL~~-----~~~~~~v~~~~~~~d~~eal~~  109 (279)
                      ++||+|||| |+||++.  +..|++ .++ ..||+|+|+++  +++ ..++.+     .....+++.   ++|++++++|
T Consensus         3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~d   77 (480)
T 1obb_A            3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVIID   77 (480)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHTT
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhCC
Confidence            579999999 9987655  557764 333 56999999987  333 222222     112234443   4588789999


Q ss_pred             CCEEEEccCC------------CCCCCCch--hh------------HHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          110 MDLVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       110 ADiVIitag~------------~~k~g~~r--~d------------~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      ||+||+++|+            |.|+|..+  .|            ++.+|+++++++++.|+++||+||+|++|||+|+
T Consensus        78 AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi  157 (480)
T 1obb_A           78 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFE  157 (480)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHH
T ss_pred             CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Confidence            9999999986            44556544  33            4789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeecCCCC
Q 023671          164 TVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG  219 (279)
Q Consensus       164 ~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~  219 (279)
                      +|+++    ++   +|++||||+|+++. ++++++ +.+|++|++|+++|+|-+|-
T Consensus       158 ~t~~~----~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~  204 (480)
T 1obb_A          158 GTTLV----TR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHG  204 (480)
T ss_dssp             HHHHH----HH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTE
T ss_pred             HHHHH----HH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecch
Confidence            98654    54   78899999975433 378999 99999999999999996553

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.92  E-value=2.8e-25  Score=212.95  Aligned_cols=177  Identities=23%  Similarity=0.326  Sum_probs=136.9

Q ss_pred             CCcEEEEEcCCCchH--HHHHHHHHhCC-CCcEEEEEeCCC--ch--hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCE
Q 023671           40 AGFKVAILGAAGGIG--QPLAMLMKINP-LVSVLHLYDVVN--TP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG--~~la~~L~~~~-~~~ev~L~D~~~--~~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADi  112 (279)
                      +.+||+|||| |++|  ..++..|+... +..+|+|+|+++  ++  ....+....   ...+.. .++|+++|++|||+
T Consensus         4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~---~~~~I~-~TtD~~eAl~dADf   78 (450)
T 3fef_A            4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN---GRWRYE-AVSTLKKALSAADI   78 (450)
T ss_dssp             CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT---SCEEEE-EESSHHHHHTTCSE
T ss_pred             CCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc---cCCeEE-EECCHHHHhcCCCE
Confidence            4579999999 9985  56776666533 345999999986  21  112221111   223322 25688899999999


Q ss_pred             EEEccC------------CCCCCCCchh--hHH--------HhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHH
Q 023671          113 VIIPAG------------VPRKPGMTRD--DLF--------NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  170 (279)
Q Consensus       113 VIitag------------~~~k~g~~r~--d~~--------~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~  170 (279)
                      ||+++.            +|+|+|+.|.  |..        .+|+++++++++.|+++||+||+|++|||+|++|+.+  
T Consensus        79 VI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~--  156 (450)
T 3fef_A           79 VIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL--  156 (450)
T ss_dssp             EEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH--
T ss_pred             EEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH--
Confidence            999985            5888888765  543        4999999999999999999999999999999998654  


Q ss_pred             HHHHhCCCCCCCeeeecchhHHHHHHHHHHHc----C---CCCCCCcceeec-CCCCceeeeecccCCCCC
Q 023671          171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL----G---LDPRDVDVPVVG-GHAGVTILPLLSQVKPPC  233 (279)
Q Consensus       171 ~~~~~~~~~~~kViG~t~lds~R~~~~la~~l----~---v~~~~V~~~ViG-ehg~~~~vp~~S~~~v~~  233 (279)
                        ++.  +|+.||||+|+.. .++++.+|+.|    |   +++++|+..++| +|     +.+|++.++.+
T Consensus       157 --~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH-----~~w~~~~~~~G  217 (450)
T 3fef_A          157 --YKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH-----FTWITKASYRH  217 (450)
T ss_dssp             --HHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT-----EEEEEEEEETT
T ss_pred             --HHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC-----eEeEEEEEECC
Confidence              554  7889999999874 78999999999    5   779999999999 66     56788777643

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.92  E-value=9.6e-26  Score=218.06  Aligned_cols=175  Identities=23%  Similarity=0.224  Sum_probs=132.5

Q ss_pred             cEEEEEcCCCchHHHHH--HHHHhCC----CCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCC
Q 023671           42 FKVAILGAAGGIGQPLA--MLMKINP----LVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la--~~L~~~~----~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~AD  111 (279)
                      |||+|||| |++|.+..  ..++...    ..+||+|+|+++  +++...++.+...  ...++.. .++|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~-~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVV-KTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEE-EESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEE-EeCCHHHHhCCCC
Confidence            69999999 99998743  3444432    356999999998  5566666665431  2233332 2468899999999


Q ss_pred             EEEEccCC-------------------CCCCCCchhhHH---------------HhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671          112 LVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus       112 iVIitag~-------------------~~k~g~~r~d~~---------------~~N~~i~~~i~~~I~~~~p~a~viv~  157 (279)
                      +||+++|.                   |+|+|++|.++.               .+|++++.++++.|+++||+||+|++
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999975                   346777665543               25899999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeeccc
Q 023671          158 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQ  228 (279)
Q Consensus       158 TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~  228 (279)
                      |||++++|+.+    ++.++   .|++|+|+--..  ...+++.||+++++|+..+.|.||. +.+..|+.
T Consensus       159 tNP~~i~t~a~----~~~~~---~k~vGlC~~~~~--~~~~~~~Lg~~~~~v~~~~~GlNH~-~w~~~~~~  219 (477)
T 3u95_A          159 ANPVFEITQAV----RRWTG---ANIIGFCHGVAG--VYEVFERLGLDPEEVDWQVAGVNHG-IWLNRFRY  219 (477)
T ss_dssp             SSCHHHHHHHH----HHHHC---CCEEEECCGGGH--HHHHHHHTTCCGGGEEEEEEEETTE-EEEEEEEE
T ss_pred             cChHHHHHHHH----HHhCC---CCeEEECCCHHH--HHHHHHHhCCCHHHcEEEEeecCCC-eeeeeeee
Confidence            99999999654    55444   589999964333  3457788999999999999999997 77666654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.89  E-value=1.9e-09  Score=99.01  Aligned_cols=119  Identities=15%  Similarity=0.179  Sum_probs=84.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--H----hhhhcccC----------CCeEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T----ADISHMDT----------GAVVRGFLGQP  101 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~----~DL~~~~~----------~~~v~~~~~~~  101 (279)
                      ..||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  .+.  .    ..+.....          ..++..   ++
T Consensus         6 ~~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~---~~   79 (319)
T 3ado_A            6 AGDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS---CT   79 (319)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE---EC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc---cc
Confidence            359999999 9999999999999999  999999986 1  111  0    11111100          012333   45


Q ss_pred             CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCCC
Q 023671          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (279)
Q Consensus       102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~  180 (279)
                      |+.+++++||+||.++              .+|.++.+++..+|++++| ++++  .||.+.+...-   + ..... .|
T Consensus        80 ~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~is~---i-a~~~~-~p  138 (319)
T 3ado_A           80 NLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLLPSK---L-FTGLA-HV  138 (319)
T ss_dssp             CHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSCCHHH---H-HTTCT-TG
T ss_pred             chHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhccchh---h-hhhcc-CC
Confidence            8888999999999986              3678999999999999995 6644  79998865432   2 22333 35


Q ss_pred             CCeeee
Q 023671          181 KKLLGV  186 (279)
Q Consensus       181 ~kViG~  186 (279)
                      +|++|+
T Consensus       139 ~r~ig~  144 (319)
T 3ado_A          139 KQCIVA  144 (319)
T ss_dssp             GGEEEE
T ss_pred             CcEEEe
Confidence            788886

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.81  E-value=3.4e-08  Score=89.67  Aligned_cols=186  Identities=12%  Similarity=0.046  Sum_probs=100.5

Q ss_pred             hccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEE
Q 023671           16 AHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR   95 (279)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~   95 (279)
                      .|--|-+.||..++         .++|||.|+||+|++|++++..|+..|..-+|+.+|..........+........+.
T Consensus         8 ~~~~~~~~~n~~~~---------~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~   78 (346)
T 4egb_A            8 SSGVDLGTENLYFQ---------SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYY   78 (346)
T ss_dssp             -------------------------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEE
T ss_pred             ccccccCccccccc---------cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeE
Confidence            34455667777664         245799999999999999999999988444888888765222222222221123344


Q ss_pred             EEeC-CC---CHHhhhCC--CCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC-------
Q 023671           96 GFLG-QP---QLENALTG--MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-------  160 (279)
Q Consensus        96 ~~~~-~~---d~~eal~~--ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP-------  160 (279)
                      .+.+ -.   ++.+++++  +|+||++|+.....  .....+.+..|+.....+++.+.+.....+|.+.|--       
T Consensus        79 ~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~  158 (346)
T 4egb_A           79 FVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGK  158 (346)
T ss_dssp             EEECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCS
T ss_pred             EEEcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCc
Confidence            3321 11   23455666  99999999864321  1234567788999999999999987654444443310       


Q ss_pred             CCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          161 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       161 vd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      ...++        ......+...+|.+.....++-..+++..|++..-++ +.|+|...
T Consensus       159 ~~~~~--------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          159 TGRFT--------EETPLAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             SCCBC--------TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             CCCcC--------CCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence            00111        0111223345555544444555556666777766666 56888654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.80  E-value=1.7e-08  Score=91.84  Aligned_cols=185  Identities=15%  Similarity=0.041  Sum_probs=109.4

Q ss_pred             ccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC---CCeEEEE
Q 023671           23 LQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGF   97 (279)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~---~~~v~~~   97 (279)
                      --++..+.....+.  .+++||.|+||+|++|++++..|+..|+  +|+.+|+..  ......++.....   ...+..+
T Consensus         9 ~~~~~~~~~~~~~~--~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (351)
T 3ruf_A            9 IYMSRYEEITQQLI--FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFI   84 (351)
T ss_dssp             -CCHHHHHHHHHHH--HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEE
T ss_pred             HHHHHHhhHHhhCC--CCCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEE
Confidence            33344444443443  4567999999999999999999999997  999999865  2222222222100   0223322


Q ss_pred             eC----CCCHHhhhCCCCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC-----C-chH
Q 023671           98 LG----QPQLENALTGMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-----N-STV  165 (279)
Q Consensus        98 ~~----~~d~~eal~~ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv-----d-~~t  165 (279)
                      .+    ..++.++++++|+||++|+.....  ..+..+.+..|+.....+++.+.+.....+|.+.|--+     + .++
T Consensus        85 ~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~  164 (351)
T 3ruf_A           85 EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKV  164 (351)
T ss_dssp             ECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC
T ss_pred             EccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCc
Confidence            11    123456788999999999854211  11234567889999999999999876554444433111     0 000


Q ss_pred             HHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671          166 PIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  219 (279)
Q Consensus       166 ~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~  219 (279)
                              +..-..+...+|.+.+...++-..+++..|++..-++ +.|+|....
T Consensus       165 --------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~  211 (351)
T 3ruf_A          165 --------EENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQD  211 (351)
T ss_dssp             --------TTCCCCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCC
T ss_pred             --------cCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCC
Confidence                    0001122344555555455555566677788777776 568887543

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.76  E-value=1e-07  Score=85.45  Aligned_cols=165  Identities=15%  Similarity=0.122  Sum_probs=97.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~  119 (279)
                      +|||.|+||+|++|++++..|+..|+  +|+.+++++....   +...   ..+.. .. ..++.++++++|+||++|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~---~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDY---EYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CC---EEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCce---EEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            46999999999999999999999998  9999998742111   1110   00110 11 12356778999999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHH
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  199 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la  199 (279)
                      ....  +..+.+..|+...+.+++.+.+.....+|.+.|.-+  ...--...+.+.....+...+|.+.+...++-..++
T Consensus        73 ~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~v--yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  148 (311)
T 3m2p_A           73 RGSQ--GKISEFHDNEILTQNLYDACYENNISNIVYASTISA--YSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYS  148 (311)
T ss_dssp             CCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG--CCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHH--hCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            5432  345567889999999999999877554444443111  000000000000111223344444444445555555


Q ss_pred             HHcCCCCCCCc-ceeecCCC
Q 023671          200 EVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       200 ~~l~v~~~~V~-~~ViGehg  218 (279)
                      +..+++..-++ +.++|...
T Consensus       149 ~~~g~~~~ilRp~~v~G~~~  168 (311)
T 3m2p_A          149 RKKGLCIKNLRFAHLYGFNE  168 (311)
T ss_dssp             HHSCCEEEEEEECEEECSCC
T ss_pred             HHcCCCEEEEeeCceeCcCC
Confidence            66676665565 55777654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.75  E-value=2.7e-08  Score=90.39  Aligned_cols=153  Identities=15%  Similarity=0.177  Sum_probs=97.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh----HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g----~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +++||.|+||+|++|++++..|+..|+  +|+++|++....    ...|+.+            ..++.++++++|+||+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~Dl~d------------~~~~~~~~~~~d~vih   83 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSGTGGEEVVGSLED------------GQALSDAIMGVSAVLH   83 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCSSCCSEEESCTTC------------HHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCCCccEEecCcCC------------HHHHHHHHhCCCEEEE
Confidence            456899999999999999999999997  999999875220    0011111            1234567899999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC--------CCCchHHHHHHHHHHhCCCCCCCeeeec
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--------PVNSTVPIAAEVFKKAGTYDPKKLLGVT  187 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN--------Pvd~~t~~~~~~~~~~~~~~~~kViG~t  187 (279)
                      +|+..........+.+..|+.....+++.+.+.....+|.+.|-        +...++        .....++...+|.+
T Consensus        84 ~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~--------E~~~~~~~~~Y~~s  155 (347)
T 4id9_A           84 LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVT--------EDHPLCPNSPYGLT  155 (347)
T ss_dssp             CCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBC--------TTSCCCCCSHHHHH
T ss_pred             CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcC--------CCCCCCCCChHHHH
Confidence            99865433333367788899999999999988665545444441        111111        11123344455555


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCc-ceee
Q 023671          188 MLDVVRANTFVAEVLGLDPRDVD-VPVV  214 (279)
Q Consensus       188 ~lds~R~~~~la~~l~v~~~~V~-~~Vi  214 (279)
                      .+...++-...++..+++..-++ +.++
T Consensus       156 K~~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          156 KLLGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHHHhcCCceEEEccceEe
Confidence            55455555556666677666665 4567

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.68  E-value=7.6e-08  Score=97.37  Aligned_cols=118  Identities=14%  Similarity=0.201  Sum_probs=83.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hh-h---------hhccc-CCCeEEEEeCCCCHH
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA-D---------ISHMD-TGAVVRGFLGQPQLE  104 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~-D---------L~~~~-~~~~v~~~~~~~d~~  104 (279)
                      .+||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  .+.  .. -         +.... ....+..   +++ .
T Consensus       316 i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~-~  388 (742)
T 3zwc_A          316 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSS-T  388 (742)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---ESC-G
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---cCc-H
Confidence            469999999 9999999999999999  999999986 1  111  00 0         01111 1223333   345 4


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCCCCCe
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  183 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kV  183 (279)
                      +++++||+||.++              .+|.++.+++.+++++++| ++++  .||.+.+-..-+    ..... .|+|+
T Consensus       389 ~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~i~~i----a~~~~-~p~r~  447 (742)
T 3zwc_A          389 KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDI----ASSTD-RPQLV  447 (742)
T ss_dssp             GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHH----HTTSS-CGGGE
T ss_pred             HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCChHHH----HhhcC-Ccccc
Confidence            7799999999986              3678999999999999984 6644  799988654222    23333 35789


Q ss_pred             eee
Q 023671          184 LGV  186 (279)
Q Consensus       184 iG~  186 (279)
                      +|+
T Consensus       448 ig~  450 (742)
T 3zwc_A          448 IGT  450 (742)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            986

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.66  E-value=1.1e-07  Score=85.90  Aligned_cols=110  Identities=20%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiVIi  115 (279)
                      ++|||.|+||+|++|++++..|+..|+  +|+++|++....  .++.+.    .+..+.+    ..++.++++++|+||+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQI--QRLAYL----EPECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCG--GGGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhh--hhhccC----CeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            346999999999999999999999997  999999876211  112211    1121111    1134567899999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +|+..........+.+..|+.....+++.+.+..... +|++|
T Consensus        84 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~v~~S  125 (342)
T 2x4g_A           84 SAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPR-ILYVG  125 (342)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHHTCSC-EEEEC
T ss_pred             CCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEC
Confidence            9986432222345677889999999999999876444 44444

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.63  E-value=2.1e-07  Score=83.97  Aligned_cols=170  Identities=14%  Similarity=0.041  Sum_probs=99.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC---HHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~~ADiVIit  116 (279)
                      .|||.|+||+|++|++++..|+..|...+|+.+|+....+....+........+..+.+ -.|   +.+++.++|+||++
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            46899999999999999999988762239999998641111111111111123333221 122   34556799999999


Q ss_pred             cCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC-------CchHHHHHHHHHHhCCCCCCCeeeec
Q 023671          117 AGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-------NSTVPIAAEVFKKAGTYDPKKLLGVT  187 (279)
Q Consensus       117 ag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv-------d~~t~~~~~~~~~~~~~~~~kViG~t  187 (279)
                      ||.....  ..+..+.+..|+.....+++.+.+......+|++|...       ..++        +....++...+|.+
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~--------E~~~~~~~~~Y~~s  154 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFT--------ENDRLMPSSPYSAT  154 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBC--------TTBCCCCCSHHHHH
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcC--------CCCCCCCCCccHHH
Confidence            9864210  01234567889999999999999885434555554210       0000        00123333445555


Q ss_pred             chhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          188 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       188 ~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .....++-..+++.++++..-++ +.|+|...
T Consensus       155 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~  186 (336)
T 2hun_A          155 KAASDMLVLGWTRTYNLNASITRCTNNYGPYQ  186 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCC
Confidence            44444555556666776655555 55777653

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.62  E-value=2.7e-07  Score=82.32  Aligned_cols=160  Identities=18%  Similarity=0.136  Sum_probs=98.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC---CCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~---~~d~~eal~~ADiVIitag  118 (279)
                      |||.|+||+|++|++++..|+..|+  +|+++|++.....  +..+    ..+..+..   ..++.+++++ |+||++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~----~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVN----PSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSC----TTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcC----CCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            5899999999999999999999998  9999998652111  0111    11111110   0113455666 99999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC------CchHHHHHHHHHHhCCCCCCCeeeecchh
Q 023671          119 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVFKKAGTYDPKKLLGVTMLD  190 (279)
Q Consensus       119 ~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv------d~~t~~~~~~~~~~~~~~~~kViG~t~ld  190 (279)
                      .+...  ..+....+..|+.....+++.+.+.....+|.+.|.-+      ..++        .....++...+|.+...
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~--------e~~~~~p~~~Y~~sK~~  143 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTP--------EEEPYKPISVYGAAKAA  143 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHHHHHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCC--------CCCCCCCCChHHHHHHH
Confidence            64321  12345567889999999999998876554444444110      0000        00123334455555554


Q ss_pred             HHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          191 VVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       191 s~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      ..++-..+++.+|++..-++ +.++|...
T Consensus       144 ~e~~~~~~~~~~g~~~~~lrp~~v~g~~~  172 (312)
T 3ko8_A          144 GEVMCATYARLFGVRCLAVRYANVVGPRL  172 (312)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHhCCCEEEEeeccccCcCC
Confidence            55565666777787766666 56888753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.62  E-value=7.7e-08  Score=86.24  Aligned_cols=100  Identities=17%  Similarity=0.240  Sum_probs=67.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhc--------------cc---CCCeEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH--------------MD---TGAVVRGFLGQP  101 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~--------------~~---~~~~v~~~~~~~  101 (279)
                      ++||+|||+ |.+|+.+|..++..|+  +|+++|+++  .......+.+              ..   ....+..   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            469999998 9999999999999998  999999986  1111111100              00   0012332   34


Q ss_pred             CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                      ++.+++++||+||++..              .+.+..+++.+.+.+.+ |++++  +||...
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~  123 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSST  123 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSS
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence            77778999999999873              23456777778888877 45655  344444

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=1e-07  Score=81.40  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=70.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiVIit  116 (279)
                      +|||.|+||+|++|++++..|+..|+  +|+++++++....  ++     ...+..+.+    ..++.++++++|+||++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIK--IE-----NEHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCC--CC-----CTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccch--hc-----cCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            57999999999999999999999997  9999998752111  01     012222211    12345678999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                      +|....    ..+.+..|+...+.+++.+.+.....+|.+
T Consensus        75 a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~  110 (227)
T 3dhn_A           75 FNPGWN----NPDIYDETIKVYLTIIDGVKKAGVNRFLMV  110 (227)
T ss_dssp             CCC----------CCSHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            976421    223567799999999999998765544443

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.60  E-value=7.4e-08  Score=85.00  Aligned_cols=105  Identities=16%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADiVIit  116 (279)
                      +++|.|+||+|++|+.++..|+..|.  +|++.|+++....         ...+..+.    ...++.+++++.|+||++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            45899999999999999999999887  9999998762111         01111111    112345678899999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ||....  ....+.+..|+.....+++.+.+.....+|.+.|
T Consensus        72 Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS  111 (267)
T 3rft_A           72 GGISVE--KPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS  111 (267)
T ss_dssp             CSCCSC--CCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCcCc--CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            987422  2345677889999999999998776544444444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.58  E-value=3.1e-07  Score=79.10  Aligned_cols=111  Identities=16%  Similarity=0.125  Sum_probs=76.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCC-eEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~-~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +.|||.|+||+|++|++++..|+..|+  +|+++++++....  .+.+..  . .+....-+.++.+++.++|+||++||
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~--~~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERG--ASDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTT--CSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCC--CceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            356999999999999999999999998  9999998762211  111110  1 11110001345678999999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ....  ......+..|+.....+++.+++..... ||++|.
T Consensus        94 ~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~-iv~~SS  131 (236)
T 3e8x_A           94 SGPH--TGADKTILIDLWGAIKTIQEAEKRGIKR-FIMVSS  131 (236)
T ss_dssp             CCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCCE-EEEECC
T ss_pred             CCCC--CCccccchhhHHHHHHHHHHHHHcCCCE-EEEEec
Confidence            6532  2345667789999999999998876544 444443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.56  E-value=8.8e-07  Score=79.66  Aligned_cols=117  Identities=13%  Similarity=-0.013  Sum_probs=76.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHhhhhcccCCCeEEEE-e----CCCCHHhhhCCC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGF-L----GQPQLENALTGM  110 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g--~~~DL~~~~~~~~v~~~-~----~~~d~~eal~~A  110 (279)
                      +.+.++|.|+||+|++|++++..|+..|+  +|+++|++....  ....+.... ...+..+ .    ...++.++++++
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~   84 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCC
Confidence            44567999999999999999999999997  999999865211  111111100 0122222 1    112345667799


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |+||++|+.... +.+..+.+..|+.....+++.+.+......+|++|
T Consensus        85 d~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~S  131 (342)
T 1y1p_A           85 AGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             SEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            999999986532 23455678889999999999887533234555554

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.55  E-value=4.2e-07  Score=82.35  Aligned_cols=165  Identities=15%  Similarity=0.101  Sum_probs=97.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CC---CHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~--~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~---d~~eal~~ADiVI  114 (279)
                      |+||.|+||+|++|++++..|+..  ++  +|+++|++...+....+.... ...+..+.+ -+   ++.++++++|+||
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   80 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIV   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhc-cCCeEEEECCCCCHHHHHHHhhcCCEEE
Confidence            569999999999999999999887  56  999999864111111111110 122332211 11   2456788999999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC-------------------CchHHHHHHHHH
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-------------------NSTVPIAAEVFK  173 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv-------------------d~~t~~~~~~~~  173 (279)
                      ++|+.....  ..+..+.+..|+.....+++.+.+...  .+|++|...                   ..++        
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~--------  150 (348)
T 1oc2_A           81 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFT--------  150 (348)
T ss_dssp             ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBC--------
T ss_pred             ECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcC--------
Confidence            999865311  012345678899999999999988754  455444210                   0110        


Q ss_pred             HhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          174 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       174 ~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      +....++...+|.+.....++-..+++.+|++..-++ +.++|...
T Consensus       151 E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~  196 (348)
T 1oc2_A          151 AETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  196 (348)
T ss_dssp             TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             CCCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCC
Confidence            0012233344555544444555555666676665555 55777653

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.55  E-value=4.2e-07  Score=81.91  Aligned_cols=115  Identities=15%  Similarity=0.002  Sum_probs=73.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHhhhhcccCCCeEEEEeC-CCC---HHhhhCC--
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLG-QPQ---LENALTG--  109 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~~--  109 (279)
                      ++++||.|+||+|++|++++..|+..|+  +|+++|++...   ....++..   ...+..+.+ -.|   +.+++++  
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~   86 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKAQ   86 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHHC
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHcC
Confidence            5678999999999999999999999997  99999987521   11112211   122332211 112   3345564  


Q ss_pred             CCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          110 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       110 ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .|+||++|+.....  ..+..+.+..|+.....+++.+.+......+|++|
T Consensus        87 ~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  137 (335)
T 1rpn_A           87 PQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  137 (335)
T ss_dssp             CSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            59999999864311  12345677889999999999998876434455444

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.55  E-value=7.3e-07  Score=80.49  Aligned_cols=166  Identities=17%  Similarity=0.165  Sum_probs=95.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC---C---CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CC---CHHhhhCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN---P---LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTGMD  111 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~---~---~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~---d~~eal~~AD  111 (279)
                      |||.|+||+|++|++++..|+.+   +   +  +|+++|++...+....+........+..+.+ -+   ++.+++.++|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   78 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVD   78 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCC
Confidence            58999999999999999999885   5   5  9999998641111111111111122332221 11   2345678999


Q ss_pred             EEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC------CchHHHHHHHHHHhCCCCCCCe
Q 023671          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVFKKAGTYDPKKL  183 (279)
Q Consensus       112 iVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv------d~~t~~~~~~~~~~~~~~~~kV  183 (279)
                      +||++|+.....  ..+..+.+..|+.....+++.+.+.....+|.+.|.-+      ..++        .....++...
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~--------E~~~~~~~~~  150 (337)
T 1r6d_A           79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWT--------ESSPLEPNSP  150 (337)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBC--------TTSCCCCCSH
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCC--------CCCCCCCCCc
Confidence            999999864211  01234567889999999999998875444443333100      0010        0011223344


Q ss_pred             eeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          184 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       184 iG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                      +|.+.....++-..+++..+++..-++ +.++|..
T Consensus       151 Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          151 YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             hHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            454444444454455566677665555 5577764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.52  E-value=5.5e-07  Score=81.37  Aligned_cols=167  Identities=15%  Similarity=0.058  Sum_probs=97.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC----CCCHHhhhC--CCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENALT--GMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~--~AD  111 (279)
                      ++|+|.|+||+|++|++++..|+..|+  +|+++|++.  ......++.... ...+..+..    ..++.++++  +.|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCc
Confidence            346999999999999999999999998  999999875  222222222110 111222111    112344555  899


Q ss_pred             EEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC-----CCC-chHHHHHHHHHHhCCCCCCCe
Q 023671          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-----PVN-STVPIAAEVFKKAGTYDPKKL  183 (279)
Q Consensus       112 iVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN-----Pvd-~~t~~~~~~~~~~~~~~~~kV  183 (279)
                      +||++|+.....  .....+.+..|+.....+++.+.+.....+|.+.|.     |.+ .++        .....++...
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~--------e~~~~~~~~~  152 (341)
T 3enk_A           81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPID--------ETFPLSATNP  152 (341)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBC--------TTSCCBCSSH
T ss_pred             EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCC--------CCCCCCCCCh
Confidence            999999864211  112345678899999999999988765544444331     100 010        0011223345


Q ss_pred             eeecchhHHHHHHHHHHHcC-CCCCCCc-ceeecCC
Q 023671          184 LGVTMLDVVRANTFVAEVLG-LDPRDVD-VPVVGGH  217 (279)
Q Consensus       184 iG~t~lds~R~~~~la~~l~-v~~~~V~-~~ViGeh  217 (279)
                      +|.+.....++-..+++.++ ++..-++ +.|+|.+
T Consensus       153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          153 YGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAH  188 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred             hHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence            55554444555555666664 4444444 4577765

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.52  E-value=6.8e-07  Score=79.98  Aligned_cols=165  Identities=15%  Similarity=0.119  Sum_probs=93.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEE----eCCCCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGF----LGQPQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~----~~~~d~~eal~~ADiVIi  115 (279)
                      |+||.|+||+|++|++++..|+..|   +++.++... .....  + .    ..+..+    .. .++.++++++|+||+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~~--~-~----~~~~~~~~Dl~~-~~~~~~~~~~d~vih   69 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEEF--V-N----EAARLVKADLAA-DDIKDYLKGAEEVWH   69 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGGG--S-C----TTEEEECCCTTT-SCCHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChhh--c-C----CCcEEEECcCCh-HHHHHHhcCCCEEEE
Confidence            4589999999999999999999888   344444433 11110  0 0    111111    11 345677899999999


Q ss_pred             ccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHH
Q 023671          116 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  193 (279)
Q Consensus       116 tag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R  193 (279)
                      +|+.+...  .....+.+..|+.....+++.+.+..... +|++|.-. +...--...+......++...+|.+.....+
T Consensus        70 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~-iv~~SS~~-vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~  147 (313)
T 3ehe_A           70 IAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSR-IVFTSTST-VYGEAKVIPTPEDYPTHPISLYGASKLACEA  147 (313)
T ss_dssp             CCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEECCGG-GGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             CCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEeCchH-HhCcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            99864321  23345678889999999999998876544 44444211 0000000000000112233445555444455


Q ss_pred             HHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          194 ANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      +-..+++.+|++..-++ +.++|...
T Consensus       148 ~~~~~~~~~g~~~~ilRp~~v~G~~~  173 (313)
T 3ehe_A          148 LIESYCHTFDMQAWIYRFANVIGRRS  173 (313)
T ss_dssp             HHHHHHHHTTCEEEEEECSCEESTTC
T ss_pred             HHHHHHHhcCCCEEEEeeccccCcCC
Confidence            55666677777665555 45777643

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.52  E-value=4.9e-07  Score=87.18  Aligned_cols=127  Identities=18%  Similarity=0.201  Sum_probs=79.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc---------------CCCeEEEEeCCCCHH
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------------TGAVVRGFLGQPQLE  104 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~---------------~~~~v~~~~~~~d~~  104 (279)
                      ++|||+|||+ |.||..+|..|+..+...+|+++|+++.+.  ..+....               ....++.   ++++.
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAKI--AEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHHH--HHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHHH--HHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            3579999998 999999999998873223999999986211  1111100               0112443   34667


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEe-cCCCCchHHHHHHHHHH
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPIAAEVFKK  174 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~-TNPvd~~t~~~~~~~~~  174 (279)
                      +++++||+||++.+.|.+.+.++.+ -..++..+++.++.|.++.+ +.+|+.. |+|++..-.+ .+.+.+
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l-~~~l~~  151 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESI-GCILRE  151 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHH-HHHHHH
T ss_pred             HHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHH-HHHHHH
Confidence            8899999999999887654322222 12234456677777777764 5555442 7888765443 344443

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.49  E-value=8.3e-07  Score=80.82  Aligned_cols=175  Identities=14%  Similarity=0.011  Sum_probs=99.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccC---CCeEEEEeC-CC---CHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---GAVVRGFLG-QP---QLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~---~~~v~~~~~-~~---d~~eal~~A  110 (279)
                      +++||.|+||+|++|++++..|+..|+  +|+++|++..  .....++.....   ...+..+.+ -.   ++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            456999999999999999999999997  9999998652  111111111000   012332211 11   245678899


Q ss_pred             CEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecc
Q 023671          111 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  188 (279)
Q Consensus       111 DiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~  188 (279)
                      |+||++|+.....  ..+..+.+..|+.....+++.+.+..... +|++|... +....-...+.+..-..+...+|.+.
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~v~~SS~~-~~~~~~~~~~~E~~~~~~~~~Y~~sK  181 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS-FTYAASSS-TYGDHPGLPKVEDTIGKPLSPYAVTK  181 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEEEGG-GGTTCCCSSBCTTCCCCCCSHHHHHH
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEeccHH-hcCCCCCCCCCCCCCCCCCChhHHHH
Confidence            9999999864211  01234567789999999999998765443 44443211 00000000000000011233445554


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          189 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       189 lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      ....++-..+++..|++..-++ +.++|...
T Consensus       182 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~  212 (352)
T 1sb8_A          182 YVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  212 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence            4444555556666787776666 56888654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.49  E-value=8.4e-07  Score=84.90  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=73.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----------------CCCeEEEEeCCCCHHh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN  105 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~~~d~~e  105 (279)
                      |||+|||+ |.||..+|..|+..|+  +|+++|+++.+.  ..+....                ....++.   ++|+.+
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKI--EQLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHH--HHHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHH
Confidence            69999998 9999999999999998  999999986211  1111100                0123443   357778


Q ss_pred             hhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCch
Q 023671          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNST  164 (279)
Q Consensus       106 al~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~  164 (279)
                      ++++||+||++.+.|.+++.      ..+...++++++.|.++. ++.+|+.. |.|.+..
T Consensus        75 a~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~  129 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSY  129 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred             HHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcch
Confidence            89999999999987754432      233456677777777766 45555444 3455543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.49  E-value=4.7e-07  Score=82.90  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=75.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCch-----------hHHhhhhcccCCCeEEEEeC-CC---
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTP-----------GVTADISHMDTGAVVRGFLG-QP---  101 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~--~~~~~ev~L~D~~~~~-----------g~~~DL~~~~~~~~v~~~~~-~~---  101 (279)
                      .++++|.|+||+|++|++++..|+.  .|+  +|+++|++...           .....+.    ...+..+.+ -.   
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~   81 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLI----GFKGEVIAADINNPL   81 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGT----TCCSEEEECCTTCHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhcc----ccCceEEECCCCCHH
Confidence            4567999999999999999999999  787  99999985420           0111111    111222111 11   


Q ss_pred             CHHhh-hCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          102 QLENA-LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       102 d~~ea-l~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++.++ ..++|+||++||.......+..+.+..|+.....+++.+++.... +|.+.|
T Consensus        82 ~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS  138 (362)
T 3sxp_A           82 DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS  138 (362)
T ss_dssp             HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence            23344 689999999998654333445677889999999999999887654 444433

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.49  E-value=7.7e-07  Score=81.01  Aligned_cols=167  Identities=15%  Similarity=0.047  Sum_probs=96.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC---HHhhhC--CCCEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLVI  114 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~--~ADiVI  114 (279)
                      |||.|+||+|++|++++..|+.. ++  +|+++|++...+....+.+......+..+.+ -.|   +.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999998886 66  9999998641111111111111123333221 122   334566  899999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHh--CCC------ceEEEecCCC--C---------------chHHH
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC--CPN------ATVNLISNPV--N---------------STVPI  167 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~--~p~------a~viv~TNPv--d---------------~~t~~  167 (279)
                      ++||.....  .....+.+..|+.....+++.+.+.  ..+      +.||++|...  +               .++  
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~--  156 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT--  156 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC--
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCC--
Confidence            999865310  0123456788999999999998887  433      3555554210  0               010  


Q ss_pred             HHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          168 AAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       168 ~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                            .....++...+|.+.....++-..+++.+|++..-++ +.|+|...
T Consensus       157 ------E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~  202 (361)
T 1kew_A          157 ------ETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             ------TTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             ------CCCCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCC
Confidence                  0011233344555544444555556666777666666 55777653

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.49  E-value=1.4e-06  Score=78.64  Aligned_cols=113  Identities=13%  Similarity=0.099  Sum_probs=71.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch----hHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFL----GQPQLENALTGMDL  112 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~----g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADi  112 (279)
                      ++||.|+||+|++|++++..|+..|+  +|+.++++...    ....++..   ...+..+.    ...++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQE---LGDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGG---GSCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCC---CCcEEEEecCCCChHHHHHHHcCCCE
Confidence            46899999999999999999999998  88887765411    11112221   11222221    12345678899999


Q ss_pred             EEEccCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          113 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       113 VIitag~~~k~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ||++|+.......+ ..+.+..|+.....+++.+.+...-..||++|
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~S  130 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS  130 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEe
Confidence            99999754211111 12367889999999999988764223455554

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.48  E-value=3.1e-07  Score=81.92  Aligned_cols=162  Identities=17%  Similarity=0.087  Sum_probs=92.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +++||.|+||+|++|++++..|+..|+  +|+.+|++...  +....+.+......+..      ...++.++|+||++|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECC
Confidence            467999999999999999999999997  99999986521  11111111100111111      134466999999999


Q ss_pred             CCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC-----C-chHHHHHHHHHHhCCCCCCCeeeecch
Q 023671          118 GVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-----N-STVPIAAEVFKKAGTYDPKKLLGVTML  189 (279)
Q Consensus       118 g~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv-----d-~~t~~~~~~~~~~~~~~~~kViG~t~l  189 (279)
                      +.....  .....+.+. |+...+.+++.+.+.....+|.+.|.-+     + .++        ......+...+|.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~--------E~~~~~p~~~Y~~sK~  148 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTP--------EDSPLSPRSPYAASKV  148 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHHHHHHH
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCC--------CCCCCCCCChhHHHHH
Confidence            864310  111233455 9999999999999887554444433110     0 000        0011223344444444


Q ss_pred             hHHHHHHHHHHHcCC-CCCCCc-ceeecCCC
Q 023671          190 DVVRANTFVAEVLGL-DPRDVD-VPVVGGHA  218 (279)
Q Consensus       190 ds~R~~~~la~~l~v-~~~~V~-~~ViGehg  218 (279)
                      ...++-..+++..++ +..-++ +.++|...
T Consensus       149 ~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~  179 (321)
T 3vps_A          149 GLEMVAGAHQRASVAPEVGIVRFFNVYGPGE  179 (321)
T ss_dssp             HHHHHHHHHHHSSSSCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHcCCCceEEEEeccccCcCC
Confidence            444444455555565 444444 45777653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.47  E-value=1.5e-06  Score=82.92  Aligned_cols=122  Identities=19%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch------hHH-------hhhh-cccCCCeEEEEeCCCCH
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GVT-------ADIS-HMDTGAVVRGFLGQPQL  103 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~------g~~-------~DL~-~~~~~~~v~~~~~~~d~  103 (279)
                      +.+|.+|+|||. |+||..+|..|+..|+  +|+.+|+++.+      |..       .++. +.....+++.   ++|.
T Consensus        18 ~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~---tt~~   91 (444)
T 3vtf_A           18 GSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF---AESA   91 (444)
T ss_dssp             TCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---CSSH
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE---EcCH
Confidence            345669999998 9999999999999998  99999998621      110       1111 1111234554   4577


Q ss_pred             HhhhCCCCEEEEccCCCCCCCC-chhhHHHhhHHHHHHHHHHHHHhCCCceEEE-ecCCCCchHHHH
Q 023671          104 ENALTGMDLVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIA  168 (279)
Q Consensus       104 ~eal~~ADiVIitag~~~k~g~-~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv-~TNPvd~~t~~~  168 (279)
                      .+++++||++|++.++|.++.. ..+..+   ....+.+++.++..++..+|++ .|-|+...-.++
T Consensus        92 ~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~  155 (444)
T 3vtf_A           92 EEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLV  155 (444)
T ss_dssp             HHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHH
T ss_pred             HHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHH
Confidence            8899999999999999865532 222222   2445666777766555444443 477887655443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.47  E-value=1.8e-06  Score=83.25  Aligned_cols=129  Identities=15%  Similarity=0.100  Sum_probs=81.7

Q ss_pred             hhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCc--hhHHhhhhccc--C----------
Q 023671           26 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMD--T----------   90 (279)
Q Consensus        26 ~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~--~g~~~DL~~~~--~----------   90 (279)
                      +-..+++..+.   ++|||+|||+ |.+|..+|..|+.. |+. +|+++|+++.  ++.+..+....  .          
T Consensus         6 ~~~~~~~~~~~---~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l   80 (478)
T 3g79_A            6 SKLEKLLKERG---PIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEEL   80 (478)
T ss_dssp             CHHHHHHHHHC---SCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHH
T ss_pred             hHHHHHHhhcC---CCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHH
Confidence            33444444432   4579999998 99999999999999 764 8999999873  23444444311  0          


Q ss_pred             ------CCeEEEEeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCC
Q 023671           91 ------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVN  162 (279)
Q Consensus        91 ------~~~v~~~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd  162 (279)
                            ...+..   ++| .+++++||+||++.+.|.+...++    ..++..++..++.|.++. |+.+|+.- |-|.+
T Consensus        81 ~~~~~~~g~l~~---ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pg  152 (478)
T 3g79_A           81 IGKVVKAGKFEC---TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPG  152 (478)
T ss_dssp             HHHHHHTTCEEE---ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTT
T ss_pred             HHhhcccCCeEE---eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChH
Confidence                  123443   346 588999999999998876543210    123445566667777665 45554443 55665


Q ss_pred             chHHH
Q 023671          163 STVPI  167 (279)
Q Consensus       163 ~~t~~  167 (279)
                      ..-.+
T Consensus       153 tt~~v  157 (478)
T 3g79_A          153 TTEGM  157 (478)
T ss_dssp             TTTTH
T ss_pred             HHHHH
Confidence            54443

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.47  E-value=1.3e-06  Score=79.79  Aligned_cols=111  Identities=10%  Similarity=0.087  Sum_probs=72.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC-----CCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-----GMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~-----~ADiVI  114 (279)
                      .|+|.|+||+|++|++++..|+..| .  +|+++|++........+........+.   ....+.++++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceEeeecC---cHHHHHHHHhhcccCCCCEEE
Confidence            4689999999999999999999988 6  899999865221111121111001111   1122344555     599999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++|+.......+..+.+..|+.....+++.+.+... . +|++|
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r-~V~~S  162 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-P-FLYAS  162 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-C-EEEEE
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-e-EEEEc
Confidence            999865433334566788899999999999998765 4 44443

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.47  E-value=6.5e-07  Score=84.37  Aligned_cols=112  Identities=18%  Similarity=0.273  Sum_probs=72.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc--------------CCCeEEEEeCCCCHHhhh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~--------------~~~~v~~~~~~~d~~eal  107 (279)
                      |||+|||+ |.||..++..|+. |+  +|+++|+++.+  ...+....              ....+..   ++++.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHH--HHHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            58999999 9999999999988 76  99999997621  11111110              0112333   34666789


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE-ecCCCCchHHH
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPI  167 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv-~TNPvd~~t~~  167 (279)
                      ++||+||++...+.+.+..+.|     ...++++++.+.+..|+.+|+. .|||++....+
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l  127 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEM  127 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH
Confidence            9999999998766322222223     1234455555555457777766 79999886544

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.46  E-value=1e-06  Score=83.66  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc--C--------------CCeEEEEeCCCCHHh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------GAVVRGFLGQPQLEN  105 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~--~--------------~~~v~~~~~~~d~~e  105 (279)
                      |||+|||+ |.||..++..|+..|+  +|+++|+++.+.  ..+....  .              ..++..   ++++.+
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~~--~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKI--DLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            58999998 9999999999999998  999999976211  1111100  0              112443   346777


Q ss_pred             hhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CC---CceEEEe-cCCCCchHHHHHHHHHH
Q 023671          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CP---NATVNLI-SNPVNSTVPIAAEVFKK  174 (279)
Q Consensus       106 al~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p---~a~viv~-TNPvd~~t~~~~~~~~~  174 (279)
                      ++++||+||++.+.|..... ..     +...+++.++.|.+. .|   +.+|+.. |+|.+.....+.+.+.+
T Consensus        73 ~~~~aDvviiaVptp~~~~~-~~-----dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNG-DL-----DLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTS-SB-----CCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             HhccCCEEEEEcCCCcccCC-Cc-----chHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            89999999999977654321 11     223344555555554 34   5666554 78887633333344443

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.45  E-value=8.4e-07  Score=85.09  Aligned_cols=101  Identities=15%  Similarity=0.203  Sum_probs=69.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-----h-hhhcccC---------CCeEEEEeCCCCHH
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----A-DISHMDT---------GAVVRGFLGQPQLE  104 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~-----~-DL~~~~~---------~~~v~~~~~~~d~~  104 (279)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++.++..     + .+.....         ..++..   ++|+ 
T Consensus        53 ~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~dl-  125 (460)
T 3k6j_A           53 DVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSDF-  125 (460)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESCG-
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCCH-
Confidence            3569999999 9999999999999998  99999998632110     0 1111100         123443   3466 


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCc
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNS  163 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~  163 (279)
                      +++++||+||.+..              ++..+.+++..++.+.++ ++++  +||.+.+
T Consensus       126 ~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSsl  169 (460)
T 3k6j_A          126 HKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTSSL  169 (460)
T ss_dssp             GGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             HHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCCh
Confidence            58999999999862              345677888888998874 5654  4665543

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.45  E-value=8.5e-07  Score=85.81  Aligned_cols=102  Identities=19%  Similarity=0.138  Sum_probs=70.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +|||.|+||+|++|++++..|+..|+  +|+.++++....  ...|+.              +...+++.++|+||++|+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~v~~d~~--------------~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGKRFWDPL--------------NPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTCEECCTT--------------SCCTTTTTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccceeeccc--------------chhHHhcCCCCEEEECCC
Confidence            78999999999999999999999998  999999876221  111111              112467899999999998


Q ss_pred             CCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .....   .....+++..|+.....+++.+.+...-..+|++|
T Consensus       211 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          211 EPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             C-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            64221   12345567889999999999855444323444443

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.45  E-value=2.6e-06  Score=76.92  Aligned_cols=117  Identities=13%  Similarity=0.051  Sum_probs=74.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccC-CCeEEEEe----CCCCHHhhhCCCCEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFL----GQPQLENALTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~-~~~v~~~~----~~~d~~eal~~ADiV  113 (279)
                      ++++|.|+||+|++|++++..|+..|+  +|+.++++.. .....++..... ...++.+.    ...++.++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            456999999999999999999999998  8988877652 111111111100 01222221    123456788999999


Q ss_pred             EEccCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          114 IIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       114 Iitag~~~k~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |++|+.......+ ..+.+..|+.....+++.+.+...-..||++|
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S  127 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS  127 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence            9999754211122 23467889999999999998876223455554

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.45  E-value=1.3e-06  Score=73.73  Aligned_cols=100  Identities=12%  Similarity=0.112  Sum_probs=68.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC---CCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~---~~d~~eal~~ADiVIitag  118 (279)
                      |||.|+||+|++|++++..|+.+|+  +|+++++++...  .++.  .   .+..+..   ..+. +++.++|+||+++|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~--~---~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   70 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKI--TQTH--K---DINILQKDIFDLTL-SDLSDQNVVVDAYG   70 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHH--HHHC--S---SSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhh--hhcc--C---CCeEEeccccChhh-hhhcCCCEEEECCc
Confidence            6899999999999999999999997  999999976221  1111  1   1111111   1122 67899999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .+...       ...|+...+.+++.+++... ..++++|.
T Consensus        71 ~~~~~-------~~~~~~~~~~l~~a~~~~~~-~~~v~~SS  103 (221)
T 3ew7_A           71 ISPDE-------AEKHVTSLDHLISVLNGTVS-PRLLVVGG  103 (221)
T ss_dssp             SSTTT-------TTSHHHHHHHHHHHHCSCCS-SEEEEECC
T ss_pred             CCccc-------cchHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence            75321       24588889999999987643 34454443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.44  E-value=1.3e-06  Score=81.05  Aligned_cols=101  Identities=14%  Similarity=0.203  Sum_probs=71.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhc--c--------cCCCeEEEEeCCCCHHhhhC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--M--------DTGAVVRGFLGQPQLENALT  108 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~--~--------~~~~~v~~~~~~~d~~eal~  108 (279)
                      .++|||+|||+ |.+|..++..|+..|+  +|.++|+++...  ..+..  .        .....+..   ++|+.++++
T Consensus        27 ~~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~--~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~   98 (356)
T 3k96_A           27 PFKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHV--DEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLE   98 (356)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHH--HHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHT
T ss_pred             ccCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHh
Confidence            34579999999 9999999999999997  999999975211  11111  0        01123443   347778999


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~  163 (279)
                      +||+||++..                ...++++++.+..+. |+.+++.++|.++.
T Consensus        99 ~aDvVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~  138 (356)
T 3k96_A           99 GVTDILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAK  138 (356)
T ss_dssp             TCCEEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBT
T ss_pred             cCCEEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCc
Confidence            9999999862                124677778888776 57788888886654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.44  E-value=1.5e-06  Score=78.21  Aligned_cols=116  Identities=16%  Similarity=-0.014  Sum_probs=73.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC---HHhhhCC--CCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG--MDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~~--ADiVI  114 (279)
                      .+||.|+||+|++|++++..|+..|+  +|+++|++........+........+..+.+ -.|   +.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999997  9999998762211111221111122333211 112   3345554  59999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++||.....  ..+....+..|+.....+++.+.+......+|++|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999865211  12345567789999999999988765434455443

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.44  E-value=3.9e-07  Score=81.93  Aligned_cols=167  Identities=16%  Similarity=0.105  Sum_probs=93.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCC---CHHhhhC--CCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALT--GMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~---d~~eal~--~ADiVI  114 (279)
                      ||||.|+||+|++|++++..|+..|+  +|+++|++..... ..+..     .+..+. .-.   ++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            46999999999999999999999997  9999997652111 11111     112111 111   2345566  899999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHH
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV  192 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~  192 (279)
                      ++|+.....  ..+..+.+..|+.....+++.+.+.... .+|++|... +...--...+.......+...+|.+.....
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~-~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e  150 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAA-TYGEVDVDLITEETMTNPTNTYGETKLAIE  150 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGG-GGCSCSSSSBCTTSCCCCSSHHHHHHHHHH
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCce-eeCCCCCCCCCcCCCCCCCChHHHHHHHHH
Confidence            999864211  0123456778999999999998876544 344444311 100000000000001122334444444444


Q ss_pred             HHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          193 RANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       193 R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                      ++-..+++..|++..-++ +.|+|.+
T Consensus       151 ~~~~~~~~~~~~~~~ilrp~~v~G~~  176 (330)
T 2c20_A          151 KMLHWYSQASNLRYKIFRYFNVAGAT  176 (330)
T ss_dssp             HHHHHHHHTSSCEEEEEECSEEECCC
T ss_pred             HHHHHHHHHhCCcEEEEecCcccCCC
Confidence            444455555566655555 4577764

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.44  E-value=1.9e-06  Score=76.56  Aligned_cols=109  Identities=10%  Similarity=0.098  Sum_probs=72.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC-----CCEEEEc
Q 023671           43 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG-----MDLVIIP  116 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~-----ADiVIit  116 (279)
                      ||.|+||+|++|++++..|+..| .  +|+++++........++........+.   ....+.+++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58899999999999999999988 6  899999865221111222111111111   11224455664     9999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |+.......+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865433334566788899999999999998766  444443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.43  E-value=1.6e-06  Score=83.20  Aligned_cols=103  Identities=15%  Similarity=0.180  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch-hHH--h----h------hhcccC-CCeEEEEeCCCCH
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-GVT--A----D------ISHMDT-GAVVRGFLGQPQL  103 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~-g~~--~----D------L~~~~~-~~~v~~~~~~~d~  103 (279)
                      +.+||+|||+ |.+|..+|..|+..|+  +|+++|+++  +. +..  .    .      +..... ....+.   ++++
T Consensus        36 ~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~~  109 (463)
T 1zcj_A           36 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST  109 (463)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESCG
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCCH
Confidence            3569999999 9999999999999998  999999986  11 110  0    0      000000 111232   2465


Q ss_pred             HhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchH
Q 023671          104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTV  165 (279)
Q Consensus       104 ~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t  165 (279)
                       +++++||+||++..              ++..+.+++.+.+.+.++ ++++  +||.+.+-.
T Consensus       110 -~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~~  155 (463)
T 1zcj_A          110 -KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNV  155 (463)
T ss_dssp             -GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCH
T ss_pred             -HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcCH
Confidence             67999999999973              245667778888888774 5554  357776544

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.43  E-value=7.3e-07  Score=80.48  Aligned_cols=113  Identities=20%  Similarity=0.140  Sum_probs=75.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEeC-CC---CHHhhhCC--CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QP---QLENALTG--MD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-~~---d~~eal~~--AD  111 (279)
                      ||||.|+||+|++|++++..|+..|+  +|+++|++.   ......++...   .++..+.+ -.   ++.+++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccC---CceEEEEcCCCCHHHHHHHHhccCCC
Confidence            46899999999999999999999997  999999753   11112223221   11222211 11   24456677  99


Q ss_pred             EEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       112 iVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +||++|+.....  ..+..+.+..|+.....+++.+.+....+.+|++|
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            999999864210  01234567889999999999999887654555554

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.43  E-value=1.3e-06  Score=80.82  Aligned_cols=169  Identities=15%  Similarity=0.066  Sum_probs=97.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CC---CCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQ---PQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~---~d~~eal~~ADiVIi  115 (279)
                      ++|||.|+||+|++|++++..|+..|+  +|+++|++......  +..    ..+..+. .-   .++.++++++|+||+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~v~~~~~Dl~d~~~~~~~~~~~d~Vih   99 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT--EDM----FCDEFHLVDLRVMENCLKVTEGVDHVFN   99 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC--GGG----TCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh--hcc----CCceEEECCCCCHHHHHHHhCCCCEEEE
Confidence            467999999999999999999999997  99999987521110  111    1111111 11   134567889999999


Q ss_pred             ccCCCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHH-----HHHHHhC--CCCCCCeee
Q 023671          116 PAGVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA-----EVFKKAG--TYDPKKLLG  185 (279)
Q Consensus       116 tag~~~k~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~-----~~~~~~~--~~~~~kViG  185 (279)
                      +|+.....   .....+.+..|+.....+++.+.+.....+|.+.| .. +...--.     ..+....  ..++...+|
T Consensus       100 ~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS-~~-v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~  177 (379)
T 2c5a_A          100 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS-AC-IYPEFKQLETTNVSLKESDAWPAEPQDAFG  177 (379)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE-GG-GSCGGGSSSSSSCEECGGGGSSBCCSSHHH
T ss_pred             CceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee-hh-eeCCCCCCCccCCCcCcccCCCCCCCChhH
Confidence            99865321   22345677889999999999998765444444433 11 1000000     0000000  112233444


Q ss_pred             ecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          186 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       186 ~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .+.....++-..+++..|++..-++ +.++|...
T Consensus       178 ~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~  211 (379)
T 2c5a_A          178 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFG  211 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCC
Confidence            4444344444445566676665565 56777653

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.41  E-value=6e-07  Score=82.29  Aligned_cols=112  Identities=16%  Similarity=0.139  Sum_probs=74.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-C----CCHHhhhCCCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q----PQLENALTGMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~----~d~~eal~~ADi  112 (279)
                      .++|||.|+||+|++|++++..|+.. ++  +|+.+|++....  .++..   ...++.+.+ -    ..+.++++++|+
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~~~~Dl~~d~~~~~~~~~~~d~   94 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVK---HERMHFFEGDITINKEWVEYHVKKCDV   94 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGG---STTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhcc---CCCeEEEeCccCCCHHHHHHHhccCCE
Confidence            34679999999999999999999887 77  999999875211  11111   122332211 1    124456789999


Q ss_pred             EEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          113 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       113 VIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ||++|+......  .+..+.+..|+.....+++.+.+.+  ..+|++|.
T Consensus        95 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           95 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            999998653211  1234567788888899999999887  34555543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.40  E-value=9.4e-07  Score=80.52  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=73.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhhCC--CCE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALTG--MDL  112 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~~--ADi  112 (279)
                      .|+|.|+||+|++|++++..|+..|+  +|+++|++..  ......+..   ...+..+.+ -.|   +.+++++  .|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCE
Confidence            46999999999999999999999997  9999998752  111111111   112222111 112   3345555  899


Q ss_pred             EEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          113 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       113 VIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ||++|+.+...  .....+.+..|+.....+++.+.+......+|++|.
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            99999864211  112345677899999999999988753345555543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.40  E-value=7e-07  Score=75.98  Aligned_cols=101  Identities=19%  Similarity=0.207  Sum_probs=69.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-----CCCHHhhhCCCCEEEEc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-----QPQLENALTGMDLVIIP  116 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-----~~d~~eal~~ADiVIit  116 (279)
                      |||.|+||+|++|+.++..|+..|+  +|++++++.....  ++      ..+..+.+     ..++.++++++|+||++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVP--QY------NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSC--CC------TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchh--hc------CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            5899999999999999999999997  9999998752110  01      11222111     11345678999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +|....      +.+..|+.....+++.+++.... .+|++|.
T Consensus        71 ag~~~~------~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGK------SLLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTS------SCCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCC------CcEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            987642      24456777788888888876544 4444443

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.38  E-value=1.7e-06  Score=79.86  Aligned_cols=171  Identities=14%  Similarity=0.015  Sum_probs=98.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CC---CHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~---d~~eal~~ADiVI  114 (279)
                      ++|||.|+||+|++|++++..|+..| .  +|+++|++..... ..+..   ...+..+.+ -.   ++.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            45799999999999999999999988 7  9999998652110 11110   122333221 11   2445678999999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHH--HhC---CC-CCCCeee
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFK--KAG---TY-DPKKLLG  185 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~--~~~---~~-~~~kViG  185 (279)
                      ++|+.....  ..+..+.+..|+.....+++.+.+. .... +|++|... +...--...+.  ...   .. ++...+|
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~-~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~  182 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKK-VVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPYS  182 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCE-EEEEEEC---------------CCCCCCCSSCCCSHHH
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCe-EEEeCCHH-HcCCCCCCCcCcccccccccccCCCCchH
Confidence            999864211  0123456788999999999999876 4333 44444321 11000000000  000   11 2334455


Q ss_pred             ecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          186 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       186 ~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .+.....++-..+++..|++..-++ +.++|...
T Consensus       183 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          183 MSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            5544455555556666687776666 56888754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.38  E-value=7.9e-07  Score=80.10  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhh-------hhcccC--------------CCeEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD-------ISHMDT--------------GAVVRG   96 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~D-------L~~~~~--------------~~~v~~   96 (279)
                      +++||+|||+ |.+|..+|..|+..|+  +|+++|+++.  ......       +.....              ...++.
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            3568999999 9999999999999998  9999999861  110000       000000              012443


Q ss_pred             EeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCc
Q 023671           97 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNS  163 (279)
Q Consensus        97 ~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~  163 (279)
                         ++|+.+++++||+||++..              .+..+.+++.+.+.+..+ ++++  +||...+
T Consensus        91 ---~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i  139 (302)
T 1f0y_A           91 ---STDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSSL  139 (302)
T ss_dssp             ---ESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred             ---ecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCCC
Confidence               3467678999999999862              123455677777877764 5654  4555443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.37  E-value=3.2e-06  Score=80.49  Aligned_cols=115  Identities=21%  Similarity=0.234  Sum_probs=71.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc--------------CCCeEEEEeCCCCHH
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TGAVVRGFLGQPQLE  104 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~--------------~~~~v~~~~~~~d~~  104 (279)
                      .++|||+|||+ |.||..+|..|++ |+  +|+++|+++.+-  ..+....              ....++.   ++|+.
T Consensus        34 ~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v--~~l~~g~~~i~e~~l~~ll~~~~~~l~~---ttd~~  104 (432)
T 3pid_A           34 SEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKV--DMLNQKISPIVDKEIQEYLAEKPLNFRA---TTDKH  104 (432)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHH--HHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHH
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHh--hHHhccCCccccccHHHHHhhccCCeEE---EcCHH
Confidence            35679999998 9999999998887 87  999999986211  1111100              0123443   35778


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe-cCCCCchHHH
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPI  167 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~-TNPvd~~t~~  167 (279)
                      +++++||+||++...+..+.....     +...+++.++.|.+..|+.+|+.- |.|++..-.+
T Consensus       105 ea~~~aDvViiaVPt~~~~~~~~~-----Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l  163 (432)
T 3pid_A          105 DAYRNADYVIIATPTDYDPKTNYF-----NTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDI  163 (432)
T ss_dssp             HHHTTCSEEEECCCCEEETTTTEE-----ECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHH
T ss_pred             HHHhCCCEEEEeCCCccccccccc-----cHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHH
Confidence            899999999999755432211111     223344455555554577766554 5677654433

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.37  E-value=1.5e-06  Score=73.68  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=69.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC---CCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~---~~d~~eal~~ADiVIitag  118 (279)
                      |||.|+||+|++|+.++..|+..|+  +|+++++++...  .++...    .++.+.+   ..+. +++.++|+||+++|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~~~----~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQKA--ADRLGA----TVATLVKEPLVLTE-ADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHTCT----TSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEeccccc--ccccCC----CceEEecccccccH-hhcccCCEEEECCc
Confidence            5899999999999999999999997  999999875211  112111    1121111   1122 67899999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....+.     ....|+...+.+++.+++..  ..++++|
T Consensus        72 ~~~~~~-----~~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           72 VPWGSG-----RGYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CCTTSS-----CTHHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             cCCCcc-----hhhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            752222     13568889999999988766  4555554

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.36  E-value=3e-06  Score=75.39  Aligned_cols=99  Identities=18%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||.|+||+||||++++..|..+|+  +|+.+.+++..+            .+..  ...+ .+++.++|.||++|+.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~------------~~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPG------------RITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTT------------EEEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcC------------eeec--chhh-HhhccCCCEEEEeccCcc
Confidence            7999999999999999999999998  999998754211            1110  0012 356899999999987432


Q ss_pred             CC-----C-CchhhHHHhhHHHHHHHHHHHHHhCCC-ceEEEe
Q 023671          122 KP-----G-MTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLI  157 (279)
Q Consensus       122 k~-----g-~~r~d~~~~N~~i~~~i~~~I~~~~p~-a~viv~  157 (279)
                      ..     . ....++...|+...+.+++.+++.... .+++..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~  106 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV  106 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            11     1 113456677899999999988876533 334433

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.35  E-value=1e-06  Score=78.92  Aligned_cols=167  Identities=13%  Similarity=0.084  Sum_probs=94.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CC---CHHhhhCC--CCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTG--MDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~---d~~eal~~--ADi  112 (279)
                      .++++|.|+||+|++|++++..|+..|+  +|+++|++... ..  +       .+..+.. -.   ++.+++++  .|+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~--l-------~~~~~~~Dl~d~~~~~~~~~~~~~d~   77 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-KL--P-------NVEMISLDIMDSQRVKKVISDIKPDY   77 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-CC--T-------TEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-cc--c-------eeeEEECCCCCHHHHHHHHHhcCCCE
Confidence            4567999999999999999999999997  99999987532 10  1       1222111 11   23445655  899


Q ss_pred             EEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHH--HHHHHHHhCCCCCCCeeeecc
Q 023671          113 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI--AAEVFKKAGTYDPKKLLGVTM  188 (279)
Q Consensus       113 VIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~--~~~~~~~~~~~~~~kViG~t~  188 (279)
                      ||++|+.....  ..+..+.+..|+.....+++.+.+......+|++|... +....  -...+......++...+|.+.
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~-v~g~~~~~~~~~~E~~~~~~~~~Y~~sK  156 (321)
T 2pk3_A           78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE-EYGMILPEESPVSEENQLRPMSPYGVSK  156 (321)
T ss_dssp             EEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGG-GTBSCCGGGCSBCTTSCCBCCSHHHHHH
T ss_pred             EEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHH-hcCCCCCCCCCCCCCCCCCCCCccHHHH
Confidence            99999864311  12345677889999999999997664334555554221 00000  000000000122333444444


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          189 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       189 lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      ....++-..+++..|++..-++ +.++|...
T Consensus       157 ~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~  187 (321)
T 2pk3_A          157 ASVGMLARQYVKAYGMDIIHTRTFNHIGPGQ  187 (321)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeCcccCcCC
Confidence            4344444455555666655555 45777654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.34  E-value=4.9e-06  Score=75.39  Aligned_cols=113  Identities=14%  Similarity=0.054  Sum_probs=73.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      +++||.|+||+|++|++++..|+..|+  +|+++|++.... ...+.+......+..+... -...++.++|+||++|+.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D-~~~~~~~~~d~vih~A~~  101 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGR-KRNVEHWIGHENFELINHD-VVEPLYIEVDQIYHLASP  101 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGTGGGTTCTTEEEEECC-TTSCCCCCCSEEEECCSC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccc-hhhhhhhccCCceEEEeCc-cCChhhcCCCEEEECccc
Confidence            356999999999999999999999987  999999864110 0111111111234433221 112457899999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus       102 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A          102 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            4311  123345678899999999999988764  444444

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.33  E-value=1.9e-06  Score=71.75  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=69.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-C---CCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~---~d~~eal~~ADiVIita  117 (279)
                      |||.|+||+|++|++++..|+..|+  +|+++++++...  .++.    ...+..+.. .   +++.++++++|+||+++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~--~~~~----~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL--PSEG----PRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS--CSSS----CCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhc--cccc----CCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999999997  999999875211  0110    112222111 1   23456789999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |......     ....|+.....+++.+.+.... .++++|
T Consensus        76 ~~~~~~~-----~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDLS-----PTTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCCS-----CCCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCCC-----ccchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            8653211     1236788888899988887644 344444

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.32  E-value=1.7e-06  Score=87.50  Aligned_cols=101  Identities=22%  Similarity=0.321  Sum_probs=69.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHH--hhh----hccc---------CCCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVT--ADI----SHMD---------TGAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~-~g~~--~DL----~~~~---------~~~~v~~~~~~~d  102 (279)
                      ++||+|||+ |.+|+.+|..++..|+  +|+++|+++  + .+..  .+.    ....         ...+++.   ++|
T Consensus       312 ~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~d  385 (725)
T 2wtb_A          312 IKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---SLD  385 (725)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---ESS
T ss_pred             CcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---eCC
Confidence            568999999 9999999999999998  999999986  1 1110  000    0000         1123443   246


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      + +++++||+||++..              ++..+.+++...+.++++...++ +||...+
T Consensus       386 ~-~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il-asntStl  430 (725)
T 2wtb_A          386 Y-ESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL-ASNTSTI  430 (725)
T ss_dssp             S-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE-EECCSSS
T ss_pred             H-HHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE-EeCCCCC
Confidence            5 68999999999862              34566778888888887543332 6777664

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.32  E-value=2.5e-06  Score=77.15  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=73.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC---HHhhhC--CCC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMD  111 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~--~AD  111 (279)
                      ..+.|+|.|+||+|++|++++..|+..|+  +|+++|++.....  ++...  ...+..+.+ -.|   +.++++  ++|
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~--l~~v~~~~~Dl~d~~~~~~~~~~~~~D   90 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPP--VAGLSVIEGSVTDAGLLERAFDSFKPT   90 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCS--CTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhc--cCCceEEEeeCCCHHHHHHHHhhcCCC
Confidence            34457999999999999999999999887  9999998652111  00010  012222211 122   345667  999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +||++||..........+ +..|+.....+++.+.+.... .+|++|
T Consensus        91 ~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  135 (330)
T 2pzm_A           91 HVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ  135 (330)
T ss_dssp             EEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             EEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            999999865322122233 678999999999999876544 444443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.31  E-value=2.3e-06  Score=72.82  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             EEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEEEEcc
Q 023671           43 KVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA  117 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiVIita  117 (279)
                      +|.|+||+|++|+.++..|+ ..|+  +|+++++++.. ...++...  ...+..+..    ..++.++++++|+||+++
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~a   81 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVVFVGA   81 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence            49999999999999999999 7898  99999986420 22222111  122222211    123456789999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |..             |+. .+.+++.+++.....+|.+.|
T Consensus        82 g~~-------------n~~-~~~~~~~~~~~~~~~iv~iSs  108 (221)
T 3r6d_A           82 MES-------------GSD-MASIVKALSRXNIRRVIGVSM  108 (221)
T ss_dssp             CCC-------------HHH-HHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCC-------------Chh-HHHHHHHHHhcCCCeEEEEee
Confidence            743             444 788888888765444443333

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.31  E-value=2.2e-06  Score=75.74  Aligned_cols=158  Identities=14%  Similarity=0.104  Sum_probs=89.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC--CCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~--ADiVIit  116 (279)
                      .++|||.|+||+|++|++++..|+..|.........   ......|+.+.            .++.+++++  +|+||++
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~---~~~~~~D~~d~------------~~~~~~~~~~~~d~Vih~   68 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVF---VSSKDADLTDT------------AQTRALFEKVQPTHVIHL   68 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEE---CCTTTCCTTSH------------HHHHHHHHHSCCSEEEEC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCcccccccc---cCceecccCCH------------HHHHHHHhhcCCCEEEEC
Confidence            467899999999999999999999888510000000   00111222221            124456665  9999999


Q ss_pred             cCCCCC---CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC---------CCCchHHHHHHHHHHhCCCCCCC-e
Q 023671          117 AGVPRK---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN---------PVNSTVPIAAEVFKKAGTYDPKK-L  183 (279)
Q Consensus       117 ag~~~k---~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN---------Pvd~~t~~~~~~~~~~~~~~~~k-V  183 (279)
                      |+....   ......+.+..|+.....+++.+.+.....+|.+.|-         |.+--.       .......+.. .
T Consensus        69 A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-------~~~~~~~p~~~~  141 (319)
T 4b8w_A           69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETM-------IHNGPPHNSNFG  141 (319)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGG-------GGBSCCCSSSHH
T ss_pred             ceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccc-------cccCCCCCCcch
Confidence            986421   1123456788999999999999988765544433332         111100       0000011111 2


Q ss_pred             eeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          184 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       184 iG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      +|.+.+...++-..+++..+++..-++ +.++|...
T Consensus       142 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence            444444444454555566677665565 56888654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.31  E-value=1.6e-06  Score=78.58  Aligned_cols=118  Identities=20%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhh-hhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~D-L~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+||+|||+ |.+|+.+|..|+ .|+  +|+++|+++ ....+.+ +.+.. ...++.   ++++. ++++||+||.+..
T Consensus        12 ~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~---~~~~~-~~~~aDlVieavp   82 (293)
T 1zej_A           12 HMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEF---TTTLE-KVKDCDIVMEAVF   82 (293)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEE---ESSCT-TGGGCSEEEECCC
T ss_pred             CCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEE---eCCHH-HHcCCCEEEEcCc
Confidence            469999999 999999999999 998  999999986 1111111 21111 123443   23554 4899999999862


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecch
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  189 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~l  189 (279)
                                    ++..+.+.+...+... |++++  +||.+.+-...    +...... +.+++|+-.+
T Consensus        83 --------------e~~~vk~~l~~~l~~~-~~~Il--asntSti~~~~----~a~~~~~-~~r~~G~Hf~  131 (293)
T 1zej_A           83 --------------EDLNTKVEVLREVERL-TNAPL--CSNTSVISVDD----IAERLDS-PSRFLGVHWM  131 (293)
T ss_dssp             --------------SCHHHHHHHHHHHHTT-CCSCE--EECCSSSCHHH----HHTTSSC-GGGEEEEEEC
T ss_pred             --------------CCHHHHHHHHHHHhcC-CCCEE--EEECCCcCHHH----HHHHhhc-ccceEeEEec
Confidence                          2455666676778887 88876  35554432211    1222222 3567777443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.30  E-value=1.4e-06  Score=81.95  Aligned_cols=130  Identities=18%  Similarity=0.303  Sum_probs=66.0

Q ss_pred             hhHhhHHHHHHhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCC------CcEEEEEeCCC-
Q 023671            5 SEANQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL------VSVLHLYDVVN-   77 (279)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~------~~ev~L~D~~~-   77 (279)
                      |.+++|+.+.+.|+-++.-+.+    ..+.+.--.++.||+|||| |.-|+++|..|...+.      ..+|.|+.+++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e   76 (391)
T 4fgw_A            2 SAAADRLNLTSGHLNAGRKRSS----SSVSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEE   76 (391)
T ss_dssp             -----------------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCB
T ss_pred             cchhhHHHHHhhhhcccccccc----ccccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchH
Confidence            5678899999999988766543    2222222356779999999 9999999999987642      13688988765 


Q ss_pred             c--hhHHhhhh--ccc--------CCCeEEEEeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHH
Q 023671           78 T--PGVTADIS--HMD--------TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI  145 (279)
Q Consensus        78 ~--~g~~~DL~--~~~--------~~~~v~~~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I  145 (279)
                      .  +..+..+.  |.+        ...+++.   ++|+.+++++||+||++..                ...++++++++
T Consensus        77 ~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~---t~dl~~al~~ad~ii~avP----------------s~~~r~~l~~l  137 (391)
T 4fgw_A           77 INGEKLTEIINTRHQNVKYLPGITLPDNLVA---NPDLIDSVKDVDIIVFNIP----------------HQFLPRICSQL  137 (391)
T ss_dssp             SSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE---ESCHHHHHTTCSEEEECSC----------------GGGHHHHHHHH
T ss_pred             hhhHHHHHHHHhcCcCcccCCCCcCCCCcEE---eCCHHHHHhcCCEEEEECC----------------hhhhHHHHHHh
Confidence            1  11222222  221        1234554   4589999999999999752                13366777777


Q ss_pred             HHhC-CCceEEEec
Q 023671          146 AKCC-PNATVNLIS  158 (279)
Q Consensus       146 ~~~~-p~a~viv~T  158 (279)
                      +.+- ++..++.++
T Consensus       138 ~~~~~~~~~iv~~~  151 (391)
T 4fgw_A          138 KGHVDSHVRAISCL  151 (391)
T ss_dssp             TTTSCTTCEEEECC
T ss_pred             ccccCCCceeEEec
Confidence            7665 455566554

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.29  E-value=2.1e-06  Score=73.80  Aligned_cols=113  Identities=19%  Similarity=0.132  Sum_probs=73.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~  119 (279)
                      .++|.|+||+|++|++++..|+..|...+|+++|+++...........   ..+.. .....++.++++++|+||++||.
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~---~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV---NQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC---EEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCc---eEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            458999999999999999999998876689999987621100000000   00110 11122455678899999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ... .....+.+..|+.....+++.+.+.... .|+++|
T Consensus        95 ~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~S  131 (242)
T 2bka_A           95 TRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLS  131 (242)
T ss_dssp             CHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEc
Confidence            421 1123456677888888999988876544 445444

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.29  E-value=4.1e-07  Score=83.61  Aligned_cols=93  Identities=19%  Similarity=0.232  Sum_probs=68.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||.|+||+|++|++++..|+..|.. +|+.+|++         .+            ..++.++++++|+||++|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------~d------------~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------TK------------EEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------CC------------HHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------CC------------HHHHHHHhccCCEEEECCcCCC
Confidence            68999999999999999999888752 78888773         00            1234567789999999998654


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..  ...+.+..|+...+.+++.+++......++.+|
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            22  233455678888999999998876554455544

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.28  E-value=1.6e-06  Score=77.54  Aligned_cols=99  Identities=13%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag  118 (279)
                      +|||.|+||+|++|++++..|+..|+  +|++++.+..    .|+.+.            .++.++++  ++|+||++|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d~------------~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDS------------RAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCH------------HHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccCH------------HHHHHHHHhcCCCEEEEcCe
Confidence            46999999999999999999999887  8888876421    233221            12455677  8999999998


Q ss_pred             CCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .....   ..+..+.+..|+...+.+++.+.+.... .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  106 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLG  106 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEc
Confidence            65311   1123456778999999999999886543 445444

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.27  E-value=4.7e-06  Score=75.37  Aligned_cols=112  Identities=17%  Similarity=0.069  Sum_probs=71.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC---HHhhhCC--CCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG--MDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~~--ADi  112 (279)
                      .++|||.|+||+|++|++++..|+..|.  +|+++|++.... ...+...   ..+..+.+ -+|   +.+++++  +|+
T Consensus        19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~   92 (333)
T 2q1w_A           19 SHMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGR-REHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDA   92 (333)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccc-hhhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcE
Confidence            3457999999999999999999999987  999999865211 0111111   12322211 122   3455677  999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ||++||..........+ +..|+.....+++.+.+.... .||++|
T Consensus        93 vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  136 (333)
T 2q1w_A           93 VVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ  136 (333)
T ss_dssp             EEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             EEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            99999865332122223 778999999999999876543 444443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.27  E-value=2.5e-06  Score=82.29  Aligned_cols=101  Identities=21%  Similarity=0.312  Sum_probs=68.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhh----hhcc---cC---------CCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTAD----ISHM---DT---------GAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~D----L~~~---~~---------~~~v~~~~~~~d  102 (279)
                      .+||+|||+ |.+|..+|..|+..|+  +|+++|+++  +......    +...   ..         ..+++.   +++
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VTD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---ECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eCC
Confidence            459999999 9999999999999998  999999987  1111111    1111   00         013443   346


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCch
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  164 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~  164 (279)
                      + +++++||+||.+..              ++..+.+++..++.+.++ ++++  +||-+.+-
T Consensus        79 ~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti~  124 (483)
T 3mog_A           79 I-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSIS  124 (483)
T ss_dssp             G-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC
T ss_pred             H-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCCC
Confidence            5 57999999999862              245667788888888874 5544  46655543

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.26  E-value=1.2e-06  Score=76.85  Aligned_cols=105  Identities=19%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiVIit  116 (279)
                      ++||.|+||+|++|++++..|+..|+  +|+++|++.....    .     ..+..+..    ..++.++++++|+||++
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   70 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAA----E-----AHEEIVACDLADAQAVHDLVKDCDGIIHL   70 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCC----C-----TTEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCcccc----C-----CCccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence            35899999999999999999998886  9999998752110    0     01121110    11345678899999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |+...  .....+.+..|+.....+++.+.+.....+|.+.|
T Consensus        71 a~~~~--~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  110 (267)
T 3ay3_A           71 GGVSV--ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASS  110 (267)
T ss_dssp             CSCCS--CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CcCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            98652  22345667889999999999988765444444433

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.26  E-value=4.2e-06  Score=80.60  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----------------CCCeEEEEeCCCCHH
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLE  104 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~~~d~~  104 (279)
                      .|||+|||+ |.||..+|..|+..|+  +|+++|+++.+  +..+....                ...+++.   ++|+.
T Consensus         8 ~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~--v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~~   79 (478)
T 2y0c_A            8 SMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAK--IDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDIE   79 (478)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCHH
T ss_pred             CceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCHH
Confidence            579999998 9999999999999998  99999998621  11111110                0113443   35777


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  157 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~  157 (279)
                      +++++||+||++...|.+...      ..+...++++++.|.++. |+.+|+..
T Consensus        80 ~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           80 AAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             HHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             HHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            789999999999987754322      123455667777777765 45555544

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.26  E-value=1.9e-06  Score=77.07  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=57.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC--CCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~--ADiVIitag  118 (279)
                      .+||.|+||+|++|++++..|+..|+  +|+++|++...+   ....    ..+.   ...++.+++++  +|+||++||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~~~~----~Dl~---d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---KFEQ----VNLL---DSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---CeEE----ecCC---CHHHHHHHHHhhCCCEEEECCc
Confidence            36899999999999999999999987  999999754221   0000    1111   11234456664  899999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .....  ..+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64321  123345677899999999999988754  455444

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.26  E-value=2.2e-06  Score=76.54  Aligned_cols=163  Identities=16%  Similarity=0.074  Sum_probs=92.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhC--CCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~--~ADiVIitag  118 (279)
                      |||.|+||+|++|++++..|+..|+  +|+++|+.... ....+.. . ...+.. .....++.++++  ++|+||++|+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~-~-~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPK-G-VPFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCT-T-CCEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhccc-C-eEEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            5899999999999999999999998  99999874311 1111110 0 000110 000112345566  8999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC-------CCC-chHHHHHHHHHHhCCCCCCCeeeecc
Q 023671          119 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-------PVN-STVPIAAEVFKKAGTYDPKKLLGVTM  188 (279)
Q Consensus       119 ~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN-------Pvd-~~t~~~~~~~~~~~~~~~~kViG~t~  188 (279)
                      .....  ..+....+..|+.....+++.+.+.....+|.+.|-       +.+ .++        .....++...+|.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~--------E~~~~~~~~~Y~~sK  147 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAE--------ETWPPRPKSPYAASK  147 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBC--------TTSCCCCCSHHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcC--------CCCCCCCCChHHHHH
Confidence            54211  012345677899999999999887654444433331       000 000        000111233455554


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          189 LDVVRANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       189 lds~R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                      ....++-..+++..|++..-++ +.++|..
T Consensus       148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          148 AAFEHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            4444454555666777666666 5577864

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.25  E-value=1.3e-06  Score=77.32  Aligned_cols=99  Identities=21%  Similarity=0.198  Sum_probs=70.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIit  116 (279)
                      .+.+||.|+||+|++|++++..|+..|+  +|+++|+++     .|+.+.            .++.++++  ++|+||++
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d~------------~~~~~~~~~~~~d~vih~   70 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVINC   70 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEEEC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCCH------------HHHHHHHHhcCCCEEEEC
Confidence            3468999999999999999999999887  999998752     233321            12345566  79999999


Q ss_pred             cCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |+.....  ..+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        71 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           71 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            9864211  112345678899999999999988764  444443

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.24  E-value=4.2e-06  Score=74.73  Aligned_cols=112  Identities=9%  Similarity=-0.024  Sum_probs=68.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCc---hh-HHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT---PG-VTADISHMDTGAVVRGFL----GQPQLENALTGMDL  112 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~-~~~---~g-~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADi  112 (279)
                      +||.|+||+|++|++++..|+..|+  +|+.+++ +..   .. ...++...  ...+..+.    ...++.++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            5899999999999999999999998  8988876 431   01 11111100  01122211    11245677899999


Q ss_pred             EEEccCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHh-CCCceEEEec
Q 023671          113 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (279)
Q Consensus       113 VIitag~~~k~g~~-r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~T  158 (279)
                      ||++|+.......+ ..+.+..|+.....+++.+.+. ... .||++|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~-~iV~~S  124 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVK-RFIYTS  124 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCC-EEEEEE
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEec
Confidence            99999643111111 2347788999999999998876 333 444443

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.23  E-value=2.9e-06  Score=78.30  Aligned_cols=173  Identities=16%  Similarity=0.098  Sum_probs=95.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCch----------hHHhh-hhcccC---CCe---EEEEeC-CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTP----------GVTAD-ISHMDT---GAV---VRGFLG-QP  101 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~~~----------g~~~D-L~~~~~---~~~---v~~~~~-~~  101 (279)
                      .|+|.|+||+|++|++++..|+ ..|+  +|+++|++...          ....+ +.....   ...   +..+.+ -.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            3699999999999999999999 8887  99999976421          11111 111100   001   332221 12


Q ss_pred             C---HHhhhC--C-CCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHH----HH
Q 023671          102 Q---LENALT--G-MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI----AA  169 (279)
Q Consensus       102 d---~~eal~--~-ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~----~~  169 (279)
                      |   +.++++  + +|+||++|+.....  .....+.+..|+.....+++.+.+.....+|.+.|.  .+....    ..
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~--~v~g~~~~~~~~  157 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSA--AIFGNPTMGSVS  157 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG--GGTBSCCC----
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCH--HHhCCCCccccc
Confidence            2   334555  6 99999999864211  012345778899999999999887654444444331  110000    00


Q ss_pred             ---HHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          170 ---EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       170 ---~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                         ..+.......+...+|.+.....++-..+++.++++..-++ +.|+|.+
T Consensus       158 ~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~  209 (397)
T 1gy8_A          158 TNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (397)
T ss_dssp             -CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             ccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence               00000000112334454544445555566666777666665 5677765

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.22  E-value=1.9e-06  Score=78.98  Aligned_cols=114  Identities=17%  Similarity=0.205  Sum_probs=76.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEeC-CC---CHHhhhCCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QP---QLENALTGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~-~~---d~~eal~~AD  111 (279)
                      .+.++|.|+||+|++|++++..|+.. |. .+|+++|+++..  ....++..    ..++.+.+ -.   .+.++++++|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D   93 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVD   93 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCC
Confidence            44579999999999999999999887 63 389999987521  11122221    22333211 11   2446788999


Q ss_pred             EEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671          112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus       112 iVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~  157 (279)
                      +||++|+....+.  ....+.+..|+.....+++...+.....+|.+.
T Consensus        94 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~S  141 (344)
T 2gn4_A           94 ICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALS  141 (344)
T ss_dssp             EEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            9999998653211  123467788999999999999887654444443

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.22  E-value=6.2e-06  Score=78.94  Aligned_cols=116  Identities=13%  Similarity=0.056  Sum_probs=77.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhC---CCCcEEEEEeCCCchhH-Hhhhhccc--------------CCCeEEEEeCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKIN---PLVSVLHLYDVVNTPGV-TADISHMD--------------TGAVVRGFLGQ  100 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~---~~~~ev~L~D~~~~~g~-~~DL~~~~--------------~~~~v~~~~~~  100 (279)
                      .++++|.|+||+|++|+.++..|+..   |.  +|+++++++.... ...+.+..              ....+..+.+.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            45789999999999999999999887   55  9999998762111 11111110              01234433221


Q ss_pred             -C---------CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          101 -P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       101 -~---------d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                       +         ++.+.++++|+||++|+....  ....+.+..|+.....+++.+.+...+.+|.+.|
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence             1         234566799999999987533  2334567889999999999998866555555555

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.21  E-value=1.9e-06  Score=79.65  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=72.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh------------------HHhhhhcccCCCeEEEEeC-
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTGAVVRGFLG-   99 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g------------------~~~DL~~~~~~~~v~~~~~-   99 (279)
                      .++++|.|+||+|++|++++..|+..|+  +|+++|+.....                  ...++.... ...+..+.+ 
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~D   85 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGD   85 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESC
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECC
Confidence            4567999999999999999999999997  999999753110                  011111000 112222211 


Q ss_pred             CCC---HHhhhCC--CCEEEEccCCCCCC--CCch---hhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          100 QPQ---LENALTG--MDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       100 ~~d---~~eal~~--ADiVIitag~~~k~--g~~r---~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      -.|   +.+++++  +|+||++||.....  ..+.   ...+..|+.....+++.+.+......+|++|.
T Consensus        86 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS  155 (404)
T 1i24_A           86 ICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  155 (404)
T ss_dssp             TTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            122   3445666  99999999864211  0111   13567899999999999988765335555543

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.21  E-value=1.7e-06  Score=76.31  Aligned_cols=96  Identities=22%  Similarity=0.232  Sum_probs=70.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~  119 (279)
                      |||.|+||+|++|++++..|+..|+  +|+.+++.+     .|+.+..            ++.++++  ++|+||++|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~~------------~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNIS------------QVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCHH------------HHHHHHHhcCCCEEEECCcc
Confidence            4899999999999999999998887  999998733     2333221            2345565  79999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            5321  123456778899999999999998765  344443

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.21  E-value=7.9e-06  Score=73.56  Aligned_cols=109  Identities=15%  Similarity=0.083  Sum_probs=71.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC--CC---CHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--QP---QLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~--~~---d~~eal~~ADiVIi  115 (279)
                      |||.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+.+  ++   .+.++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999987 77  999999875211  11111   112332211  11   14456789999999


Q ss_pred             ccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          116 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       116 tag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +|+.....  ..+..+.+..|+.....+++.+.+..  ..+|++|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            99864211  01234566778888889999888765  45555553

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.18  E-value=5.3e-06  Score=69.73  Aligned_cols=105  Identities=11%  Similarity=0.068  Sum_probs=70.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiVIit  116 (279)
                      ++||.|+||+|++|++++..|+.++...+|+++++++..      .    ...+..+..    ..++.+++  +|+||++
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~----~~~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------E----HPRLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------C----CTTEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------c----CCCceEEeccccCHHHHHHhh--hcEEEEC
Confidence            469999999999999999999999865689999987532      0    011221111    01122233  8999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +|.......+..+.+..|+.....+++.+.+.... .++++|
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  113 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVS  113 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            98653222334567788999999999999876544 344444

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.18  E-value=5.6e-06  Score=71.00  Aligned_cols=113  Identities=17%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~--~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIit  116 (279)
                      ++++|.|+||+|++|++++..|+..  +.  +|+++++++..  ..++.. . ...+.. .....++.++++++|+||++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~--~~~~~~-~-~~~~~~D~~d~~~~~~~~~~~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQG--KEKIGG-E-ADVFIGDITDADSINPAFQGIDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHH--HHHTTC-C-TTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCc--hhhcCC-C-eeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence            4579999999999999999999998  56  99999986521  112211 0 011111 01112355678999999999


Q ss_pred             cCCCCC------------CCCc---hhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRK------------PGMT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k------------~g~~---r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +|....            +...   -.+.+..|+.....+++.+.+.....+|.+.|
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  133 (253)
T 1xq6_A           77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS  133 (253)
T ss_dssp             CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            986421            1100   01346788888999999998876444443333

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.18  E-value=1.2e-06  Score=75.58  Aligned_cols=95  Identities=20%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L-~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      ++++|||+|||+ |.+|..++..|...|+  +|.+ +|+++.  +....++.     ....    .++ .++++++|+||
T Consensus        20 ~m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-----~~~~----~~~-~~~~~~aDvVi   86 (220)
T 4huj_A           20 FQSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-----ASVK----AVE-LKDALQADVVI   86 (220)
T ss_dssp             GGGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-----TTEE----ECC-HHHHTTSSEEE
T ss_pred             hhcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-----CCcc----cCh-HHHHhcCCEEE
Confidence            345689999998 9999999999999887  8888 898762  22222221     1111    123 46789999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      ++..    +            ..+.++++.+.. .++.+++.++||..
T Consensus        87 lavp----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           87 LAVP----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             EESC----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             EeCC----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            9862    1            123455555554 45678888899985

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.18  E-value=1.6e-05  Score=70.95  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC----CC-----eEEEEeCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----GA-----VVRGFLGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~----~~-----~v~~~~~~~d~~eal~~A  110 (279)
                      ++|||+|||+ |.+|+.++..|...|+  +|.++|+++..  ...+.....    ..     .+.... ..+..++++++
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   75 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAH--IEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQV   75 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhCCEEEEeCCCeeEecceeec-chhhcccCCCC
Confidence            3579999998 9999999999999998  99999987521  111111100    00     011111 11122234599


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~  163 (279)
                      |+||++...                ..+.++++.+.+.. |+.+++..+|..+.
T Consensus        76 d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           76 DLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             SEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             CEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            999998631                12456667777664 67788888888774

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.18  E-value=1e-05  Score=69.64  Aligned_cols=103  Identities=19%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHhhhhcccCCCeEEEEeCCCCHHhhh----CCCCEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLENAL----TGMDLVI  114 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g---~~~DL~~~~~~~~v~~~~~~~d~~eal----~~ADiVI  114 (279)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++....   ...|+.+..            ++.+++    .+.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~~------------~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRET------------AVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccHH------------HHHHHHHHcCCCccEEE
Confidence            4899999999999999999999997  999999876211   112333211            122333    3899999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      ++||..... ......+..|+.....+++.+.+.   ...+.++++|.
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           68 CCAGVGVTA-ANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             ECCCCCTTS-SCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             ECCCCCCcc-hhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            999875422 224556777877777777665554   22345555543

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.18  E-value=1.9e-06  Score=76.32  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC--CCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~--ADiVIitag~  119 (279)
                      |||.|+||+|++|++++..|+ +|+  +|+.+|++.. ....|+.+.            .++.+++++  +|+||++|+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d~------------~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCCH------------HHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999998 786  9999998651 111222221            124456665  9999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            4311  123456778899999999999987654  454444

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.16  E-value=1.8e-06  Score=76.85  Aligned_cols=167  Identities=14%  Similarity=0.125  Sum_probs=93.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhC--CCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~--~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~--~ADiVIi  115 (279)
                      +|||.|+||+|++|++++..|+..  ++  +|+++|++.....   +...  ...+.. .....++.++++  ++|+||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~---~~~~--~~~~~~D~~d~~~~~~~~~~~~~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTD---VVNS--GPFEVVNALDFNQIEHLVEVHKITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCH---HHHS--SCEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccc---ccCC--CceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence            368999999999999999999887  66  8999998652211   1110  011111 000112345566  8999999


Q ss_pred             ccCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHH-HHHHHhCCCCCCCeeeecchhHHH
Q 023671          116 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA-EVFKKAGTYDPKKLLGVTMLDVVR  193 (279)
Q Consensus       116 tag~~~k~-g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~-~~~~~~~~~~~~kViG~t~lds~R  193 (279)
                      +|+..... ..+..+.+..|+.....+++.+.+.... .++++|... +...--. ..........+...+|.+.+...+
T Consensus        75 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~-~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~  152 (312)
T 2yy7_A           75 MAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIA-VFGPTTPKENTPQYTIMEPSTVYGISKQAGER  152 (312)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGG-GCCTTSCSSSBCSSCBCCCCSHHHHHHHHHHH
T ss_pred             CCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHH-HhCCCCCCCCccccCcCCCCchhHHHHHHHHH
Confidence            99864211 1223456788999999999999876543 344443211 0000000 000000001223344544444444


Q ss_pred             HHHHHHHHcCCCCCCCc-ceeecC
Q 023671          194 ANTFVAEVLGLDPRDVD-VPVVGG  216 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V~-~~ViGe  216 (279)
                      +-..+++..|++..-++ +.++|.
T Consensus       153 ~~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          153 WCEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHHHhcCCcEEEEeCCeEecC
Confidence            54555566677766666 668884

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.16  E-value=4.5e-06  Score=73.74  Aligned_cols=101  Identities=16%  Similarity=0.057  Sum_probs=67.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCEEEEc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVIIP  116 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADiVIit  116 (279)
                      |||.|+||+|++|++++..|... +.  +|++++++....  .++...    .++.+.    ...++.++++++|+||++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            58999999999999999998887 76  899998875211  112111    122211    112356688999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++....        ...|+...+.+++.+++.....+|.+.|
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss  106 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVAHIIFIGY  106 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            875421        1347788889999998876554444433

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.16  E-value=6.3e-06  Score=69.89  Aligned_cols=99  Identities=17%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |||+||||+|.+|+.++..|...++  +|.++|+++.  .....++........+..    +++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            5899999559999999999998887  9999998752  111111110000012321    2466788999999998631


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      .                ..+++++.+.+..++.+++..+|+.+
T Consensus        75 ~----------------~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 E----------------HAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             H----------------HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             h----------------hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            1                12233344443335778888898775

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.16  E-value=1.8e-05  Score=72.16  Aligned_cols=116  Identities=16%  Similarity=0.019  Sum_probs=69.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHhhhhccc--CCCeEEEEeC-CCC---HHhhhCC--
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD--TGAVVRGFLG-QPQ---LENALTG--  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---g~~~DL~~~~--~~~~v~~~~~-~~d---~~eal~~--  109 (279)
                      |++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....  ....+..+.+ -.|   +.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            46899999999999999999999987  99999986521   1111111100  0122333211 112   3344554  


Q ss_pred             CCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCC--ceEEEec
Q 023671          110 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPN--ATVNLIS  158 (279)
Q Consensus       110 ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~--a~viv~T  158 (279)
                      .|+||++||.....  ..+....+..|+.....+++.+.+...+  ..++++|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            69999999864321  1223456678989999999999887542  4555554

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.15  E-value=5.1e-06  Score=72.79  Aligned_cols=93  Identities=16%  Similarity=0.239  Sum_probs=66.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~--~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +++|||+|||+ |.+|+.++..|...++.  .+|.++|+++..       .     .+..   .++..++++++|+||++
T Consensus         2 m~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~-----g~~~---~~~~~~~~~~~D~vi~~   65 (262)
T 2rcy_A            2 MENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T-----TLNY---MSSNEELARHCDIIVCA   65 (262)
T ss_dssp             CSSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S-----SSEE---CSCHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C-----ceEE---eCCHHHHHhcCCEEEEE
Confidence            34579999999 99999999999887731  389999987632       1     1121   23566788999999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      .. +   .            .++++++.+....++..++..+|.++.
T Consensus        66 v~-~---~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           66 VK-P---D------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             SC-T---T------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             eC-H---H------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            73 1   1            134555666666677788888888775

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.15  E-value=1.1e-05  Score=73.29  Aligned_cols=68  Identities=19%  Similarity=0.285  Sum_probs=51.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .++|||+|||+ |.+|..++..|...|+  +|.++|+++.  ...++....    +..   .+++.+++++||+||++..
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~l~~~g----~~~---~~~~~e~~~~aDvVi~~vp   96 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPA--RAASLAALG----ATI---HEQARAAARDADIVVSMLE   96 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CEE---ESSHHHHHTTCSEEEECCS
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHCC----CEe---eCCHHHHHhcCCEEEEECC
Confidence            35679999998 9999999999999998  9999998752  122222221    222   2467888999999999863

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.15  E-value=9.6e-07  Score=78.07  Aligned_cols=106  Identities=10%  Similarity=0.055  Sum_probs=66.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCC-CCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTG-MDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~-ADiVIita  117 (279)
                      ++|||.|+|+ |++|++++..|+..|+  +|+.++++...     +.. . ...+.. .....++.+++++ +|+||++|
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~-~-~~~~~~Dl~d~~~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MPA-G-VQTLIADVTRPDTLASIVHLRPEILVYCV   71 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CCT-T-CCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----ccc-C-CceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence            3579999996 9999999999999998  99999987521     000 0 000110 0001123445666 99999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +...   .+..+.+..|+...+.+++.+.+.....+|.+.|
T Consensus        72 ~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           72 AASE---YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             HHHH---HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             CCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence            7531   1223455678999999999998755444444333

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.14  E-value=8.1e-06  Score=73.04  Aligned_cols=98  Identities=12%  Similarity=0.172  Sum_probs=66.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +++||+|||+ |.+|..++..|...|+ ..+|.++|+++..  ..++....   .+..   +++..+++++||+||++. 
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~~---gi~~---~~~~~~~~~~aDvVilav-   71 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEKC---GVHT---TQDNRQGALNADVVVLAV-   71 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHTT---CCEE---ESCHHHHHSSCSEEEECS-
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHHc---CCEE---eCChHHHHhcCCeEEEEe-
Confidence            3579999999 9999999999999885 4589999998621  12222211   1222   235678899999999987 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCceEEEecCCCC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVN  162 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TNPvd  162 (279)
                         ++            ..+.++++.+..+  .++.+++..++.+.
T Consensus        72 ---~p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           72 ---KP------------HQIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             ---CG------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             ---CH------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence               22            1244555666654  45667776666665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.14  E-value=2.9e-05  Score=74.20  Aligned_cols=112  Identities=15%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----------------CCCeEEEEeCCCCHH
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLE  104 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~~~d~~  104 (279)
                      ..+|+|||+ |.+|..+|..|+..|+  +|+++|+++.+-  ..|....                ....++.   ++|+.
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv--~~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~~   79 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKI--ELLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDLA   79 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTH--HHHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCHH
Confidence            358999998 9999999999999998  999999987221  1111110                0123443   35777


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCchH
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTV  165 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~t  165 (279)
                      +++++||+||++.+.|.+.+...     -+...+++.++.|.++. |+.+|+.. |-|.+..-
T Consensus        80 ea~~~aDvvii~Vptp~~~~~~~-----~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~  137 (446)
T 4a7p_A           80 EGVKDADAVFIAVGTPSRRGDGH-----ADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGD  137 (446)
T ss_dssp             HHHTTCSEEEECCCCCBCTTTCC-----BCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHH
T ss_pred             HHHhcCCEEEEEcCCCCccccCC-----ccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHH
Confidence            89999999999988875431111     23445666667777665 45555544 45555433

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.13  E-value=5.3e-06  Score=75.02  Aligned_cols=113  Identities=19%  Similarity=0.102  Sum_probs=71.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--------hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------PGVTADISHMDTGAVVRGFL-GQPQ---LENALT  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--------~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~  108 (279)
                      ++||.|+||+|++|++++..|+..|+  +|+++|++..        .....++.... ...+..+. .-+|   +.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~   78 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFK   78 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHH
Confidence            36899999999999999999999987  8999987531        11122222110 11122211 1122   344566


Q ss_pred             --CCCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          109 --GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       109 --~ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                        ++|+||++|+.....  .....+.+..|+.....+++.+.+.....+|.+
T Consensus        79 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~  130 (348)
T 1ek6_A           79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS  130 (348)
T ss_dssp             HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             hcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence              899999999864211  012345678899999999999887654444443

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.12  E-value=3.8e-06  Score=75.87  Aligned_cols=103  Identities=21%  Similarity=0.237  Sum_probs=68.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhh
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENAL  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~-------~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal  107 (279)
                      .++|+|.|+||+|++|++++..|+..|       .  +|+++|++......  .    ....+..+..    ..++.+++
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~--~----~~~~~~~~~~Dl~d~~~~~~~~   83 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA--G----FSGAVDARAADLSAPGEAEKLV   83 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT--T----CCSEEEEEECCTTSTTHHHHHH
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc--c----cCCceeEEEcCCCCHHHHHHHH
Confidence            456799999999999999999999888       5  89999986521110  0    1122332211    12344556


Q ss_pred             -CCCCEEEEccCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          108 -TGMDLVIIPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       108 -~~ADiVIitag~~~k~-g~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                       .++|+||++|+..... ..+..+.+..|+.....+++.+.+..
T Consensus        84 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~  127 (342)
T 2hrz_A           84 EARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIAN  127 (342)
T ss_dssp             HTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence             4899999999864310 01234456789888899998888765

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.11  E-value=1.4e-05  Score=69.87  Aligned_cols=99  Identities=16%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hH----------HhhhhcccCCCeEEEEeCCCCHHhh
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV----------TADISHMDTGAVVRGFLGQPQLENA  106 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~----------~~DL~~~~~~~~v~~~~~~~d~~ea  106 (279)
                      ...+||+|||+ |.+|..++..|+..|+  +|.++|+++..  ..          ..++....  .....    .+..++
T Consensus        17 ~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~e~   87 (245)
T 3dtt_A           17 FQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH--PHVHL----AAFADV   87 (245)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS--TTCEE----EEHHHH
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc--Cceec----cCHHHH
Confidence            44679999998 9999999999999998  99999987522  00          12222111  11121    245788


Q ss_pred             hCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      +++||+||++....    .        -.+.+.++.   ....++.+|+.++||.
T Consensus        88 ~~~aDvVilavp~~----~--------~~~~~~~i~---~~~l~g~ivi~~s~~~  127 (245)
T 3dtt_A           88 AAGAELVVNATEGA----S--------SIAALTAAG---AENLAGKILVDIANPL  127 (245)
T ss_dssp             HHHCSEEEECSCGG----G--------HHHHHHHHC---HHHHTTSEEEECCCCE
T ss_pred             HhcCCEEEEccCcH----H--------HHHHHHHhh---hhhcCCCEEEECCCCC
Confidence            99999999986321    0        112333331   2222778999999987

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.11  E-value=7.5e-06  Score=78.49  Aligned_cols=118  Identities=17%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHh-------------hhhcccCCCeEEEEeCCCCHHh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTA-------------DISHMDTGAVVRGFLGQPQLEN  105 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~--~~~~ev~L~D~~~~~g~~~-------------DL~~~~~~~~v~~~~~~~d~~e  105 (279)
                      +|||+|||+ |.||..+|..|+..  |+  +|+++|+++.+....             ++........++.   ++++.+
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~~~e   78 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF---STNIDD   78 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHHH
Confidence            579999998 99999999999887  56  999999976211110             0110000012433   346777


Q ss_pred             hhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCchH
Q 023671          106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTV  165 (279)
Q Consensus       106 al~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~t  165 (279)
                      ++++||+||++.+.|........+ -..+...+.+.++.+.+.. |+.+|+.. |+|.+...
T Consensus        79 ~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~  139 (467)
T 2q3e_A           79 AIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAE  139 (467)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHH
T ss_pred             HHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHH
Confidence            899999999998766532210000 0123345666677777654 45555544 67776643

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.09  E-value=1.2e-05  Score=73.66  Aligned_cols=101  Identities=20%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCc-----hhHHhhhhccc--------CCCeEEEEeC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD--------TGAVVRGFLG   99 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~-------~~~ev~L~D~~~~-----~g~~~DL~~~~--------~~~~v~~~~~   99 (279)
                      .+|||+|||+ |.+|+.++..|...|       +  +|.++|+++.     ......-.+..        ....+..   
T Consensus         7 ~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---   80 (354)
T 1x0v_A            7 ASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA---   80 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE---
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE---
Confidence            3469999998 999999999998877       5  9999998763     22222111100        0112333   


Q ss_pred             CCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       100 ~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                      ++++.+++++||+||++...                ..++++++.+.... |+.+++..+|..+
T Consensus        81 ~~~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           81 VPDVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             ESSHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             EcCHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            24667789999999998621                12455666776654 5778888888554

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.08  E-value=1.6e-05  Score=68.04  Aligned_cols=77  Identities=25%  Similarity=0.350  Sum_probs=56.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      .++||+|||+ |.+|+.++..|...++  +|.++|+++.                           ++++||+||++.. 
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-   66 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-   66 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-
Confidence            3569999998 9999999999999987  9999987532                           3578999999863 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      +               ..++++++.+.+..++.+++..+|+.+
T Consensus        67 ~---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 Y---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             H---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             c---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            1               113344444544334778888899765

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.06  E-value=1.7e-05  Score=72.02  Aligned_cols=119  Identities=15%  Similarity=0.133  Sum_probs=71.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHh---hhhcccCCCeEEE--EeCCCCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTGAVVRG--FLGQPQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~---DL~~~~~~~~v~~--~~~~~d~~eal~~ADiVIi  115 (279)
                      +|||+|||+ |.+|..++..|...|.  +|.++|+++......   .+... .......  ...+++.+++.+++|+||+
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~Gl~~~~~-~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDYETVKAKGIRIRSA-TLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTHHHHHHHCEEEEET-TTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChHHHHHhCCcEEeec-CCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            379999999 9999999999999987  999999876211100   01110 0111111  1112354454459999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      +.-..    .            +.++++.+..+ .|+..|+.+.|-++....+     .+.  +|.++|++-
T Consensus        78 avK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l-----~~~--~~~~~vl~g  126 (320)
T 3i83_A           78 CIKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEPEV-----AAA--FPDNEVISG  126 (320)
T ss_dssp             CCCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHHH-----HHH--STTSCEEEE
T ss_pred             ecCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHHH-----HHH--CCCCcEEEE
Confidence            86322    1            11334445544 3677888889998865422     322  556677654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.06  E-value=1.1e-05  Score=72.89  Aligned_cols=68  Identities=12%  Similarity=0.169  Sum_probs=51.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .++|||+|||+ |.+|..++..|...|+  +|.++|+++...  .++....    +..   .+++.+++++||+||++..
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~l~~~g----~~~---~~~~~~~~~~aDvvi~~vp   86 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKC--DELVEHG----ASV---CESPAEVIKKCKYTIAMLS   86 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHCC----CeE---cCCHHHHHHhCCEEEEEcC
Confidence            35679999998 9999999999999998  999999976221  2222211    122   3467788999999999863

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.05  E-value=9.5e-06  Score=71.33  Aligned_cols=103  Identities=12%  Similarity=0.079  Sum_probs=67.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE--eCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF--LGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~--~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~--~~~~d~~eal~~ADiVIita  117 (279)
                      |||.|+||+|++|++++..|+..  |+  +|++++++.....  ++....  ..+...  ....++.++++++|+||+++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~--~~~~~~D~~d~~~l~~~~~~~d~vi~~a   74 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQG--VEVRHGDYNQPESLQKAFAGVSKLLFIS   74 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTT--CEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcC--CeEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence            47999999999999999999887  76  8999998752211  121111  111110  11123556789999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +..  .+    +  ..|+...+.+++.+.+.....+|.+.|
T Consensus        75 ~~~--~~----~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss  107 (287)
T 2jl1_A           75 GPH--YD----N--TLLIVQHANVVKAARDAGVKHIAYTGY  107 (287)
T ss_dssp             CCC--SC----H--HHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CCC--cC----c--hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            753  11    1  358888889999988765544444433

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=98.05  E-value=1.2e-05  Score=72.57  Aligned_cols=114  Identities=17%  Similarity=0.128  Sum_probs=70.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC--CCCEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV  113 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~--~ADiV  113 (279)
                      |||.|+||+|++|++++..|+..|+  +|+++|...  ......++.... ...+..+. .-+|   +.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999998  999998643  111111222110 01122111 1122   334454  58999


Q ss_pred             EEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       114 Iitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |++||.....  .....+.+..|+.....+++.+++.....+|.+.|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  124 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS  124 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            9999864211  01234567889999999999988776444444333

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.03  E-value=1.6e-05  Score=73.66  Aligned_cols=101  Identities=13%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCc-h--hHHhhhhcc--c--------CCCeEEEEeCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-P--GVTADISHM--D--------TGAVVRGFLGQ  100 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-------~~~ev~L~D~~~~-~--g~~~DL~~~--~--------~~~~v~~~~~~  100 (279)
                      ++||+|||+ |.+|+.++..|+..|       +  +|.++|+++. .  .....+...  .        ....+..   +
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~   94 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---H   94 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---E
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---E
Confidence            459999998 999999999998877       5  8999998753 0  022222211  0        0112443   2


Q ss_pred             CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHH----hC-CCceEEEecCCCCc
Q 023671          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK----CC-PNATVNLISNPVNS  163 (279)
Q Consensus       101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~----~~-p~a~viv~TNPvd~  163 (279)
                      +++.+++++||+||++..                ...++++++.+..    .. |+.+++..+|.++.
T Consensus        95 ~~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           95 SDLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             SSTHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             CCHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            456678999999999862                1246677777775    44 57788888876543

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=98.03  E-value=5.3e-06  Score=76.27  Aligned_cols=115  Identities=13%  Similarity=-0.055  Sum_probs=70.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHhhhhccc--CCC-eEEEEeC-CCC---HHhhhCC--
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD--TGA-VVRGFLG-QPQ---LENALTG--  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g---~~~DL~~~~--~~~-~v~~~~~-~~d---~~eal~~--  109 (279)
                      ++|.|+||+|++|++++..|+..|+  +|+++|++....   ...++....  ... .+..+.+ -.|   +.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999999997  999999865211   111111000  001 2333221 122   3345554  


Q ss_pred             CCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC----CceEEEec
Q 023671          110 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP----NATVNLIS  158 (279)
Q Consensus       110 ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p----~a~viv~T  158 (279)
                      .|+||++|+.....  ..+....+..|+.....+++.+.+...    .+.||++|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999864311  012334567788888888888876542    34555554

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.02  E-value=4.8e-05  Score=67.07  Aligned_cols=117  Identities=18%  Similarity=0.215  Sum_probs=71.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-------  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++........+..+. .-+|.   .+++       
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999999997  9999998752  22222333221112333221 11222   2222       


Q ss_pred             CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCC-CceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCP-NATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p-~a~viv~TN  159 (279)
                      .+.|+||++||......   .+   -...+..|+..    .+.+++.+.+... .+.|+++|.
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS  172 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  172 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence            37999999998653211   12   12345666655    7788888877653 466666654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.01  E-value=1.3e-05  Score=71.47  Aligned_cols=65  Identities=8%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+.+..    +..   .+++.+++++||+||++..
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~g----~~~---~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKA--EELAALG----AER---AATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEEcC
Confidence            69999998 9999999999999998  999999976221  2222211    222   3467888999999999863

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.01  E-value=1.7e-05  Score=73.08  Aligned_cols=104  Identities=13%  Similarity=0.245  Sum_probs=65.3

Q ss_pred             CCCCCCc-EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc----------cCCCeEEEEeCCCCHH
Q 023671           36 KGGAAGF-KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----------DTGAVVRGFLGQPQLE  104 (279)
Q Consensus        36 ~~~~~~~-KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~----------~~~~~v~~~~~~~d~~  104 (279)
                      ++..++| ||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+.+.          .....+..   ++++.
T Consensus         9 ~~~~m~M~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~   80 (366)
T 1evy_A            9 KDELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEV--RLVNEKRENVLFLKGVQLASNITF---TSDVE   80 (366)
T ss_dssp             CCCCCCEEEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHH--HHHHHHTBCTTTSTTCBCCTTEEE---ESCHH
T ss_pred             hhHhhccCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHcCcccccccccccccceee---eCCHH
Confidence            3444445 9999999 9999999999998887  999999875211  111110          00112333   24666


Q ss_pred             hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHH----HHHhC-C-CceEEEecCCCCc
Q 023671          105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG----IAKCC-P-NATVNLISNPVNS  163 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~----I~~~~-p-~a~viv~TNPvd~  163 (279)
                      ++++++|+||++..    +            ..++++++.    +.... | +.+++.++|-++.
T Consensus        81 ~~~~~aDvVilav~----~------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           81 KAYNGAEIILFVIP----T------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHTTCSSEEECCC----H------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHcCCCEEEECCC----h------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            78999999999862    1            123334444    43332 5 6778888876543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.01  E-value=2.1e-05  Score=69.38  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC-CC--eEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GA--VVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~-~~--~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+|||+ |.+|+.++..|...|+  +|.++|+++....  ++..... ..  .....  .++ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEec
Confidence            58999999 9999999999999998  9999998762111  1211110 01  11111  124 467899999999873


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCch
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  164 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~  164 (279)
                      ..    .            +.++++.+.... |+.+++..+|.++..
T Consensus        73 ~~----~------------~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           73 AW----Q------------VSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             GG----G------------HHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             HH----h------------HHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence            21    0            345556666554 677888889987654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.00  E-value=2.5e-05  Score=71.05  Aligned_cols=93  Identities=18%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHh-hhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLEN-ALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~e-al~~ADiVIitag  118 (279)
                      .+||+|||+ |.+|..++..|...|+..+|+++|+++. ...+.++.   ...  ..   ++++.+ ++++||+||++..
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G---~~~--~~---~~~~~~~~~~~aDvVilavp  103 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG---IID--EG---TTSIAKVEDFSPDFVMLSSP  103 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT---SCS--EE---ESCTTGGGGGCCSEEEECSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC---Ccc--hh---cCCHHHHhhccCCEEEEeCC
Confidence            469999998 9999999999999997669999999762 11122111   100  11   135567 7999999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T  158 (279)
                      ..                .+.++++.+..+. |+++|+.++
T Consensus       104 ~~----------------~~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          104 VR----------------TFREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             GG----------------GHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HH----------------HHHHHHHHHhhccCCCcEEEECC
Confidence            11                1234445555544 677666544

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.00  E-value=1.4e-05  Score=70.92  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=68.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEE--eCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGF--LGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~--~~~~d~~eal~~ADiVIita  117 (279)
                      +++|.|+||+|++|++++..|+..| +  +|++++++.......++....  ..+...  ....++.++++++|+||+++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~--~~~~~~D~~d~~~l~~~~~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQG--AEVVQGDQDDQVIMELALNGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCC--CEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence            3689999999999999999998877 6  999999876322222232211  111111  11123556789999999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +.....      ....|+...+.+++.+++.... .+++.|
T Consensus        81 ~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           81 NYWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             CHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             CCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            642111      1345777888888888877644 344444

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.99  E-value=1.1e-05  Score=73.38  Aligned_cols=96  Identities=16%  Similarity=0.175  Sum_probs=69.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CC---CHHhhhCC---
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTG---  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~-----~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~---d~~eal~~---  109 (279)
                      |||.|+||+|++|++++..|+..|     +  +|+++|++.....   +.    ...++.+.+ -.   ++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~----~~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HE----DNPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CC----SSCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---cc----cCceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998888     6  9999998762111   11    112222111 11   24466777   


Q ss_pred             CCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       110 ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                      +|+||++|+...   .+..+.+..|+.....+++.+.+.+
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~  109 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNC  109 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhc
Confidence            999999998652   3456678899999999999999874

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.99  E-value=3.4e-05  Score=68.46  Aligned_cols=135  Identities=16%  Similarity=0.179  Sum_probs=78.7

Q ss_pred             CCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEE
Q 023671           20 PPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF   97 (279)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~   97 (279)
                      ||--|+.+|++....+.-..+.+++.|+||+|.+|..++..|++.|.  +|++.|+++  ......++....  ..+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~   87 (275)
T 4imr_A           12 DLGTENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQEL   87 (275)
T ss_dssp             ------CCSCTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEE
T ss_pred             CccccccccccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEE
Confidence            56677888877666554445667899999999999999999999998  999999987  233333443321  222222


Q ss_pred             eC-CCC---HHhhh------CCCCEEEEccCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEe
Q 023671           98 LG-QPQ---LENAL------TGMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus        98 ~~-~~d---~~eal------~~ADiVIitag~~~k~g---~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~  157 (279)
                      .. .+|   ..+.+      ...|++|++||......   .+..   ..+..|+.    +.+...+.+.+.. .+.||++
T Consensus        88 ~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~i  166 (275)
T 4imr_A           88 AGDLSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK-WGRVVSI  166 (275)
T ss_dssp             ECCTTSTTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEE
T ss_pred             EecCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEE
Confidence            11 111   22222      37899999999753221   1222   23455544    5555555555543 4666666


Q ss_pred             cC
Q 023671          158 SN  159 (279)
Q Consensus       158 TN  159 (279)
                      |.
T Consensus       167 sS  168 (275)
T 4imr_A          167 GS  168 (275)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.98  E-value=1.5e-05  Score=68.72  Aligned_cols=99  Identities=16%  Similarity=0.160  Sum_probs=63.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiVI  114 (279)
                      ++++|.|+||+|++|+.++..|+..| .  +|+++++++...  .++..    ..+..+..    ..++.++++++|+||
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~--~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~D~vv   93 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKI--HKPYP----TNSQIIMGDVLNHAALKQAMQGQDIVY   93 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGS--CSSCC----TTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhh--ccccc----CCcEEEEecCCCHHHHHHHhcCCCEEE
Confidence            35689999999999999999999988 6  999999875211  11111    12222211    123456789999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ++++..      ..+      ...+.+++.+++.... .||++|.
T Consensus        94 ~~a~~~------~~~------~~~~~~~~~~~~~~~~-~iV~iSS  125 (236)
T 3qvo_A           94 ANLTGE------DLD------IQANSVIAAMKACDVK-RLIFVLS  125 (236)
T ss_dssp             EECCST------THH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EcCCCC------chh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence            998642      111      2245677777766544 4555443

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.98  E-value=2.4e-05  Score=67.51  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=68.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...   ..+..+. .-+|   +.+.+      
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  8999998752  1122222211   1233221 1122   22222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                       ...|+||++||.....   ..+   ....+..|+.    +.+.+.+.+.+....+.|+++|..
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence             3589999999875321   112   1335566765    455555555544332566666643

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.97  E-value=1.4e-05  Score=72.69  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=66.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~--~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      .++|||+|||+ |.+|..++..|...|..  .+|.++|+++.......+....    +..   +++..+++++||+||++
T Consensus        20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G----~~~---~~~~~e~~~~aDvVila   91 (322)
T 2izz_A           20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG----VKL---TPHNKETVQHSDVLFLA   91 (322)
T ss_dssp             --CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT----CEE---ESCHHHHHHHCSEEEEC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC----CEE---eCChHHHhccCCEEEEE
Confidence            34579999998 99999999999988831  3899999875311222232211    222   13456788999999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~  163 (279)
                      ..    +.            .++++++.+.... |+.+|+.++|.+..
T Consensus        92 v~----~~------------~~~~vl~~l~~~l~~~~ivvs~s~gi~~  123 (322)
T 2izz_A           92 VK----PH------------IIPFILDEIGADIEDRHIVVSCAAGVTI  123 (322)
T ss_dssp             SC----GG------------GHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred             eC----HH------------HHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence            73    11            2445556666554 67788878888763

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.97  E-value=9.7e-06  Score=81.77  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhH--Hhh----hhcccC---------CCeEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TAD----ISHMDT---------GAVVRGFLGQP  101 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~--~~D----L~~~~~---------~~~v~~~~~~~  101 (279)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+.  ..+    +.....         ..+++.   ++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---EC
Confidence            4578999999 9999999999999998  9999999861   111  000    111100         012443   24


Q ss_pred             CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCc
Q 023671          102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNS  163 (279)
Q Consensus       102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~  163 (279)
                      |+ +++++||+||++..              ++..+.+++...+.++++ ++++  +||...+
T Consensus       387 d~-~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl  432 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTI  432 (715)
T ss_dssp             SS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             CH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCC
Confidence            65 78999999999862              245566778888888874 5544  5666554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.96  E-value=2.1e-05  Score=70.00  Aligned_cols=95  Identities=13%  Similarity=0.077  Sum_probs=60.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      ++||+|||+ |.+|..++..|...++..+|.++|+++...  ..+.......  ..   ++++.++++++|+||++... 
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~aDvVilavp~-   76 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERGIVD--EA---TADFKVFAALADVIILAVPI-   76 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTTSCS--EE---ESCTTTTGGGCSEEEECSCH-
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcCCcc--cc---cCCHHHhhcCCCEEEEcCCH-
Confidence            579999998 999999999998774334899999875211  1122111111  11   13455678999999998631 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHh-C-CCceEEEecC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKC-C-PNATVNLISN  159 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~-p~a~viv~TN  159 (279)
                                     ...+++++.+... . |+.+|+.++|
T Consensus        77 ---------------~~~~~v~~~l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           77 ---------------KKTIDFIKILADLDLKEDVIITDAGS  102 (290)
T ss_dssp             ---------------HHHHHHHHHHHTSCCCTTCEEECCCS
T ss_pred             ---------------HHHHHHHHHHHhcCCCCCCEEEECCC
Confidence                           1135666667665 3 5666665555

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.96  E-value=5.9e-05  Score=66.74  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC-CCCEEEEccCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~-~ADiVIitag~  119 (279)
                      |+||+|||+ |.+|..++..|...|+..+|+++|+++...  ..+.......  ..   ++++.++++ ++|+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDLGIID--EG---TTSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHCCCcc--cc---cCCHHHHhcCCCCEEEEcCCH
Confidence            369999998 999999999999888645899999875211  1111111111  11   135567888 99999998631


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCC
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  161 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPv  161 (279)
                      .                ...++++.+... .|+.+|+.++|..
T Consensus        73 ~----------------~~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 R----------------TFREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             H----------------HHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             H----------------HHHHHHHHHHhhCCCCcEEEECCCCc
Confidence            1                123444455544 3677777666543

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.95  E-value=1.9e-05  Score=72.30  Aligned_cols=115  Identities=11%  Similarity=0.018  Sum_probs=71.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHhhhhccc---CCCeEEEEeC-CCC---HHhhhCC--
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD---TGAVVRGFLG-QPQ---LENALTG--  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---g~~~DL~~~~---~~~~v~~~~~-~~d---~~eal~~--  109 (279)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....   ....+..+.. -.|   +.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999999997  99999987521   1111121100   0122333221 122   3344554  


Q ss_pred             CCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCC--ceEEEec
Q 023671          110 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPN--ATVNLIS  158 (279)
Q Consensus       110 ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~--a~viv~T  158 (279)
                      .|+||++||.....  ..+..+.+..|+.....+++.+.+...+  ..||++|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S  155 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  155 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence            59999999864211  0123456778999999999999876541  4555544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.95  E-value=3.6e-05  Score=69.14  Aligned_cols=65  Identities=20%  Similarity=0.306  Sum_probs=48.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+....    +..   +++++++++ ||+||++..
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~~~~~g----~~~---~~~~~~~~~-aDvvi~~vp   79 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAM--TPLAEAG----ATL---ADSVADVAA-ADLIHITVL   79 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTS--HHHHHTT----CEE---CSSHHHHTT-SSEEEECCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHCC----CEE---cCCHHHHHh-CCEEEEECC
Confidence            358999998 9999999999999998  999999986221  1122211    222   346778888 999999863

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.94  E-value=3.7e-05  Score=68.48  Aligned_cols=122  Identities=11%  Similarity=0.086  Sum_probs=71.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc---CCCeEEEEeC-CCC---HHhhhC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLG-QPQ---LENALT  108 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~---~~~~v~~~~~-~~d---~~eal~  108 (279)
                      ..+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....   ...++..+.. -+|   +.+.++
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence            34556899999999999999999999997  999999875  222223333210   1123333211 122   222232


Q ss_pred             -------CCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCCC
Q 023671          109 -------GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  161 (279)
Q Consensus       109 -------~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNPv  161 (279)
                             ..|+||++||......   .+.   ...+..|+.....+++.+.+.   ...+.|++++...
T Consensus        93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~  161 (303)
T 1yxm_A           93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT  161 (303)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec
Confidence                   5899999998643211   121   234666776666666654432   1245666666443

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.94  E-value=7.1e-05  Score=65.53  Aligned_cols=117  Identities=20%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|++.  ......++...  ...+..+. .-+|.   .+.       
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999998  899999976  22233333332  12333221 11221   112       


Q ss_pred             hCCCCEEEEccCCCCCCC----Cch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCCC
Q 023671          107 LTGMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g----~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      +...|++|++||.....+    .+.   ...+..|+..    .+.+.+.+.+. +.+.||++|...
T Consensus       104 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  168 (262)
T 3rkr_A          104 HGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLA  168 (262)
T ss_dssp             HSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSSC
T ss_pred             cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEechh
Confidence            236899999999732221    121   2345556544    44444445443 456666666443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.93  E-value=2.9e-05  Score=70.14  Aligned_cols=68  Identities=15%  Similarity=0.203  Sum_probs=50.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+++||+|||. |.+|..++..|...|+  +|.++|+++..  ..++....    +..   .+++.+++++||+||++..
T Consensus         7 ~~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   74 (306)
T 3l6d_A            7 SFEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVLL   74 (306)
T ss_dssp             CCSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECCS
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEeC
Confidence            34579999998 9999999999999998  99999987621  12222211    111   2467788999999999863

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.93  E-value=1.1e-05  Score=73.73  Aligned_cols=96  Identities=21%  Similarity=0.277  Sum_probs=64.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc-----C----CCeEEEEeCCCCHHhhhCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----T----GAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~-----~----~~~v~~~~~~~d~~eal~~AD  111 (279)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++   ....+....     .    ...+..   +++. +++.++|
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~D   72 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRA---THDA-AALGEQD   72 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEE---ESCH-HHHCCCS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeE---ECCH-HHcCCCC
Confidence            579999999 9999999999999997  999999843   111121110     0    011121   2455 4579999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                      +||++...                .-++++++.+...- |+..|+.++|.+.
T Consensus        73 ~Vilavk~----------------~~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           73 VVIVAVKA----------------PALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             EEEECCCH----------------HHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             EEEEeCCc----------------hhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            99998621                22456666666554 6788888899953

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.93  E-value=0.00011  Score=64.87  Aligned_cols=133  Identities=17%  Similarity=0.237  Sum_probs=77.0

Q ss_pred             cccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe
Q 023671           22 NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL   98 (279)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~   98 (279)
                      +.++.+|++....+.  .+.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++....  .++..+.
T Consensus        14 ~~~~~~~~~mm~~~~--l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~   87 (271)
T 3v2g_A           14 GTENLYFQSMMTSIS--LAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIR   87 (271)
T ss_dssp             ------CHHHHTTTC--CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             cccccchhhhccccC--CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEE
Confidence            345667777554433  4556899999999999999999999998  899998765   222233333321  2222221


Q ss_pred             -CCCC---HHhhhC-------CCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCC
Q 023671           99 -GQPQ---LENALT-------GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  160 (279)
Q Consensus        99 -~~~d---~~eal~-------~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNP  160 (279)
                       .-+|   .++.++       ..|++|++||......   .+   -...+..|+.....+.+.+.+.- ..+.||+++..
T Consensus        88 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A           88 ADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence             1122   222233       7899999999753221   12   12345667766666666665553 35667766543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.93  E-value=2.1e-05  Score=70.77  Aligned_cols=68  Identities=18%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +++||+|||+ |.+|..++..|...|+  +|.++|+++.  ....+.....  .. .   ++++.+++++||+||++..
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~~~~~g~--~~-~---~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQ--ACANLLAEGA--CG-A---AASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTTC--SE-E---ESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHH--HHHHHHHcCC--cc-c---cCCHHHHHhcCCEEEEECC
Confidence            4579999998 9999999999999998  9999998752  1122222211  11 1   1245678899999999864

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.92  E-value=9.6e-05  Score=64.02  Aligned_cols=143  Identities=15%  Similarity=0.197  Sum_probs=79.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-------  107 (279)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++  ......++...  ...+..+. .-+|.   .+.+       
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  899999976  22223333322  12233221 11221   2222       


Q ss_pred             CCCCEEEEccCCCC--CC----CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHH
Q 023671          108 TGMDLVIIPAGVPR--KP----GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  174 (279)
Q Consensus       108 ~~ADiVIitag~~~--k~----g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~  174 (279)
                      ...|++|++||...  ..    ..+.   ...+..|+..    .+.+.+.+.+.. .+.|+++|....            
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~------------  151 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAA------------  151 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC---------------
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCccc------------
Confidence            38999999998731  10    1122   2345667655    666777776654 456666664331            


Q ss_pred             hCCCCCCCeeeecchhHHHHHHHHHHHcC
Q 023671          175 AGTYDPKKLLGVTMLDVVRANTFVAEVLG  203 (279)
Q Consensus       175 ~~~~~~~kViG~t~lds~R~~~~la~~l~  203 (279)
                         ++....++.+..-...+-+.+++.++
T Consensus       152 ---~~~~~~Y~asK~a~~~~~~~la~e~~  177 (253)
T 3qiv_A          152 ---WLYSNYYGLAKVGINGLTQQLSRELG  177 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTT
T ss_pred             ---cCCCchhHHHHHHHHHHHHHHHHHHh
Confidence               12223455543223345566777763

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.92  E-value=1.6e-05  Score=70.85  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |+||+|||+ |.+|..++..|...|+  +|.++|+++.+.  ..+.+..    +..   .+++.+++++||+||++..
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~g----~~~---~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKC--APLVALG----ARQ---ASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGG--HHHHHHT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHHcCCEEEEEcC
Confidence            469999998 9999999999999897  999999976221  1122211    121   3467788899999999863

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.91  E-value=4.1e-05  Score=71.72  Aligned_cols=114  Identities=11%  Similarity=0.058  Sum_probs=70.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-----HHhhhhcc-------cCCCeEEEEeC----CCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHM-------DTGAVVRGFLG----QPQ  102 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-----~~~DL~~~-------~~~~~v~~~~~----~~d  102 (279)
                      .++++|.|+||+|++|+.++..|...|.  +|+++++++...     ....+...       .....+..+.+    ..+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            4467999999999999999999977776  999999876311     11111110       00122332211    112


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +. ++.++|+||++|+..... .+..+.+..|+.....+++.+.+ .. ..++++|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~-~~-~~~v~~S  196 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVS  196 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-TT-CEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh-cC-CcEEEEC
Confidence            22 567999999999865322 23456778899999999999988 33 3444443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.91  E-value=1.4e-05  Score=72.35  Aligned_cols=115  Identities=16%  Similarity=0.194  Sum_probs=71.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc-----CCCeEEE--EeCCCCHHhhhCCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGAVVRG--FLGQPQLENALTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~-----~~~~v~~--~~~~~d~~eal~~ADiV  113 (279)
                      +|||+|||+ |.+|..++..|...|.  +|.++|+++.    ..+....     .......  ...+++. +++.++|+|
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~----~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~v   73 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY----EAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLV   73 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH----HHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH----HHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEE
Confidence            369999999 9999999999999987  9999998752    1111110     0011111  0112354 557899999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      |++.-    +..            +.++++.++.+- |+..|+.+.|-++....+     .+.  +|..+|++-
T Consensus        74 ilavk----~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l-----~~~--~~~~~v~~~  124 (312)
T 3hn2_A           74 LVGLK----TFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEAL-----ATL--FGAERIIGG  124 (312)
T ss_dssp             EECCC----GGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHHH-----HHH--TCGGGEEEE
T ss_pred             EEecC----CCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHHH-----HHH--CCCCcEEEE
Confidence            99862    211            224455566554 678888889998765432     222  566677664

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.89  E-value=3.7e-05  Score=76.74  Aligned_cols=116  Identities=18%  Similarity=0.054  Sum_probs=73.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCC---CHHhhhC--CCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQP---QLENALT--GMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~---d~~eal~--~AD  111 (279)
                      ++++|.|+||+|++|++++..|+..|.  +|+++|++..  .....++.... ...+..+. .-.   ++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence            457999999999999999999999997  9999998651  11112221110 01111111 111   2344566  899


Q ss_pred             EEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       112 iVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +||++|+.....  .....+.+..|+.....+++.+++.....+|.+.|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS  135 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  135 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            999999864211  01224567889999999999998876544444433

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.89  E-value=9.1e-06  Score=72.47  Aligned_cols=104  Identities=14%  Similarity=0.161  Sum_probs=67.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhC--CCCEEEEcc
Q 023671           43 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVIIPA  117 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~--~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~--~ADiVIita  117 (279)
                      ||.|+||+|++|++++..|+..  +.  +|+++|++.....     .   ...+.. .....++.++++  ++|+||++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~---~~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----G---IKFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----T---CCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----C---ceEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999988887  66  8999987652110     0   001111 000112345566  899999999


Q ss_pred             CCCCCCC-CchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          118 GVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       118 g~~~k~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                      +...... ....+.+..|+.....+++.+.+.....+|.+
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~  110 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIP  110 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEe
Confidence            8642111 12345678899999999999987654444443

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.89  E-value=1.1e-05  Score=70.34  Aligned_cols=101  Identities=21%  Similarity=0.249  Sum_probs=67.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCC--CCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTG--MDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~--ADiVIitag  118 (279)
                      |||.|+||+|++|++++..|+. ++  +|+++|+++...     .    .  +.. .....++.+++++  .|+||++||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~----~--~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----G----G--YKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----T----C--EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----C----C--ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            4899999999999999999984 65  899999875210     0    0  111 0001123445665  999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEe
Confidence            65311  012345677899999999999987543  455544

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.88  E-value=3.4e-05  Score=67.79  Aligned_cols=94  Identities=14%  Similarity=0.193  Sum_probs=62.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~e-v~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      +|||+|||+ |.+|..++..|...|+  + +.++|+++..  ...+....   .+..   .++++++++++|+||++...
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~--~~~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEES--ARELAQKV---EAEY---TTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHH--HHHHHHHT---TCEE---ESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHH--HHHHHHHc---CCce---eCCHHHHhcCCCEEEEecCH
Confidence            468999998 9999999999988886  5 8999987521  11122110   1222   13566778999999998621


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPv  161 (279)
                                      ...+++++.+.+.. |+.+++..|+-.
T Consensus        79 ----------------~~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 ----------------SAFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             ----------------HHHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             ----------------HHHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                            11356666776655 677777776643

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.87  E-value=4.8e-05  Score=65.56  Aligned_cols=114  Identities=14%  Similarity=0.136  Sum_probs=66.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-------
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-------  108 (279)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+. .-+|   +.++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999997  9999998752  22222221110 12233221 1122   223333       


Q ss_pred             CCCEEEEccCCCCCCC------Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKPG------MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~g------~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.|+||++||......      .+   -...+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS  142 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIAS  142 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            7999999998753211      11   1234455654    3455566665544 355666553

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.87  E-value=2.5e-05  Score=67.85  Aligned_cols=116  Identities=15%  Similarity=0.097  Sum_probs=73.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~----  108 (279)
                      ++++|.|+||+|++|.+++..|+. .|.  +|+++|++.  ......++....  .++..+. .-+|   +.+.++    
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999 887  999999875  222223333221  1122211 1122   222233    


Q ss_pred             ---CCCEEEEccCCCCCCCC------chhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          109 ---GMDLVIIPAGVPRKPGM------TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       109 ---~ADiVIitag~~~k~g~------~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                         +.|+||++||.......      .-...+..|+.....+++.+.+.. +.+.|+++|.
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence               79999999987533211      123456778888888888887653 3456666654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.87  E-value=2.8e-05  Score=70.85  Aligned_cols=97  Identities=20%  Similarity=0.219  Sum_probs=62.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC-------CCeEEEEeCCCCHHhhhCCCCE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-------GAVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~-------~~~v~~~~~~~d~~eal~~ADi  112 (279)
                      .++||+|||+ |.+|+.++..|...|+  +|.++|+++.+  +..+.....       ...+..   +++..+ ++++|+
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~--~~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~aDv   83 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEI--VDLINVSHTSPYVEESKITVRA---TNDLEE-IKKEDI   83 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTTEE
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHhCCcccCCCCeeeEEE---eCCHHH-hcCCCE
Confidence            4579999999 9999999999999998  99999987521  111221110       001232   235556 899999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      ||++..    +            ..++++++.+..  ++.++|.++|.++.
T Consensus        84 Vil~vk----~------------~~~~~v~~~l~~--~~~~vv~~~nGi~~  116 (335)
T 1z82_A           84 LVIAIP----V------------QYIREHLLRLPV--KPSMVLNLSKGIEI  116 (335)
T ss_dssp             EEECSC----G------------GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred             EEEECC----H------------HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence            999862    1            113344444443  67788888887553

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.86  E-value=7.6e-05  Score=66.39  Aligned_cols=93  Identities=18%  Similarity=0.265  Sum_probs=62.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      +|||+|||++|.+|..++..|...|+  +|+++|+++..  ...+....    +..   + +..++++++|+||++... 
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~g----~~~---~-~~~~~~~~aDvVi~av~~-   77 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGMG----IPL---T-DGDGWIDEADVVVLALPD-   77 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHTT----CCC---C-CSSGGGGTCSEEEECSCH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcC----CCc---C-CHHHHhcCCCEEEEcCCc-
Confidence            46999999889999999999999997  99999987521  11122111    111   1 335778999999998621 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPv  161 (279)
                                     ..++++++.+.... |+.+++..|+..
T Consensus        78 ---------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           78 ---------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             ---------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             ---------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence                           11456667776654 566666555543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.86  E-value=1.5e-05  Score=71.32  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c---hhHHh---hhhcccCCCeEEEE--eCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTA---DISHMDTGAVVRGF--LGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~---~g~~~---DL~~~~~~~~v~~~--~~~~d~~eal~~A  110 (279)
                      +++||.|+||+|++|++++..|+..|+  +|++++++. .   .....   ++...  ...+...  ....++.++++++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~--~v~~v~~D~~d~~~l~~a~~~~   78 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSM--GVTIIEGEMEEHEKMVSVLKQV   78 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHT--TCEEEECCTTCHHHHHHHHTTC
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcC--CcEEEEecCCCHHHHHHHHcCC
Confidence            467899999999999999999999987  899999874 1   11111   12111  1111111  1112356788999


Q ss_pred             CEEEEccCCC
Q 023671          111 DLVIIPAGVP  120 (279)
Q Consensus       111 DiVIitag~~  120 (279)
                      |+||++++..
T Consensus        79 d~vi~~a~~~   88 (321)
T 3c1o_A           79 DIVISALPFP   88 (321)
T ss_dssp             SEEEECCCGG
T ss_pred             CEEEECCCcc
Confidence            9999998743

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.86  E-value=2.6e-05  Score=68.22  Aligned_cols=114  Identities=18%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++..     .+..+. .-+|   ..+.++     
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   79 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEH   79 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999876  2222222211     111111 1112   222333     


Q ss_pred             --CCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          109 --GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       109 --~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                        +.|++|++||......   .+.   ...+..|+.    +.+...+.+.+..+.+.|+++|..
T Consensus        80 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  143 (259)
T 4e6p_A           80 AGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQ  143 (259)
T ss_dssp             SSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence              8999999999753211   111   234455654    455555666555556777777643

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.85  E-value=4.7e-05  Score=65.74  Aligned_cols=115  Identities=17%  Similarity=0.203  Sum_probs=68.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.++|.|+||+|++|.+++..|+..|.  +|+++|+++.  .....++....  ..+..+. .-+|   +.++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999997  9999998762  22223333221  2222221 1122   223333     


Q ss_pred             --CCCEEEEccCCCCCC--CCc---hhhHHHhhHHHHHHHHH----HHHHhCCCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~--g~~---r~d~~~~N~~i~~~i~~----~I~~~~p~a~viv~TN  159 (279)
                        +.|+||++||.....  ..+   ....+..|+.....+.+    .+++.. .+.|+++|.
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  146 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS  146 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence              899999999865321  122   13345566655444444    444433 456666654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.85  E-value=2e-05  Score=71.62  Aligned_cols=92  Identities=21%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-hhHHh---hhhcccCCCeEEEE--eCCCCHHhhhC--CCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTA---DISHMDTGAVVRGF--LGQPQLENALT--GMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~-~g~~~---DL~~~~~~~~v~~~--~~~~d~~eal~--~AD  111 (279)
                      ++||.|+||+|++|++++..|+..|+  +|++++++. . .....   ++...  ...+...  ....++.++++  ++|
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~--~v~~~~~Dl~d~~~l~~~~~~~~~d   85 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDK--GAIIVYGLINEQEAMEKILKEHEID   85 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHT--TCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhC--CcEEEEeecCCHHHHHHHHhhCCCC
Confidence            46899999999999999999999986  899999875 1 11211   22211  1111110  01123456778  999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                      +||++++..             |+...+.+++.+++..
T Consensus        86 ~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           86 IVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             EEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             EEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            999998742             5556678888888876

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.85  E-value=8.1e-05  Score=58.06  Aligned_cols=72  Identities=22%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCH---H-hhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~---~-eal~~ADiVIi  115 (279)
                      +.|||+|+|+ |.+|..++..|...+.  +|+++|.++..  ...+.... ...+. .....+.   . ..++++|+||+
T Consensus         3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~-~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            3 HGMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcEEE-EcCCCCHHHHHHcCcccCCEEEE
Confidence            3479999998 9999999999998887  99999987521  11222110 11111 1111121   1 22689999999


Q ss_pred             ccC
Q 023671          116 PAG  118 (279)
Q Consensus       116 tag  118 (279)
                      +.+
T Consensus        76 ~~~   78 (140)
T 1lss_A           76 VTG   78 (140)
T ss_dssp             CCS
T ss_pred             eeC
Confidence            964

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.84  E-value=2.9e-05  Score=67.98  Aligned_cols=100  Identities=14%  Similarity=0.097  Sum_probs=61.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE--eCCCCHHhhhCCCCEEEEccC
Q 023671           43 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF--LGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~--~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~--~~~~d~~eal~~ADiVIitag  118 (279)
                      ||.|+||+|++|++++..|+..  |+  +|+++++++....  ++....  ..+...  ....++.++++++|+||++++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~--~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQG--ITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTT--CEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCC--CeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5889999999999999999887  76  8999998752211  111111  111110  011235567899999999987


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ...          ..|+...+.+++.+.+.....+|.+.|
T Consensus        75 ~~~----------~~~~~~~~~l~~a~~~~~~~~~v~~Ss  104 (286)
T 2zcu_A           75 SEV----------GQRAPQHRNVINAAKAAGVKFIAYTSL  104 (286)
T ss_dssp             -----------------CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCc----------hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            531          136677888888888776444444443

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.84  E-value=0.00011  Score=65.12  Aligned_cols=134  Identities=16%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             CCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEE
Q 023671           19 YPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGF   97 (279)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~   97 (279)
                      ||-.+++.+|++..-.+  ..+.+++.|+||+|.+|..++..|+..|.  +|++.|.++ ......++...  ...+..+
T Consensus        11 ~~~~~~~~~~~~m~~~~--~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~--~~~~~~~   84 (273)
T 3uf0_A           11 VDLGTENLYFQSMTGPF--SLAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADG--GGSAEAV   84 (273)
T ss_dssp             --------------CTT--CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTT--TCEEEEE
T ss_pred             ccccccccchhhccccc--CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhc--CCcEEEE
Confidence            56677777887743322  24567899999999999999999999998  999999654 23333334332  2233332


Q ss_pred             e-CCCCHH---h------hhCCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEe
Q 023671           98 L-GQPQLE---N------ALTGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus        98 ~-~~~d~~---e------al~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~  157 (279)
                      . ..+|.+   +      .+...|++|++||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++
T Consensus        85 ~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~i  163 (273)
T 3uf0_A           85 VADLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTI  163 (273)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEE
T ss_pred             EecCCCHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEE
Confidence            1 112321   1      1237899999999754221   121   234555654    4455555555544 4566666


Q ss_pred             cC
Q 023671          158 SN  159 (279)
Q Consensus       158 TN  159 (279)
                      |.
T Consensus       164 sS  165 (273)
T 3uf0_A          164 AS  165 (273)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.84  E-value=1.7e-05  Score=69.26  Aligned_cols=97  Identities=12%  Similarity=0.180  Sum_probs=61.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|||+ |.+|..++..|...++  ..+|.++|+++.  ...++....   .+..   .++..++++++|+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~--~~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTA--NLKNASEKY---GLTT---TTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHH--HHHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHH--HHHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-
Confidence            469999998 9999999999998885  358999998752  112222110   1222   245678899999999987 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                       +  +.            .++++++.+.... |+.+++..++.+.
T Consensus        72 -~--~~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 -K--PD------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             -C--TT------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             -C--HH------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence             1  11            1445556666654 5666655555554

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.84  E-value=6.3e-05  Score=65.54  Aligned_cols=114  Identities=18%  Similarity=0.249  Sum_probs=70.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-------C
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------G  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-------~  109 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++......++...  ..++..+. .-+|   +.++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARH--GVKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTT--SCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhc--CCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999998  99999987642222333321  12233221 1122   223333       8


Q ss_pred             CCEEEEccCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .|++|++||......   .+   -...+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  138 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIAS  138 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence            999999999753211   11   1234566665    6677777776644 456666654

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.83  E-value=1.6e-05  Score=69.35  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH----HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV----TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~----~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|+++....    ..|+.+..   .++..  ..+..+.+...|++|++|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~d~~d~~---~v~~~--~~~~~~~~g~iD~li~~A   95 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNADHSFTIKDSGEE---EIKSV--IEKINSKSIKVDTFVCAA   95 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSSEEEECSCSSHH---HHHHH--HHHHHTTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccccceEEEeCCHH---HHHHH--HHHHHHHcCCCCEEEECC
Confidence            4789999999999999999999998  8999999762111    11111100   00000  000111233569999999


Q ss_pred             CCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          118 GVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       118 g~~~k~----g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      |.....    ..+   -...+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        96 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (251)
T 3orf_A           96 GGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGA  145 (251)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEec
Confidence            964321    111   12345678777777777666543 3456777664

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.83  E-value=7.4e-05  Score=64.73  Aligned_cols=115  Identities=16%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .++|.|+||+|.+|.+++..|+.+|.  +|+++|+++.  .....++....  .++..+. .-+|   +.+++       
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  9999998752  22223333221  2233221 1122   22223       


Q ss_pred             CCCCEEEEccCCCC-C-C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPR-K-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~-k-~--g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      .+.|+||++||... . +  ..+.   ...+..|+.....+++.+.+.   ...+.++++|.
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            37899999998653 1 1  1121   234556665554444444332   23456666654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.83  E-value=0.00035  Score=56.31  Aligned_cols=77  Identities=13%  Similarity=0.113  Sum_probs=47.6

Q ss_pred             cCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHhh-hCCC
Q 023671           35 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGM  110 (279)
Q Consensus        35 ~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~ea-l~~A  110 (279)
                      |+...+.++|.|+|+ |.+|..++..|...|.  +|+++|.++...  ..+.... ...+. .....+   +.++ +.++
T Consensus        13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~~-g~~~~-~~d~~~~~~l~~~~~~~a   85 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSEF-SGFTV-VGDAAEFETLKECGMEKA   85 (155)
T ss_dssp             ----CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTTC-CSEEE-ESCTTSHHHHHTTTGGGC
T ss_pred             hhcccCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhcC-CCcEE-EecCCCHHHHHHcCcccC
Confidence            444556679999998 9999999999999887  999999876211  1122010 11111 111112   2223 6789


Q ss_pred             CEEEEccC
Q 023671          111 DLVIIPAG  118 (279)
Q Consensus       111 DiVIitag  118 (279)
                      |+||++.+
T Consensus        86 d~Vi~~~~   93 (155)
T 2g1u_A           86 DMVFAFTN   93 (155)
T ss_dssp             SEEEECSS
T ss_pred             CEEEEEeC
Confidence            99999875

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.82  E-value=6.6e-05  Score=67.81  Aligned_cols=98  Identities=24%  Similarity=0.290  Sum_probs=62.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CCchhHHhhhhcccC----C---CeEEEEeCCCCHHhhhCCCCE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDT----G---AVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~--~~~~g~~~DL~~~~~----~---~~v~~~~~~~d~~eal~~ADi  112 (279)
                      |||+|||+ |.+|+.++..|...|+  +|.++|+  ++..  ...+.....    .   ..+.... ..++.++++++|+
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~D~   74 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEI--LKSISAGREHPRLGVKLNGVEIFW-PEQLEKCLENAEV   74 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHH--HHHHHTTCCBTTTTBCCCSEEEEC-GGGHHHHHTTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHHH--HHHHHHhCcCcccCccccceEEec-HHhHHHHHhcCCE
Confidence            58999999 9999999999998887  9999998  5411  111221110    0   1123211 1156677899999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ||++....                .+.++++.+....|+.+++..+|.+
T Consensus        75 vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           75 VLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             EEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             EEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            99987321                1234444554433577787778876

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.82  E-value=2.2e-05  Score=69.77  Aligned_cols=97  Identities=15%  Similarity=0.021  Sum_probs=62.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADiV  113 (279)
                      ++||.|+||+|++|++++..|+..|+  +|++++++..   ......+.... ...++.+.    ...++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            46899999999999999999999987  8999998742   11211111110 01122211    112356788999999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                      |++++.... +        .|+...+.+++.+++.+
T Consensus        81 i~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           81 ISALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             EECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             EECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            999875421 1        14444567777777765

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.82  E-value=6.2e-05  Score=67.04  Aligned_cols=65  Identities=18%  Similarity=0.230  Sum_probs=48.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++..  ...+....    +..   .+++.++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            69999998 9999999999998887  89999987521  11222211    222   2466778899999999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.82  E-value=9.4e-05  Score=64.90  Aligned_cols=87  Identities=13%  Similarity=0.048  Sum_probs=56.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d~~eal~~ADiVIitag  118 (279)
                      ++|||.|+|| |++|++++..|+..|+  +|+.+++++...  ..+...    .++.+. .-+|+ + +.++|+||++|+
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~----~~~~~~~D~~d~-~-~~~~d~vi~~a~   72 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQM--EAIRAS----GAEPLLWPGEEP-S-LDGVTHLLISTA   72 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGH--HHHHHT----TEEEEESSSSCC-C-CTTCCEEEECCC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhh--hhHhhC----CCeEEEeccccc-c-cCCCCEEEECCC
Confidence            3579999998 9999999999999998  999999875221  112211    122221 12343 3 889999999997


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC  148 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~  148 (279)
                      .....           .+..+.+++.+++.
T Consensus        73 ~~~~~-----------~~~~~~l~~a~~~~   91 (286)
T 3ius_A           73 PDSGG-----------DPVLAALGDQIAAR   91 (286)
T ss_dssp             CBTTB-----------CHHHHHHHHHHHHT
T ss_pred             ccccc-----------cHHHHHHHHHHHhh
Confidence            54221           12245666777663

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.81  E-value=7.3e-05  Score=64.93  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=65.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhccc-----CCCeEEEEe-CCCC---HHhhhC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD-----TGAVVRGFL-GQPQ---LENALT  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~-----~~~~v~~~~-~~~d---~~eal~  108 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....     ...++..+. .-+|   +.+.++
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            446899999999999999999999997  9999998752  11122222110     001222221 1122   222333


Q ss_pred             C-------C-CEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCceEEEecC
Q 023671          109 G-------M-DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~-------A-DiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~----I~~~~p~a~viv~TN  159 (279)
                      +       . |+||++||......   .+   ....+..|+.....+.+.    +.+....+.||++|.
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  152 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS  152 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence            3       3 99999998753211   11   223455665544444444    443332456666654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.81  E-value=8e-05  Score=69.08  Aligned_cols=93  Identities=13%  Similarity=0.232  Sum_probs=62.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC---CEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM---DLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A---DiVIit  116 (279)
                      ++|||+|||. |.+|..++..|+..|+  +|.++|+++.  ...++....    +.   ..+++.++++++   |+||++
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~---~~~s~~e~~~~a~~~DvVi~~   88 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IA---GARSIEEFCAKLVKPRVVWLM   88 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CB---CCSSHHHHHHHSCSSCEEEEC
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CE---EeCCHHHHHhcCCCCCEEEEe
Confidence            3579999998 9999999999999998  9999998752  222233221    11   134677888888   999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  160 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNP  160 (279)
                      ...+                .++++++.+.... |+.+||..||-
T Consensus        89 vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           89 VPAA----------------VVDSMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             SCGG----------------GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred             CCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            6311                1344555666554 56677666543

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.81  E-value=7e-05  Score=74.38  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=73.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC----HHhhhCCCCEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d----~~eal~~ADiV  113 (279)
                      ++++|.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+.+ -.|    +.++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            4579999999999999999999887 76  999999875211  11111   122332211 111    33467799999


Q ss_pred             EEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       114 Iitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++|+.....  ..+..+.+..|+.....+++.+.+..  ..++++|.
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            9999865321  11234567788889999999998765  45555543

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.81  E-value=3.9e-05  Score=68.03  Aligned_cols=76  Identities=22%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c---h-hHHh---hhhcccCCCeEEEE--eCCCCHHhhhCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---P-GVTA---DISHMDTGAVVRGF--LGQPQLENALTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~---~-g~~~---DL~~~~~~~~v~~~--~~~~d~~eal~~A  110 (279)
                      ++||.|+||+|++|++++..|+..|+  +|++++++. .   . ....   ++...  ...+...  ....++.++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~--~v~~v~~D~~d~~~l~~~~~~~   77 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSL--GVILLEGDINDHETLVKAIKQV   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHT--TCEEEECCTTCHHHHHHHHTTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhC--CCEEEEeCCCCHHHHHHHHhCC
Confidence            56899999999999999999998886  899999875 1   0 1111   22211  1111111  1112356778999


Q ss_pred             CEEEEccCCC
Q 023671          111 DLVIIPAGVP  120 (279)
Q Consensus       111 DiVIitag~~  120 (279)
                      |+||++++..
T Consensus        78 d~vi~~a~~~   87 (307)
T 2gas_A           78 DIVICAAGRL   87 (307)
T ss_dssp             SEEEECSSSS
T ss_pred             CEEEECCccc
Confidence            9999999754

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.81  E-value=0.00015  Score=62.66  Aligned_cols=105  Identities=16%  Similarity=0.208  Sum_probs=66.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHhhhhcccCCCeEEEEeCCCCHHhhh----CCCCEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLENAL----TGMDLVI  114 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g---~~~DL~~~~~~~~v~~~~~~~d~~eal----~~ADiVI  114 (279)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++...   ...|+.+..            +..+++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~~------------~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRKQ------------AIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCHH------------HHHHHHHHhCCCCCEEE
Confidence            4799999999999999999999998  999999876211   223333321            122333    4559999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCCC
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  161 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNPv  161 (279)
                      ++||.....+ .-.+.+..|+.....+.+.+.+.   ...+.||++|...
T Consensus        68 ~~Ag~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           68 LCAGLGPQTK-VLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             ECCCCCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             ECCCCCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            9999764122 23455666765554444444322   2335666666443

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.80  E-value=0.00012  Score=67.28  Aligned_cols=104  Identities=16%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC--C---CCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q---PQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~--~---~d~~eal~~ADiVIi  115 (279)
                      ++||.|+||+|++|++++..|+..|+  +|++++++.......++...   ..+..+.+  -   .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999998887  89999987632222223221   12222211  1   125567899999998


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCC
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  160 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNP  160 (279)
                      +++...   .      ..|... +.+++.+++.. .. .+|.+|-.
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCc
Confidence            875331   1      235544 78888888776 44 44555533

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.80  E-value=0.00019  Score=63.20  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||+|||+ |.+|..++..|...++  +|+++|+++...  ..+.......  ..   .+++.++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g~~~--~~---~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQLVD--EA---GQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCCCCc--cc---cCCHHHh-CCCCEEEEECCH--
Confidence            58999998 9999999999999887  999999875211  1122111111  11   1355666 999999998631  


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          122 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                                    ..+.++++.+.... |+.+|+.++|
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          13456666676654 5677766544

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.80  E-value=8e-05  Score=67.44  Aligned_cols=70  Identities=11%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +++||+|||+ |.+|..++..|...|+ .+|.++|+++.......+....    +..   .+++.+++++||+||++..
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEecC
Confidence            3579999998 9999999999998885 5899999962011111222211    222   2466788999999999874

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.79  E-value=2.5e-05  Score=59.24  Aligned_cols=72  Identities=28%  Similarity=0.396  Sum_probs=48.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe--CCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~--~~~d~~eal~~ADiVIit  116 (279)
                      +++||.|+|+ |.+|..++..|...| .  +|+++|+++....  .+.+.  ........  ...++.+.++++|+||.+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~--~~~~~--~~~~~~~d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAALA--VLNRM--GVATKQVDAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHHH--HHHTT--TCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHHH--HHHhC--CCcEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            4569999999 999999999999988 5  8999998752111  11111  11111111  112345678899999999


Q ss_pred             cC
Q 023671          117 AG  118 (279)
Q Consensus       117 ag  118 (279)
                      ++
T Consensus        77 ~~   78 (118)
T 3ic5_A           77 AP   78 (118)
T ss_dssp             SC
T ss_pred             CC
Confidence            84

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.79  E-value=9.6e-05  Score=64.98  Aligned_cols=117  Identities=13%  Similarity=0.174  Sum_probs=69.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT----  108 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~----  108 (279)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++..  ......+...  ..++..+. .-+|   +.+.++    
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~  107 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQQEK  107 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  9999998762  1111222211  11222221 1112   222232    


Q ss_pred             ---CCCEEEEccCCCCC-C----CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCC
Q 023671          109 ---GMDLVIIPAGVPRK-P----GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       109 ---~ADiVIitag~~~k-~----g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                         ..|+||++||.... .    ..+.   ...+..|+..    .+.+.+.+.+... +.|+++|..
T Consensus       108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~isS~  173 (279)
T 3ctm_A          108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGK-GSLIITSSI  173 (279)
T ss_dssp             HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCC
T ss_pred             HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEECch
Confidence               48999999986532 1    1111   2345556555    6777777776543 455555543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.79  E-value=3.2e-05  Score=69.22  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=58.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH-HhhhhcccCCCeEEEE--eCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTGAVVRGF--LGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~-~~DL~~~~~~~~v~~~--~~~~d~~eal~~ADiVIita  117 (279)
                      +||.|+||+|++|++++..|+..|+  +|++++++.. ... ..++...  ...+...  ....++.++++++|+||+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~--~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a   87 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSL--GAIIVKGELDEHEKLVELMKKVDVVISAL   87 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHT--TCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcC--CCEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999999987  8999998752 211 1122221  1111111  11123567889999999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                      +...             +...+.+++.+++..
T Consensus        88 ~~~~-------------~~~~~~l~~aa~~~g  106 (318)
T 2r6j_A           88 AFPQ-------------ILDQFKILEAIKVAG  106 (318)
T ss_dssp             CGGG-------------STTHHHHHHHHHHHC
T ss_pred             chhh-------------hHHHHHHHHHHHhcC
Confidence            7431             122355666666665

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.79  E-value=0.00016  Score=69.66  Aligned_cols=103  Identities=7%  Similarity=0.095  Sum_probs=67.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC---CCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~---ADiVIit  116 (279)
                      .++||+|||+ |.+|.+++..|+..|+  +|.++|+++.  .+.++........+..   ++++++++++   +|+||++
T Consensus        14 ~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~--~~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~   85 (480)
T 2zyd_A           14 SKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSRE--KTEEVIAENPGKKLVP---YYTVKEFVESLETPRRILLM   85 (480)
T ss_dssp             -CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHH--HHHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHH--HHHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEEE
Confidence            3568999999 9999999999999998  9999998752  1122222100112332   3467777776   9999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  165 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t  165 (279)
                      ...+    .           .++++++.+.... |+.+||..+|.....+
T Consensus        86 Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t  120 (480)
T 2zyd_A           86 VKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDT  120 (480)
T ss_dssp             SCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHH
T ss_pred             CCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHH
Confidence            7321    1           1344555666554 5778888888764433

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.79  E-value=0.00016  Score=62.90  Aligned_cols=78  Identities=14%  Similarity=0.133  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCC---CCcEEEEEeCCCch-hHHhhhhcccCCCeEEEEeC----CCCHHhhhC---
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINP---LVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLG----QPQLENALT---  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~---~~~ev~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~----~~d~~eal~---  108 (279)
                      ++++|.|+||+|.+|..++..|+..|   .  +|+++|++... ....++....  .++..+..    ..++.+.++   
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHHH
Confidence            34589999999999999999999988   6  99999997621 1222332211  12222211    112333333   


Q ss_pred             ------CCCEEEEccCCCC
Q 023671          109 ------GMDLVIIPAGVPR  121 (279)
Q Consensus       109 ------~ADiVIitag~~~  121 (279)
                            ..|++|++||...
T Consensus        96 ~~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCC
T ss_pred             HhcCCCCccEEEECCCcCC
Confidence                  7999999999764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.78  E-value=0.0001  Score=67.17  Aligned_cols=75  Identities=15%  Similarity=0.190  Sum_probs=48.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhh----hhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD----ISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~D----L~~~~~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++.  ......    +..............++++.++++++|+||
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi   80 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL   80 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEE
Confidence            479999998 9999999999999887  8999998752  111111    000000000000001246677789999999


Q ss_pred             EccC
Q 023671          115 IPAG  118 (279)
Q Consensus       115 itag  118 (279)
                      ++..
T Consensus        81 ~~v~   84 (359)
T 1bg6_A           81 IVVP   84 (359)
T ss_dssp             ECSC
T ss_pred             EeCC
Confidence            9973

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.78  E-value=5.4e-05  Score=60.44  Aligned_cols=93  Identities=13%  Similarity=0.156  Sum_probs=62.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+||+|||+ |.+|..++..|...|.  +|.++|+++.  +..+.++.     ..+..   .++++++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            459999998 9999999998888775  6999999762  22222222     12222   3467788999999999876


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      .+. +-...                  ....|..+++.+++|.++
T Consensus        90 ~~~-~~~~~------------------~~l~~g~~vid~~~p~~~  115 (144)
T 3oj0_A           90 SKT-PIVEE------------------RSLMPGKLFIDLGNPPNI  115 (144)
T ss_dssp             CSS-CSBCG------------------GGCCTTCEEEECCSSCSB
T ss_pred             CCC-cEeeH------------------HHcCCCCEEEEccCCccC
Confidence            541 11110                  112357888889999865

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.78  E-value=5.6e-05  Score=67.13  Aligned_cols=66  Identities=15%  Similarity=0.260  Sum_probs=46.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++|||+|||+ |.+|..++..|...|+  +|.++| ++....  .+....    +.   ..+++.++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~---~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AV---NVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CB---CCSSHHHHHHTCSEEEECCS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Cc---ccCCHHHHHhcCCEEEEECC
Confidence            3579999998 9999999999998887  999999 662111  112111    11   12456778899999999863

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.77  E-value=5.8e-05  Score=66.53  Aligned_cols=113  Identities=16%  Similarity=0.099  Sum_probs=68.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~~  109 (279)
                      +++|.|+||+|++|.+++..|+..|.  +|++.|++.....  ++.... ...+..+. .-+|   ..+++       .+
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALD--DLVAAY-PDRAEAISLDVTDGERIDVVAADVLARYGR   79 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGH--HHHHHC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhc-cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            45899999999999999999999998  9999998762111  111110 11222211 1122   22222       27


Q ss_pred             CCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .|++|++||.....   ..+.   ...+..|+..    .+.+.+.+++... +.|+++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~~sS  138 (281)
T 3m1a_A           80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGS-GSVVNISS  138 (281)
T ss_dssp             CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEcC
Confidence            89999999864211   1222   2345667666    7777777776553 45666554

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.77  E-value=0.00012  Score=65.24  Aligned_cols=66  Identities=14%  Similarity=0.347  Sum_probs=48.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|||+ |.+|..++..|...++  +|.++|+++..  ...+.+..    +..   .+++.++++++|+||++..
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEAN--VAAVVAQG----AQA---CENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHTTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            469999998 9999999999998887  99999987521  12222211    222   2466778899999999863

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.76  E-value=5.5e-05  Score=59.26  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHhh-hCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~ea-l~~ADiVIit  116 (279)
                      +++|.|+|+ |.+|..++..|...|.  +|+++|.++..  ...+....  ..+. ....++   +.++ +.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~~--~~~~~~~~--~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYA--THAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHTTTTTC--SEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhC--CEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            458999998 9999999999999887  89999987521  11122111  1111 111122   2222 6789999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ++.+          ...|..    ++..+++.+|+.++...+||.
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~  108 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYY  108 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHH
Confidence            7532          122332    344455566764444455554

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.76  E-value=2.8e-05  Score=64.94  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh---CCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL---TGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal---~~ADiVIita  117 (279)
                      +|||.|+||+|++|+.++..|+ +|.  +|+++|+++. ....|+.+..            ++.+.+   ...|+||++|
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~~~------------~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITNID------------SIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTCHH------------HHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCCHH------------HHHHHHHHhCCCCEEEECC
Confidence            3589999999999999999998 887  9999998652 1112222211            122333   3589999999


Q ss_pred             CCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhCC-CceEEEecC
Q 023671          118 GVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCP-NATVNLISN  159 (279)
Q Consensus       118 g~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TN  159 (279)
                      |......   .+.   .+.+..|+.....+++.+.+.-. .+.++++|.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            8653221   121   23456777777777777766521 256666553

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.76  E-value=4.2e-05  Score=73.50  Aligned_cols=114  Identities=10%  Similarity=0.041  Sum_probs=69.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-----HHhhhhcc-------cCCCeEEEEeCC----CCH
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHM-------DTGAVVRGFLGQ----PQL  103 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-----~~~DL~~~-------~~~~~v~~~~~~----~d~  103 (279)
                      .+++|.|+||+|++|++++..|...+.  +|++++++....     ....+...       ....+++.+.+.    .++
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            457999999999999999999976666  999999876311     10111110       011234433210    122


Q ss_pred             HhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       104 ~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      . +..++|+||++|+... ...+..++...|+...+.+++.+.+ ....++.+.|
T Consensus       227 ~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS  278 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVST  278 (508)
T ss_dssp             C-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEE
T ss_pred             C-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCC
Confidence            2 5679999999998653 1223455677899999999999987 3333444433

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.75  E-value=7.1e-05  Score=67.63  Aligned_cols=116  Identities=12%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc-----CC-CeEEEEeCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TG-AVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~-----~~-~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      +|||+|||+ |.+|+.++..|. .|.  +|.++++++...  ..+....     .. ......  +.+ .++..++|+||
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~--~~l~~~G~~~~~~~~~~~~~~--~~~-~~~~~~~D~vi   72 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQA--AAIQSEGIRLYKGGEEFRADC--SAD-TSINSDFDLLV   72 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHH--HHHHHHCEEEEETTEEEEECC--EEE-SSCCSCCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHH--HHHHhCCceEecCCCeecccc--ccc-ccccCCCCEEE
Confidence            479999999 999999999998 886  999999875211  1111100     00 011111  111 24568999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cch
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML  189 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~l  189 (279)
                      ++.    |+..            +.++++.++...++. |+.+.|-++...     .+.+  -+|.++|++- +..
T Consensus        73 lav----K~~~------------~~~~l~~l~~~~~~~-ivs~~nGi~~~e-----~l~~--~~~~~~vl~g~~~~  124 (307)
T 3ego_A           73 VTV----KQHQ------------LQSVFSSLERIGKTN-ILFLQNGMGHIH-----DLKD--WHVGHSIYVGIVEH  124 (307)
T ss_dssp             ECC----CGGG------------HHHHHHHTTSSCCCE-EEECCSSSHHHH-----HHHT--CCCSCEEEEEEECC
T ss_pred             EEe----CHHH------------HHHHHHHhhcCCCCe-EEEecCCccHHH-----HHHH--hCCCCcEEEEEEee
Confidence            986    2211            345556666555666 777889886532     2332  3677888765 443

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.75  E-value=0.00013  Score=62.61  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHhhhC---CCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENALT---GMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~eal~---~ADi  112 (279)
                      .+.++|.|+||+|++|.+++..|+..|.  +|+++|+++....  ++........+... .-+|   +.+.++   ..|+
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~id~   79 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLV--SLAKECPGIEPVCV-DLGDWDATEKALGGIGPVDL   79 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTTCEEEEC-CTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhccCCCcEEe-cCCCHHHHHHHHHHcCCCCE
Confidence            3456899999999999999999999998  9999998752111  11110001111111 1122   233343   4799


Q ss_pred             EEEccCCCCCCC---Cc---hhhHHHhhHHHHH----HHHHHHHHhCCCceEEEecC
Q 023671          113 VIIPAGVPRKPG---MT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       113 VIitag~~~k~g---~~---r~d~~~~N~~i~~----~i~~~I~~~~p~a~viv~TN  159 (279)
                      ||++||......   .+   ....+..|+....    .+.+.+.+....+.||++|.
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           80 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            999998653211   11   1234556665544    44444444443456666654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.74  E-value=7.8e-05  Score=65.92  Aligned_cols=92  Identities=11%  Similarity=-0.001  Sum_probs=57.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      ||||+|||+ |.+|..++..|.. |+  +|.++|+++...  ..+....    +...   + +.++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~--~~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKA--LRHQEEF----GSEA---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHH--HHHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh
Confidence            368999998 9999999999988 87  899999876211  1111111    1111   1 356788999999987322


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPv  161 (279)
                                     ..++++++.+.+.. |+.+++..+|..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           11233445554433 566666666644

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.73  E-value=0.00012  Score=66.51  Aligned_cols=111  Identities=19%  Similarity=0.238  Sum_probs=71.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc-----cCC----CeEEEEeCCCCHHhhhCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTG----AVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~-----~~~----~~v~~~~~~~d~~eal~~AD  111 (279)
                      ++||+|||+ |.+|..++..|...|+  +|.++ .++..  ...+...     ...    ..+..   +++. +++.++|
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~--~~~i~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~D   88 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQH--VQAIEATGLRLETQSFDEQVKVSA---SSDP-SAVQGAD   88 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHH--HHHHHHHCEEEECSSCEEEECCEE---ESCG-GGGTTCS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhH--HHHHHhCCeEEEcCCCcEEEeeee---eCCH-HHcCCCC
Confidence            469999999 9999999999999998  99999 65411  1111110     000    11222   2354 4579999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      +||++....                -++++++.+..+. |+.+|+.++|.++....+     .+.  +| +++++
T Consensus        89 ~vilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l-----~~~--~~-~~vl~  139 (318)
T 3hwr_A           89 LVLFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENADTL-----RSL--LE-QEVAA  139 (318)
T ss_dssp             EEEECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHH-----HHH--CC-SEEEE
T ss_pred             EEEEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHH-----HHH--cC-CcEEE
Confidence            999986211                1356667777654 678888889999875422     222  45 66775

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.72  E-value=3.9e-05  Score=69.77  Aligned_cols=67  Identities=16%  Similarity=0.118  Sum_probs=48.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc-----hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~-----~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      ++||+|||+ |.+|..++..|+..| +  +|.++|+++.     ......+....  .   .   ++++.+++++||+||
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g--~---~---~~s~~e~~~~aDvVi   92 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG--V---E---PLDDVAGIACADVVL   92 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT--C---E---EESSGGGGGGCSEEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC--C---C---CCCHHHHHhcCCEEE
Confidence            469999998 999999999999999 7  9999998751     12222222221  1   1   103467899999999


Q ss_pred             EccC
Q 023671          115 IPAG  118 (279)
Q Consensus       115 itag  118 (279)
                      ++..
T Consensus        93 ~avp   96 (317)
T 4ezb_A           93 SLVV   96 (317)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            9874

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.72  E-value=0.00017  Score=64.59  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  .++..+. .-+|   ..+.+      
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999998  999999986  222333343321  2222221 1122   22222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                       ...|++|++||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.|+++|..
T Consensus       106 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  169 (301)
T 3tjr_A          106 LGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASF  169 (301)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCch
Confidence             37899999999753211   111   234555544    455555556666556777777643

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.71  E-value=0.0004  Score=60.67  Aligned_cols=116  Identities=16%  Similarity=0.112  Sum_probs=70.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++........+..+. .-+|.   .+++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  9999998752  11222332211011233221 11222   2222       


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHH----HHHHHHHHHHHhC--CCceEEEecCC
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAG----IVRTLCEGIAKCC--PNATVNLISNP  160 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~----i~~~i~~~I~~~~--p~a~viv~TNP  160 (279)
                      ...|++|++||....  ..-...+..|+.    ..+.+.+.+.+..  +.+.|+++|..
T Consensus        85 g~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           85 GRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             SCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence            357999999987532  223445566655    6677777776543  24667776643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.71  E-value=0.00022  Score=58.95  Aligned_cols=137  Identities=13%  Similarity=0.045  Sum_probs=77.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHhh--hCCCCEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA--LTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~ea--l~~ADiV  113 (279)
                      ..++|.|+|+ |.+|..++..|... |+  +|+++|.++..  ...+....  ..+.. ...++   +.++  +.++|+|
T Consensus        38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~--~~~~~~~g--~~~~~-gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           38 GHAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEA--AQQHRSEG--RNVIS-GDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TTCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHH--HHHHHHTT--CCEEE-CCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHH--HHHHHHCC--CCEEE-cCCCCHHHHHhccCCCCCCEE
Confidence            3568999998 99999999999888 87  89999997621  11122211  11111 11122   3343  6889999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHH
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  193 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R  193 (279)
                      |++.+..           ..|.    .++..+++.+|+..++..+|-.+..     +.+.+. |.  +.++.-...-+.+
T Consensus       110 i~~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~~-----~~l~~~-G~--~~vi~p~~~~a~~  166 (183)
T 3c85_A          110 LLAMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPDQL-----EGLLES-GV--DAAFNIYSEAGSG  166 (183)
T ss_dssp             EECCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHHHH-----HHHHHH-TC--SEEEEHHHHHHHH
T ss_pred             EEeCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHc-CC--CEEEchHHHHHHH
Confidence            9986421           2232    3444566667887776665532221     233333 33  4565543332344


Q ss_pred             HHHHHHHHcCCCCC
Q 023671          194 ANTFVAEVLGLDPR  207 (279)
Q Consensus       194 ~~~~la~~l~v~~~  207 (279)
                      +...+.+.++.+..
T Consensus       167 l~~~~~~~~~~~~~  180 (183)
T 3c85_A          167 FARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHHCCCCC
T ss_pred             HHHHHHHhcCCccc
Confidence            55555566665443

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.71  E-value=4.9e-05  Score=65.38  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=66.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH------HhhhhcccCCCeEEEEeCCCCHHhhh--CCCCE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTGAVVRGFLGQPQLENAL--TGMDL  112 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~------~~DL~~~~~~~~v~~~~~~~d~~eal--~~ADi  112 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++....      ..|+.+...   +...  .....+.+  .+.|+
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~~~~~---~~~~--~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNKNWTEQ---EQSI--LEQTASSLQGSQVDG   75 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTSCHHHH---HHHH--HHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCccccccccEEEeCCCCCHHH---HHHH--HHHHHHHhCCCCCCE
Confidence            35799999999999999999999997  9999998762110      011111100   0000  00011112  47999


Q ss_pred             EEEccCCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          113 VIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       113 VIitag~~~k~----g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      +|++||.....    ..+   -...+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  130 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA  130 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECc
Confidence            99999964321    111   12356677777666666666543 2456776664

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.71  E-value=0.00033  Score=60.69  Aligned_cols=116  Identities=19%  Similarity=0.202  Sum_probs=68.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC----HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~e-v~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d----~~eal------  107 (279)
                      +.++|.|+||+|.+|..++..|+.+|.  + |+++|+++......++........+..+.. -+|    ..+.+      
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            346899999999999999999999996  5 899998763222223332211123332211 112    11222      


Q ss_pred             -CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHH----HhC--CCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA----KCC--PNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~----~~~--p~a~viv~TN  159 (279)
                       .+.|++|++||....  ..-...+..|+.....+.+.+.    +..  +.+.|+++|.
T Consensus        82 ~g~id~lv~~Ag~~~~--~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  138 (254)
T 1sby_A           82 LKTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             cCCCCEEEECCccCCH--HHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence             378999999997422  2234556667655555444443    322  2466777664

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.70  E-value=9.3e-05  Score=63.54  Aligned_cols=115  Identities=18%  Similarity=0.268  Sum_probs=67.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.++|.|+||+|++|.+++..|+..|.  +|+++|++..  .....++.... ...+..+. .-.|   +.++++     
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999997  9999998752  22222222100 11222221 1112   223333     


Q ss_pred             --CCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCceEEEec
Q 023671          109 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       109 --~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~T  158 (279)
                        +.|+||++||......   .+   ..+.+..|+...    +.+.+.+.+.. .+.||++|
T Consensus        83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~s  143 (248)
T 2pnf_A           83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNIS  143 (248)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence              8999999998753211   11   224556676655    44555555443 35566655

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.70  E-value=0.00026  Score=60.59  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCc--hhHHhhhhcccCCCeEEEEeCCCCH---Hhh-------hC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTGAVVRGFLGQPQL---ENA-------LT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~---~ea-------l~  108 (279)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++ ++++.  .....++..............-+|.   +++       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4899999999999999999999997  88887 66542  2222223221111111011111221   122       34


Q ss_pred             CCCEEEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.|+||++||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  139 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITS  139 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence            799999999875321   111   22345566655    666666666554 355666654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.70  E-value=0.00029  Score=61.88  Aligned_cols=118  Identities=19%  Similarity=0.258  Sum_probs=69.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-----  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-----  107 (279)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  .++..+. .-+|   +.+++     
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999997  899999876  222222333221  1233221 1122   12222     


Q ss_pred             --CCCCEEEEccCCCCCCCC---c---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCCC
Q 023671          108 --TGMDLVIIPAGVPRKPGM---T---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g~---~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                        .+.|+||++||.......   +   ....+..|+..    .+.+.+.+.+. ..+.||++|...
T Consensus       105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~  169 (272)
T 1yb1_A          105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAA  169 (272)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechh
Confidence              378999999997532211   1   12345566555    44455555443 345666666544

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.70  E-value=4.3e-05  Score=68.49  Aligned_cols=110  Identities=14%  Similarity=0.144  Sum_probs=70.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh-CCCCEEEEccCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal-~~ADiVIitag~  119 (279)
                      +|||+|||+ |.+|..++..|...|.  +|.++|+++. +  .++.............   +..+++ .++|+||++.  
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~-~--~~~~~~~g~~~~~~~~---~~~~~~~~~~D~vilav--   70 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAK-T--ITYYTVPHAPAQDIVV---KGYEDVTNTFDVIIIAV--   70 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCE-E--EEEESSTTSCCEEEEE---EEGGGCCSCEEEEEECS--
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccC-c--EEEEecCCeeccceec---CchHhcCCCCCEEEEeC--
Confidence            469999999 9999999999998886  8999998751 1  1111111111112111   223555 8999999986  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                        |+..            +.++++.++.+- |+..|+.+.|-++...           .+|.++|++-
T Consensus        71 --k~~~------------~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-----------~~~~~~v~~g  113 (294)
T 3g17_A           71 --KTHQ------------LDAVIPHLTYLAHEDTLIILAQNGYGQLE-----------HIPFKNVCQA  113 (294)
T ss_dssp             --CGGG------------HHHHGGGHHHHEEEEEEEEECCSSCCCGG-----------GCCCSCEEEC
T ss_pred             --CccC------------HHHHHHHHHHhhCCCCEEEEeccCcccHh-----------hCCCCcEEEE
Confidence              2211            334445555543 6778888899998754           1677888764

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.70  E-value=0.00018  Score=61.74  Aligned_cols=116  Identities=18%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D-~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-----  107 (279)
                      +.++|.|+||+|.+|.+++..|+.+|.  +|+++| +++.  .....++...  ..++..+. .-+|   +.+++     
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999997  899984 4432  2222233221  12233221 1122   22222     


Q ss_pred             --CCCCEEEEccCCCCCC------CCchhhHHHhhHHHHH----HHHHHHHHhCCCceEEEecCC
Q 023671          108 --TGMDLVIIPAGVPRKP------GMTRDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 --~~ADiVIitag~~~k~------g~~r~d~~~~N~~i~~----~i~~~I~~~~p~a~viv~TNP  160 (279)
                        .+.|+||++||.....      .......+..|+....    .+.+.+.+.. .+.|+++|..
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~  143 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK-SGKIINITSI  143 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC-
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCh
Confidence              2799999999875321      1122345666766544    4444444333 4566666654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.70  E-value=0.00068  Score=60.05  Aligned_cols=135  Identities=13%  Similarity=0.175  Sum_probs=69.3

Q ss_pred             CCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEE
Q 023671           19 YPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVR   95 (279)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~   95 (279)
                      ||-.+.|.+|++..-    ..+.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++....  ..+.
T Consensus        11 ~~~~~~n~~~~~mm~----~~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~   82 (280)
T 4da9_A           11 VDLGTENLYFQSMMT----QKARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG--ARVI   82 (280)
T ss_dssp             ------------CCS----CCCCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT--CCEE
T ss_pred             ccccccchhhhhhhh----ccCCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CcEE
Confidence            344556666665422    23345789999999999999999999998  999999744   222223333321  2233


Q ss_pred             EEe-CCC---CHHhhhC-------CCCEEEEccCCCC---CC--CCch---hhHHHhhHH----HHHHHHHHHHHhCC--
Q 023671           96 GFL-GQP---QLENALT-------GMDLVIIPAGVPR---KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCP--  150 (279)
Q Consensus        96 ~~~-~~~---d~~eal~-------~ADiVIitag~~~---k~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p--  150 (279)
                      .+. .-+   +..+.++       ..|++|++||...   .+  ..+.   ...+..|+.    +.+.+.+.+.+...  
T Consensus        83 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~  162 (280)
T 4da9_A           83 FLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARA  162 (280)
T ss_dssp             EEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             EEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence            221 111   2222333       7899999999731   11  1121   223444544    45666666665542  


Q ss_pred             CceEEEecCCC
Q 023671          151 NATVNLISNPV  161 (279)
Q Consensus       151 ~a~viv~TNPv  161 (279)
                      .+.||++|...
T Consensus       163 ~g~Iv~isS~~  173 (280)
T 4da9_A          163 SRSIINITSVS  173 (280)
T ss_dssp             CEEEEEECCC-
T ss_pred             CCEEEEEcchh
Confidence            45677766443

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.70  E-value=0.00081  Score=58.83  Aligned_cols=117  Identities=21%  Similarity=0.304  Sum_probs=69.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|+++  ......++.... ..++..+. .-+|.   ++.+      
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999976  233334444322 12333321 11221   2222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                       ...|++|++||.....   ..+..   ..+..|+.    +.+...+.+.+.. .+.||++|..
T Consensus        86 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  148 (262)
T 3pk0_A           86 FGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSI  148 (262)
T ss_dssp             HSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCS
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEech
Confidence             3899999999975321   12222   23555654    4455555555444 3556665543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.70  E-value=0.00036  Score=61.03  Aligned_cols=116  Identities=20%  Similarity=0.186  Sum_probs=68.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.......++..+. .-+|   +.+.+       
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  999999876  222222332210012232221 1122   22222       


Q ss_pred             CCCCEEEEccCCCCCCC----Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|++||.....+    .+.   ...+..|+    .+.+.+.+.+.+.. .+.||++|.
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  152 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  152 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence            26899999999753311    121   23445555    44556677776654 355666654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.69  E-value=0.00017  Score=61.87  Aligned_cols=116  Identities=20%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh---
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL---  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal---  107 (279)
                      ++|.|+||+|.+|..++..|+..|...     +|++.|+++.  .....++...  ..++..+.. -+|   +.+++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            579999999999999999999887532     7999998752  2222233221  123333211 122   12222   


Q ss_pred             ----CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCceEEEecCC
Q 023671          108 ----TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 ----~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~----i~~~I~~~~p~a~viv~TNP  160 (279)
                          .+.|+||++||......   .+   ....+..|+.....    +.+.+.+. ..+.|+++|..
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~  146 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSV  146 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecc
Confidence                27999999999753211   11   22345556554444    44444443 34566666643

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.69  E-value=0.00017  Score=63.12  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=67.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++|++..  .....++...   ..+..+. .-+|   +.++++     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  9999998752  1222222211   1233221 1122   222232     


Q ss_pred             --CCCEEEEccCCCCCC-----CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKP-----GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~-----g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                        +.|+||++||.....     ..+   ..+.+..|+.....+++.+.+.   ...+.|+++|.
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence              799999999865321     111   2335566765555555544443   23456666654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.69  E-value=0.00021  Score=62.75  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=64.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc-CCCeEEEEe-CCCC---HHhhhC-----
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~-~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.... ...++..+. .-+|   +.++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999998  999999875  222222331100 012233221 1122   223333     


Q ss_pred             --CCCEEEEccCCCCCC---CC----ch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCCC
Q 023671          109 --GMDLVIIPAGVPRKP---GM----TR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       109 --~ADiVIitag~~~k~---g~----~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                        +.|++|++||.....   ..    +.   ...+..|+..    .+...+.+.+..  +.||++|...
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~  150 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIA  150 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEeccc
Confidence              899999999864321   11    21   2335556544    444445554433  5666666443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.69  E-value=0.00026  Score=62.51  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  .++..+. .-+|   +.+++      
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  999999876  222223333211  1222221 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-----CCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-----CPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~-----~p~a~viv~TN  159 (279)
                       .+.|++|.+||......   .+   -...+..|+.....+++.+.+.     ...+.||++|.
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS  160 (277)
T 2rhc_B           97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS  160 (277)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECc
Confidence             37899999999753211   11   1234566766655555554332     12356666654

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.69  E-value=0.00032  Score=61.00  Aligned_cols=113  Identities=6%  Similarity=-0.011  Sum_probs=66.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcccCCCeEEEEeCCCCHHhhh-------CCCCEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENAL-------TGMDLV  113 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~~~d~~eal-------~~ADiV  113 (279)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++.. ....++....  .++..+ ...+..+.+       ...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4789999999999999999999998  99999987621 1122232211  111111 122333333       378999


Q ss_pred             EEccCCC-CCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          114 IIPAGVP-RKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       114 Iitag~~-~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      |++||.. ...   ..+.   ...+..|+.    +.+...+.+.+.. .+.||++|.-
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  133 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSA  133 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCS
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCc
Confidence            9999975 221   1121   234555654    4455555555543 4566666643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.69  E-value=0.00049  Score=60.03  Aligned_cols=118  Identities=9%  Similarity=0.026  Sum_probs=71.4

Q ss_pred             CCcEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-----
Q 023671           40 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~--VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-----  107 (279)
                      +.+++.|+||+|+  +|..++..|+..|.  +|++.|+++ ......++.......++..+. .-+|   .++.+     
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            3468999999988  99999999999998  899999876 222223333221111222211 1112   22222     


Q ss_pred             --CCCCEEEEccCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          108 --TGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       108 --~~ADiVIitag~~~k-----~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                        ...|++|++||....     +  ..+.   ...+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence              368999999987541     1  1121   2345667776667777766654 3567777664

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.69  E-value=0.00032  Score=61.20  Aligned_cols=116  Identities=10%  Similarity=0.093  Sum_probs=69.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|   ..+.+      
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999986  222233343321  2233221 1122   22222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||.....   ..+.   ...+..|+.    +.+...+.+.+....+.|+++|.
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence             3789999999965321   1121   224555654    44455555545555667777654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.68  E-value=0.00024  Score=68.49  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc-CCCeEEEEeCCCCHHhhhC---CCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALT---GMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~-~~~~v~~~~~~~d~~eal~---~ADiVIi  115 (279)
                      +++||+|||. |.+|.+++..|...|+  +|.++|+++..  +.++.... ....+..   +++++++++   ++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            4579999998 9999999999999998  99999998621  12222211 1112322   235566554   6999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPv  161 (279)
                      +...+               +.++++++.+...- |+.+||..+|-.
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            86322               12444556666554 667777776644

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.68  E-value=0.00019  Score=62.39  Aligned_cols=114  Identities=19%  Similarity=0.296  Sum_probs=68.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-------
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-------  108 (279)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  .++..+. .-+|   +.++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999997  9999998762  22223333211  1222221 1122   222333       


Q ss_pred             CCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.|++|++||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.||++|.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            7999999998753211   121   224555544    45566666665543466776654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00039  Score=61.98  Aligned_cols=178  Identities=17%  Similarity=0.139  Sum_probs=92.6

Q ss_pred             HhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC--chhHHhhhhcccCC
Q 023671           15 SAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN--TPGVTADISHMDTG   91 (279)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~--~~g~~~DL~~~~~~   91 (279)
                      |..|-|-..+|+.-|+....+.    .+++.|+||+|.+|..++..|+..|. ...|++.|++.  ......++......
T Consensus        11 ~~~~~~~~~~m~~~~~~~~~l~----~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~   86 (287)
T 3rku_A           11 SSFLVPRGSHMSQGRKAAERLA----KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPN   86 (287)
T ss_dssp             ---------CCTTCHHHHHHHT----TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTT
T ss_pred             cceeeecCcccccCccchhhcC----CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCC
Confidence            4457788888988887665554    45899999999999999999988763 23899999876  22223333322111


Q ss_pred             CeEEEEe-C---CCCHHhhh-------CCCCEEEEccCCCCCC----CCch---hhHHHhhHH----HHHHHHHHHHHhC
Q 023671           92 AVVRGFL-G---QPQLENAL-------TGMDLVIIPAGVPRKP----GMTR---DDLFNINAG----IVRTLCEGIAKCC  149 (279)
Q Consensus        92 ~~v~~~~-~---~~d~~eal-------~~ADiVIitag~~~k~----g~~r---~d~~~~N~~----i~~~i~~~I~~~~  149 (279)
                      .++..+. .   .++.++.+       ...|++|.+||.....    ..+.   ...+..|+.    +.+.+.+.+.+..
T Consensus        87 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~  166 (287)
T 3rku_A           87 AKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN  166 (287)
T ss_dssp             CEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2233221 1   11222222       3689999999965321    1122   234555654    4555555555544


Q ss_pred             CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcc
Q 023671          150 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDV  211 (279)
Q Consensus       150 p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~  211 (279)
                       .+.||++|.....            .+.|..-.++.+..--..|-+.++..++  +..|++
T Consensus       167 -~g~IV~isS~~~~------------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrv  213 (287)
T 3rku_A          167 -SGDIVNLGSIAGR------------DAYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRV  213 (287)
T ss_dssp             -CCEEEEECCGGGT------------SCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEE
T ss_pred             -CCeEEEECChhhc------------CCCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence             4566666543211            1233333344432222335566777763  444543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.68  E-value=0.00042  Score=61.49  Aligned_cols=132  Identities=14%  Similarity=0.176  Sum_probs=69.1

Q ss_pred             chhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCC
Q 023671           25 NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQP  101 (279)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~  101 (279)
                      +-+|+..........+.+++.|+||+|.+|..++..|++.|.  +|++.|+++  ......++..... ..+..+. .-+
T Consensus        17 ~l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~   93 (281)
T 4dry_A           17 NLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVG   93 (281)
T ss_dssp             -----------------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTT
T ss_pred             eEEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCC
Confidence            334544333333334556899999999999999999999998  999999986  2222233322111 1112111 112


Q ss_pred             CH---Hhh-------hCCCCEEEEccCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhC-CCceEEEecC
Q 023671          102 QL---ENA-------LTGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       102 d~---~ea-------l~~ADiVIitag~~~k~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      |.   .+.       +...|++|++||.....+    .+.   ...+..|+.    +.+.+.+.+.+.. +.+.||++|.
T Consensus        94 d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  173 (281)
T 4dry_A           94 DPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS  173 (281)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence            21   122       236799999999753221    122   224555644    4666666666654 2567777664

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.67  E-value=0.00017  Score=62.61  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~-~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|+ ++  ......++...  ...+..+. .-+|   +.+.++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  8999998 44  12222233221  12233221 1122   222233     


Q ss_pred             --CCCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                        +.|+||++||.....   ..+.   .+.+..|+..    .+.+.+.+.+..+.+.|+++|.
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              789999999875321   1121   2345556544    4445555554443566666654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.67  E-value=9.9e-05  Score=66.48  Aligned_cols=66  Identities=11%  Similarity=0.092  Sum_probs=48.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+....    +..   ..++.++++++|+||++..
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g----~~~---~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKC--DLFIQEG----ARL---GRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGG--HHHHHTT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHHcC----CEE---cCCHHHHHhcCCEEEEeCC
Confidence            469999998 9999999999998887  899999876221  1122211    121   2356788899999999863

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.66  E-value=7.8e-05  Score=65.33  Aligned_cols=112  Identities=17%  Similarity=0.269  Sum_probs=68.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.++|.|+||+|.+|..++..|+.+|.  +|++.|+++.  .....++..     .+..+. .-+|   +.++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  9999998762  111222221     122111 1112   223333     


Q ss_pred             --CCCEEEEccCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TN  159 (279)
                        +.|++|++||.....   ..+.   ...+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence              899999999975321   1221   23455665544    66666666554 456666654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.66  E-value=0.0005  Score=60.84  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=70.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  .++..+. .-+|   .++.++     
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  999999976  222333343321  1122111 1122   222233     


Q ss_pred             --CCCEEEEccCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                        ..|++|++||......   .+.   ...+..|+    .+.+...+.+.+....+.|++++.
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS  169 (276)
T 3r1i_A          107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTAS  169 (276)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence              7999999999754221   122   22344554    455566666666554566776654

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.66  E-value=0.00016  Score=62.58  Aligned_cols=114  Identities=17%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~-~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+ ++  ......++....  .++..+. .-+|   +.+.+      
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  9999998 44  222222332211  1222221 1122   22222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       .+.|++|++||......   .+.   ...+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIAS  141 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence             37999999999753211   121   2345566554    566666666554 356666653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.65  E-value=0.00018  Score=63.97  Aligned_cols=116  Identities=16%  Similarity=0.239  Sum_probs=69.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      +.+.+.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|.   .++       
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK  102 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  999999876  222333443321  2232221 11221   122       


Q ss_pred             hCCCCEEEEccCCCCC--C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          107 LTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       107 l~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +...|++|++||....  +  ..+.   ...+..|+.    +.+...+.+++.. .+.|+++|.-
T Consensus       103 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~  166 (283)
T 3v8b_A          103 FGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSSI  166 (283)
T ss_dssp             HSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             hCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcCh
Confidence            2379999999997432  1  2222   234555654    4455555556543 4566666543

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.65  E-value=9.5e-05  Score=64.45  Aligned_cols=116  Identities=21%  Similarity=0.235  Sum_probs=70.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~-~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~----  108 (279)
                      +.++|.|+||+|++|.+++..|+.+|.  +|++.|+ ++  ......++....  .++..+. .-+|   +.++++    
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999997  8999998 43  122222333211  2222221 1122   223333    


Q ss_pred             ---CCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          109 ---GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       109 ---~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                         +.|+||++||.....   ..+   -...+..|+.....+.+.+.+.. ..+.||++|.
T Consensus        96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  156 (274)
T 1ja9_A           96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  156 (274)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence               899999999875321   111   13456677777777777666553 1256666654

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.64  E-value=0.00032  Score=60.83  Aligned_cols=113  Identities=16%  Similarity=0.123  Sum_probs=66.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.++|.|+||+|.+|..++..|+.+|.  +|+++|++..  .....++.     .++..+. .-+|   +.++++     
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999999762  22222221     1122211 1112   223333     


Q ss_pred             --CCCEEEEccCCCCCCC---------Cc---hhhHHHhhHHHHHHHHHHHHHh----C-----CCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKPG---------MT---RDDLFNINAGIVRTLCEGIAKC----C-----PNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~g---------~~---r~d~~~~N~~i~~~i~~~I~~~----~-----p~a~viv~TN  159 (279)
                        ..|++|++||......         .+   -...+..|+.....+++.+.+.    .     ..+.|+++|.
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS  157 (265)
T 2o23_A           84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTAS  157 (265)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence              8999999998753211         11   1234556665555555444433    1     3456666653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.64  E-value=3.3e-05  Score=68.52  Aligned_cols=93  Identities=17%  Similarity=0.149  Sum_probs=58.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFLG----QPQLENALTGMDL  112 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~----~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADi  112 (279)
                      ++||.|+||+|++|++++..|+..|+  +|++++++..    ......+.... ...++.+.+    ..++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHcCCCE
Confidence            56899999999999999999999986  8999988742    11111111100 011222111    1235567899999


Q ss_pred             EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                      ||++++...             +...+.+++.+++.+
T Consensus        81 vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (308)
T 1qyc_A           81 VISTVGSLQ-------------IESQVNIIKAIKEVG  104 (308)
T ss_dssp             EEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             EEECCcchh-------------hhhHHHHHHHHHhcC
Confidence            999987431             122345666776665

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.64  E-value=0.00039  Score=59.40  Aligned_cols=150  Identities=17%  Similarity=0.108  Sum_probs=79.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCC---HHhhhCCC----CE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENALTGM----DL  112 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d---~~eal~~A----Di  112 (279)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++..   ....... .-++   ..+.++..    |+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~-D~~~~~~v~~~~~~~~~~~d~   75 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLSN---NVGYRAR-DLASHQEVEQLFEQLDSIPST   75 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCSS---CCCEEEC-CTTCHHHHHHHHHSCSSCCSE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhh---ccCeEee-cCCCHHHHHHHHHHHhhcCCE
Confidence            4699999999999999999999997  8999999762  222222211   1111111 1112   22333333    99


Q ss_pred             EEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-C-CceEEEecCCCCchHHHHHHHHHHhCCCCCCCee
Q 023671          113 VIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  184 (279)
Q Consensus       113 VIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kVi  184 (279)
                      +|++||......   .+.   ...+..|+.....+.+.+.+.- . ...++++|.....            .+.+..-.+
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~~~Y  143 (230)
T 3guy_A           76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ------------QPKAQESTY  143 (230)
T ss_dssp             EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT------------SCCTTCHHH
T ss_pred             EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC------------CCCCCCchh
Confidence            999998753221   121   2345667665555555554432 1 2255555543211            123333344


Q ss_pred             eecchhHHHHHHHHHHHcCCCCCCCcc
Q 023671          185 GVTMLDVVRANTFVAEVLGLDPRDVDV  211 (279)
Q Consensus       185 G~t~lds~R~~~~la~~l~v~~~~V~~  211 (279)
                      +.+..-...+-+.++..++  +..|++
T Consensus       144 ~asKaa~~~~~~~la~e~~--~~gi~v  168 (230)
T 3guy_A          144 CAVKWAVKGLIESVRLELK--GKPMKI  168 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--TSSCEE
T ss_pred             HHHHHHHHHHHHHHHHHHH--hcCeEE
Confidence            4432222345566777764  344443

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.64  E-value=0.00036  Score=60.78  Aligned_cols=116  Identities=18%  Similarity=0.265  Sum_probs=67.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------  108 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++  ......++........+..+. .-+|   +.++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999997  999999876  222222332110011232221 1122   223333      


Q ss_pred             CCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.|++|++||......   .+   -...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGS  144 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence            5999999999653211   11   123455565444    66666665544 355666654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.64  E-value=0.00033  Score=59.80  Aligned_cols=76  Identities=20%  Similarity=0.190  Sum_probs=49.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~--~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------  108 (279)
                      +++|.|+||+|.+|.+++..|+..|  .  +|+++|++.....  ++.+. ....+..+. .-+|   +.+.++      
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~--~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKAT--ELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCH--HHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHH--HHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            4589999999999999999999998  6  9999998762211  11111 112233221 1122   223333      


Q ss_pred             ---CCCEEEEccCCCC
Q 023671          109 ---GMDLVIIPAGVPR  121 (279)
Q Consensus       109 ---~ADiVIitag~~~  121 (279)
                         +.|+||++||...
T Consensus        78 g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           78 GSDGLSLLINNAGVLL   93 (250)
T ss_dssp             GGGCCCEEEECCCCCC
T ss_pred             CCCCCcEEEECCcccC
Confidence               8999999998754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.64  E-value=0.00034  Score=67.10  Aligned_cols=98  Identities=9%  Similarity=0.083  Sum_probs=63.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC---CCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~---ADiVIita  117 (279)
                      ++||+|||+ |.+|..++..|...|+  +|.++|+++..  ..++........+..   ++++++.+++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEc
Confidence            358999998 9999999999999998  89999987521  112221100112332   3466676665   99999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPv  161 (279)
                      ..+               ..++++++.+.... |+.+||..+|-.
T Consensus        77 p~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           77 QAG---------------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             CTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            321               12344455666554 566777777765

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.64  E-value=0.00038  Score=61.34  Aligned_cols=114  Identities=19%  Similarity=0.244  Sum_probs=66.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-----  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|...   ......++....  ..+..+. .-+|.   ++.+     
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~  102 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIE  102 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999998  999998854   222223333221  2222221 11221   2222     


Q ss_pred             --CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          108 --TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                        ...|++|++||......   .+.   ...+..|+.    +.+...+.+.+.. .+.||++|
T Consensus       103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is  164 (269)
T 4dmm_A          103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIA  164 (269)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence              37899999999754321   121   224555654    4455555555544 45666665

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.63  E-value=0.00019  Score=61.98  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh---CC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL---TG  109 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal---~~  109 (279)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|++.|+++.  .....++..     .+.... ..++   ..+.+   .+
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~   84 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSN   84 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCC
Confidence            3456899999999999999999999997  9999998762  222222221     122111 1122   12222   37


Q ss_pred             CCEEEEccCCCCCC------CCchhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCCC
Q 023671          110 MDLVIIPAGVPRKP------GMTRDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       110 ADiVIitag~~~k~------g~~r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      .|++|++||.....      ..+-...+..|+.    +.+...+.+.+. ..+.|+++|...
T Consensus        85 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~  145 (249)
T 3f9i_A           85 LDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIV  145 (249)
T ss_dssp             CSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCC
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHH
Confidence            89999999864321      1122344555654    444445555443 345677666544

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.63  E-value=7.1e-05  Score=64.10  Aligned_cols=94  Identities=17%  Similarity=0.160  Sum_probs=60.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      +++||+|||+ |.+|..++..|...|+  +|.++|+++..  ..++...    .+...    ++.++++++|+||++...
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~----g~~~~----~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPKR--TARLFPS----AAQVT----FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHHH--HHHHSBT----TSEEE----EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHc----CCcee----cHHHHHhCCCEEEECCCh
Confidence            3569999997 9999999999998887  89999987521  1222221    12221    456789999999998742


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      .    . ..+++        +    +....++.+++.++|+...
T Consensus        94 ~----~-~~~v~--------~----l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           94 E----H-YSSLC--------S----LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             G----G-SGGGG--------G----GHHHHTTCEEEECCCCCHH
T ss_pred             H----H-HHHHH--------H----HHHhcCCCEEEEeCCCccc
Confidence            1    1 11111        1    2222367888888998753

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.63  E-value=0.00049  Score=60.46  Aligned_cols=118  Identities=15%  Similarity=0.161  Sum_probs=71.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL----  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal----  107 (279)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++....  .++..+. .-+|.   .+.+    
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   91 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAV   91 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999998  999988765   222223333321  2232221 11221   2222    


Q ss_pred             ---CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCC
Q 023671          108 ---TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  160 (279)
Q Consensus       108 ---~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNP  160 (279)
                         ...|++|++||......   .+.   ...+..|+.-...+.+.+.+.- +.+.||++|..
T Consensus        92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence               37899999999753221   122   2346677776666666666554 34566666543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.63  E-value=0.00023  Score=61.91  Aligned_cols=116  Identities=16%  Similarity=0.108  Sum_probs=66.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. ..+|   +.+.+      
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  999999875  222222332211  2233221 1122   12222      


Q ss_pred             --CCCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCceEEEecCC
Q 023671          108 --TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNP  160 (279)
Q Consensus       108 --~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~a~viv~TNP  160 (279)
                        .+.|+||++||.....   ..+   -...+..|+.....+.+.+    .+.. .+.|+++|..
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  152 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSI  152 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC--
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccc
Confidence              5789999999864321   112   2234566766555554444    4443 3556666543

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.63  E-value=7.2e-05  Score=64.59  Aligned_cols=111  Identities=14%  Similarity=0.089  Sum_probs=65.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhh-------h--CCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-------L--TGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~ea-------l--~~AD  111 (279)
                      .++|.|+||+|.+|..++..|+.+|.  +|++.|+++..... .. +. ...++.   ...+..+.       +  .+.|
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~-~~-~~~D~~---~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS-AS-VI-VKMTDS---FTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS-EE-EE-CCCCSC---HHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC-Cc-EE-EEcCCC---CHHHHHHHHHHHHHHhCCCCCC
Confidence            45899999999999999999999997  99999987621100 00 00 000000   00011122       2  3799


Q ss_pred             EEEEccCCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          112 LVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       112 iVIitag~~~k~----g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      ++|++||.....    ..+   -...+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            999999975321    111   12345667766666666665442 2356776654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.63  E-value=0.00047  Score=60.62  Aligned_cols=117  Identities=20%  Similarity=0.270  Sum_probs=69.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHhhhhcccCCCeEEEEe-CCCC--
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQ--  102 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--------------~~g~~~DL~~~~~~~~v~~~~-~~~d--  102 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++              ......++...  ..++..+. .-+|  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCCHH
Confidence            345899999999999999999999998  999999872              11111122221  12233221 1122  


Q ss_pred             -HHhhh-------CCCCEEEEccCCCCCCCC--chhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          103 -LENAL-------TGMDLVIIPAGVPRKPGM--TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       103 -~~eal-------~~ADiVIitag~~~k~g~--~r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                       .++.+       ...|++|++||.......  .-...+..|+.    +.+...+.+.+..+.+.|+++|.-
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS  159 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccH
Confidence             22223       378999999997532211  11234555644    555556666666556777777643

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.62  E-value=0.0002  Score=64.32  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=55.6

Q ss_pred             CcEEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           41 GFKVAILG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIG-A~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ++||+||| + |.+|..++..|...|+  +|.++|+++.                      .+..+++++||+||++...
T Consensus        21 ~~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~----------------------~~~~~~~~~aDvVilavp~   75 (298)
T 2pv7_A           21 IHKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDW----------------------AVAESILANADVVIVSVPI   75 (298)
T ss_dssp             CCCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCG----------------------GGHHHHHTTCSEEEECSCG
T ss_pred             CCEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCcc----------------------cCHHHHhcCCCEEEEeCCH
Confidence            35899999 7 9999999999999998  8999997642                      0235778999999998732


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  157 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~  157 (279)
                      .                .+.++++.+..+. |+++|+.+
T Consensus        76 ~----------------~~~~vl~~l~~~l~~~~iv~~~   98 (298)
T 2pv7_A           76 N----------------LTLETIERLKPYLTENMLLADL   98 (298)
T ss_dssp             G----------------GHHHHHHHHGGGCCTTSEEEEC
T ss_pred             H----------------HHHHHHHHHHhhcCCCcEEEEC
Confidence            1                1445556666554 56655544

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.62  E-value=0.00048  Score=59.68  Aligned_cols=114  Identities=19%  Similarity=0.235  Sum_probs=67.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++...  ..++..+. .-+|.   .+.       
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  999999875  22222333321  12233221 11221   112       


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.+.|++|++||.....   ..+.   ...+..|+.    +.+...+.+.+..  +.|+++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            23799999999975321   1222   234555654    4444555555443  66776654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.61  E-value=0.00062  Score=59.70  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=70.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe----CCCCHHhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~----~~~d~~ea-------  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.... ..++..+.    ...+.++.       
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999976  222233333211 12222221    11122222       


Q ss_pred             hCCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|++||......   .+.   ...+..|+.    +.+...+.+.+....+.|+++|.
T Consensus        96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (266)
T 4egf_A           96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVAS  158 (266)
T ss_dssp             HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            237999999999754221   121   223455544    45566666666655677777764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00033  Score=67.68  Aligned_cols=99  Identities=13%  Similarity=0.134  Sum_probs=65.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhc-ccCCCeEEEEeCCCCHHhhhCC---CCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENALTG---MDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~-~~~~~~v~~~~~~~d~~eal~~---ADiVIit  116 (279)
                      ..||+|||+ |.+|.+++..|+..|+  +|.++|+++.+  +.++.. ......+..   ++++.+++++   +|+||++
T Consensus        10 ~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~   81 (497)
T 2p4q_A           10 SADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSIIG---ATSIEDFISKLKRPRKVMLL   81 (497)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEEC---CSSHHHHHHTSCSSCEEEEC
T ss_pred             CCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeEE---eCCHHHHHhcCCCCCEEEEE
Confidence            458999999 9999999999999998  99999997621  122222 100012322   3466676766   9999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                      ...+               ..++++++.+.... |+.+||..+|-..
T Consensus        82 Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~  113 (497)
T 2p4q_A           82 VKAG---------------APVDALINQIVPLLEKGDIIIDGGNSHF  113 (497)
T ss_dssp             CCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             cCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence            6321               12445556666655 5667777776543

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.61  E-value=0.00017  Score=61.58  Aligned_cols=93  Identities=17%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hh---HHhhhhcccCCCeEEEEeCCCCHHhhhC------CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG---VTADISHMDTGAVVRGFLGQPQLENALT------GM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g---~~~DL~~~~~~~~v~~~~~~~d~~eal~------~A  110 (279)
                      .++|.|+||+|.+|..++..|+.+|.  +|+++|+++. ..   ...|+.+.            .++.++++      +.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~~~   67 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY--RVVVLDLRREGEDLIYVEGDVTRE------------EDVRRAVARAQEEAPL   67 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCCSSSSEEEECCTTCH------------HHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCccccceEEEeCCCCCH------------HHHHHHHHHHHhhCCc
Confidence            35899999999999999999999997  9999998752 00   00111111            11223333      78


Q ss_pred             CEEEEccCCCCCCC---C-------chhhHHHhhHHHHHHHHHHHHH
Q 023671          111 DLVIIPAGVPRKPG---M-------TRDDLFNINAGIVRTLCEGIAK  147 (279)
Q Consensus       111 DiVIitag~~~k~g---~-------~r~d~~~~N~~i~~~i~~~I~~  147 (279)
                      |++|++||......   .       .-.+.+..|+.....+.+.+.+
T Consensus        68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  114 (242)
T 1uay_A           68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAW  114 (242)
T ss_dssp             EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999998653221   1       2234556676655555555544

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.60  E-value=0.00016  Score=66.64  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhC----CCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALT----GMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~----~ADiVIi  115 (279)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|+++. ...+.++.     .  ..   .+++.++++    ++|+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~~G-----~--~~---~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVDEG-----F--DV---SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHTT-----C--CE---ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcC-----C--ee---eCCHHHHHHhcccCCCEEEE
Confidence            469999998 9999999999999997  9999998762 11222111     1  11   134555554    5799999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +..                ...+.++++.+....|+++|+.++
T Consensus        75 avP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AVP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eCC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            862                122445555566666777765543

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.60  E-value=0.00034  Score=61.02  Aligned_cols=112  Identities=21%  Similarity=0.277  Sum_probs=65.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------  108 (279)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++.  .....++..     .+..+. .-+|   +.++++      
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~~   84 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDAL   84 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998752  111122211     111111 1112   223333      


Q ss_pred             -CCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          109 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 -~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       +.|++|++||......   .+.   ...+..|+.    +.+...+.+.+....+.|+++|.
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence             8999999999753211   111   234555654    34444455544442456666653

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.60  E-value=0.00025  Score=68.12  Aligned_cols=100  Identities=11%  Similarity=0.109  Sum_probs=62.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEeCCCCHHhhhC---CCCEEEEc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP  116 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~---~ADiVIit  116 (279)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++.+  ....+.........+..   +++++++++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEEEe
Confidence            68999998 9999999999999998  89999987521  11111110000112332   346666665   59999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                      ...+               ..++++++.+.... |+.+||..+|-..
T Consensus        76 Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~  107 (478)
T 1pgj_A           76 VQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHF  107 (478)
T ss_dssp             CCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred             cCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence            7321               11334445555544 5677777777653

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.60  E-value=0.00019  Score=63.75  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=67.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.++|.|+||+|++|.+++..|+..|.  +|+++|++.  ......++.... ..++..+. .-+|   +.++++     
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  999999876  222222332210 11233221 1122   222222     


Q ss_pred             --CCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~----~~I~~~~p~a~viv~TN  159 (279)
                        ..|+||++||.....   ..+   ....+..|+.....+.    +.+.+....+.++++|.
T Consensus       102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence              459999999864321   111   2234556665554444    44433334566666654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.60  E-value=0.00025  Score=66.08  Aligned_cols=73  Identities=16%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEe---CCCchhHHhh-hhccc------CCCe--EE--E-E-eCCCCH
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYD---VVNTPGVTAD-ISHMD------TGAV--VR--G-F-LGQPQL  103 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D---~~~~~g~~~D-L~~~~------~~~~--v~--~-~-~~~~d~  103 (279)
                      +|||+|||+ |.+|..++..|+. .|+  +|.++|   +++  ..... +....      ....  +.  . . ..++|+
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEA--ERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHH--HHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcH--HHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            479999999 9999999999987 487  999999   432  11111 11100      0000  11  0 0 023467


Q ss_pred             HhhhCCCCEEEEccC
Q 023671          104 ENALTGMDLVIIPAG  118 (279)
Q Consensus       104 ~eal~~ADiVIitag  118 (279)
                      .++++++|+||++..
T Consensus        77 ~~a~~~aD~Vilav~   91 (404)
T 3c7a_A           77 EIAISGADVVILTVP   91 (404)
T ss_dssp             HHHHTTCSEEEECSC
T ss_pred             HHHhCCCCEEEEeCc
Confidence            778999999999873

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.60  E-value=0.00039  Score=66.83  Aligned_cols=98  Identities=17%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhc-ccCCCeEEEEeCCCCHHhhh---CCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENAL---TGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~-~~~~~~v~~~~~~~d~~eal---~~ADiVIita  117 (279)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++.+  +.++.. ......+..   ++++++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            58999998 9999999999999998  89999987621  112221 000012332   34666665   5999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                      ..+               ..++++++.+.... |+.+||..+|-..
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            321               11334445555544 5667777777654

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.60  E-value=0.00027  Score=61.80  Aligned_cols=115  Identities=15%  Similarity=0.232  Sum_probs=67.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  .++..+. .-+|.   .+.       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  899999875  222223333221  2232221 11222   111       


Q ss_pred             hCCCCEEEEccCCC-CC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVP-RK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~-~k-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|++||.. .. +  ..+.   ...+..|+.    +.+...+.+.+.. .+.||++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTAS  144 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence            23789999999875 21 1  1121   234455654    4444555554433 456666653

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.59  E-value=0.00031  Score=61.14  Aligned_cols=114  Identities=17%  Similarity=0.219  Sum_probs=66.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|   ..+.+       
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  999999876  222223333221  2222221 1122   22222       


Q ss_pred             CCCCEEEEccCCCCCCC----Cch---hhHHHhhHHHH----HHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r---~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .+.|++|++||.....+    .+.   ...+..|+...    +.+.+.+++. ..+.|+++|.
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS  151 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSS  151 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEec
Confidence            37999999998642111    111   23455565544    4455555443 3456666653

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.59  E-value=0.0006  Score=60.23  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------------------chhHHhhhhcccCCCeEEEEe-C
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------------------TPGVTADISHMDTGAVVRGFL-G   99 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~------------------~~g~~~DL~~~~~~~~v~~~~-~   99 (279)
                      .+.+++.|+||+|.+|..++..|++.|.  +|+++|+++                  .......+...  ..++..+. .
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D   84 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVD   84 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcC
Confidence            3456899999999999999999999998  999999872                  01111122211  22333321 1


Q ss_pred             CCC---HHhhh-------CCCCEEEEccCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          100 QPQ---LENAL-------TGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       100 ~~d---~~eal-------~~ADiVIitag~~~k~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      -+|   ..+.+       ...|++|++||......    .+.   ...+..|+.    +.+...+.+.+....+.||++|
T Consensus        85 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~is  164 (286)
T 3uve_A           85 VRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTS  164 (286)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence            122   12222       37899999999754322    122   224455544    5555666666655567777776


Q ss_pred             C
Q 023671          159 N  159 (279)
Q Consensus       159 N  159 (279)
                      .
T Consensus       165 S  165 (286)
T 3uve_A          165 S  165 (286)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.59  E-value=0.00034  Score=59.98  Aligned_cols=114  Identities=20%  Similarity=0.228  Sum_probs=66.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEeCCCC---HHhhhC---CCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQ---LENALT---GMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~~~d---~~eal~---~AD  111 (279)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|+++..  ....++.    ...+.. ..-+|   +.++++   ..|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~~-~D~~~~~~~~~~~~~~~~id   78 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP----GIEPVC-VDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST----TCEEEE-CCTTCHHHHHHHHTTCCCCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC----CCCEEE-EeCCCHHHHHHHHHHcCCCC
Confidence            346899999999999999999999997  99999987521  1111111    111111 11122   223333   579


Q ss_pred             EEEEccCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCceEEEecCC
Q 023671          112 LVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       112 iVIitag~~~k~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +||++||......   .+   ....+..|+...    +...+.+.+....+.|+++|..
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 3d3w_A           79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ  137 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             EEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCch
Confidence            9999998653211   11   123456666554    4444444444424666666643

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.59  E-value=0.00041  Score=60.38  Aligned_cols=114  Identities=12%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h--HHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g--~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++..  .  ...++...  ..++..+. .-+|.   .+.+      
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999997  89999987532  1  12223221  12233221 11222   2222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||......   .+.   ...+..|+.    +.+...+.+.+....+.||++|.
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  141 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS  141 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence             27899999999753211   121   234555654    45555555555444356666654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.58  E-value=0.00043  Score=60.72  Aligned_cols=117  Identities=15%  Similarity=0.087  Sum_probs=67.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHhhhhcccCCCeEEEEe-CCCC-------HHhhh--
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ-------LENAL--  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~-~~--~~g~~~DL~~~~~~~~v~~~~-~~~d-------~~eal--  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+ ++  ......++.... ...+..+. .-+|       ..+.+  
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHH
Confidence            35799999999999999999999997  9999998 54  222222332210 11222211 1112       12222  


Q ss_pred             -----CCCCEEEEccCCCCCC---CCc--------------hhhHHHhhHHHHHHHHHHHHHhC--CC------ceEEEe
Q 023671          108 -----TGMDLVIIPAGVPRKP---GMT--------------RDDLFNINAGIVRTLCEGIAKCC--PN------ATVNLI  157 (279)
Q Consensus       108 -----~~ADiVIitag~~~k~---g~~--------------r~d~~~~N~~i~~~i~~~I~~~~--p~------a~viv~  157 (279)
                           ...|++|++||.....   ..+              -...+..|+.....+++.+.+.-  ..      +.||++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                 3789999999964321   111              12356667666666666655532  22      667776


Q ss_pred             cCC
Q 023671          158 SNP  160 (279)
Q Consensus       158 TNP  160 (279)
                      |..
T Consensus       168 sS~  170 (276)
T 1mxh_A          168 CDA  170 (276)
T ss_dssp             CCG
T ss_pred             Cch
Confidence            643

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.58  E-value=0.00022  Score=61.48  Aligned_cols=75  Identities=24%  Similarity=0.258  Sum_probs=49.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-Cc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~-~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      .++|.|+||+|++|.+++..|+.+|.  +|+++|++ +.  .....++...  ..++..+. .-+|   +.+.++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  99999997 42  2222233221  12233221 1122   223333     


Q ss_pred             --CCCEEEEccCC
Q 023671          109 --GMDLVIIPAGV  119 (279)
Q Consensus       109 --~ADiVIitag~  119 (279)
                        +.|+||++||.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence              89999999986

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.58  E-value=0.00014  Score=62.67  Aligned_cols=146  Identities=16%  Similarity=0.167  Sum_probs=80.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++....  .++..+. ..+|.   ++.+      
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999999762  22223333221  2233221 11221   1222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  176 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~  176 (279)
                       ...|++|++||......   .+   -...+..|+..    .+...+.+.+. +.+.|+++|.....            .
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~------------~  146 (247)
T 3lyl_A           80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSVVGS------------A  146 (247)
T ss_dssp             TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH------------H
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhc------------c
Confidence             25799999999754321   11   12345556544    44444445444 34566666643211            1


Q ss_pred             CCCCCCeeeecchhHHHHHHHHHHHc
Q 023671          177 TYDPKKLLGVTMLDVVRANTFVAEVL  202 (279)
Q Consensus       177 ~~~~~kViG~t~lds~R~~~~la~~l  202 (279)
                      +.|..-.++.+..--..+-+.+++.+
T Consensus       147 ~~~~~~~Y~~sK~a~~~~~~~la~e~  172 (247)
T 3lyl_A          147 GNPGQTNYCAAKAGVIGFSKSLAYEV  172 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445553322233555666665

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.57  E-value=0.00041  Score=62.50  Aligned_cols=65  Identities=18%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .||++||- |.+|..+|..|+..|+  +|+.||+++.+  +.++....    .+.   .+++.++++++|+||.+..
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASK--AEPLTKLG----ATV---VENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcC----CeE---eCCHHHHHhcCCceeeecc
Confidence            58999998 9999999999999999  99999987621  12233221    121   2356788999999999863

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.57  E-value=0.00015  Score=62.21  Aligned_cols=113  Identities=20%  Similarity=0.245  Sum_probs=64.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------  108 (279)
                      ++|.|+||+|.+|..++..|+..|.  +|++. ++++  ......++...  ..++..+. .-+|   +.++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999997  88884 6654  12222223221  12232221 1122   222232      


Q ss_pred             -CCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHH----HHHHHHhCCCceEEEecC
Q 023671          109 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 -~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i----~~~I~~~~p~a~viv~TN  159 (279)
                       +.|++|++||......   .+   ....+..|+.....+    .+.+.+.. .+.|+++|.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  138 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIAS  138 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCEEEEECC
Confidence             7899999999754321   11   123456666554444    44444333 456666654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.57  E-value=0.00019  Score=64.82  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=32.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~   60 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   60 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCc
Confidence            3456789999999999999999999998  99999986

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.57  E-value=5.9e-05  Score=65.91  Aligned_cols=92  Identities=15%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |||+|||+ |.+|..++..|...| +  +|.++|+++..  ...+....   .+...   +++.+++ ++|+||++.. +
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~--~~~~~~~~---g~~~~---~~~~~~~-~~D~vi~~v~-~   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEK--RERLEKEL---GVETS---ATLPELH-SDDVLILAVK-P   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHH--HHHHHHHT---CCEEE---SSCCCCC-TTSEEEECSC-H
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHH--HHHHHHhc---CCEEe---CCHHHHh-cCCEEEEEeC-c
Confidence            58999998 999999999998888 5  99999987521  12222210   12222   2345667 9999999863 1


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                                     ..++++++.+.. . +.+|+..+|.+..
T Consensus        68 ---------------~~~~~v~~~l~~-~-~~ivv~~~~g~~~   93 (263)
T 1yqg_A           68 ---------------QDMEAACKNIRT-N-GALVLSVAAGLSV   93 (263)
T ss_dssp             ---------------HHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred             ---------------hhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence                           113344444443 2 5566665566653

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.57  E-value=0.00033  Score=61.96  Aligned_cols=114  Identities=12%  Similarity=0.065  Sum_probs=68.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|+++  ......++..     ++..+. .-+|   ..+.+       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~  100 (272)
T 4dyv_A           28 KKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD-----DALCVPTDVTDPDSVRALFTATVEKF  100 (272)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS-----CCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34788999999999999999999998  999999876  2222222221     111111 1112   22222       


Q ss_pred             CCCCEEEEccCCCCCCC----Cch---hhHHHhhHHH----HHHHHHHHHHhCC-CceEEEecCCC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCP-NATVNLISNPV  161 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r---~d~~~~N~~i----~~~i~~~I~~~~p-~a~viv~TNPv  161 (279)
                      ...|++|.+||.....+    .+.   ...+..|+..    .+...+.+.+..+ .+.||++|.-.
T Consensus       101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~  166 (272)
T 4dyv_A          101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSIS  166 (272)
T ss_dssp             SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSS
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchh
Confidence            38999999999753211    121   2345556544    6666666665542 56777776543

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.57  E-value=0.00052  Score=58.64  Aligned_cols=78  Identities=21%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      ++++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.... ..++..+. .-+|   ..+.+       
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999998  899999876  222233333111 12222211 1112   22223       


Q ss_pred             CCCCEEEEccCCCC
Q 023671          108 TGMDLVIIPAGVPR  121 (279)
Q Consensus       108 ~~ADiVIitag~~~  121 (279)
                      ...|++|++||...
T Consensus        79 g~id~li~~Ag~~~   92 (235)
T 3l77_A           79 GDVDVVVANAGLGY   92 (235)
T ss_dssp             SSCSEEEECCCCCC
T ss_pred             CCCCEEEECCcccc
Confidence            37899999999753

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.56  E-value=0.00048  Score=60.08  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=68.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  .++..+. .-+|   .++.+      
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999876  222233333321  2233221 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCCC--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||.....  ..+.   ...+..|+.    +.+...+.+.+. ..+.|+++|.
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  147 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISS  147 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence             3789999999975322  2222   224555654    444444445443 3566777664

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.56  E-value=0.00043  Score=62.59  Aligned_cols=117  Identities=18%  Similarity=0.160  Sum_probs=68.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|+++.  .....++........+..+. .-+|   +.+++       
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999998  9999999862  22223333221111333221 1122   22222       


Q ss_pred             CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHh-----CCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKC-----CPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~---r~d~~~~N~~----i~~~i~~~I~~~-----~p~a~viv~TN  159 (279)
                      ...|++|++||......   .+   -.+.+..|+.    +++.+.+.+.+.     ...+.|+++|.
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS  152 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS  152 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence            36699999999743211   11   1234555644    445555555543     13566776654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.56  E-value=0.00027  Score=55.73  Aligned_cols=70  Identities=11%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCH---Hh-hhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-ALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~---~e-al~~ADiVIit  116 (279)
                      +++|.|+|+ |.+|+.++..|...|+  +|+++|.++..  ..++.+..  ..+.. ...++.   .+ .+.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~--~~~~~-gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEG--FDAVI-ADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEEE-CCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC--CcEEE-CCCCCHHHHHhCCcccCCEEEEe
Confidence            458999999 9999999999999998  99999997621  12222211  11111 112231   11 14689999998


Q ss_pred             cC
Q 023671          117 AG  118 (279)
Q Consensus       117 ag  118 (279)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.55  E-value=0.00031  Score=61.30  Aligned_cols=115  Identities=15%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.... ..++..+. .-+|   +.+++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  9999998762  22222232210 11222221 1122   22223       


Q ss_pred             CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .+.|++|++||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  144 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS  144 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            3799999999975321   1122   233445544    4455555555443 456666654

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.55  E-value=0.00035  Score=61.10  Aligned_cols=116  Identities=13%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             CcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCC---HHhhhC------
Q 023671           41 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENALT------  108 (279)
Q Consensus        41 ~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d---~~eal~------  108 (279)
                      .+++.|+||+  |.+|..++..|+..|.  +|++.|+++ ......++........... ..-+|   ..+.++      
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~~   85 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQ-CDVAEDASIDTMFAELGKVW   85 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEE-ccCCCHHHHHHHHHHHHHHc
Confidence            3579999998  8999999999999997  999999876 2222233322110111111 11122   222222      


Q ss_pred             -CCCEEEEccCCCCC-----C--C-Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          109 -GMDLVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       109 -~ADiVIitag~~~k-----~--g-~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                       ..|++|++||....     +  . .+   -...+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence             67999999997542     1  1 22   12356778777777777776553 2356777664

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.54  E-value=0.00029  Score=62.31  Aligned_cols=115  Identities=15%  Similarity=0.175  Sum_probs=68.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++...   .++..+. .-+|   +.+++      
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAY---GDCQAIPADLSSEAGARRLAQALGEL  102 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTS---SCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CceEEEEeeCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999997  999999876  22222333221   1222221 1112   11222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCC---CceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCP---NATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p---~a~viv~TN  159 (279)
                       ...|++|.+||.....   ..+   -...+..|+..    .+.+.+.+.+...   .+.||++|.
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence             3789999999965321   112   12345556544    4666666665543   156776654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.54  E-value=0.00042  Score=60.78  Aligned_cols=112  Identities=14%  Similarity=0.144  Sum_probs=63.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-----HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-----~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..+     ...|+.+...   ++..  .....+.+.+.|++|.
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~~~~~---v~~~--~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGEAKYDHIECDVTNPDQ---VKAS--IDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCSCSSEEEECCTTCHHH---HHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccCCceEEEEecCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            45899999999999999999999998  999999875221     0112211100   0000  0001122337999999


Q ss_pred             ccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          116 PAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       116 tag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      +||.....   ..+   -...+..|+.....+.+.+.+.   ...+.||++|.
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  133 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISS  133 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            99975321   112   1234556665544444444332   23456666654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.54  E-value=0.00058  Score=60.06  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=72.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHhhhhcccCCCeEEEEe-CCCCH--
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQL--  103 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--------------~~g~~~DL~~~~~~~~v~~~~-~~~d~--  103 (279)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.              ......++...  ..++..+. .-+|.  
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence            45899999999999999999999998  999999872              11111222221  12233221 11222  


Q ss_pred             -Hhhh-------CCCCEEEEccCCCCCC-CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          104 -ENAL-------TGMDLVIIPAGVPRKP-GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       104 -~eal-------~~ADiVIitag~~~k~-g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                       .+.+       ...|++|++||..... ..+   -...+..|+.-...+.+.+.+.- ..+.|+++|.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence             1222       3799999999975322 122   23457778877777777777664 4566777664

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.54  E-value=0.0003  Score=62.26  Aligned_cols=114  Identities=17%  Similarity=0.276  Sum_probs=67.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-------  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++  ......++...  ..++..+. .-+|.   .+++       
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999887  899998765  22222333322  12233221 11221   2222       


Q ss_pred             CCCCEEEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .+.|+||.+||.....   ..+   ..+.+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus       120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS  180 (285)
T 2c07_A          120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS  180 (285)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            4789999999875321   112   22345566555    555555555444 356666654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.54  E-value=0.0011  Score=56.84  Aligned_cols=117  Identities=15%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc-CCCeEEEEeC-CCCH---Hh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLG-QPQL---EN-------  105 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~-~~~~v~~~~~-~~d~---~e-------  105 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.... ....+..... .++.   .+       
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999986  222223333221 1111211111 0121   11       


Q ss_pred             hhCCCCEEEEccCCCCCCC----Cch---hhHHHhhHHHHHHH----HHHHHHhCCCceEEEecC
Q 023671          106 ALTGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  159 (279)
Q Consensus       106 al~~ADiVIitag~~~k~g----~~r---~d~~~~N~~i~~~i----~~~I~~~~p~a~viv~TN  159 (279)
                      .+...|++|++||.....+    .+.   ...+..|+.....+    .+.+++ ...+.|+++|.
T Consensus        91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~~~iv~isS  154 (247)
T 3i1j_A           91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKR-SEDASIAFTSS  154 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-SSSEEEEEECC
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-CCCCeEEEEcc
Confidence            1237899999999742221    121   23455565544444    444443 23566666654

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.54  E-value=0.0007  Score=58.25  Aligned_cols=112  Identities=16%  Similarity=0.243  Sum_probs=66.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeE-EEEe-CCCC---HHhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVV-RGFL-GQPQ---LENA------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v-~~~~-~~~d---~~ea------  106 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     ..+ ..+. .-+|   +.++      
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAEA   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHHh
Confidence            345899999999999999999999997  9999998752  11122221     111 1111 1122   2222      


Q ss_pred             hCCCCEEEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.+.|+||++||.....   ..+   -...+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS  144 (254)
T 2wsb_A           83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGS  144 (254)
T ss_dssp             HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence            25789999999975321   111   12345566554    555555555544 455666654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.54  E-value=0.0003  Score=61.50  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=65.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-----HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~-----~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++....     ..|+.+...   ++..  .....+.+...|++|.
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~d~~~---v~~~--~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEGFLAVKCDITDTEQ---VEQA--YKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTSHHH---HHHH--HHHHHHHTCSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhccceEEEecCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            45899999999999999999999997  9999998752110     112211100   0000  0001122345799999


Q ss_pred             ccCCCCCC------CCchhhHHHhhHHHH----HHHHHHHHHhCCCceEEEecCCCC
Q 023671          116 PAGVPRKP------GMTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       116 tag~~~k~------g~~r~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      +||.....      ...-...+..|+...    +...+.+.+.. .+.||++|.-..
T Consensus        94 nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~  149 (253)
T 2nm0_A           94 NAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSVVG  149 (253)
T ss_dssp             ECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCCCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECchhh
Confidence            99875321      112234556676544    44444554443 456666665443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.54  E-value=0.00031  Score=63.51  Aligned_cols=65  Identities=22%  Similarity=0.384  Sum_probs=50.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |+||++||- |.+|+.+|..|+..|+  +|..||+++  ..+.++.....    +.   ..++.++.+++|+||.+.
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~--~~~~~l~~~Ga----~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ--SAVDGLVAAGA----SA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH--HHHHHHHHTTC----EE---CSSHHHHHTTCSEEEECC
T ss_pred             cCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCH--HHHHHHHHcCC----EE---cCCHHHHHhcCCceeecC
Confidence            569999998 9999999999999999  999999875  22333443321    11   235788899999999985

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.54  E-value=0.00054  Score=59.34  Aligned_cols=114  Identities=19%  Similarity=0.234  Sum_probs=68.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++ .... ..+....  .++..+. .-+|.   .+.       +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAE-AAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF   80 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHH-HHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHH-HHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999998  999999876 2221 1232211  2232221 11222   122       3


Q ss_pred             CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|++||......   .+.   ...+..|+..    .+.+.+.+++.. .+.||++|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (249)
T 2ew8_A           81 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  141 (249)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence            47899999999753211   121   2345556554    555556566554 456666654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.53  E-value=0.00028  Score=62.99  Aligned_cols=98  Identities=12%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhC-----C-CCcEEEEEeCCCchhHHhhhhc-ccC---C-------CeEEEEeCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MDT---G-------AVVRGFLGQPQ  102 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~-----~-~~~ev~L~D~~~~~g~~~DL~~-~~~---~-------~~v~~~~~~~d  102 (279)
                      ++|||+|||+ |.+|..++..|...     | +  +|.++|+ +  .....+.. ...   .       .++..   +++
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~   77 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCV---TDN   77 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEE---ESC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceE---ecC
Confidence            4579999998 99999999999887     7 6  9999997 3  11222222 110   0       01111   124


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  163 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~  163 (279)
                       .+++.++|+||++....    .            +.++++.+...- |+..|+.++|..+.
T Consensus        78 -~~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           78 -PAEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             -HHHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             -ccccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence             35688999999987322    1            234555665543 56777777887754

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.53  E-value=0.00044  Score=60.25  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=67.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|+++  ......++...  ..++..+. .-+|   ..+.+      
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  999999876  22222333221  12233221 1122   12222      


Q ss_pred             --CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHH----HHHHHHhCCCceEEEecC
Q 023671          108 --TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 --~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i----~~~I~~~~p~a~viv~TN  159 (279)
                        ...|++|++||.....   ..+.   ...+..|+.....+    .+.+.+. ..+.|+++|.
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  146 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS  146 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence              5799999999975321   1121   23455665544444    4444443 3456666654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.53  E-value=0.00074  Score=59.17  Aligned_cols=117  Identities=15%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---H---hhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E---NALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~---eal~~A  110 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++........+..+. ..++.   .   +.+...
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            345899999999999999999999998  999999876  222233333321122233221 11221   1   223478


Q ss_pred             CEEEEccCCCCCCC---Cchh---hHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          111 DLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       111 DiVIitag~~~k~g---~~r~---d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++|++||......   .+..   ..+..|+.-    .+.+.+.+.+. ..+.|+++|.
T Consensus        87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS  144 (267)
T 3t4x_A           87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIAS  144 (267)
T ss_dssp             SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECC
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence            99999999753221   1222   235666554    55566666543 3456666654

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.52  E-value=0.00074  Score=58.71  Aligned_cols=112  Identities=18%  Similarity=0.195  Sum_probs=67.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     ..+..+. .-+|   +.+.++     
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  9999998752  11122221     1122111 1122   222232     


Q ss_pred             --CCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          109 --GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 --~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                        +.|++|++||......   .+.   ...+..|+.    +.+.+++.+++.. .+.||++|.
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence              8999999999753211   111   234555643    4456777776654 456666654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.52  E-value=0.0018  Score=56.40  Aligned_cols=117  Identities=15%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             CCcEEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC---HHhhh-----
Q 023671           40 AGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~-VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal-----  107 (279)
                      +.+++.|+||+|+ +|..++..|++.|.  +|++.|++.  ......++.... ..++..+.. -+|   +.+.+     
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            4568999999875 99999999999998  899999986  222233343221 123333221 122   12222     


Q ss_pred             --CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 --TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                        ...|++|++||......   .+.   ...+..|+.    +.+...+.+.+....+.|+++|.
T Consensus        98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence              36799999999753321   122   234455644    44455555554445666777654

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.52  E-value=0.00037  Score=61.18  Aligned_cols=115  Identities=16%  Similarity=0.210  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--chhHHhhhhcccCCCeEEEEeC-CCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D-~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal------  107 (279)
                      +++|.|+||+|.+|..++..|+..|.  +|++.+ .++  ......++...  ..++..+.. -+|   ..+.+      
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            34799999999999999999999998  887774 433  22222233222  123333211 122   12222      


Q ss_pred             -CCCCEEEEccCCCCCCC----Cch---hhHHHhhHHH----HHHHHHHHHHh--CCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKC--CPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g----~~r---~d~~~~N~~i----~~~i~~~I~~~--~p~a~viv~TN  159 (279)
                       ...|++|++||.....+    .+.   ...+..|+..    .+...+.+.+.  ...+.||++|.
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  167 (272)
T 4e3z_A          102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS  167 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence             37899999999754322    121   2345556544    44444545442  23466766654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.51  E-value=0.00024  Score=61.81  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   41 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKP   41 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            345789999999999999999999998  999999876

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.51  E-value=0.00071  Score=59.73  Aligned_cols=115  Identities=20%  Similarity=0.148  Sum_probs=71.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCCH---Hh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQL---EN-------A  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d~---~e-------a  106 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++..   .....++....  .++..+. .-+|.   .+       .
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  9999998762   11122333221  1222221 11121   11       1


Q ss_pred             hCCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN  159 (279)
                      +...|++|++||......   .+   -...+..|+.....+++.+.+. ...+.||++|.
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            347899999999753211   12   2345677877777777777665 23456666654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.51  E-value=0.00023  Score=60.76  Aligned_cols=111  Identities=17%  Similarity=0.159  Sum_probs=65.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.      .+..+. .-+|   +.+.       +
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~   76 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEAF   76 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  9999998752  11111221      111111 1112   1122       2


Q ss_pred             CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCceEEEecCC
Q 023671          108 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      .+.|++|++||......   .+   -.+.+..|+...    +.+.+.+.+. ..+.|+++|..
T Consensus        77 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  138 (234)
T 2ehd_A           77 GELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSL  138 (234)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCT
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCc
Confidence            37899999998653211   11   123455665544    4555555543 34566666543

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.50  E-value=0.0003  Score=61.15  Aligned_cols=111  Identities=12%  Similarity=0.130  Sum_probs=66.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     .++..+. .-+|   +.+.+      
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999998752  11122221     1122211 1112   11222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||.....   ..+.   ...+..|+.    ..+.+++.+++..  +.|+++|.
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS  138 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMAS  138 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcc
Confidence             3569999999975321   1122   234555644    5566666666543  66777664

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.50  E-value=0.00082  Score=59.83  Aligned_cols=118  Identities=11%  Similarity=0.120  Sum_probs=72.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-----  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-----  107 (279)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.... ..++..+. .-+|.   ++.+     
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  9999998762  11112221111 12333221 11221   1222     


Q ss_pred             --CCCCEEEEccCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          108 --TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g----~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                        ...|++|++||.....+    .+   -...+..|+.....+.+.+.+.- ..+.||++|.
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence              37899999998653221    12   23456778777777777776653 3456666653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.50  E-value=0.00083  Score=59.36  Aligned_cols=115  Identities=12%  Similarity=0.107  Sum_probs=68.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|.   .+.+       
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  899999876  222333443321  2233221 11221   1222       


Q ss_pred             CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHH-----hCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAK-----CCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~-----~~p~a~viv~TN  159 (279)
                      ...|++|++||......   .+.   ...+..|+.-...+.+.+.+     ....+.||++|.
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS  162 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAS  162 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECC
Confidence            37899999999753221   111   23455676655555554433     123466666664

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.49  E-value=5.8e-05  Score=63.05  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhC---CCCEEEEc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP  116 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~---~ADiVIit  116 (279)
                      ++|.|+||+|++|.+++..|+.+    +|+++|+++.  .....++.......++   ....++.+.++   +.|+||++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADL---ADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCT---TSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeC---CCHHHHHHHHHhcCCCCEEEEC
Confidence            47899999999999999998876    8999998752  1111112110000000   00112334455   89999999


Q ss_pred             cCCCCCC------CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          117 AGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       117 ag~~~k~------g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ||.....      ..+....+..|+.....+.+.+.+. +.+.|+++|.
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS  121 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGA  121 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9875321      1123446777888888888777432 3456666654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.49  E-value=0.00064  Score=59.99  Aligned_cols=116  Identities=17%  Similarity=0.140  Sum_probs=66.9

Q ss_pred             CCcEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671           40 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~--VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------  106 (279)
                      +.++|.|+||+|+  +|..++..|+..|.  +|++.|+++......++......  +..+. .-+|   ..+.       
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~~~~~~~~  100 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFNP--AAVLPCDVISDQEIKDLFVELGKV  100 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGCC--SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcCC--ceEEEeecCCHHHHHHHHHHHHHH
Confidence            3468999999977  99999999999998  99999998632333333322111  11111 1122   1222       


Q ss_pred             hCCCCEEEEccCCCCCC---C-----Cch---hhHHHhhHHHHHHHHHHHHHhC--CCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---G-----MTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g-----~~r---~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TN  159 (279)
                      +...|++|++||.....   +     .+.   ...+..|+.....+.+.+.+.-  ..+.|+++|.
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS  166 (280)
T 3nrc_A          101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTY  166 (280)
T ss_dssp             CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred             cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            23579999999975321   1     111   2345566555555554444331  2456666654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.49  E-value=0.00084  Score=59.16  Aligned_cols=116  Identities=18%  Similarity=0.230  Sum_probs=69.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---------------chhHHhhhhcccCCCeEEEEe-CCCC-
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------TPGVTADISHMDTGAVVRGFL-GQPQ-  102 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---------------~~g~~~DL~~~~~~~~v~~~~-~~~d-  102 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++.               ......++...  ..++..+. .-+| 
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDVRDD   89 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCCCCH
Confidence            445899999999999999999999998  999999841               11112222222  12233221 1122 


Q ss_pred             --HHhh-------hCCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          103 --LENA-------LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       103 --~~ea-------l~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                        .++.       +...|++|++||......   .+.   ...+..|+.    +.+...+.+.+....+.||++|.
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS  165 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              1222       237899999999753221   121   223445543    55666666666655677777764

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.49  E-value=0.00037  Score=60.45  Aligned_cols=113  Identities=18%  Similarity=0.265  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     .++..+. .-+|   .++.       
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  9999998762  22222221     1122111 0112   1222       


Q ss_pred             hCCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|++||......   .+.   ...+..|+.    +.+...+.+.+..+.+.|+++|.
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  140 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIAS  140 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            237999999999753221   121   234555644    45555566777665677777664

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.48  E-value=0.00054  Score=60.07  Aligned_cols=145  Identities=12%  Similarity=0.013  Sum_probs=78.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHh-------hhCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LEN-------ALTG  109 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~e-------al~~  109 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|+++... ...+....  ..... ..-+|   ..+       .+..
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~--~~~~~-~Dv~~~~~v~~~~~~~~~~~g~   99 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAG--AVALY-GDFSCETGIMAFIDLLKTQTSS   99 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHT--CEEEE-CCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcC--CeEEE-CCCCCHHHHHHHHHHHHHhcCC
Confidence            345799999999999999999999997  899999986221 11122111  11110 01112   111       2247


Q ss_pred             CCEEEEccCCCCCCC--Cchh---hHHHhhHHHH----HHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCC
Q 023671          110 MDLVIIPAGVPRKPG--MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  180 (279)
Q Consensus       110 ADiVIitag~~~k~g--~~r~---d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~  180 (279)
                      .|++|++||......  .+..   ..+..|+...    +...+.+.+. ..+.||++|.....            .+.+.
T Consensus       100 iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~------------~~~~~  166 (260)
T 3gem_A          100 LRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS-EVADIVHISDDVTR------------KGSSK  166 (260)
T ss_dssp             CSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGG------------TCCSS
T ss_pred             CCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEECChhhc------------CCCCC
Confidence            899999999753322  2222   3455665444    4444444433 34566666643211            12333


Q ss_pred             CCeeeecchhHHHHHHHHHHHcC
Q 023671          181 KKLLGVTMLDVVRANTFVAEVLG  203 (279)
Q Consensus       181 ~kViG~t~lds~R~~~~la~~l~  203 (279)
                      .-.++.+..--..+-+.++..++
T Consensus       167 ~~~Y~asKaa~~~l~~~la~e~~  189 (260)
T 3gem_A          167 HIAYCATKAGLESLTLSFAARFA  189 (260)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHC
Confidence            33444432222335566777765

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.48  E-value=0.00054  Score=60.15  Aligned_cols=115  Identities=20%  Similarity=0.231  Sum_probs=67.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-----  107 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.+++..   +....++...  ..++..+. .-+|   ..+.+     
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~  103 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESDFIEAIQTIVQ  103 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  9999998551   1222223222  12233221 1122   12222     


Q ss_pred             --CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 --TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                        .+.|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus       104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  166 (271)
T 4iin_A          104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVAS  166 (271)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEec
Confidence              37999999999754321   121   234455544    4455555555544 355666553

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.47  E-value=0.0031  Score=55.47  Aligned_cols=149  Identities=16%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEe-CCCCH---Hhhh-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFL-GQPQL---ENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~-~~~d~---~eal-----  107 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|+++  ......++..... ...+..+. .-+|.   .+.+     
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999876  2333344443221 11333322 11222   2222     


Q ss_pred             --CCCCEEEEccCCCCCCC----Cch---hhHHHhhHHHHH----HHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHH
Q 023671          108 --TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  174 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g----~~r---~d~~~~N~~i~~----~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~  174 (279)
                        ...|++|++||.....+    .+.   ...+..|+.-..    ...+.+.+ ...+.||++|...           . 
T Consensus        88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv~isS~~-----------~-  154 (281)
T 3svt_A           88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR-GGGGSFVGISSIA-----------A-  154 (281)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCHH-----------H-
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEEeCHH-----------H-
Confidence              36799999999632221    121   234556765444    44444443 3456677765321           0 


Q ss_pred             hCCCCCCCeeeecchhHHHHHHHHHHHcC
Q 023671          175 AGTYDPKKLLGVTMLDVVRANTFVAEVLG  203 (279)
Q Consensus       175 ~~~~~~~kViG~t~lds~R~~~~la~~l~  203 (279)
                      ..+.+..-.++.+..--..+-+.++..++
T Consensus       155 ~~~~~~~~~Y~asK~a~~~l~~~la~e~~  183 (281)
T 3svt_A          155 SNTHRWFGAYGVTKSAVDHLMQLAADELG  183 (281)
T ss_dssp             HSCCTTCTHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cCCCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence            02334334444433223345556666664

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.47  E-value=0.0011  Score=62.99  Aligned_cols=70  Identities=17%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----------------CCCeEEEEeCCCCHH
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLE  104 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~~~d~~  104 (279)
                      ..|.+|||. |.||..+|..|+..|+  +|+.+|+++.  .+..|....                ....+..   ++|  
T Consensus        11 ~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~--kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd--   80 (431)
T 3ojo_A           11 GSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQ--TIDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT--   80 (431)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS--
T ss_pred             CCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc--
Confidence            459999998 9999999999999998  9999999862  112222210                0123443   223  


Q ss_pred             hhhCCCCEEEEccCCCCC
Q 023671          105 NALTGMDLVIIPAGVPRK  122 (279)
Q Consensus       105 eal~~ADiVIitag~~~k  122 (279)
                        +++||+||++.+.|..
T Consensus        81 --~~~aDvvii~VpTp~~   96 (431)
T 3ojo_A           81 --PEASDVFIIAVPTPNN   96 (431)
T ss_dssp             --CCCCSEEEECCCCCBC
T ss_pred             --hhhCCEEEEEeCCCcc
Confidence              4689999999988764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.47  E-value=0.001  Score=59.44  Aligned_cols=117  Identities=19%  Similarity=0.242  Sum_probs=69.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHhhhhcccCCCeEEEEe-CCCCH
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQL  103 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--------------~~g~~~DL~~~~~~~~v~~~~-~~~d~  103 (279)
                      .+.+.+.|+||+|.+|..++..|+..|.  +|+++|+++              ......++...  ..++..+. .-+|.
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~  101 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRRIIASQVDVRDF  101 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhc--CCceEEEECCCCCH
Confidence            4456899999999999999999999998  999999872              11111222222  12233221 11221


Q ss_pred             ---Hhh-------hCCCCEEEEccCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          104 ---ENA-------LTGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       104 ---~ea-------l~~ADiVIitag~~~k~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                         .+.       +...|++|.+||......    .+.   ...+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus       102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS  178 (299)
T 3t7c_A          102 DAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS  178 (299)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence               222       237999999999653221    122   234555654    45555555555455677777764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.46  E-value=0.00084  Score=59.31  Aligned_cols=116  Identities=14%  Similarity=0.093  Sum_probs=69.2

Q ss_pred             CcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCC---HHhhh-------
Q 023671           41 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d---~~eal-------  107 (279)
                      .+++.|+||+  |.+|..++..|+..|.  +|++.|+++. .....++........... ..-+|   +.+.+       
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~Dl~~~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVK-CDVSLDEDIKNLKKFLEENW   97 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEE-cCCCCHHHHHHHHHHHHHHc
Confidence            4589999998  8999999999999997  9999998762 222223322110111111 11122   22222       


Q ss_pred             CCCCEEEEccCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k-----~--g~~---r~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TN  159 (279)
                      ...|++|++||....     +  ..+   -...+..|+.....+++.+.+.-  ..+.||++|.
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            378999999997532     1  112   12356678777777777666542  2366666654

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.46  E-value=0.00084  Score=58.01  Aligned_cols=145  Identities=15%  Similarity=0.162  Sum_probs=79.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.+.   .+....++....  .++..+. .-+|   .++.+      
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999998  999988754   222223333321  2222221 1122   22223      


Q ss_pred             -CCCCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  176 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~  176 (279)
                       ...|++|++||.....   ..+.   ...+..|+.-    .+...+.+.+.. .+.||++|.-.   .       .  .
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~---~-------~--~  146 (246)
T 3osu_A           80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLSSVV---G-------A--V  146 (246)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHH---H-------H--H
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchh---h-------c--C
Confidence             3789999999975321   1122   2345566554    444445445544 45566655311   0       0  1


Q ss_pred             CCCCCCeeeecchhHHHHHHHHHHHc
Q 023671          177 TYDPKKLLGVTMLDVVRANTFVAEVL  202 (279)
Q Consensus       177 ~~~~~kViG~t~lds~R~~~~la~~l  202 (279)
                      +.|..-.++.+..--..+-+.+++.+
T Consensus       147 ~~~~~~~Y~~sK~a~~~~~~~la~e~  172 (246)
T 3osu_A          147 GNPGQANYVATKAGVIGLTKSAAREL  172 (246)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            34444445554322233555666665

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.45  E-value=0.00034  Score=61.13  Aligned_cols=64  Identities=16%  Similarity=0.203  Sum_probs=45.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|||+ |.+|..++..|...|+  +|.++|+........++....  .  .     +++.++++++|+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g--~--~-----~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG--V--T-----ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT--C--E-----ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC--C--c-----CCHHHHHhcCCEEEEEC
Confidence            58999998 9999999999999888  899988732222222232211  1  1     13467789999999986

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.45  E-value=0.00048  Score=59.71  Aligned_cols=113  Identities=16%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-----HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-----~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++...     ...|+.+...   +...  .....+.+...|++|+
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~~~~---~~~~--~~~~~~~~g~id~lv~   87 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDA---VDRA--FTAVEEHQGPVEVLVS   87 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHH---HHHH--HHHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            45899999999999999999999997  999999875211     1112221110   0000  0001122346899999


Q ss_pred             ccCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCceEEEecCCC
Q 023671          116 PAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       116 tag~~~k~---g~~---r~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      +||.....   ..+   -...+..|+...    +...+.+++. ..+.|+++|...
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  142 (247)
T 1uzm_A           88 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVS  142 (247)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCHh
Confidence            99975321   112   223455565444    4444444433 346667666543

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.45  E-value=0.00079  Score=58.83  Aligned_cols=115  Identities=15%  Similarity=0.156  Sum_probs=66.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+...   ......++....  .++..+. .-+|.   .+.+      
T Consensus        26 ~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           26 SRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCREVLEHEIAQ  101 (267)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999998  886765433   222223333221  2233221 11221   2222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||......   .+   -...+..|+..    ++...+.+.+..+.+.||++|.
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  164 (267)
T 4iiu_A          102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS  164 (267)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence             37999999999754321   12   12345566544    3444444444456677777664

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.44  E-value=0.0038  Score=54.05  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=66.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CC--CC---HHhh-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQ--PQ---LENA-----  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~--~d---~~ea-----  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++..... ..+..+. ..  .|   ..+.     
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999986  2222233332111 1111111 11  12   1122     


Q ss_pred             --hCCCCEEEEccCCCCC--C--CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          107 --LTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 --l~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                        +...|++|++||....  +  ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  152 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFTSS  152 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECC
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEECC
Confidence              2378999999997422  1  1222   2345566544    44445544543 3456666654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.44  E-value=0.00069  Score=58.96  Aligned_cols=115  Identities=13%  Similarity=0.127  Sum_probs=69.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-----  108 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++...  ..++..+. .-+|   ..+.++     
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            346899999999999999999999998  999999976  23333344332  12333321 1122   222232     


Q ss_pred             -CCCEEEEccCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          109 -GMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 -~ADiVIitag~~~k~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ..|++|++||......   .+.   ...+..|+    .+.+.+.+.+.+.. .+.|+++|.
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGA  142 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence             6799999999754211   121   23345554    45556666666554 455666553

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.44  E-value=0.00072  Score=59.59  Aligned_cols=116  Identities=16%  Similarity=0.255  Sum_probs=67.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh------
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------  106 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------  106 (279)
                      .+.+.+.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.....  .+..+. .-+|   ..+.      
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  101 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLK  101 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHH
Confidence            3456889999999999999999999998  999999976  2222233332211  111111 1112   1222      


Q ss_pred             -hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          107 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 -l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       +...|++|++||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.
T Consensus       102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (270)
T 3ftp_A          102 EFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITS  164 (270)
T ss_dssp             HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence             23789999999975322   1122   2345556544    44444455444 3466666653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.44  E-value=0.0038  Score=55.70  Aligned_cols=116  Identities=20%  Similarity=0.261  Sum_probs=69.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---H-------hh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E-------NA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~-------ea  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.... ..++..+. .-+|.   +       +.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999986  233334443322 12333321 11221   1       12


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|.+||.....   ..+.   ...+..|+..    .+...+.+.+... +.||++|.
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~isS  178 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTSS  178 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEeC
Confidence            34779999999975321   1222   2345556544    4444555555543 45555554

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.44  E-value=0.00046  Score=60.91  Aligned_cols=115  Identities=11%  Similarity=0.190  Sum_probs=68.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  .++..+. .-+|   ..+.+      
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999876  222333443321  2233221 1112   22222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||......   .+..   ..+..|+.    +.+...+.+.+.. .+.||++|.
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS  162 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGS  162 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             27899999999753221   1222   24555654    4455556555544 356666654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.43  E-value=0.003  Score=57.95  Aligned_cols=120  Identities=21%  Similarity=0.268  Sum_probs=71.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---------hHHhhhhcccCCCeEEEEe-CCCC---HHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGFL-GQPQ---LENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---------g~~~DL~~~~~~~~v~~~~-~~~d---~~ea  106 (279)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.|+++..         ....++...  ..++..+. .-+|   .+++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAV--GGKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHH
Confidence            456899999999999999999999997  99999987621         122233322  12233221 1122   1222


Q ss_pred             h-------CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCCCCc
Q 023671          107 L-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNS  163 (279)
Q Consensus       107 l-------~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNPvd~  163 (279)
                      +       .+.|++|++||.....   ..+.   ...+..|+.-...+.+.+...   ...+.||++|.+...
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~  192 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNL  192 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHc
Confidence            2       3899999999975322   1121   234666766555555554332   234677777766543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.42  E-value=0.0002  Score=63.66  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++..  ...+...    .+..   .+++.++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~----g~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDA--CKEFQDA----GEQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHc----CCee---cCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999999887  89999987621  1122221    1222   235677789999999986

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.42  E-value=0.00053  Score=60.30  Aligned_cols=113  Identities=24%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCC---HHhhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENAL-------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d---~~eal-------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++..   ....... .-+|   ..+.+       
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~-Dv~~~~~v~~~~~~~~~~~   83 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR---GAVHHVV-DLTNEVSVRALIDFTIDTF   83 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT---TCEEEEC-CTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC---CeEEEEC-CCCCHHHHHHHHHHHHHHc
Confidence            456899999999999999999999998  9999999872  222222211   1111111 1112   22222       


Q ss_pred             CCCCEEEEccCCCCC-CC----Cch---hhHHHhhHHHHHHH----HHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRK-PG----MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k-~g----~~r---~d~~~~N~~i~~~i----~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|++||.... ..    .+.   ...+..|+.-...+    .+.+.+. ..+.|+++|.
T Consensus        84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  146 (271)
T 3tzq_B           84 GRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISS  146 (271)
T ss_dssp             SCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence            379999999997522 11    121   23456676544444    4444543 4566666654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.41  E-value=0.00096  Score=58.69  Aligned_cols=116  Identities=21%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---------------chhHHhhhhcccCCCeEEEEe-CCCCH
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------TPGVTADISHMDTGAVVRGFL-GQPQL  103 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---------------~~g~~~DL~~~~~~~~v~~~~-~~~d~  103 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.               ......++...  ...+..+. ..+|.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~   85 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTRDF   85 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence            456899999999999999999999998  999999841               11111222221  12233221 11221


Q ss_pred             ---Hhh-------hCCCCEEEEccCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          104 ---ENA-------LTGMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       104 ---~ea-------l~~ADiVIitag~~~k~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                         .+.       +...|++|++||......   .+.   ...+..|+    .+.+...+.+.+..+.+.||++|.
T Consensus        86 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  161 (277)
T 3tsc_A           86 DRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISS  161 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence               111       246899999999754321   122   22345554    356666666777665677777764

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.41  E-value=0.00086  Score=57.97  Aligned_cols=116  Identities=14%  Similarity=0.145  Sum_probs=66.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.... ...+..+. .-+|   +.+.       +
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999997  9999998652  22222232111 12232221 1122   1122       2


Q ss_pred             CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHH----HHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~----~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|++||......   .+.   ...+..|+....    .+.+.+.+....+.|+++|.
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            35899999998753211   111   234555654444    44444444444466666654

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.41  E-value=0.0013  Score=57.10  Aligned_cols=110  Identities=16%  Similarity=0.211  Sum_probs=64.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-HhhhhcccCCCeEEEEeCCCC---HHhh-------hCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQ---LENA-------LTG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~-~~DL~~~~~~~~v~~~~~~~d---~~ea-------l~~  109 (279)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++.... ..++.    . .... ..-+|   ++++       +..
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~-~~~~-~D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIG----G-AFFQ-VDLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHT----C-EEEE-CCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhh----C-CEEE-eeCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999997  9999998763211 11221    0 1110 11112   1222       237


Q ss_pred             CCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHH----HHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~----~I~~~~p~a~viv~TN  159 (279)
                      .|++|++||.....   ..+.   ...+..|+.....+.+    .+.+. ..+.|+++|.
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  136 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVAS  136 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            89999999875321   1121   2345667655444444    44332 3456666654

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.41  E-value=0.0011  Score=58.52  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~   62 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSK   62 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45899999999999999999999997  999999876

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.40  E-value=0.00093  Score=60.26  Aligned_cols=117  Identities=16%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHhhhhcccCCCeEEEEe-CCCC--
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQ--  102 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--------------~~g~~~DL~~~~~~~~v~~~~-~~~d--  102 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.              .......+...  ..++..+. .-+|  
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~  120 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLA  120 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            345789999999999999999999998  999999862              01111112211  12233221 1122  


Q ss_pred             -HHhhh-------CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          103 -LENAL-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       103 -~~eal-------~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                       ..+.+       ...|++|.+||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.||++|..
T Consensus       121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~  196 (317)
T 3oec_A          121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST  196 (317)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence             12222       3789999999975321   1222   234555644    455566666655556777777643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.40  E-value=0.00054  Score=64.66  Aligned_cols=138  Identities=18%  Similarity=0.212  Sum_probs=84.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHhh-hCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~ea-l~~ADiVIi  115 (279)
                      ..++|.|+|+ |.+|..++..|...|+  +++++|.++..  +..+.... ..-+.+  ..++   +.++ +.+||+||+
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g-~~vi~G--Dat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFG-MKVFYG--DATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTT-CCCEES--CTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCC-CeEEEc--CCCCHHHHHhcCCCccCEEEE
Confidence            3468999999 9999999999999998  99999998621  11122211 111111  1122   2233 689999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-CCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHH
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  194 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-NPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~  194 (279)
                      +.+.               -.....++..+++.+|+..|+.-+ ++-..      +.+.+ .|  .+.|+--+..-+.++
T Consensus        75 ~~~~---------------~~~n~~i~~~ar~~~p~~~Iiara~~~~~~------~~L~~-~G--ad~Vi~~~~~~a~~l  130 (413)
T 3l9w_A           75 AIDD---------------PQTNLQLTEMVKEHFPHLQIIARARDVDHY------IRLRQ-AG--VEKPERETFEGALKT  130 (413)
T ss_dssp             CCSS---------------HHHHHHHHHHHHHHCTTCEEEEEESSHHHH------HHHHH-TT--CSSCEETTHHHHHHH
T ss_pred             CCCC---------------hHHHHHHHHHHHHhCCCCeEEEEECCHHHH------HHHHH-CC--CCEEECccHHHHHHH
Confidence            8631               123345666777888987665554 44322      22333 23  356765555445566


Q ss_pred             HHHHHHHcCCCCCCC
Q 023671          195 NTFVAEVLGLDPRDV  209 (279)
Q Consensus       195 ~~~la~~l~v~~~~V  209 (279)
                      -..+-..+|+++..+
T Consensus       131 a~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          131 GRLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHHTTCCHHHH
T ss_pred             HHHHHHHcCCCHHHH
Confidence            555667788888665

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.40  E-value=0.00035  Score=61.50  Aligned_cols=113  Identities=23%  Similarity=0.364  Sum_probs=67.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     ..+..+. .-+|.   .+.       
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAERE   98 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999997  9999998762  22222221     1222211 11221   122       


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +...|++|++||.....   ..+.   ...+..|+..    .+.+.+.+.+.. .+.||++|.-
T Consensus        99 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~  161 (266)
T 3grp_A           99 MEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSI  161 (266)
T ss_dssp             HTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence            23799999999975321   1121   2345566555    666666666554 4566666543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.40  E-value=0.00054  Score=54.35  Aligned_cols=96  Identities=9%  Similarity=0.099  Sum_probs=59.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHh-hhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LEN-ALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~e-al~~ADiVIit  116 (279)
                      ..+|.|+|+ |.+|..++..|...|+  +++++|.++..  ...+....  ..+. ....++   +.+ .+.++|+||++
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g--~~~i-~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERG--VRAV-LGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEE-ESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcC--CCEE-ECCCCCHHHHHhcCcccCCEEEEE
Confidence            358999999 9999999999999998  99999998621  12222211  1111 111122   111 25789999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .+..           ..|..    ++..+++.+|+..++.-.|
T Consensus        79 ~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           79 IPNG-----------YEAGE----IVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             CSCH-----------HHHHH----HHHHHHHHCSSSEEEEEES
T ss_pred             CCCh-----------HHHHH----HHHHHHHHCCCCeEEEEEC
Confidence            6421           23433    3445666778876665543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.39  E-value=0.00091  Score=58.49  Aligned_cols=114  Identities=14%  Similarity=0.059  Sum_probs=67.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  .++..+. .-+|.   .+.+      
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999976  222333343321  2222221 11221   2222      


Q ss_pred             -CCCCEEEEccCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||.....+    .+.   ...+..|+.    +.+.+.+.+.+..  +.||++|.
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  147 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNS  147 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECC
T ss_pred             cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECc
Confidence             37899999998642221    122   223455544    4444555555433  56666654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.39  E-value=0.00045  Score=61.08  Aligned_cols=113  Identities=18%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-------
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-------  108 (279)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++...   ..+..+. .-+|   ..++++       
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999997  999999876  22222233221   1222221 1122   222333       


Q ss_pred             CCCEEEEccCCCCC--C--CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRK--P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ..|++|++||....  +  ..+.   ...+..|+..    .+.+.+.+.+......|+++|.
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            45999999997532  1  1111   2245555444    5666666666544326666654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.39  E-value=0.00047  Score=59.40  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=64.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      ++++.|+||+|.+|..++..|+..|.  +|++.|+++  .+....++..     .+..+. .-+|   .++.       +
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999998  999999976  2222222211     122211 1112   1122       2


Q ss_pred             CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC--CCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TN  159 (279)
                      ...|++|++||.....   ..+.   ...+..|+.....+.+.+.+.-  ..+.|+++|.
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS  135 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLS  135 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            3679999999974321   1222   2345667665544444443321  2235666654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.38  E-value=0.00057  Score=54.82  Aligned_cols=99  Identities=9%  Similarity=0.019  Sum_probs=59.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chh-HHhhhhcccCCCeEEEEeC-CCC---HHhh-hCCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG-VTADISHMDTGAVVRGFLG-QPQ---LENA-LTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g-~~~DL~~~~~~~~v~~~~~-~~d---~~ea-l~~ADiV  113 (279)
                      .++|.|+|+ |.+|+.++..|...|+  +++++|.+. ... ...+....  .  +..+.+ .++   +.++ +.++|.|
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~--~--~~~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD--N--ADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT--T--CEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcC--C--CeEEEcCCCCHHHHHHcChhhCCEE
Confidence            458999998 9999999999999887  999999864 111 11111111  1  111111 112   3333 8899999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE-ecCCC
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPV  161 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv-~TNPv  161 (279)
                      |++.+.         +  ..|.    .++...++.+|+..++. +.||.
T Consensus        76 i~~~~~---------d--~~n~----~~~~~a~~~~~~~~ii~~~~~~~  109 (153)
T 1id1_A           76 LALSDN---------D--ADNA----FVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             EECSSC---------H--HHHH----HHHHHHHHHTSSSCEEEECSSGG
T ss_pred             EEecCC---------h--HHHH----HHHHHHHHHCCCCEEEEEECCHH
Confidence            998631         1  2343    33444555667665555 45665

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.37  E-value=0.00074  Score=59.15  Aligned_cols=111  Identities=21%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-------HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~-------~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....       ..|+.+...   +...  .....+.+.+.|++
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~---v~~~--~~~~~~~~g~iD~l  100 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSADPDIHTVAGDISKPET---ADRI--VREGIERFGRIDSL  100 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCSSTTEEEEESCTTSHHH---HHHH--HHHHHHHHSCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcccCceEEEEccCCCHHH---HHHH--HHHHHHHCCCCCEE
Confidence            35799999999999999999999998  9999998752110       111111100   0000  00011223489999


Q ss_pred             EEccCCCCCCC---Cch---hhHHHhhHHHH----HHHHHHHHHhCCCceEEEecC
Q 023671          114 IIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       114 Iitag~~~k~g---~~r---~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++||......   .+.   ...+..|+...    +...+.+.+.. .+.|+++|.
T Consensus       101 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS  155 (260)
T 3un1_A          101 VNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG-SGHIVSITT  155 (260)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence            99999753221   121   23455665544    44444445443 455665543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.37  E-value=0.00026  Score=61.75  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+|||+|||+ |.+|..++..|...+.  +|.++|+++..  ..++.... .  +..   .+++.++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~--~~~~~~~~-g--~~~---~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL-A--LPY---AMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH-T--CCB---CSSHHHHHHTCSEEEECSC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHHc-C--CEe---eCCHHHHHhcCCEEEEEeC
Confidence            3579999998 9999999999988885  89999987521  11222110 0  111   2466778899999999873

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.37  E-value=0.0012  Score=57.99  Aligned_cols=115  Identities=14%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.... ...+..+. .-+|   +.+++       
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999998  999999876  222222331110 11222211 1122   12222       


Q ss_pred             CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHH----HHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i----~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|++||......   .+.   ...+..|+.....+    ++.+.+. ..+.||++|.
T Consensus        98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  158 (267)
T 1vl8_A           98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGS  158 (267)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            37899999999753221   121   23455665544444    4444433 3356666654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.37  E-value=0.00095  Score=58.80  Aligned_cols=115  Identities=13%  Similarity=0.155  Sum_probs=66.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEe-CCCCH---Hhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~-~~~d~---~eal------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++..... ...+..+. .-+|.   ++++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  999999876  2222233322110 01233221 11221   2222      


Q ss_pred             -CCCCEEEEccCCCCCCC-------Cch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG-------MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g-------~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||......       .+.   ...+..|+..    .+...+.+.+..  +.||++|.
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  148 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSS  148 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecC
Confidence             37899999999753211       111   2344556544    444444444333  66666654

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.37  E-value=0.00058  Score=59.10  Aligned_cols=118  Identities=15%  Similarity=0.146  Sum_probs=68.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh----
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL----  107 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~-~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal----  107 (279)
                      .+.++|.|+||+|.+|..++..|+..|.  +|++.|. +.  ......++....  .++..+. .-+|   .++.+    
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   86 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDWDSTKQAFDKVK   86 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeeEEEecCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999997  8898884 33  222223333221  1222211 1122   22222    


Q ss_pred             ---CCCCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCCC
Q 023671          108 ---TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       108 ---~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                         ...|++|++||.....   ..+.   ...+..|+..    .+.+.+.+.+.. .+.|+++|...
T Consensus        87 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  152 (256)
T 3ezl_A           87 AEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVN  152 (256)
T ss_dssp             HHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCC
T ss_pred             HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchh
Confidence               3789999999975422   1222   2345566554    555566666554 35666666544

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.36  E-value=0.0016  Score=57.02  Aligned_cols=116  Identities=16%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     .++..+. .-+|   +.+.+      
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEE   77 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998752  11112221     1222211 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  162 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd  162 (279)
                       ...|++|++||.....   ..+.   ...+..|+.....+.+.+.+.- ..+.|+++|....
T Consensus        78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence             3579999999875321   1122   2356678777666666666543 1456777765443

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.36  E-value=0.0021  Score=55.68  Aligned_cols=110  Identities=14%  Similarity=0.219  Sum_probs=64.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------C
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~  108 (279)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     ..+..+. .-+|   ..+.+       .
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3688999999999999999999997  9999998752  11122221     1122111 1112   22222       3


Q ss_pred             CCCEEEEccCCCC--CC--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          109 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~--k~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.|++|++||...  .+  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  134 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGS  134 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcc
Confidence            7899999999753  11  1121   234555644    4555556555543 456666654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.36  E-value=0.00034  Score=60.80  Aligned_cols=114  Identities=17%  Similarity=0.267  Sum_probs=67.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++|+++.  .....++.     ..+..+. .-+|   .++.+      
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIG-----DAALAVAADISKEADVDAAVEAALSK   80 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999997  9999999762  22222221     1122111 1112   22222      


Q ss_pred             -CCCCEEEEccCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhC---CCceEEEecCC
Q 023671          108 -TGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCC---PNATVNLISNP  160 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~---p~a~viv~TNP  160 (279)
                       ...|++|++||....++    .+.   ...+..|+.    +.+.+.+.+.+..   ..+.|+++|..
T Consensus        81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~  148 (261)
T 3n74_A           81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST  148 (261)
T ss_dssp             HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred             cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence             37899999999754222    121   223444543    4566666666543   24566666643

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.35  E-value=0.0035  Score=55.36  Aligned_cols=112  Identities=19%  Similarity=0.185  Sum_probs=66.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hh-------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------A  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~e-------a  106 (279)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.|+++  ......++.     ..+..+. .-+|.   .+       .
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIG-----CGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CcceEEEecCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999998  999999876  222222221     1111111 11221   11       2


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|.+||.....   ..+.   ...+..|+..    .+...+.+.+. ..+.||++|.
T Consensus       101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  162 (277)
T 3gvc_A          101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSS  162 (277)
T ss_dssp             HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            23789999999975321   1222   2345566654    44455555443 4566777664

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.35  E-value=0.0005  Score=58.47  Aligned_cols=70  Identities=19%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHhh-hCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~ea-l~~ADiVIita  117 (279)
                      |||.|+|+ |.+|+.++..|...|+  +++++|.++..  ..++.... ...+. ....++   +.++ +.+||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~l~~~~-~~~~i-~gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDREL--CEEFAKKL-KATII-HGDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHHS-SSEEE-ESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHHc-CCeEE-EcCCCCHHHHHhcCcccCCEEEEec
Confidence            58999998 9999999999999998  99999987621  12222111 11111 111122   3333 78999999986


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      +
T Consensus        74 ~   74 (218)
T 3l4b_C           74 P   74 (218)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.35  E-value=0.00082  Score=59.20  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=68.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|.   .+.       +
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999998  899999876  223333443321  2222221 11221   112       2


Q ss_pred             CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  140 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGS  140 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcC
Confidence            37899999999753221   121   223455544    4455556565543 466666654

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.34  E-value=0.0027  Score=55.92  Aligned_cols=116  Identities=11%  Similarity=0.032  Sum_probs=67.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.... ..++..+. .-+|.   .+.+      
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999976  222223332211 12222221 11221   1222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHH----HHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I----~~~~p~a~viv~TN  159 (279)
                       ...|++|++||......   .+.   ...+..|+.-...+.+.+    .+. ..+.||++|.
T Consensus       103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (277)
T 4fc7_A          103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNITA  164 (277)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECC
T ss_pred             cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence             37899999998643211   121   234556655544444443    333 3466666653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.34  E-value=0.0018  Score=56.18  Aligned_cols=109  Identities=16%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCCHH---hhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLE---NALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d~~---eal~~ADiVIi  115 (279)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  ...++.      .+..+. ...+.+   +.+.+.|++|+
T Consensus        18 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~--~~~~~~------~~~~~~D~~~~~~~~~~~~~~iD~lv~   87 (249)
T 1o5i_A           18 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSG------HRYVVCDLRKDLDLLFEKVKEVDILVL   87 (249)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTC------SEEEECCTTTCHHHHHHHSCCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHH--HHHhhC------CeEEEeeHHHHHHHHHHHhcCCCEEEE
Confidence            346899999999999999999999997  9999998751  111121      111110 011222   23448999999


Q ss_pred             ccCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          116 PAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       116 tag~~~k~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +||......   .+.   ...+..|+    .+.+.+.+.+.+.. .+.|+++|.
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (249)
T 1o5i_A           88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  140 (249)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence            999753211   111   22344454    34556667776654 356666654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.33  E-value=0.0011  Score=58.99  Aligned_cols=116  Identities=10%  Similarity=0.073  Sum_probs=69.4

Q ss_pred             CCcEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEe-CCCC---HHhh------
Q 023671           40 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~--VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------  106 (279)
                      +.+++.|+||+|+  +|..++..|+..|.  +|++.|+++ ......++....  ..+..+. .-+|   .++.      
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL--GAFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH--TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHHH
Confidence            3458999999988  99999999999997  899999875 112222222211  1122211 1122   1122      


Q ss_pred             -hCCCCEEEEccCCCC-----CC--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          107 -LTGMDLVIIPAGVPR-----KP--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       107 -l~~ADiVIitag~~~-----k~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                       +...|++|++||...     .+  ..+.   ...+..|+.....+.+.+.+.- ..+.||++|.
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence             237899999999763     11  1121   2356667766666666665543 3567777664

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.33  E-value=0.002  Score=55.93  Aligned_cols=119  Identities=15%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEe-CCCCH---Hhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFL-GQPQL---ENA------  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~-~~~d~---~ea------  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++...... ..+..+. .-+|.   .+.      
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999986  22222333222101 1222211 11221   112      


Q ss_pred             -hCCCCEEEEccCCCCCC--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCCC
Q 023671          107 -LTGMDLVIIPAGVPRKP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       107 -l~~ADiVIitag~~~k~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                       +...|++|.+||.....  ..+.   ...+..|+.    +.+.+.+.+++.. .+.|+++|...
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  147 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVASRA  147 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC--
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEccHH
Confidence             23789999999975322  1221   233455544    4555555555543 46666666533

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.33  E-value=0.00074  Score=58.51  Aligned_cols=106  Identities=16%  Similarity=0.254  Sum_probs=63.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE-eCCCC---HHhhh-------CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQ---LENAL-------TG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~-~~~~d---~~eal-------~~  109 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++..      ...  .  +..+ ..-+|   +.+++       .+
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~--~--~~~~~~D~~d~~~~~~~~~~~~~~~g~   74 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQY--P--FATEVMDVADAAQVAQVCQRLLAETER   74 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCC--S--SEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcC--C--ceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999998  99999987521      000  0  1110 01112   22222       37


Q ss_pred             CCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .|++|++||.....   ..+.   ...+..|+.    +.+...+.+.+.. .+.|+++|.
T Consensus        75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  133 (250)
T 2fwm_X           75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVAS  133 (250)
T ss_dssp             CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            89999999975321   1122   234555654    4444555555544 355666553

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.33  E-value=0.0014  Score=58.01  Aligned_cols=112  Identities=17%  Similarity=0.089  Sum_probs=71.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEe-CCCC---HHhhhC---CC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENALT---GM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~---~A  110 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++..  ....++     ..++..+. .-+|   ..+.++   ..
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~i   87 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGA   87 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCC
Confidence            446899999999999999999999997  99999997622  111222     12333321 1122   222333   67


Q ss_pred             CEEEEccCCCCCC-C---CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          111 DLVIIPAGVPRKP-G---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       111 DiVIitag~~~k~-g---~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++|++||..... .   ..-...+..|+.....+.+.+.+.-.+ .|+++|.
T Consensus        88 D~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS  139 (291)
T 3rd5_A           88 DVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSS  139 (291)
T ss_dssp             EEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECC
T ss_pred             CEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeec
Confidence            9999999975322 1   122356788888888888887766544 4555543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.33  E-value=0.0037  Score=55.27  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=67.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.   ......++.... ...+..+. .-+|   ..+.+      
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999998  999999854   222223333221 12333221 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||......   .+.   ...+..|+.    +.+...+.+.+.. .+.||++|.
T Consensus       102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  163 (281)
T 3v2h_A          102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIAS  163 (281)
T ss_dssp             TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence             37899999999753221   122   234555654    4445555555543 456666654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.31  E-value=0.0012  Score=58.15  Aligned_cols=77  Identities=14%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----H-------hh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----E-------NA  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----~-------ea  106 (279)
                      .++|.|+||+|.+|..++..|+.+|.  +|++.|+++  ......++.... ..++..+. .-+|.    .       +.
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            45789999999999999999999998  999999986  223334444322 12333321 11221    1       11


Q ss_pred             hCCCCEEEEccCCC
Q 023671          107 LTGMDLVIIPAGVP  120 (279)
Q Consensus       107 l~~ADiVIitag~~  120 (279)
                      +...|++|++||..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            24799999999975

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.31  E-value=0.00097  Score=59.60  Aligned_cols=115  Identities=16%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~-~~~d---~~eal------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++..... ...+..+. .-+|   ..+++      
T Consensus        26 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           26 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  999999876  2222233322110 00233221 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCCCC-----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG-----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g-----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|.+||......     .+.   ...+..|+.    +.+...+.+.+..  +.||++|.
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS  166 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSS  166 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcC
Confidence             37899999999753211     111   234555654    4444455554433  66666654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.31  E-value=0.0017  Score=57.04  Aligned_cols=116  Identities=13%  Similarity=0.102  Sum_probs=67.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|   ..+++      
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  999999876  222223332211  1222221 1122   11222      


Q ss_pred             --CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          108 --TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 --~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                        ...|++|++||.....   ..+.   ...+..|+.    +.+...+.+++.. .+.||++|..
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  159 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSI  159 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCG
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCH
Confidence              5789999999975321   1122   223445654    4444455555443 4566666643

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.31  E-value=0.0014  Score=56.61  Aligned_cols=108  Identities=11%  Similarity=0.128  Sum_probs=64.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-e--CCC--chhHHhhhhcccCCCeEEEEeCCCCHHhh-------hCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVN--TPGVTADISHMDTGAVVRGFLGQPQLENA-------LTG  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D--~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~ea-------l~~  109 (279)
                      +++.|+||+|.+|..++..|+..|.  +|++. |  +++  ......++ .   .  .... ...+..+.       +..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~---~--~~~~-~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P---G--TIAL-AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T---T--EEEC-CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C---C--Cccc-CHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999998  99999 5  765  22222222 1   1  1111 11222222       337


Q ss_pred             CCEEEEccCCCCC---C---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRK---P---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k---~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .|++|++||....   .   ..+.   ...+..|+.    +.+...+.+.+. ..+.||++|.
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  134 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITS  134 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            8999999997543   1   1121   234555654    444455555443 3466776664

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.31  E-value=0.00032  Score=60.97  Aligned_cols=111  Identities=19%  Similarity=0.318  Sum_probs=65.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  +....++...     ...+. .-+|   .++.+      
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~d~~~v~~~~~~~~~~   80 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDN-----GKGMALNVTNPESIEAVLKAITDE   80 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccc-----ceEEEEeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998762  2222222211     11110 1112   22222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T  158 (279)
                       ...|++|++||......   .+.   ...+..|+.    +.+...+.+.+.. .+.|+++|
T Consensus        81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~is  141 (248)
T 3op4_A           81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVG  141 (248)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence             37999999999754321   121   234555654    4455555555443 45666665

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.31  E-value=0.003  Score=56.06  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D-~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.| ++.
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            45799999999999999999999998  999999 765

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.30  E-value=0.003  Score=55.11  Aligned_cols=118  Identities=12%  Similarity=0.089  Sum_probs=69.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hh-------h
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------A  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~e-------a  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.......++..+. .-+|.   .+       .
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999976  222333343311111233221 11221   11       1


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      +...|++|++||.....   ..+.   ...+..|+.-...+.+.+.+.   ...+.|+++|.
T Consensus        85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (265)
T 3lf2_A           85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNS  146 (265)
T ss_dssp             HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECC
Confidence            23789999999975321   1222   234566765555555544332   23456666653

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.30  E-value=0.0018  Score=55.81  Aligned_cols=113  Identities=15%  Similarity=0.196  Sum_probs=65.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCCH---H---hhhCCCCE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---E---NALTGMDL  112 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d~---~---eal~~ADi  112 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++...  .++...   .++..+. .-+|.   +   +.+...|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~   77 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKL--QELEKY---PGIQTRVLDVTKKKQIDQFANEVERLDV   77 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--GGGGGS---TTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhc---cCceEEEeeCCCHHHHHHHHHHhCCCCE
Confidence            345899999999999999999999997  999999875211  111111   0122211 11221   1   12457899


Q ss_pred             EEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          113 VIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       113 VIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +|++||......   .+.   ...+..|+.    +.+...+.+.+.. .+.|+++|..
T Consensus        78 lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  134 (246)
T 2ag5_A           78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSV  134 (246)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEech
Confidence            999999753211   121   223455554    4444555554443 4566666543

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.29  E-value=0.0013  Score=57.25  Aligned_cols=115  Identities=16%  Similarity=0.165  Sum_probs=67.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-h--HHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G--VTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g--~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++.. .  ...++.... ...+..+. .-+|   +.+.+      
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  89999987622 1  122222110 11222221 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS  142 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence             37999999999753211   121   234555655    5555666665544 456666654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.29  E-value=0.0009  Score=61.26  Aligned_cols=63  Identities=22%  Similarity=0.266  Sum_probs=46.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|.+...  ..+.+.   .    +..   . ++.+++++||+||++.
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~a~~~---G----~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAKAEAH---G----LKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHT---T----CEE---E-CHHHHHHTCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHHHC---C----CEE---c-cHHHHHhcCCEEEEeC
Confidence            458999998 9999999999999887  89999987522  111111   1    122   1 4567899999999986

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.29  E-value=0.00066  Score=58.72  Aligned_cols=111  Identities=19%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCC---HHhhh-------C
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENAL-------T  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d---~~eal-------~  108 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     ..... ..-+|   +++++       .
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~-~D~~~~~~~~~~~~~~~~~~g   76 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVG-----AHPVV-MDVADPASVERGFAEALAHLG   76 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTT-----CEEEE-CCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CEEEE-ecCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999998  9999998752  11111110     11110 11112   12222       3


Q ss_pred             CCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671          109 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  159 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN  159 (279)
                      ..|++|++||......   .+   -...+..|+.....+.+.+.+.   ...+.|+++|.
T Consensus        77 ~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  136 (245)
T 1uls_A           77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS  136 (245)
T ss_dssp             SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            5899999999753211   11   1234566766555555444433   23456666664

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.28  E-value=0.0012  Score=58.20  Aligned_cols=115  Identities=19%  Similarity=0.282  Sum_probs=66.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--------------hhHHhhhhcccCCCeEEEEe-CCCC--
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PGVTADISHMDTGAVVRGFL-GQPQ--  102 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--------------~g~~~DL~~~~~~~~v~~~~-~~~d--  102 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.              ......+...  ..++..+. .-+|  
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~   84 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKDRA   84 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCCHH
Confidence            345899999999999999999999998  9999998631              1111122221  12232221 1122  


Q ss_pred             -HHhhh-------CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          103 -LENAL-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       103 -~~eal-------~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       .++.+       ...|++|++||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  158 (281)
T 3s55_A           85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN-YGRIVTVSS  158 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence             22222       3799999999975321   1222   234556654    4444455455543 466666654

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.0007  Score=60.05  Aligned_cols=116  Identities=19%  Similarity=0.229  Sum_probs=68.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++...  ...+..+. .-+|   ..+.       +
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999998  899999876  22223333321  12233221 1112   1122       2


Q ss_pred             CCCCEEEEccCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCCC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ...|++|++||.....+    .+.   ...+..|+.    +.+...+.+.+. ..+.|+++|...
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  147 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSFV  147 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCSB
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcChh
Confidence            37899999999653221    121   234555644    444455555543 345666666433

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.26  E-value=0.0011  Score=57.76  Aligned_cols=114  Identities=16%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      .+++.|+||+|.+|.+++..|+..|.  +|++. ++++  ......++....  .++..+. .-+|   .++.+      
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  88886 6654  222233333321  2233221 1122   12222      


Q ss_pred             -CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||......   .+.   ...+..|+..    .+...+.+.+. ..+.|+++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS  141 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSISS  141 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence             35699999998643221   121   2245556544    44444444543 3456666653

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.25  E-value=0.0032  Score=55.60  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            35799999999999999999999997  999999876

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.25  E-value=0.00088  Score=58.19  Aligned_cols=118  Identities=14%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             CCCcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCC---HHhhh-----
Q 023671           39 AAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-----  107 (279)
Q Consensus        39 ~~~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d---~~eal-----  107 (279)
                      .+.++|.|+||+  |.+|..++..|+..|.  +|++.|+++ ......++............ .-+|   ..+.+     
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPC-DVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEEC-CCCCHHHHHHHHHHHHH
Confidence            455699999998  9999999999999998  999999875 22222223221111111111 1122   22222     


Q ss_pred             --CCCCEEEEccCCCCC-----C--C-Cch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          108 --TGMDLVIIPAGVPRK-----P--G-MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       108 --~~ADiVIitag~~~k-----~--g-~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                        ...|++|++||....     +  . .+.   ...+..|+.....+.+.+.+.- +.+.|+++|.
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence              367999999997532     1  1 222   2345667666666666665543 3456666654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.24  E-value=0.0014  Score=57.05  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=70.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH----------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL----------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~----------~ea  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     .++..+. .-+|.          .+.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998762  11112221     1122111 11221          122


Q ss_pred             hCCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  160 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNP  160 (279)
                      +...|++|++||......   .+.   ...+..|+.-...+.+.+.+.- ..+.|+++|..
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            347899999999764221   122   2356778777667777766542 34667776643

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.23  E-value=0.00037  Score=63.97  Aligned_cols=63  Identities=16%  Similarity=0.266  Sum_probs=48.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...+||+|||. |.+|+.+|..+...|.  +|..+|++.....       .    ...   ..++++.+++||+|+++..
T Consensus       162 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-------g----~~~---~~~l~ell~~aDvVil~vP  224 (333)
T 3ba1_A          162 FSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-------N----YTY---YGSVVELASNSDILVVACP  224 (333)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-------C----SEE---ESCHHHHHHTCSEEEECSC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-------C----cee---cCCHHHHHhcCCEEEEecC
Confidence            44568999999 9999999999998887  8999998652110       1    111   1357788999999999864

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.23  E-value=0.0023  Score=54.94  Aligned_cols=109  Identities=13%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHH-------hhhCCCCEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLE-------NALTGMDLV  113 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~-------eal~~ADiV  113 (279)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++.. ...++. .   ..+.. ... .+..       +.+.+.|++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-~---~~~~~D~~~-~~~~~~~~~~~~~~g~id~l   74 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-A---VPLPTDLEK-DDPKGLVKRALEALGGLHVL   74 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-C---EEEECCTTT-SCHHHHHHHHHHHHTSCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-c---EEEecCCch-HHHHHHHHHHHHHcCCCCEE
Confidence            5799999999999999999999997  99999997622 111221 0   00000 000 1222       234589999


Q ss_pred             EEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          114 IIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       114 Iitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  129 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGS  129 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            9999875321   1122   233445544    4555555555544 456666654

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.23  E-value=0.0011  Score=58.28  Aligned_cols=112  Identities=11%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hH----HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV----TADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~----~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      +.++|.|+||+|.+|..++..|++.|.  +|++.|+++..  +.    ..|+.+...   +...  .....+.+...|++
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~Dv~~~~~---v~~~--~~~~~~~~g~iD~l   85 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDVNVSDHFKIDVTNEEE---VKEA--VEKTTKKYGRIDIL   85 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CTTSSEEEECCTTCHHH---HHHH--HHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhccCceeEEEecCCCHHH---HHHH--HHHHHHHcCCCCEE
Confidence            456899999999999999999999998  99999987621  10    011111100   0000  00111223489999


Q ss_pred             EEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          114 IIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       114 Iitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        86 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  140 (269)
T 3vtz_A           86 VNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIAS  140 (269)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            99999753221   111   223455654    4455555555443 456666654

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.22  E-value=0.00072  Score=58.78  Aligned_cols=116  Identities=9%  Similarity=0.050  Sum_probs=65.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +++++.|+||+|.+|..++..|+..|.  +|++.+.+..  .....++.... ..++..+. .-+|   +.+++      
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999987651  11111111111 12233221 1122   22223      


Q ss_pred             -CCCCEEEEccCC--CCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGV--PRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~--~~k-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||.  ... +  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss  146 (264)
T 3i4f_A           83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGF  146 (264)
T ss_dssp             HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEee
Confidence             388999999994  211 1  1122   234555654    4444445555554 455666553

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.22  E-value=0.0015  Score=58.25  Aligned_cols=75  Identities=23%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCchhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L-~D~~~~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      ++++||+|+||+|.+|+.++..+...+-. ||+- +|.+.......|+..... ...+.   .++|+++.++++|+||..
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~---v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVA---LTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCB---CBCCHHHHHHHCSEEEEC
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCce---ecCCHHHHhcCCCEEEEc
Confidence            45789999998899999999888776533 5554 687542111122222111 11222   235777888899999986


Q ss_pred             c
Q 023671          117 A  117 (279)
Q Consensus       117 a  117 (279)
                      .
T Consensus        81 T   81 (272)
T 4f3y_A           81 T   81 (272)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.20  E-value=0.0013  Score=57.78  Aligned_cols=110  Identities=17%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~~  109 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++....  .++..    ..+..+. .-+|   ..+++       ..
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~--~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVERL--KALNL----PNTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHH--HTTCC----TTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHhhc----CCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            45789999999999999999999998  899999875211  11111    0111111 1112   12222       37


Q ss_pred             CCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .|++|++||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS  146 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISS  146 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            89999999975322   1222   234556654    4444566665544 355666654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.19  E-value=0.0016  Score=56.98  Aligned_cols=114  Identities=14%  Similarity=0.244  Sum_probs=65.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+..   ......+...  ..++..+. .-+|.   .+.+      
T Consensus        25 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           25 KRVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDA--GRDFKAYAVDVADFESCERCAEKVLAD  100 (269)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTT--TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            34688999999999999999999998  8999996541   1112222221  12222221 11222   1222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||.....   ..+.   ...+..|+..    .+.+.+.+.+. ..+.|+++|.
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS  162 (269)
T 3gk3_A          101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGS  162 (269)
T ss_dssp             HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence             3799999999975322   1122   2345556544    44455555444 3466666654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.19  E-value=0.0006  Score=59.47  Aligned_cols=116  Identities=12%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             CCcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC----
Q 023671           40 AGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENALT----  108 (279)
Q Consensus        40 ~~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~----  108 (279)
                      +.+++.|+||+  |.+|..++..|+..|.  +|++.|+++. .....++......  +..+. .-+|   ..++++    
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~   82 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGG--ALLFRADVTQDEELDALFAGVKE   82 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--cEEEECCCCCHHHHHHHHHHHHH
Confidence            34589999998  8999999999999997  8999998762 2222233221111  11111 1122   222232    


Q ss_pred             ---CCCEEEEccCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          109 ---GMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       109 ---~ADiVIitag~~~k-----~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                         ..|++|++||....     +  ..+   -...+..|+.....+.+.+.+.- ..+.||++|.
T Consensus        83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence               78999999997532     1  112   22356678777777777666542 1356666654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.19  E-value=0.00051  Score=62.92  Aligned_cols=67  Identities=24%  Similarity=0.353  Sum_probs=49.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|..+|++.......++   .    +..    .++.+.+++||+|+++..
T Consensus       148 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~~~l~~aDvVil~vp  213 (334)
T 2dbq_A          148 VYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AEF----KPLEDLLRESDFVVLAVP  213 (334)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----ccc----CCHHHHHhhCCEEEECCC
Confidence            44679999998 9999999999998887  99999987633111111   1    111    256788999999999875


Q ss_pred             C
Q 023671          119 V  119 (279)
Q Consensus       119 ~  119 (279)
                      .
T Consensus       214 ~  214 (334)
T 2dbq_A          214 L  214 (334)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.18  E-value=0.0024  Score=56.05  Aligned_cols=153  Identities=14%  Similarity=0.120  Sum_probs=84.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------  106 (279)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.+...   .+....++....  .++..+. .-+|.   ++.       
T Consensus        27 ~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           27 NKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999997  888876543   222222333221  1222211 11221   222       


Q ss_pred             hCCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~  179 (279)
                      +...|++|.+||......   .+.   ...+..|+.....+++.+.+.- +.+.||++|...   .       .  .+.|
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~---~-------~--~~~~  170 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQ---V-------G--LLHP  170 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTH---H-------H--HCCT
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChh---h-------c--cCCC
Confidence            237899999999753221   111   2345677776666666555442 346677766422   0       0  1234


Q ss_pred             CCCeeeecchhHHHHHHHHHHHcCCCCCCCcc
Q 023671          180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDV  211 (279)
Q Consensus       180 ~~kViG~t~lds~R~~~~la~~l~v~~~~V~~  211 (279)
                      ..-.++.+..--..+-+.++..++  +..|++
T Consensus       171 ~~~~Y~asKaa~~~l~~~la~e~~--~~gI~v  200 (267)
T 3u5t_A          171 SYGIYAAAKAGVEAMTHVLSKELR--GRDITV  200 (267)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTT--TSCCEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhh--hhCCEE
Confidence            333444433223345566777764  444543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.18  E-value=0.0016  Score=56.81  Aligned_cols=149  Identities=13%  Similarity=0.110  Sum_probs=83.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-----  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++. +.++  ......++....  .++..+. .-+|   .++.+     
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  88888 4443  122223333221  1222211 1122   22222     


Q ss_pred             --CCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCC
Q 023671          108 --TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  177 (279)
Q Consensus       108 --~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~  177 (279)
                        ...|++|++||....  +  ..+.   ...+..|+.....+.+.+.+.- +.+.||++|...           ....+
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~-----------~~~~~  151 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQA-----------GRDGG  151 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH-----------HHHCC
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHH-----------hccCC
Confidence              378999999986421  1  1222   3356778777777777766553 245666665321           01123


Q ss_pred             CCCCCeeeecchhHHHHHHHHHHHcC
Q 023671          178 YDPKKLLGVTMLDVVRANTFVAEVLG  203 (279)
Q Consensus       178 ~~~~kViG~t~lds~R~~~~la~~l~  203 (279)
                      .+..-.++.+..--..+-+.++..++
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~  177 (259)
T 3edm_A          152 GPGALAYATSKGAVMTFTRGLAKEVG  177 (259)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHC
Confidence            33333444433222345566777775

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.18  E-value=0.0061  Score=55.19  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D-~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.| +++
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            35799999999999999999999998  999999 765

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.17  E-value=0.00056  Score=60.54  Aligned_cols=112  Identities=16%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------  107 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|+++.  .....++.     ..+..+. .-+|   .++.+      
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTAK   98 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998762  11122211     1122111 1112   12222      


Q ss_pred             -CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TN  159 (279)
                       ...|++|++||.....   ..+.   ...+..|+.-.    +.+.+.+.+. ..+.||++|.
T Consensus        99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS  160 (277)
T 4dqx_A           99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN-GGGSIINTTS  160 (277)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECc
Confidence             3789999999975321   1121   23455665544    4444444433 3456776654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.16  E-value=0.0018  Score=57.60  Aligned_cols=116  Identities=18%  Similarity=0.163  Sum_probs=72.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHhhhhcccCCCeEEEEe-CCCCH---Hh------
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFL-GQPQL---EN------  105 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~----~g~~~DL~~~~~~~~v~~~~-~~~d~---~e------  105 (279)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++..    ......+...  ..++..+. .-+|.   ++      
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            456899999999999999999999998  9999998631    1111222221  12233221 11221   11      


Q ss_pred             -hhCCCCEEEEccCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          106 -ALTGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       106 -al~~ADiVIitag~~~k~g----~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                       .+...|++|++||.....+    .+   -...+..|+.-...+.+.+.+.- ..+.||++|.
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence             1347899999999753221    12   13456778877777777776654 3456777654

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.0021  Score=59.16  Aligned_cols=89  Identities=18%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..+...|.  +|..+|++....       .    ....   ..++.+.+++||+|+++..
T Consensus       169 l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-------~----~~~~---~~sl~ell~~aDvVil~vP  231 (340)
T 4dgs_A          169 PKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG-------V----DWIA---HQSPVDLARDSDVLAVCVA  231 (340)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT-------S----CCEE---CSSHHHHHHTCSEEEECC-
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc-------c----Ccee---cCCHHHHHhcCCEEEEeCC
Confidence            44679999999 9999999999998887  999999865320       0    0111   2367889999999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHH-HHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIV-RTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~-~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..  + .+        ..++ ++.   +....|++++|+++
T Consensus       232 ~t--~-~t--------~~li~~~~---l~~mk~gailIN~a  258 (340)
T 4dgs_A          232 AS--A-AT--------QNIVDASL---LQALGPEGIVVNVA  258 (340)
T ss_dssp             --------------------CHHH---HHHTTTTCEEEECS
T ss_pred             CC--H-HH--------HHHhhHHH---HhcCCCCCEEEECC
Confidence            21  0 11        1111 222   33345789999885

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.13  E-value=0.0032  Score=54.55  Aligned_cols=118  Identities=17%  Similarity=0.140  Sum_probs=68.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh---
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL---  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~---~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal---  107 (279)
                      +.+++.|+||+|.+|..++..|+.   .|.  +|++.|+++  ......++.......++..+. .-+|.   .+.+   
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            345788999999999999999998   787  999999976  222223333211012233221 11221   1111   


Q ss_pred             -C-----CCC--EEEEccCCCCCCC------Cch---hhHHHhhHHHHHHHHHHHHHhC-----CCceEEEecC
Q 023671          108 -T-----GMD--LVIIPAGVPRKPG------MTR---DDLFNINAGIVRTLCEGIAKCC-----PNATVNLISN  159 (279)
Q Consensus       108 -~-----~AD--iVIitag~~~k~g------~~r---~d~~~~N~~i~~~i~~~I~~~~-----p~a~viv~TN  159 (279)
                       +     ..|  ++|++||.....+      .+.   ...+..|+.-...+.+.+.+.-     ..+.||++|.
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS  156 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcC
Confidence             1     347  9999999753211      222   2356667766666666665442     2356777664

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.13  E-value=0.00087  Score=58.92  Aligned_cols=112  Identities=20%  Similarity=0.245  Sum_probs=65.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-----HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~-----~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.....     ..|+.+...   +...  .....+.+...|++|+
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~~---~~~~--~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAAY---ADGL--PGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHHH---HHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHHH---HHHH--HHHHHHhcCCCCEEEE
Confidence            45899999999999999999999998  9999998752111     112211110   0000  0011233458999999


Q ss_pred             ccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          116 PAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       116 tag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|..
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~  154 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVASC  154 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCH
Confidence            999754211   121   234455654    4445555555543 4566666643

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.18  E-value=7.4e-05  Score=63.62  Aligned_cols=78  Identities=15%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             HHhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCe
Q 023671           14 ISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV   93 (279)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~   93 (279)
                      .++|.+|-.+-++            .+.|||+|||+ |.+|+.++..|...++  +|.++|+++.   ...+...    .
T Consensus         4 ~~~~~~~~~~~~~------------~~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g   61 (201)
T 2yjz_A            4 TCADEFPLTVDSS------------EKQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----G   61 (201)
Confidence            4556666555332            23458999998 9999999999988887  8999987642   1112111    1


Q ss_pred             EEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           94 VRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        94 v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +..   . +..++++++|+||++.
T Consensus        62 ~~~---~-~~~~~~~~aDvVilav   81 (201)
T 2yjz_A           62 AEV---L-CYSEAASRSDVIVLAV   81 (201)
Confidence            111   1 3457789999999986

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.11  E-value=0.00059  Score=58.04  Aligned_cols=104  Identities=19%  Similarity=0.219  Sum_probs=68.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.    .|+.+...   ++      ...+.+...|++|++||..
T Consensus         6 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~~---v~------~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            6 KTVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEKS---VY------HYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHHH---HH------HHHHHHCSEEEEEECCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHHH---HH------HHHHHhCCCCEEEECCCCC
Confidence            45788999999999999999999987  8999987542    34433221   00      1123346789999999965


Q ss_pred             CCC----CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          121 RKP----GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       121 ~k~----g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      ...    ..+.   ...+..|+.-...+.+.+.+.- +.+.|+++|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS  117 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG  117 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence            221    1222   2346678777777777766553 3456666663

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.10  E-value=0.0014  Score=57.59  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=70.2

Q ss_pred             CCcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCC---HHhhh------
Q 023671           40 AGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d---~~eal------  107 (279)
                      +.+++.|+||+  |.+|..++..|+..|.  +|+++|+++. .....++........... ..-+|   ..+.+      
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYE-LDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEE-cCCCCHHHHHHHHHHHHHH
Confidence            34589999998  8999999999999997  9999998762 222233322110111111 11122   12222      


Q ss_pred             -CCCCEEEEccCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k-----~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                       ...|++|++||....     +  ..+   -...+..|+.....+.+.+.+.- +.+.||++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence             367999999997532     1  112   22456678777777777776542 2356666654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.10  E-value=0.00032  Score=64.73  Aligned_cols=72  Identities=25%  Similarity=0.285  Sum_probs=44.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIita  117 (279)
                      .+.|||.|+|| |+||+.++..|... .  +|.+.|++....  ..+.+.  ...+.. ......+.+.++++|+||.++
T Consensus        14 g~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~~--~~~~~~--~~~~~~d~~d~~~l~~~~~~~DvVi~~~   85 (365)
T 3abi_A           14 GRHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNENL--EKVKEF--ATPLKVDASNFDKLVEVMKEFELVIGAL   85 (365)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHHH--HHHTTT--SEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHHH--HHHhcc--CCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence            34579999999 99999999888653 4  899999875211  111111  111111 011123556789999999987


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      +
T Consensus        86 p   86 (365)
T 3abi_A           86 P   86 (365)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.08  E-value=0.0031  Score=57.25  Aligned_cols=134  Identities=18%  Similarity=0.165  Sum_probs=75.6

Q ss_pred             CCcEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh--CCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~-la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal--~~ADiVIit  116 (279)
                      .++||.|||. |-.|.+ +|..|..+|+  +|.++|.++.......|....  ..+.  .+ .+. +.+  .++|+||.+
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v~--~g-~~~-~~l~~~~~d~vV~S   73 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDVY--EG-FDA-AQLDEFKADVYVIG   73 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEEE--ES-CCG-GGGGSCCCSEEEEC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEEE--CC-CCH-HHcCCCCCCEEEEC
Confidence            3569999999 999996 8889999998  999999875222223344322  2232  22 232 345  489999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCC--chHHHHHHHHHHhCCCCCCCeee
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN--STVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd--~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      .|+|...- ......+.+++++.++ +.+.+. ..+..+|-+|-...  ..|.++.++++. .|+++.-++|
T Consensus        74 pgi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~-~g~~~~~~~g  142 (326)
T 3eag_A           74 NVAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEY-AGLAPGFLIG  142 (326)
T ss_dssp             TTCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHH-TTCCCEEECS
T ss_pred             CCcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHH-cCCCceEEec
Confidence            88874321 1111223344444332 222221 23344555665555  555666666654 3554433343

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.08  E-value=0.0062  Score=53.40  Aligned_cols=109  Identities=20%  Similarity=0.211  Sum_probs=63.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l  107 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..      +..+. .-+|   +.+.       +
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  9999998752  111122211      11111 1122   1222       2


Q ss_pred             CCCCEEEEccCCCCCCC----Cch---hhHHHhhHHHHHHH----HHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r---~d~~~~N~~i~~~i----~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|++||.....+    .+.   ...+..|+.-...+    .+.+.+.  .+.||++|.
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS  141 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS  141 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--CCEEEEEcC
Confidence            37899999998753211    111   23455665544444    4444333  356666653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.08  E-value=0.0063  Score=53.78  Aligned_cols=118  Identities=17%  Similarity=0.211  Sum_probs=72.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---------hHHhhhhcccCCCeEEEEe-CCCC---HHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGFL-GQPQ---LENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---------g~~~DL~~~~~~~~v~~~~-~~~d---~~ea  106 (279)
                      +.+++.|+||+|.+|..++..|++.|.  +|++.|+++..         ....++...  ..++..+. .-+|   ..+.
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~   83 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAAA   83 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHH
Confidence            345899999999999999999999998  99999987621         112222221  12333221 1122   1222


Q ss_pred             h-------CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCceEEEecCCC
Q 023671          107 L-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNPV  161 (279)
Q Consensus       107 l-------~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~a~viv~TNPv  161 (279)
                      +       ...|++|++||.....   ..+.   ...+..|+.-...+.+.+.+.-   ..+.|+++|...
T Consensus        84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~  154 (285)
T 3sc4_A           84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPI  154 (285)
T ss_dssp             HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChh
Confidence            2       3899999999975321   1222   2345678776666666665542   346777777544

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.07  E-value=0.0013  Score=58.51  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVII  115 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIi  115 (279)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++|++.  ++..+.++........+.. ....+++.+.++++|+||.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn  194 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT  194 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence            3456899999779999999999999997  799999875  2222333322110011111 1111234566788999999


Q ss_pred             ccCCC
Q 023671          116 PAGVP  120 (279)
Q Consensus       116 tag~~  120 (279)
                      ++|..
T Consensus       195 ~ag~g  199 (287)
T 1lu9_A          195 AGAIG  199 (287)
T ss_dssp             CCCTT
T ss_pred             CCCcc
Confidence            99754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.07  E-value=0.004  Score=55.43  Aligned_cols=117  Identities=12%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             CCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCC---HHhhh------
Q 023671           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQ---LENAL------  107 (279)
Q Consensus        40 ~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d---~~eal------  107 (279)
                      +.+++.|+||+|  .+|..++..|+..|.  +|++.|+++. .....++........... ..-+|   .++.+      
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKLTVP-CDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCEEEE-CCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEEEE-cCCCCHHHHHHHHHHHHHH
Confidence            345899999976  999999999999998  8999999862 122222221111111111 11122   22222      


Q ss_pred             -CCCCEEEEccCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          108 -TGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       108 -~~ADiVIitag~~~k-----~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                       ...|++|++||....     +  ..+.   ...+..|+.....+.+.+...- ..+.|+++|.
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence             378999999997632     1  1222   2356677777777777776653 3466777664

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.05  E-value=0.00097  Score=61.64  Aligned_cols=94  Identities=23%  Similarity=0.307  Sum_probs=61.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|..+|++. ......++.       +..   ..++++.+++||+|+++.
T Consensus       162 l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~  228 (351)
T 3jtm_A          162 LEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVINM  228 (351)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEECS
T ss_pred             ccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEECC
Confidence            45679999998 9999999999988887  899999865 222222211       111   235788999999999987


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....   .++. ++  |    .+.   +....|++++|+++
T Consensus       229 Plt~---~t~~-li--~----~~~---l~~mk~gailIN~a  256 (351)
T 3jtm_A          229 PLTE---KTRG-MF--N----KEL---IGKLKKGVLIVNNA  256 (351)
T ss_dssp             CCCT---TTTT-CB--S----HHH---HHHSCTTEEEEECS
T ss_pred             CCCH---HHHH-hh--c----HHH---HhcCCCCCEEEECc
Confidence            4321   1111 11  1    122   33345889999986

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.05  E-value=0.0035  Score=58.29  Aligned_cols=70  Identities=17%  Similarity=0.307  Sum_probs=45.9

Q ss_pred             cEEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCchhHH-hhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~-~L~~~~~-~~ev~L~D~~~~~g~~-~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +||+|+||+|.+|.-+.. .|...+. ..++.++.... .|.. .++...  ...+..   .++ .+.++++|+||.+.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~-~~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFD-IESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTC-HHHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCC-hhHhccCCEEEECCC
Confidence            589999999999999998 7777763 45888886544 3332 233211  112221   223 255899999999865

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.05  E-value=0.0071  Score=53.06  Aligned_cols=120  Identities=18%  Similarity=0.201  Sum_probs=69.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---------hHHhhhhcccCCCeEEEEe-CCCCH---Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGFL-GQPQL---ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---------g~~~DL~~~~~~~~v~~~~-~~~d~---~ea  106 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++...         ....++...  ..++..+. .-+|.   .+.
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~   80 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRAA   80 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHH
Confidence            346899999999999999999999997  99999987521         111222211  12233221 11221   111


Q ss_pred             -------hCCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHH----HHHHHHHhCCCceEEEecCCCCch
Q 023671          107 -------LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNST  164 (279)
Q Consensus       107 -------l~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~----i~~~I~~~~p~a~viv~TNPvd~~  164 (279)
                             +...|++|++||......   .+.   ...+..|+.-...    +.+.+.+ .+.+.|+++|......
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iv~isS~~~~~  154 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQ-APNPHILTLAPPPSLN  154 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-SSSCEEEECCCCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHh-cCCceEEEECChHhcC
Confidence                   237899999999753221   121   2345566554444    4444443 2456777777655443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.02  E-value=0.0012  Score=60.93  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      ...++|+|||. |.+|..++..+. ..|.  +|+.+|++.. .....++.       +..   .+++++.+++||+|+++
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil~  227 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------AER---VDSLEELARRSDCVSVS  227 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------cEE---eCCHHHHhccCCEEEEe
Confidence            45679999998 999999999998 8887  9999998752 11111111       111   13567888999999998


Q ss_pred             cC
Q 023671          117 AG  118 (279)
Q Consensus       117 ag  118 (279)
                      ..
T Consensus       228 vp  229 (348)
T 2w2k_A          228 VP  229 (348)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.02  E-value=0.00097  Score=60.41  Aligned_cols=66  Identities=24%  Similarity=0.324  Sum_probs=48.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|++.....+.++   .    +..    .++++.+++||+|+++..
T Consensus       140 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~p  205 (307)
T 1wwk_A          140 LEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIHVP  205 (307)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEECCC
T ss_pred             cCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEecC
Confidence            44679999998 9999999999998887  99999987633222111   1    111    146788899999999864

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.99  E-value=0.0042  Score=57.90  Aligned_cols=71  Identities=15%  Similarity=0.286  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCchhHH-hhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~-~L~~~~~-~~ev~L~D~~~~~g~~-~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ++||+|+||+|.||.-+.. .|...++ ..++.++.... .|.. .++...  ...+..   .++ .+.+.++|+||.+.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~-~~~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATS-IDDLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTC-HHHHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCC-hhHhcCCCEEEECC
Confidence            4699999999999999998 7777763 45888886543 2322 233221  112221   223 25578999999986


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      |
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.97  E-value=0.0015  Score=62.71  Aligned_cols=117  Identities=18%  Similarity=0.134  Sum_probs=72.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-----hhHHhhhhcccCCCeEEEEeC-CCC---HHhhhC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG-QPQ---LENALT  108 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-----~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~  108 (279)
                      +.+.++|.|+||+|.+|..++..|+.+|. ..|++++++..     .....++...  ..++..+.+ -+|   +.+.++
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~  299 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLG  299 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHH
Confidence            34567899999999999999999998885 35999998752     1122233332  223433221 123   233445


Q ss_pred             CC------CEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          109 GM------DLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       109 ~A------DiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..      |.||++||+....   ..+.   ...+..|+.....+.+.+.+... ..|+++|
T Consensus       300 ~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~-~~~V~~S  360 (486)
T 2fr1_A          300 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDL-TAFVLFS  360 (486)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCC-SEEEEEE
T ss_pred             HHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCC-CEEEEEc
Confidence            54      9999999976432   1122   23456688888888887776433 4455554

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.96  E-value=0.0015  Score=60.26  Aligned_cols=93  Identities=23%  Similarity=0.264  Sum_probs=61.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..+...|.  +|..+|+.........    .    ...   ..++++.+++||+|+++..
T Consensus       171 l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~----g----~~~---~~~l~ell~~sDvV~l~~P  236 (345)
T 4g2n_A          171 LTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALEE----G----AIY---HDTLDSLLGASDIFLIAAP  236 (345)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHT----T----CEE---CSSHHHHHHTCSEEEECSC
T ss_pred             cCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhhc----C----CeE---eCCHHHHHhhCCEEEEecC
Confidence            34579999998 9999999999998887  9999998652111111    1    111   1367888999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ...   .++ .++  |    ++   .+....|.+++|+++
T Consensus       237 lt~---~T~-~li--~----~~---~l~~mk~gailIN~a  263 (345)
T 4g2n_A          237 GRP---ELK-GFL--D----HD---RIAKIPEGAVVINIS  263 (345)
T ss_dssp             CCG---GGT-TCB--C----HH---HHHHSCTTEEEEECS
T ss_pred             CCH---HHH-HHh--C----HH---HHhhCCCCcEEEECC
Confidence            321   111 111  1    12   233445889999986

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.96  E-value=0.0002  Score=63.43  Aligned_cols=64  Identities=11%  Similarity=0.154  Sum_probs=36.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev-~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +|||+|||+ |.+|..++..|... +  +| .++|+++..  ...+.... ..   .   .+++.++++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~--~~~~~~~~-g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDR--ARNLAEVY-GG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHH--HHHHHHHT-CC---C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHH--HHHHHHHc-CC---c---cCCHHHHHhcCCEEEEeC
Confidence            468999998 99999999888766 4  78 489987521  11121110 01   1   224456688999999986

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.96  E-value=0.002  Score=58.76  Aligned_cols=68  Identities=18%  Similarity=0.200  Sum_probs=48.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...+||+|||. |.+|+.++..+...|.  +|..+|++......  ....    .+..   . ++.+.+++||+|+++..
T Consensus       153 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~~~---~-~l~e~l~~aDvVi~~vp  219 (330)
T 2gcg_A          153 LTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QAEF---V-STPELAAQSDFIVVACS  219 (330)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TCEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Ccee---C-CHHHHHhhCCEEEEeCC
Confidence            44679999999 9999999999988887  89999986521111  1111    1121   2 56778899999999874


Q ss_pred             C
Q 023671          119 V  119 (279)
Q Consensus       119 ~  119 (279)
                      .
T Consensus       220 ~  220 (330)
T 2gcg_A          220 L  220 (330)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.95  E-value=0.00065  Score=61.87  Aligned_cols=93  Identities=20%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..+...|.  +|..+|++....     ..      +.......++++.+++||+|+++..
T Consensus       137 l~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~~------~~~~~~~~~l~ell~~aDiV~l~~P  202 (315)
T 3pp8_A          137 REEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSW-----PG------VESYVGREELRAFLNQTRVLINLLP  202 (315)
T ss_dssp             STTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCC-----TT------CEEEESHHHHHHHHHTCSEEEECCC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhh-----hh------hhhhcccCCHHHHHhhCCEEEEecC
Confidence            34579999998 9999999999998887  999999865210     00      1111112357788999999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..  + .++ .++  |    .   +.+....|++++|+++
T Consensus       203 lt--~-~t~-~li--~----~---~~l~~mk~gailIN~a  229 (315)
T 3pp8_A          203 NT--A-QTV-GII--N----S---ELLDQLPDGAYVLNLA  229 (315)
T ss_dssp             CC--G-GGT-TCB--S----H---HHHTTSCTTEEEEECS
T ss_pred             Cc--h-hhh-hhc--c----H---HHHhhCCCCCEEEECC
Confidence            22  1 111 111  1    1   2233445789999986

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.95  E-value=0.0023  Score=57.35  Aligned_cols=89  Identities=18%  Similarity=0.216  Sum_probs=59.2

Q ss_pred             hhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHh
Q 023671           28 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLEN  105 (279)
Q Consensus        28 ~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~e  105 (279)
                      |.+++.......+.+++.|+|+ |-+|..++..|...|. .+|.++|++.  ++..+.++........+.... .+++.+
T Consensus       114 ~~~~l~~~~~~l~~k~vlVlGa-GG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~-~~~l~~  190 (283)
T 3jyo_A          114 FGRGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIED  190 (283)
T ss_dssp             HHHHHHHHCTTCCCSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC-STTHHH
T ss_pred             HHHHHHHhCcCcCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC-HHHHHH
Confidence            5556654433455679999999 9999999999998874 5899999876  223333443221122343322 236777


Q ss_pred             hhCCCCEEEEccCC
Q 023671          106 ALTGMDLVIIPAGV  119 (279)
Q Consensus       106 al~~ADiVIitag~  119 (279)
                      .++++|+||.+...
T Consensus       191 ~l~~~DiVInaTp~  204 (283)
T 3jyo_A          191 VIAAADGVVNATPM  204 (283)
T ss_dssp             HHHHSSEEEECSST
T ss_pred             HHhcCCEEEECCCC
Confidence            88999999998643

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.94  E-value=0.0013  Score=57.12  Aligned_cols=113  Identities=17%  Similarity=0.141  Sum_probs=64.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhh------hCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA------LTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------l~~A  110 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.. ....++.     ..+..+. .-+|   ..++      +...
T Consensus         9 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~-~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            9 DAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRGE-DVVADLG-----DRARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCH-HHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCchH-HHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            45789999999999999999999998  9999998541 1111121     1112111 1112   1122      2389


Q ss_pred             CEEEEccCCCCCC-------CCc---hhhHHHhhHHHHHHH----HHHHHHh-------CCCceEEEecCCC
Q 023671          111 DLVIIPAGVPRKP-------GMT---RDDLFNINAGIVRTL----CEGIAKC-------CPNATVNLISNPV  161 (279)
Q Consensus       111 DiVIitag~~~k~-------g~~---r~d~~~~N~~i~~~i----~~~I~~~-------~p~a~viv~TNPv  161 (279)
                      |++|++||.....       ..+   -...+..|+.-...+    .+.+.+.       ...+.||++|...
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  152 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVA  152 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchh
Confidence            9999999864210       112   233456676544444    4444432       2346677776544

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.93  E-value=0.007  Score=52.81  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=82.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh---
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL---  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-----~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal---  107 (279)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+..     ......++...  ..++..+. .-+|   ..+.+   
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   85 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFA   85 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            345899999999999999999999998  999988753     11222333322  22333321 1122   22222   


Q ss_pred             ----CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhC
Q 023671          108 ----TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  176 (279)
Q Consensus       108 ----~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~  176 (279)
                          ...|++|++||......   .+.   ...+..|+.....+.+.+.+.- +.+.|++++......            
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~------------  153 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA------------  153 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH------------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc------------
Confidence                37899999999754321   122   2345678777777777766542 346677666432111            


Q ss_pred             CCCCCCeeeecchhHHHHHHHHHHHcC
Q 023671          177 TYDPKKLLGVTMLDVVRANTFVAEVLG  203 (279)
Q Consensus       177 ~~~~~kViG~t~lds~R~~~~la~~l~  203 (279)
                      +.+..-.++.+..--..+-+.++..++
T Consensus       154 ~~~~~~~Y~asKaa~~~l~~~la~e~~  180 (262)
T 3ksu_A          154 YTGFYSTYAGNKAPVEHYTRAASKELM  180 (262)
T ss_dssp             HHCCCCC-----CHHHHHHHHHHHHTT
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            122233455543223345667777774

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.93  E-value=0.001  Score=60.35  Aligned_cols=66  Identities=20%  Similarity=0.400  Sum_probs=48.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..++..+...|.  +|+.+|++.....+.   ...    +..    .++++.+++||+|+++..
T Consensus       140 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~---~~g----~~~----~~l~ell~~aDvVvl~~P  205 (313)
T 2ekl_A          140 LAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAE---KIN----AKA----VSLEELLKNSDVISLHVT  205 (313)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---HTT----CEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHH---hcC----cee----cCHHHHHhhCCEEEEecc
Confidence            45679999998 9999999999998887  999999876322211   111    111    146788899999999864

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.92  E-value=0.0012  Score=56.98  Aligned_cols=106  Identities=17%  Similarity=0.265  Sum_probs=65.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCc-hhH-----HhhhhcccCCCeEEEEeCCCCHHhhh-----
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGV-----TADISHMDTGAVVRGFLGQPQLENAL-----  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~~-~g~-----~~DL~~~~~~~~v~~~~~~~d~~eal-----  107 (279)
                      +++++.|+||+|.+|..++..|+. .+.  .|++.|+++. ...     ..|+.+..            +..+.+     
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~Dv~~~~------------~v~~~~~~~~~   68 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKADLTKQQ------------DITNVLDIIKN   68 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEECCTTCHH------------HHHHHHHHTTT
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEecCcCCHH------------HHHHHHHHHHh
Confidence            345799999999999999999988 666  8899998752 111     11222111            112222     


Q ss_pred             CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      ...|++|++||.....   ..+.   ...+..|+.-...+.+.+.+.- ..+.|+++|.
T Consensus        69 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS  127 (244)
T 4e4y_A           69 VSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGS  127 (244)
T ss_dssp             CCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECC
Confidence            2789999999975321   1222   2356778777777777666543 2356666653

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.91  E-value=0.0033  Score=54.57  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHL   39 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45799999999999999999999997  999999875

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.0032  Score=54.63  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=64.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~  108 (279)
                      +++.|+||+|.+|..++..|+..|....|++.++++.  .....++.     .++..+. .-+|   ..+.       +.
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4788999999999999999988763338888988752  11112221     1122211 1112   1122       23


Q ss_pred             CCCEEEEccCCCCC--C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCCC
Q 023671          109 GMDLVIIPAGVPRK--P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       109 ~ADiVIitag~~~k--~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ..|++|++||....  +  ..+.   ...+..|+.    +.+...+.+.+..  +.|+++|...
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~  139 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDA  139 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSC
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCch
Confidence            78999999997432  1  1222   224455544    4555555556543  6666666543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.89  E-value=0.0017  Score=59.66  Aligned_cols=94  Identities=26%  Similarity=0.324  Sum_probs=61.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|++.....+.++   .    +..    .++++.+++||+|+++..
T Consensus       163 l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~P  228 (335)
T 2g76_A          163 LNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF---G----VQQ----LPLEEIWPLCDFITVHTP  228 (335)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHGGGCSEEEECCC
T ss_pred             CCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----cee----CCHHHHHhcCCEEEEecC
Confidence            45679999998 9999999999988787  99999986532221111   1    111    156788999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...   .++ .++  |    +   +.+....|++++|+++-
T Consensus       229 ~t~---~t~-~li--~----~---~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          229 LLP---STT-GLL--N----D---NTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCT---TTT-TSB--C----H---HHHTTSCTTEEEEECSC
T ss_pred             CCH---HHH-Hhh--C----H---HHHhhCCCCcEEEECCC
Confidence            321   111 111  1    1   22333457889988753

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.88  E-value=0.00059  Score=61.49  Aligned_cols=90  Identities=23%  Similarity=0.264  Sum_probs=60.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|..+|++.....   .        ...   .+++++.+++||+|+++..
T Consensus       120 l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~---~--------~~~---~~~l~ell~~aDiV~l~~P  182 (290)
T 3gvx_A          120 LYGKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQN---V--------DVI---SESPADLFRQSDFVLIAIP  182 (290)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCTT---C--------SEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eecchheeecc-CchhHHHHHHHHhhCc--EEEEEeccccccc---c--------ccc---cCChHHHhhccCeEEEEee
Confidence            34579999998 9999999999998888  9999998652110   0        111   2367888999999999874


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ...   .++. ++  |    .   +.+....|++++|+++
T Consensus       183 ~t~---~t~~-li--~----~---~~l~~mk~gailIN~a  209 (290)
T 3gvx_A          183 LTD---KTRG-MV--N----S---RLLANARKNLTIVNVA  209 (290)
T ss_dssp             CCT---TTTT-CB--S----H---HHHTTCCTTCEEEECS
T ss_pred             ccc---cchh-hh--h----H---HHHhhhhcCceEEEee
Confidence            321   1111 11  1    1   2233445889998875

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.87  E-value=0.004  Score=57.83  Aligned_cols=71  Identities=21%  Similarity=0.459  Sum_probs=47.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++||+|+||+|.+|..+...|...++ ..|+.++...+..|+...+..    ..+.... . + .+++.++|+||.+.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~----~~~~~~~-~-~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD----QDITIEE-T-T-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETT----EEEEEEE-C-C-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecC----CCceEee-C-C-HHHhcCCCEEEECCC
Confidence            46999999999999999998887643 458888876544444333221    1222211 1 2 245789999999875

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.86  E-value=0.0054  Score=58.14  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=62.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|+|. |.+|..+|..|...|.  +|+.+|+++... .+.+.   .  .  ..    .++++++++||+|+.+.
T Consensus       209 L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~~---G--~--~~----~sL~eal~~ADVVilt~  274 (436)
T 3h9u_A          209 IAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAAME---G--Y--QV----LLVEDVVEEAHIFVTTT  274 (436)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---T--C--EE----CCHHHHTTTCSEEEECS
T ss_pred             ccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHHHh---C--C--ee----cCHHHHHhhCCEEEECC
Confidence            34679999998 9999999999998887  899999976211 11111   1  1  11    25789999999999876


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      +...--+.                 +.+....|++++++++++.
T Consensus       275 gt~~iI~~-----------------e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          275 GNDDIITS-----------------EHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             SCSCSBCT-----------------TTGGGCCTTEEEEECSSSG
T ss_pred             CCcCccCH-----------------HHHhhcCCCcEEEEeCCCC
Confidence            53211110                 1123345788999988764

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.85  E-value=0.0039  Score=57.61  Aligned_cols=96  Identities=20%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCchhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMD----TGAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-----~~~ev~L~D~~~~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~AD  111 (279)
                      ++||+|+||+|.+|..+...|...+     . -||+++-.....|+..+-.|..    ....+..    .+ .++++++|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~-~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~----~~-~~~~~~~D   82 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGR-LRIGALTAATSAGSTLGEHHPHLTPLAHRVVEP----TE-AAVLGGHD   82 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTS-EEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE----CC-HHHHTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCcc-EEEEEEECCCcCCCchhhhcccccccceeeecc----CC-HHHhcCCC
Confidence            4699999999999999999988776     3 3677764322222222211111    0111221    13 35688999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      +||.+.|..    .            .+++++.+ +.  ..++|-.|.|-
T Consensus        83 vVf~alg~~----~------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           83 AVFLALPHG----H------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             EEEECCTTS----C------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             EEEECCCCc----c------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            999987532    1            33555555 32  35777778775

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.84  E-value=0.0091  Score=53.93  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=65.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC---------C--chhHHhhhhcccCCCeEEE-EeCCCCHHh---
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---------N--TPGVTADISHMDTGAVVRG-FLGQPQLEN---  105 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~---------~--~~g~~~DL~~~~~~~~v~~-~~~~~d~~e---  105 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+.         .  ......++....  ..... .....+..+   
T Consensus         9 gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~~~~~D~~~~~~~~~~~~   84 (319)
T 1gz6_A            9 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGEKLVK   84 (319)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhC--CeEEEeCCCHHHHHHHHH
Confidence            45899999999999999999999997  99998863         1  111222333211  11111 111111112   


Q ss_pred             ----hhCCCCEEEEccCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671          106 ----ALTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       106 ----al~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T  158 (279)
                          .+...|++|+.||......   .+.   ...+..|+..    .+.+.+.+++.. .+.||++|
T Consensus        85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vs  150 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTA  150 (319)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEC
Confidence                2347899999999754321   122   2345556554    455555555544 35566654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.83  E-value=0.02  Score=50.25  Aligned_cols=115  Identities=16%  Similarity=0.210  Sum_probs=70.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhh--hCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA--LTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea--l~~ADiVI  114 (279)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|++..+.....+....  .+...+. .-+|   .++.  .-.-|++|
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            44677889999999999999999998  999999976432222233221  1222111 1112   1111  13579999


Q ss_pred             EccCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          115 IPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       115 itag~~~k~g---~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ..||......   .+..   ..+..|+    -..+..++.+.+....+.||++|.
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            9999754321   2222   2344454    456677777777766677777764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.83  E-value=0.0017  Score=59.96  Aligned_cols=67  Identities=25%  Similarity=0.394  Sum_probs=49.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..+...|.  +|..+|+........++.       +..   ..++++.+++||+|+++..
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-------Cee---cCCHHHHHhcCCEEEEcCC
Confidence            45679999998 9999999999998887  999999865322222111       111   1256788999999999864

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.81  E-value=0.015  Score=50.82  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++
T Consensus        30 ~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           30 GASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            45789999999999999999999998  999999976

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.80  E-value=0.0044  Score=54.15  Aligned_cols=115  Identities=15%  Similarity=0.118  Sum_probs=67.1

Q ss_pred             CCcEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE-eCCCC---HHhhhC-----
Q 023671           40 AGFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQ---LENALT-----  108 (279)
Q Consensus        40 ~~~KI~IIGA--~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~-~~~~d---~~eal~-----  108 (279)
                      +.+++.|+||  +|.+|..++..|+..|.  +|++.|+++... ..++.+.. ..++..+ ..-+|   ..+.++     
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEA   81 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHH
Confidence            3457999998  89999999999999997  899999876211 01111110 0111111 11122   222222     


Q ss_pred             -----CCCEEEEccCCCCC------C--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671          109 -----GMDLVIIPAGVPRK------P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (279)
Q Consensus       109 -----~ADiVIitag~~~k------~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T  158 (279)
                           ..|++|++||....      +  ..+.   ...+..|+.....+++.+.+.- +.+.|+++|
T Consensus        82 ~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           82 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence                 78999999997531      1  1122   2345677776666777666542 235666665

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.79  E-value=0.0018  Score=58.97  Aligned_cols=67  Identities=19%  Similarity=0.206  Sum_probs=49.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~-~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|+ +.....+.++.       +..   .+++++.+++||+|+++.
T Consensus       144 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil~~  210 (320)
T 1gdh_A          144 LDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ-------ATF---HDSLDSLLSVSQFFSLNA  210 (320)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhcC-------cEE---cCCHHHHHhhCCEEEEec
Confidence            45679999998 9999999999988886  9999998 76322222111       111   125678899999999986


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      .
T Consensus       211 p  211 (320)
T 1gdh_A          211 P  211 (320)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.79  E-value=0.0028  Score=56.12  Aligned_cols=71  Identities=11%  Similarity=0.201  Sum_probs=50.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+.+||+|||+ |.+|..++..|...|.  +|.++|++..+  +.++....   .+..   .+++.+.++++|+||.+..
T Consensus       127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~--~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp  195 (275)
T 2hk9_A          127 VKEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEK--AIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTS  195 (275)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHH--HHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSS
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHH--HHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCC
Confidence            34579999998 9999999999998886  99999987521  22222211   1232   1256678899999999975


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      .+
T Consensus       196 ~~  197 (275)
T 2hk9_A          196 VG  197 (275)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.77  E-value=0.0067  Score=54.94  Aligned_cols=116  Identities=17%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcc--cCCCeEEEEe-CCCC---HHhhhC---
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHM--DTGAVVRGFL-GQPQ---LENALT---  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~--~~~~~v~~~~-~~~d---~~eal~---  108 (279)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++.   ......++.+.  .....+..+. .-+|   ..++++   
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            35789999999999999999999998  899887753   11111111110  0012233221 1122   223333   


Q ss_pred             ----CCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHH----HHHHHHhCCCceEEEecC
Q 023671          109 ----GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  159 (279)
Q Consensus       109 ----~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i----~~~I~~~~p~a~viv~TN  159 (279)
                          +.|++|++||.....   ..+.   ...+..|+.....+    .+.+++.. .+.||++|.
T Consensus        83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~-~g~iV~isS  146 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK-HGLLIWISS  146 (324)
T ss_dssp             HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEec
Confidence                899999999964321   1121   23456665544444    44445544 455666553

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.77  E-value=0.0024  Score=59.38  Aligned_cols=98  Identities=21%  Similarity=0.325  Sum_probs=62.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|..+|.........+.   .    +..    .++++.++.||+|+++..
T Consensus       174 l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~P  239 (365)
T 4hy3_A          174 IAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN---G----VEP----ASLEDVLTKSDFIFVVAA  239 (365)
T ss_dssp             SSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHHHSCSEEEECSC
T ss_pred             cCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc---C----eee----CCHHHHHhcCCEEEEcCc
Confidence            34679999998 9999999999887777  99999986422211111   1    111    257888999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec--CCCCc
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  163 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T--NPvd~  163 (279)
                      ...   .++ .++  |    .   +.+....|++++|+++  .++|.
T Consensus       240 lt~---~T~-~li--~----~---~~l~~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          240 VTS---ENK-RFL--G----A---EAFSSMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             SSC---C----CC--C----H---HHHHTSCTTCEEEECSCGGGSCH
T ss_pred             CCH---HHH-hhc--C----H---HHHhcCCCCcEEEECcCCchhCH
Confidence            321   111 111  1    1   2334445899999985  44443

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.75  E-value=0.0017  Score=58.86  Aligned_cols=61  Identities=21%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..++..+...|.  +|+.+|++.....      .      .    ..++++.+++||+|+++..
T Consensus       142 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------~------~----~~~l~ell~~aDvV~l~~p  202 (311)
T 2cuk_A          142 LQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------Y------P----FLSLEELLKEADVVSLHTP  202 (311)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------S------C----BCCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------c------c----cCCHHHHHhhCCEEEEeCC
Confidence            45679999998 9999999999988887  9999998652111      0      0    1256788999999999863

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.75  E-value=0.014  Score=49.97  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----------CCCHHhhhCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----------QPQLENALTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----------~~d~~eal~~A  110 (279)
                      .+++.|+||+|.+|..++..|+. +.  .|+++|+++...  .++.+..   .+..+..          ..+..+.+...
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~--~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            5 KKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHL--AALAEIE---GVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHH--HHHHTST---TEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHhhc---CCcceecccchHHHHHHHHHHHHhcCCC
Confidence            45799999999999999999876 65  899999875211  1111110   1111110          00111224478


Q ss_pred             CEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671          111 DLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       111 DiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      |++|++||......   .+.   ...+..|+.    +.+.+.+.+++..  +.||++|..
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~  134 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSG  134 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC--
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCc
Confidence            99999998753221   111   223455554    4566666665543  566666543

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.72  E-value=0.0054  Score=54.10  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSA   39 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            45899999999999999999999998  999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.72  E-value=0.0088  Score=53.34  Aligned_cols=97  Identities=21%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+.++|+|||+ |.+|..++..+...|.  +|..+|++....  ..+...  ....  .. ..++++.++++|+|+.+..
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~--g~~~--~~-~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLL--ARIAEM--GMEP--FH-ISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHT--TSEE--EE-GGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHC--CCee--cC-hhhHHHHhcCCCEEEECCC
Confidence            45679999998 9999999999998887  999999865211  111111  1111  11 1356778999999999874


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-CCCCc
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNS  163 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-NPvd~  163 (279)
                      .    +.     +  |.    +   .+....|.+++++++ +|.++
T Consensus       223 ~----~~-----i--~~----~---~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          223 A----LV-----V--TA----N---VLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             S----CC-----B--CH----H---HHHHSCTTCEEEECSSTTCSB
T ss_pred             h----HH-----h--CH----H---HHHhcCCCCEEEEecCCCCCC
Confidence            2    11     1  11    1   223335788999987 77664

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.71  E-value=0.0033  Score=54.07  Aligned_cols=116  Identities=18%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHhhhhcccCCCeEEEEe-CCCCH---HhhhC-----
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT-----  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~-~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal~-----  108 (279)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+.+ +  ......++....  ..+..+. ..+|.   ++.++     
T Consensus         7 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            7 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999997  88886543 3  222233343321  2222221 11221   11111     


Q ss_pred             --------CCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCC
Q 023671          109 --------GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  160 (279)
Q Consensus       109 --------~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNP  160 (279)
                              ..|++|++||......   .+.   ...+..|+.....+.+.+.+.- +.+.|+++|..
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~  149 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA  149 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCCh
Confidence                    2899999999753221   111   2345667666666666665442 34567776653

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.71  E-value=0.01  Score=55.07  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=44.4

Q ss_pred             CcEEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCchhHHhh-hhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~-~L~~~~~-~~ev~L~D~~~~~g~~~D-L~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |+||+|+||+|.+|..+.. .|...++ ..+|+++-.+. .|.... +..  ....+..   ..+. +.++++|+||.+.
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~v~~~~g--~~i~~~~---~~~~-~~~~~~DvVf~a~   73 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQAAPSFGG--TTGTLQD---AFDL-EALKALDIIVTCQ   73 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCGGGT--CCCBCEE---TTCH-HHHHTCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCCccccCC--CceEEEe---cCCh-HHhcCCCEEEECC
Confidence            4699999999999999998 5555543 45888886653 333221 111  1112221   2233 4478999999987


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      |
T Consensus        74 g   74 (367)
T 1t4b_A           74 G   74 (367)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.69  E-value=0.0072  Score=53.91  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.++|.|+|+ |.||...+..|+..|.  +|.++|.+.
T Consensus        12 ~~k~VLVVGg-G~va~rka~~Ll~~Ga--~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--EEEEEcCCC
Confidence            4569999999 9999999999999997  899999754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.69  E-value=0.008  Score=52.02  Aligned_cols=71  Identities=11%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +.++|.|||+ |.||...+..|+..|.  +|.++|.+.. ....++....   .+.......+ ++.+.++|+||.+.+
T Consensus        30 ~gk~VLVVGg-G~va~~ka~~Ll~~GA--~VtVvap~~~-~~l~~l~~~~---~i~~i~~~~~-~~dL~~adLVIaAT~  100 (223)
T 3dfz_A           30 KGRSVLVVGG-GTIATRRIKGFLQEGA--AITVVAPTVS-AEINEWEAKG---QLRVKRKKVG-EEDLLNVFFIVVATN  100 (223)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHGGGCC--CEEEECSSCC-HHHHHHHHTT---SCEEECSCCC-GGGSSSCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCCC-HHHHHHHHcC---CcEEEECCCC-HhHhCCCCEEEECCC
Confidence            3468999999 9999999999998886  8999987542 1223333221   2332222223 467899999998754

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.68  E-value=0.015  Score=50.29  Aligned_cols=116  Identities=12%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             CCcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhh----
Q 023671           40 AGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENA----  106 (279)
Q Consensus        40 ~~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea----  106 (279)
                      +.+++.|+||+  |.+|..++..|+..|.  +|+++|.+..   .....++.... ..++..+. .-+|   .++.    
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHH
Confidence            34589999998  7999999999999998  9999988762   22233333211 11222211 1112   1122    


Q ss_pred             ---hCCCCEEEEccCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          107 ---LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 ---l~~ADiVIitag~~~k~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                         +...|++|++||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.|++++.
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  160 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITAS  160 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEcc
Confidence               236799999999754321   122   234555644    4455555556554 355555554

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.66  E-value=0.002  Score=62.60  Aligned_cols=66  Identities=23%  Similarity=0.318  Sum_probs=49.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..|...|.  +|+.+|.+.....+.++.       +..   . ++.+.+++||+|+++..
T Consensus       140 l~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~---~-~l~e~~~~aDvV~l~~P  205 (529)
T 1ygy_A          140 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL---L-SLDDLLARADFISVHLP  205 (529)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE---C-CHHHHHHHCSEEEECCC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE---c-CHHHHHhcCCEEEECCC
Confidence            44579999998 9999999999998887  999999875322222221       111   1 46788999999999874

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.65  E-value=0.14  Score=44.63  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=65.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC----------HHhhhCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ----------LENALTGM  110 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d----------~~eal~~A  110 (279)
                      ++|.|+||++-+|..++..|+..|.  +|++.|+++..  ..++....  .++..+. .-+|          ..+.+...
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~--~~~~~~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKR--SADFAKER--PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHTTC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc--CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999999999999999999998  99999998621  11222211  1111111 1112          12335689


Q ss_pred             CEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          111 DLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       111 DiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++|..||.....   ..+..   ..+..|+.    ..+...+.+.+.  .+.||+++.
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS  133 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIAS  133 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEee
Confidence            9999999875432   12222   23445543    455666666653  366666653

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.65  E-value=0.0061  Score=58.92  Aligned_cols=118  Identities=18%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-----hhHHhhhhcccCCCeEEEEeC-CCC---HHhhhC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG-QPQ---LENALT  108 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-----~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~  108 (279)
                      +.+.++|.|+||+|.+|..++..|+..|. ..|++++++..     .....++...  ..++..+.+ -+|   +.+.++
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~  332 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVT  332 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHh
Confidence            34567999999999999999999988885 36899988752     1122333322  233443221 223   233343


Q ss_pred             --CCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          109 --GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       109 --~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                        ..|+||++||+.....   .+.   ...+..|+.....+.+.+....+...|+++|
T Consensus       333 ~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~S  390 (511)
T 2z5l_A          333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFS  390 (511)
T ss_dssp             HSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEE
T ss_pred             cCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEe
Confidence              3899999999764321   121   2345667777777776665431223444444

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.64  E-value=0.01  Score=56.15  Aligned_cols=91  Identities=15%  Similarity=0.199  Sum_probs=61.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..++|+|+|. |.+|..++..+...|.  +|+.+|+++... .+..  ..     ...    .++++++++||+||.+.|
T Consensus       219 ~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~~--~G-----~~v----~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          219 GGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQACM--DG-----FRL----VKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH--TT-----CEE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHHH--cC-----CEe----ccHHHHHhcCCEEEECCC
Confidence            4579999999 9999999999998887  899999876211 1111  11     111    247889999999999754


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      .+   +.-       |    .+.   +....|++++++++.+-
T Consensus       285 t~---~lI-------~----~e~---l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          285 NK---NVV-------T----REH---LDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             CS---CSB-------C----HHH---HHHSCTTEEEEECSSTT
T ss_pred             Cc---ccC-------C----HHH---HHhcCCCcEEEEecCCC
Confidence            32   110       1    122   22335789999998764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.63  E-value=0.0036  Score=58.91  Aligned_cols=125  Identities=20%  Similarity=0.223  Sum_probs=74.8

Q ss_pred             HHHhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCC
Q 023671           13 RISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTG   91 (279)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~   91 (279)
                      -+.|+.++-.+      -.+-+..+..++.||+|||+ |.+|...+..+...|.  +|..+|++.. ...+.++......
T Consensus       168 ~~aa~~l~~~~------~~l~t~~g~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~  238 (405)
T 4dio_A          168 IDAAYEYDRAL------PMMMTAAGTVPAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIA  238 (405)
T ss_dssp             HHHHHHCSSCS------SCEEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECC
T ss_pred             HHHHHHhHhhh------chhhccCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceee
Confidence            35567776432      14445555667889999999 9999999999988887  8999999872 2222222110000


Q ss_pred             Ce---------EEEEeC----------CCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc
Q 023671           92 AV---------VRGFLG----------QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA  152 (279)
Q Consensus        92 ~~---------v~~~~~----------~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a  152 (279)
                      ..         ...+..          ..++.+++++||+||.++..|.+...   .++      .++.++   .-.|.+
T Consensus       239 ~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap---~Lv------t~emv~---~Mk~Gs  306 (405)
T 4dio_A          239 VEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAP---RLV------TREMLD---SMKPGS  306 (405)
T ss_dssp             CCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCC---CCB------CHHHHT---TSCTTC
T ss_pred             cccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCC---EEe------cHHHHh---cCCCCC
Confidence            00         000110          12457788999999999877643221   111      123333   334888


Q ss_pred             eEEEec
Q 023671          153 TVNLIS  158 (279)
Q Consensus       153 ~viv~T  158 (279)
                      +|+.++
T Consensus       307 VIVDvA  312 (405)
T 4dio_A          307 VVVDLA  312 (405)
T ss_dssp             EEEETT
T ss_pred             EEEEEe
Confidence            888876

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.62  E-value=0.0018  Score=59.13  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=60.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|..+|++.....  .+      .....   ..++++.+++||+|+++..
T Consensus       135 l~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~--~~------~~~~~---~~~l~ell~~aDvV~l~lP  200 (324)
T 3evt_A          135 LTGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPAD--HF------HETVA---FTATADALATANFIVNALP  200 (324)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCCT--TC------SEEEE---GGGCHHHHHHCSEEEECCC
T ss_pred             ccCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchhH--hH------hhccc---cCCHHHHHhhCCEEEEcCC
Confidence            34579999999 9999999999998888  9999998652100  00      11111   2356788999999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..  + .++ .++  |    .   +.+....|.+++|+++
T Consensus       201 lt--~-~t~-~li--~----~---~~l~~mk~gailIN~a  227 (324)
T 3evt_A          201 LT--P-TTH-HLF--S----T---ELFQQTKQQPMLINIG  227 (324)
T ss_dssp             CC--G-GGT-TCB--S----H---HHHHTCCSCCEEEECS
T ss_pred             Cc--h-HHH-Hhc--C----H---HHHhcCCCCCEEEEcC
Confidence            22  1 111 111  1    1   2234445889999986

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.61  E-value=0.0025  Score=57.56  Aligned_cols=90  Identities=21%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..+...|.  +|+.+|++..    .+    ..    .   ...++++.+++||+|+++..
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~----~~----~~----~---~~~~l~ell~~aDvV~l~~P  183 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK----EG----PW----R---FTNSLEEALREARAAVCALP  183 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC----CS----SS----C---CBSCSHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc----cc----Cc----c---cCCCHHHHHhhCCEEEEeCc
Confidence            45679999998 9999999999998887  9999998643    11    10    0   11246788999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...   .++ .++  |    .   +.+....|++++|+++.
T Consensus       184 ~~~---~t~-~~i--~----~---~~l~~mk~gailin~sr  211 (303)
T 1qp8_A          184 LNK---HTR-GLV--K----Y---QHLALMAEDAVFVNVGR  211 (303)
T ss_dssp             CST---TTT-TCB--C----H---HHHTTSCTTCEEEECSC
T ss_pred             Cch---HHH-HHh--C----H---HHHhhCCCCCEEEECCC
Confidence            321   111 111  1    1   22333457889998863

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.61  E-value=0.011  Score=51.96  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC----------HHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d----------~~ea  106 (279)
                      +.+.+.|+||++-+|..++..|++.|.  +|++.|+++  +...+.++....  .++..+.. -+|          ..+.
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            345778889999999999999999998  999999986  233333444321  12222110 111          1122


Q ss_pred             hCCCCEEEEccCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecCC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +-.-|++|..||......   .+..   ..+..|+    ...+..++.+.+....+.||++|.-
T Consensus        84 ~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~  147 (255)
T 4g81_D           84 GIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL  147 (255)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeeh
Confidence            457899999999754321   2222   2344453    4667778888766666778887643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.61  E-value=0.0058  Score=53.45  Aligned_cols=74  Identities=18%  Similarity=0.259  Sum_probs=48.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-------------------chhH--HhhhhcccCCCeEEEEeCC-
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------------------TPGV--TADISHMDTGAVVRGFLGQ-  100 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-------------------~~g~--~~DL~~~~~~~~v~~~~~~-  100 (279)
                      ||.|+|+ |.+|+.++..|+..|. .+|.++|.+.                   .+..  +..+........+..+... 
T Consensus        33 ~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  110 (249)
T 1jw9_B           33 RVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL  110 (249)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             eEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            8999999 9999999999998884 6999999875                   1111  1223322222344443211 


Q ss_pred             --CCHHhhhCCCCEEEEccC
Q 023671          101 --PQLENALTGMDLVIIPAG  118 (279)
Q Consensus       101 --~d~~eal~~ADiVIitag  118 (279)
                        .++.+.++++|+||.+.+
T Consensus       111 ~~~~~~~~~~~~DvVi~~~d  130 (249)
T 1jw9_B          111 DDAELAALIAEHDLVLDCTD  130 (249)
T ss_dssp             CHHHHHHHHHTSSEEEECCS
T ss_pred             CHhHHHHHHhCCCEEEEeCC
Confidence              123456789999999863

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.59  E-value=0.0041  Score=56.17  Aligned_cols=71  Identities=17%  Similarity=0.239  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..++|+|||+ |.+|..++..|... + ..+|.++|+++..  +.++...... .+..   .++++++++++|+||++..
T Consensus       134 ~~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~--~~~l~~~~~~-~~~~---~~~~~e~v~~aDiVi~atp  205 (312)
T 2i99_A          134 SSEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKEN--AEKFADTVQG-EVRV---CSSVQEAVAGADVIITVTL  205 (312)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHH--HHHHHHHSSS-CCEE---CSSHHHHHTTCSEEEECCC
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHH--HHHHHHHhhC-CeEE---eCCHHHHHhcCCEEEEEeC
Confidence            3569999998 99999999888765 5 4699999987521  1122211000 1222   2467788999999999853

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.59  E-value=0.018  Score=52.75  Aligned_cols=96  Identities=16%  Similarity=0.282  Sum_probs=57.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhh-----hhcccCCCeEEEEeCCCCHHhhh-CCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTAD-----ISHMDTGAVVRGFLGQPQLENAL-TGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~D-----L~~~~~~~~v~~~~~~~d~~eal-~~AD  111 (279)
                      |+||+|+||+|.+|..+...|...+.+ |+..+...+   ..|+...     +... ....+...   .+. +++ +++|
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~-~~~~v~~~---~~~-~~~~~~~D   77 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGI-VELPLQPM---SDI-SEFSPGVD   77 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTT-CCCBEEEE---SSG-GGTCTTCS
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCc-cceeEecc---CCH-HHHhcCCC
Confidence            579999999999999999988876543 777665433   3333221     1111 01122211   032 446 8999


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +||.+.+                -...+++++.+.+.  .+++|-.|.+
T Consensus        78 vvf~a~p----------------~~~s~~~~~~~~~~--g~~vIDlSa~  108 (337)
T 3dr3_A           78 VVFLATA----------------HEVSHDLAPQFLEA--GCVVFDLSGA  108 (337)
T ss_dssp             EEEECSC----------------HHHHHHHHHHHHHT--TCEEEECSST
T ss_pred             EEEECCC----------------hHHHHHHHHHHHHC--CCEEEEcCCc
Confidence            9999864                12345566665543  4566666665

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.58  E-value=0.0064  Score=56.02  Aligned_cols=73  Identities=19%  Similarity=0.345  Sum_probs=49.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .++|+|||+ |.+|...+..+.....+.+|.++|++.  ++..+.++... ....+..   .+++++++++||+||++..
T Consensus       129 ~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aTp  203 (350)
T 1x7d_A          129 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVTA  203 (350)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEecc
Confidence            458999998 999999887765433356999999976  23333333221 0122332   2467889999999999854

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.57  E-value=0.0012  Score=61.90  Aligned_cols=76  Identities=22%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-C---CCCHHhhhCC--CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-G---QPQLENALTG--MD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~-~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~---~~d~~eal~~--AD  111 (279)
                      |+||.|||| |.+|+.++..|++.+.. .+|++.|++.  +...+.++.... ...+.... .   ..++.+.+++  +|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            469999999 99999999999988743 6999999986  222333333211 01122111 1   1234555666  89


Q ss_pred             EEEEccC
Q 023671          112 LVIIPAG  118 (279)
Q Consensus       112 iVIitag  118 (279)
                      +||++++
T Consensus        79 vVin~ag   85 (405)
T 4ina_A           79 IVLNIAL   85 (405)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999986

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.57  E-value=0.006  Score=56.95  Aligned_cols=126  Identities=23%  Similarity=0.230  Sum_probs=74.7

Q ss_pred             HHhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCC
Q 023671           14 ISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGA   92 (279)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~   92 (279)
                      +.++.++-.+      -.+-+..+..++.||+|||+ |.+|...+..+...|.  +|..+|++.. ...+.++.-.....
T Consensus       163 ~aa~~l~~~~------~~l~~~~~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l  233 (381)
T 3p2y_A          163 LGASLSTRFV------PMLTTAAGTVKPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDL  233 (381)
T ss_dssp             HHHHHCSSCS------SCEECSSCEECCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCC
T ss_pred             HHHHHhhhhh------hhhhcccCCcCCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEec
Confidence            4556655433      23455556677889999999 9999999998888786  8999999862 22222221100000


Q ss_pred             e-----EEEE----------eCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671           93 V-----VRGF----------LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus        93 ~-----v~~~----------~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~  157 (279)
                      .     ...+          ....++.+.+++||+||.++..|.+....   ++      .++.++.+   .|.++|+.+
T Consensus       234 ~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~---Lv------t~emv~~M---kpGsVIVDv  301 (381)
T 3p2y_A          234 GIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGRPAPR---LV------TAAAATGM---QPGSVVVDL  301 (381)
T ss_dssp             C-------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCC---CB------CHHHHHTS---CTTCEEEET
T ss_pred             cccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCcccce---ee------cHHHHhcC---CCCcEEEEE
Confidence            0     0000          00124667899999999998766432110   11      13333333   478888887


Q ss_pred             cCC
Q 023671          158 SNP  160 (279)
Q Consensus       158 TNP  160 (279)
                      +-+
T Consensus       302 A~d  304 (381)
T 3p2y_A          302 AGE  304 (381)
T ss_dssp             TGG
T ss_pred             eCC
Confidence            633

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.56  E-value=0.0018  Score=59.77  Aligned_cols=99  Identities=16%  Similarity=0.165  Sum_probs=63.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|+......   .....    ++.   .+++++.+++||+|+++..
T Consensus       158 l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~---~~~~g----~~~---~~~l~ell~~aDiV~l~~P  224 (352)
T 3gg9_A          158 LKGQTLGIFGY-GKIGQLVAGYGRAFGM--NVLVWGRENSKER---ARADG----FAV---AESKDALFEQSDVLSVHLR  224 (352)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSHHHHHH---HHHTT----CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEECCCCCHHH---HHhcC----ceE---eCCHHHHHhhCCEEEEecc
Confidence            34679999998 9999999999998888  9999997531111   11111    121   2367888999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec--CCCCc
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  163 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T--NPvd~  163 (279)
                      ...   .++. ++  |.       +.+....|++++|+++  .++|.
T Consensus       225 lt~---~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vd~  258 (352)
T 3gg9_A          225 LND---ETRS-II--TV-------ADLTRMKPTALFVNTSRAELVEE  258 (352)
T ss_dssp             CST---TTTT-CB--CH-------HHHTTSCTTCEEEECSCGGGBCT
T ss_pred             CcH---HHHH-hh--CH-------HHHhhCCCCcEEEECCCchhhcH
Confidence            321   1111 11  11       1233445889999986  34443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.54  E-value=0.0036  Score=57.23  Aligned_cols=67  Identities=25%  Similarity=0.331  Sum_probs=49.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..+...|.  +|..+|++.......+.       .+..    .++++.+++||+|+++..
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL-------KARY----MDIDELLEKSDIVILALP  209 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH-------TEEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Ccee----cCHHHHHhhCCEEEEcCC
Confidence            45679999998 9999999999988887  99999987632211111       1221    156778899999999874


Q ss_pred             C
Q 023671          119 V  119 (279)
Q Consensus       119 ~  119 (279)
                      .
T Consensus       210 ~  210 (333)
T 2d0i_A          210 L  210 (333)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.50  E-value=0.0029  Score=57.87  Aligned_cols=91  Identities=20%  Similarity=0.193  Sum_probs=59.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.+|..+...|.  +|+.+|+.....    ...   .  .. .   .++++.+++||+|+++..
T Consensus       143 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~----~~~---~--~~-~---~~l~ell~~aDvV~~~~P  206 (333)
T 1dxy_A          143 LGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG----DHP---D--FD-Y---VSLEDLFKQSDVIDLHVP  206 (333)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS----CCT---T--CE-E---CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCcchh----hHh---c--cc-c---CCHHHHHhcCCEEEEcCC
Confidence            34569999998 9999999999988887  999999865211    111   1  11 1   156788999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ...   .++ .++  |    .+.   +....|.+++|+++
T Consensus       207 ~~~---~t~-~li--~----~~~---l~~mk~ga~lIn~s  233 (333)
T 1dxy_A          207 GIE---QNT-HII--N----EAA---FNLMKPGAIVINTA  233 (333)
T ss_dssp             CCG---GGT-TSB--C----HHH---HHHSCTTEEEEECS
T ss_pred             Cch---hHH-HHh--C----HHH---HhhCCCCcEEEECC
Confidence            321   111 111  1    122   33345788999885

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.48  E-value=0.04  Score=48.35  Aligned_cols=114  Identities=16%  Similarity=0.241  Sum_probs=71.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal  107 (279)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++....  .++..+. .-+|.          .+.+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788899999999999999999998  999999987  333344454332  1222211 11121          2234


Q ss_pred             CCCCEEEEccCCCC--CC--CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPR--KP--GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~--k~--g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      -.-|++|..||...  .+  ..+..   ..+..|    ....+..++.+.+.. .+.||+++.
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS  144 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTAS  144 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence            58999999999643  22  12222   234444    456777888887765 466777653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.46  E-value=0.01  Score=56.46  Aligned_cols=72  Identities=15%  Similarity=0.087  Sum_probs=47.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCC---CHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~---d~~eal~~ADiVIit  116 (279)
                      +++|.|+|+ |++|..++..|...|.  +|+++|++..+  +.++....  ..+.... ...   ++.++++++|+||++
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~~--a~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLES--AKKLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHHH--HHHTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHHH--HHHHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            468999996 9999999999998886  89999987521  22222111  1121111 112   344678899999999


Q ss_pred             cCC
Q 023671          117 AGV  119 (279)
Q Consensus       117 ag~  119 (279)
                      ++.
T Consensus        76 a~~   78 (450)
T 1ff9_A           76 IPY   78 (450)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            864

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.45  E-value=0.0047  Score=57.87  Aligned_cols=94  Identities=17%  Similarity=0.177  Sum_probs=60.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|+.. ......++.       +..   ..++++.+++||+|+++.
T Consensus       189 l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-------~~~---~~~l~ell~~aDvV~l~~  255 (393)
T 2nac_A          189 LEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNC  255 (393)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECS
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-------cee---cCCHHHHHhcCCEEEEec
Confidence            45679999999 9999999999988787  999999875 222211111       111   125678899999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ....   .++ .++  |    .   +.+....|++++|+++
T Consensus       256 Plt~---~t~-~li--~----~---~~l~~mk~gailIN~a  283 (393)
T 2nac_A          256 PLHP---ETE-HMI--N----D---ETLKLFKRGAYIVNTA  283 (393)
T ss_dssp             CCCT---TTT-TCB--S----H---HHHTTSCTTEEEEECS
T ss_pred             CCch---HHH-HHh--h----H---HHHhhCCCCCEEEECC
Confidence            4321   111 111  1    1   2223345788998875

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.45  E-value=0.0099  Score=52.02  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC------HHhhhCCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d------~~eal~~ADiV  113 (279)
                      .+.+.|+||++-+|..++..|++.|.  +|++.|+++....     .. ...++..+. .-+|      ..+.+..-|++
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~~~-----~~-~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL   82 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADGVH-----AP-RHPRIRREELDITDSQRLQRLFEALPRLDVL   82 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTSTT-----SC-CCTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHh-----hh-hcCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            45888999999999999999999998  9999999761100     00 011111111 0111      23446789999


Q ss_pred             EEccCCCCCCC-Cchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          114 IIPAGVPRKPG-MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       114 Iitag~~~k~g-~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |..||...... .+..   ..+..|+    -..+...+.+++.  .+.||+++.
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS  134 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIAS  134 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECC
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEee
Confidence            99999764221 1211   2334443    3455666666543  367777764

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.44  E-value=0.0029  Score=58.58  Aligned_cols=74  Identities=15%  Similarity=0.244  Sum_probs=43.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCC----CeEEEEeCCCCHHhhhCCCCEEE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG----AVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~----~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      ++++||+|+||+|.+|..++..|...+.+ ||+.+......+...+-.|....    ..+..    .+ ++.++++|+||
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~----~~-~~~~~~vDvVf   87 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS----VK-DADFSTVDAVF   87 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC----GG-GCCGGGCSEEE
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee----cc-hhHhcCCCEEE
Confidence            34579999999999999999998877644 56655433322222221111100    11111    11 33456899999


Q ss_pred             EccC
Q 023671          115 IPAG  118 (279)
Q Consensus       115 itag  118 (279)
                      ++.|
T Consensus        88 ~atp   91 (359)
T 1xyg_A           88 CCLP   91 (359)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9874

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.44  E-value=0.005  Score=55.86  Aligned_cols=72  Identities=17%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .++|+|||+ |.+|...+..|.....+.+|.++|++.++..+.++.... ...+..   . ++++++++||+||.+..
T Consensus       121 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~---~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          121 SSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM---A-APADIAAQADIVVTATR  192 (313)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE---e-CHHHHHhhCCEEEEccC
Confidence            358999998 999999988777643367999999984334444444221 122332   2 67899999999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.43  E-value=0.0011  Score=61.87  Aligned_cols=104  Identities=18%  Similarity=0.205  Sum_probs=68.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH--------hhhhcccCCCeEEEEeCCCCHHhhh
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT--------ADISHMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~--------~DL~~~~~~~~v~~~~~~~d~~eal  107 (279)
                      ..+..||+|+|| |.+|..++..|...|. .+|+++|++-  ..+..        ..+.+. ...    .....++.+++
T Consensus       189 ~l~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~----~~~~~~L~eav  261 (388)
T 1vl6_A          189 KIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP----ERLSGDLETAL  261 (388)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT----TCCCSCHHHHH
T ss_pred             CCCCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc----cCchhhHHHHH
Confidence            456789999999 9999999998888774 7999999972  11111        111111 111    11134689999


Q ss_pred             CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHH
Q 023671          108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP  166 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~  166 (279)
                      +++|++|-+.+ |   +.           +.+++++.|+   ++.+|+=.+||.--.++
T Consensus       262 ~~ADVlIG~Sa-p---~l-----------~t~emVk~Ma---~~pIIfalSNPt~E~~p  302 (388)
T 1vl6_A          262 EGADFFIGVSR-G---NI-----------LKPEWIKKMS---RKPVIFALANPVPEIDP  302 (388)
T ss_dssp             TTCSEEEECSC-S---SC-----------SCHHHHTTSC---SSCEEEECCSSSCSSCH
T ss_pred             ccCCEEEEeCC-C---Cc-----------cCHHHHHhcC---CCCEEEEcCCCCCCCCH
Confidence            99999988754 3   21           1234444433   56788888999865554

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.42  E-value=0.0042  Score=57.15  Aligned_cols=90  Identities=17%  Similarity=0.282  Sum_probs=60.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..++|+|||. |.+|+.+|..+...|.  +|..+|+....    .....     +..    .++++.+++||+|+++...
T Consensus       147 ~gktvgIiGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~----~~~~~-----~~~----~~l~ell~~aDvV~l~~Pl  210 (343)
T 2yq5_A          147 YNLTVGLIGV-GHIGSAVAEIFSAMGA--KVIAYDVAYNP----EFEPF-----LTY----TDFDTVLKEADIVSLHTPL  210 (343)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCG----GGTTT-----CEE----CCHHHHHHHCSEEEECCCC
T ss_pred             CCCeEEEEec-CHHHHHHHHHHhhCCC--EEEEECCChhh----hhhcc-----ccc----cCHHHHHhcCCEEEEcCCC
Confidence            3569999998 9999999999998888  99999987532    11111     111    1578889999999998743


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ..   .++. ++  |.       +.+....|++++|+++
T Consensus       211 t~---~t~~-li--~~-------~~l~~mk~gailIN~a  236 (343)
T 2yq5_A          211 FP---STEN-MI--GE-------KQLKEMKKSAYLINCA  236 (343)
T ss_dssp             CT---TTTT-CB--CH-------HHHHHSCTTCEEEECS
T ss_pred             CH---HHHH-Hh--hH-------HHHhhCCCCcEEEECC
Confidence            21   1111 11  11       1233445889999985

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.41  E-value=0.00077  Score=63.14  Aligned_cols=109  Identities=17%  Similarity=0.266  Sum_probs=68.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-hhHHhhhhcccC-C-CeEEEEeCCCCHHhhhCCCCEE
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~-~g~~~DL~~~~~-~-~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      ..+..||+|+|| |.+|..++..+...|. .+|+++|.+- . ++...+|.+... + .+........++.++++++|++
T Consensus       185 ~l~d~kVVi~GA-GaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          185 SLDEVSIVVNGG-GSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             CTTSCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            355679999999 9999999998887774 7999999864 1 111012322110 0 0000001123578999999998


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHH
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP  166 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~  166 (279)
                      |=+.+ |   |.           +.+++++.|+   ++++|+=.|||.--.++
T Consensus       263 IG~Sa-p---gl-----------~T~EmVk~Ma---~~pIIfalsNPt~E~~p  297 (398)
T 2a9f_A          263 IGVSA-P---GV-----------LKAEWISKMA---ARPVIFAMANPIPEIYP  297 (398)
T ss_dssp             EECCS-T---TC-----------CCHHHHHTSC---SSCEEEECCSSSCSSCH
T ss_pred             EecCC-C---CC-----------CCHHHHHhhC---CCCEEEECCCCCccCCH
Confidence            87643 2   32           1234444454   78999999999865554

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.40  E-value=0.0099  Score=54.69  Aligned_cols=75  Identities=16%  Similarity=0.171  Sum_probs=43.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHhhhhcccC--------CCeEEEEeCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT--------GAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~~~g~~~DL~~~~~--------~~~v~~~~~~~d~~eal~~A  110 (279)
                      +++||+|+||+|.+|..++..|...+.+ ||+.+ |.+...+...+-.|...        ...+.. .. .+. +.+.++
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-~d~-~~~~~v   78 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYL-ELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPI-VS-TNY-EDHKDV   78 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBE-EC-SSG-GGGTTC
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCc-EEEEEecChhhcCCCHHHhcCcccccccccCCceeEE-ee-CCH-HHhcCC
Confidence            3579999999899999999988766533 67666 43322222221111100        011111 11 133 456899


Q ss_pred             CEEEEccC
Q 023671          111 DLVIIPAG  118 (279)
Q Consensus       111 DiVIitag  118 (279)
                      |+||++.+
T Consensus        79 DvVf~atp   86 (350)
T 2ep5_A           79 DVVLSALP   86 (350)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.40  E-value=0.011  Score=52.86  Aligned_cols=98  Identities=20%  Similarity=0.253  Sum_probs=63.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..+.++|+|||+ |.+|..++..+...|.  +|..+|++....  ..+....  ...  .. ..++.+.+++||+||.+.
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~d~~~~~~--~~~~~~g--~~~--~~-~~~l~~~l~~aDvVi~~~  223 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGA--NVKVGARSSAHL--ARITEMG--LVP--FH-TDELKEHVKDIDICINTI  223 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHTT--CEE--EE-GGGHHHHSTTCSEEEECC
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCC--CeE--Ec-hhhHHHHhhCCCEEEECC
Confidence            356789999998 9999999999998887  999999865211  1111111  111  11 135678899999999987


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-CCCCc
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNS  163 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-NPvd~  163 (279)
                      ..    +.     +  |.    +   .+....|.+++++++ +|.+.
T Consensus       224 p~----~~-----i--~~----~---~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          224 PS----MI-----L--NQ----T---VLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             SS----CC-----B--CH----H---HHTTSCTTCEEEECSSTTCSB
T ss_pred             Ch----hh-----h--CH----H---HHHhCCCCCEEEEEeCCCCCc
Confidence            53    11     1  11    1   233345788888885 56654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.39  E-value=0.014  Score=56.18  Aligned_cols=67  Identities=13%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC------CCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN------PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~------~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      +||+|||. |.+|.+++..|...      |+  +|++.+...  ....+.+..-.......      .+..+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~ta------~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGTL------GDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTCE------EEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCCC------CCHHHHHhcCCEE
Confidence            59999998 99999999999887      77  776655543  22222222111000000      2457899999999


Q ss_pred             EEcc
Q 023671          114 IIPA  117 (279)
Q Consensus       114 Iita  117 (279)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9986

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.36  E-value=0.018  Score=52.99  Aligned_cols=70  Identities=19%  Similarity=0.364  Sum_probs=46.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +||+|+||+|.+|.-+...|...+ ...|+.++...+..|+...+..    ..+.... . + .+.+.++|+||.+.|
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~----~~~~~~~-~-~-~~~~~~~Dvvf~a~~   72 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRG----QEIEVED-A-E-TADPSGLDIALFSAG   72 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETT----EEEEEEE-T-T-TSCCTTCSEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecC----CceEEEe-C-C-HHHhccCCEEEECCC
Confidence            599999999999999999888874 2347888876553344333221    1222211 1 2 245789999999865

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.34  E-value=0.0045  Score=54.48  Aligned_cols=79  Identities=10%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             hhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh
Q 023671           28 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        28 ~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal  107 (279)
                      |.+++...  +.+. ||.|||+ |.+|..++..|...|. .+|.++|++..  .+.++.+..   ....   ..++.+++
T Consensus        98 ~~~~l~~~--~~~~-~vliiGa-Gg~a~ai~~~L~~~G~-~~I~v~nR~~~--ka~~la~~~---~~~~---~~~~~~~~  164 (253)
T 3u62_A           98 VVKSLEGV--EVKE-PVVVVGA-GGAARAVIYALLQMGV-KDIWVVNRTIE--RAKALDFPV---KIFS---LDQLDEVV  164 (253)
T ss_dssp             HHHHTTTC--CCCS-SEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESCHH--HHHTCCSSC---EEEE---GGGHHHHH
T ss_pred             HHHHHHhc--CCCC-eEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHH--HHHHHHHHc---ccCC---HHHHHhhh
Confidence            55555543  2456 9999999 9999999999998884 68999998752  223333211   1111   23566778


Q ss_pred             CCCCEEEEccCC
Q 023671          108 TGMDLVIIPAGV  119 (279)
Q Consensus       108 ~~ADiVIitag~  119 (279)
                      +++|+||.+...
T Consensus       165 ~~aDiVInatp~  176 (253)
T 3u62_A          165 KKAKSLFNTTSV  176 (253)
T ss_dssp             HTCSEEEECSST
T ss_pred             cCCCEEEECCCC
Confidence            999999998643

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.34  E-value=0.005  Score=55.76  Aligned_cols=114  Identities=13%  Similarity=0.102  Sum_probs=62.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcc----cCCCeEEEEe-CCCC---HHhhhC---
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRGFL-GQPQ---LENALT---  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~----~~~~~v~~~~-~~~d---~~eal~---  108 (279)
                      ++|.|+||+|.+|..++..|+..|.  ++++++.+.  .......+...    ....++..+. .-+|   +.+.++   
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~--~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4789999999999999999999987  677776543  21111111110    0012233221 1122   223333   


Q ss_pred             --CCCEEEEccCCCCCCC---Cch---hhHHHhhHHHH----HHHHHHHHHhCCCceEEEec
Q 023671          109 --GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       109 --~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~----~~i~~~I~~~~p~a~viv~T  158 (279)
                        ..|++|++||......   .+.   ...+..|+...    +.+.+.+.+.. .+.||++|
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~-~g~IV~is  141 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTG  141 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEC
Confidence              4899999998753211   121   23455665544    44444455443 45566654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.34  E-value=0.016  Score=52.71  Aligned_cols=90  Identities=17%  Similarity=0.212  Sum_probs=56.9

Q ss_pred             hhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC---C--chhHHhhhhcccCCCeEEEEeCC-
Q 023671           27 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---N--TPGVTADISHMDTGAVVRGFLGQ-  100 (279)
Q Consensus        27 ~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~---~--~~g~~~DL~~~~~~~~v~~~~~~-  100 (279)
                      =|.+++....-..+.+++.|+|+ |-+|..++..|...|. .+|.+++++   .  ++..+.++.... ...+....-. 
T Consensus       140 Gf~~~L~~~~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga-~~V~i~nR~~~~~~~a~~la~~~~~~~-~~~~~~~~~~~  216 (315)
T 3tnl_A          140 GYMRALKEAGHDIIGKKMTICGA-GGAATAICIQAALDGV-KEISIFNRKDDFYANAEKTVEKINSKT-DCKAQLFDIED  216 (315)
T ss_dssp             HHHHHHHHTTCCCTTSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTC
T ss_pred             HHHHHHHHcCCCccCCEEEEECC-ChHHHHHHHHHHHCCC-CEEEEEECCCchHHHHHHHHHHhhhhc-CCceEEeccch
Confidence            35555554332345679999998 9999999999998884 589999998   3  222233333221 2233332211 


Q ss_pred             -CCHHhhhCCCCEEEEccCC
Q 023671          101 -PQLENALTGMDLVIIPAGV  119 (279)
Q Consensus       101 -~d~~eal~~ADiVIitag~  119 (279)
                       +++.+.+.++|+||.+...
T Consensus       217 ~~~l~~~l~~aDiIINaTp~  236 (315)
T 3tnl_A          217 HEQLRKEIAESVIFTNATGV  236 (315)
T ss_dssp             HHHHHHHHHTCSEEEECSST
T ss_pred             HHHHHhhhcCCCEEEECccC
Confidence             1244667899999998643

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.33  E-value=0.0074  Score=55.14  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=47.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..++|+|||. |.+|..+|..+...|.  +|+.+|+..... ..++   .     . .  ..++++.+++||+|+++..
T Consensus       145 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~---~-----~-~--~~~l~ell~~aDvV~l~~p  208 (333)
T 1j4a_A          145 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK---G-----Y-Y--VDSLDDLYKQADVISLHVP  208 (333)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT---T-----C-B--CSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh---C-----e-e--cCCHHHHHhhCCEEEEcCC
Confidence            4569999998 9999999999988887  999999876322 1111   1     0 1  1256788899999999864

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.30  E-value=0.0044  Score=57.42  Aligned_cols=95  Identities=22%  Similarity=0.247  Sum_probs=60.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~e-v~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      ...++|+|||. |.+|..+|..+...|.  + |+.+|++. ......++.       +..   ..++++.+++||+|+++
T Consensus       162 l~g~tvgIIG~-G~IG~~vA~~l~~~G~--~~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~  228 (364)
T 2j6i_A          162 IEGKTIATIGA-GRIGYRVLERLVPFNP--KELLYYDYQALPKDAEEKVG-------ARR---VENIEELVAQADIVTVN  228 (364)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--SEEEEECSSCCCHHHHHHTT-------EEE---CSSHHHHHHTCSEEEEC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCCccchhHHHhcC-------cEe---cCCHHHHHhcCCEEEEC
Confidence            45679999998 9999999999987775  6 99999865 221111111       121   13577889999999998


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .....   .++ .++  |    .   +.+....|++++|+++.
T Consensus       229 ~P~t~---~t~-~li--~----~---~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          229 APLHA---GTK-GLI--N----K---ELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             CCCST---TTT-TCB--C----H---HHHTTSCTTEEEEECSC
T ss_pred             CCCCh---HHH-HHh--C----H---HHHhhCCCCCEEEECCC
Confidence            74321   111 111  1    1   12333457889998864

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.30  E-value=0.0092  Score=51.35  Aligned_cols=57  Identities=25%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh-CCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev-~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal-~~ADiVIitag  118 (279)
                      |||+|||+ |.+|..++..|...++  +| .++|.++. .  .+           .+   +|+++.+ .++|+|+++..
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~~-~--~~-----------~~---~~~~~l~~~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRGE-H--EK-----------MV---RGIDEFLQREMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC-C--TT-----------EE---SSHHHHTTSCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCcc-h--hh-----------hc---CCHHHHhcCCCCEEEECCC
Confidence            58999998 9999999988887776  77 68887641 1  10           11   3566767 69999999864

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.29  E-value=0.017  Score=51.38  Aligned_cols=73  Identities=22%  Similarity=0.225  Sum_probs=45.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEE-EEeCCCchhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~-L~D~~~~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +++||+|+|++|.+|+.++..+... ++  +|+ .+|.+.......|+.....  ...+..   ++|+++.++++|+||.
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVID   78 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFID   78 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEEE
Confidence            4579999999999999999877654 44  666 7887642111122222110  112222   2356677889999995


Q ss_pred             cc
Q 023671          116 PA  117 (279)
Q Consensus       116 ta  117 (279)
                      .+
T Consensus        79 ft   80 (273)
T 1dih_A           79 FT   80 (273)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.25  E-value=0.011  Score=54.36  Aligned_cols=31  Identities=35%  Similarity=0.607  Sum_probs=25.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY   73 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~   73 (279)
                      +||+|+||+|.+|..++..|...+. -||+.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~-~ev~~i   39 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPM-FELTAL   39 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSS-EEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCC-CEEEEE
Confidence            6999999999999999998876653 277666

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.24  E-value=0.021  Score=54.37  Aligned_cols=91  Identities=19%  Similarity=0.147  Sum_probs=60.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|+|. |.||..+|..+...|.  +|+.+|+++... .+.  .+.     .+.    .+++++++.||+|+.+.
T Consensus       245 L~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A~--~~G-----~~v----v~LeElL~~ADIVv~at  310 (464)
T 3n58_A          245 MAGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQAA--MDG-----FEV----VTLDDAASTADIVVTTT  310 (464)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHH--HTT-----CEE----CCHHHHGGGCSEEEECC
T ss_pred             ccCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHHH--hcC-----cee----ccHHHHHhhCCEEEECC
Confidence            34579999998 9999999999988887  999999876211 111  111     111    14678999999999876


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      |..   +.           +-.+.   +....|.+++++++..
T Consensus       311 gt~---~l-----------I~~e~---l~~MK~GAILINvGRg  336 (464)
T 3n58_A          311 GNK---DV-----------ITIDH---MRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             SSS---SS-----------BCHHH---HHHSCTTEEEEECSSS
T ss_pred             CCc---cc-----------cCHHH---HhcCCCCeEEEEcCCC
Confidence            532   11           01122   2333488999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	7e-43
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	6e-35
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	4e-31
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	4e-29
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	5e-29
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	7e-29
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	1e-28
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	1e-28
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	2e-28
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	4e-28
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	7e-28
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	7e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	3e-26
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	1e-24
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	7e-24
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	9e-24
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	1e-23
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	1e-23
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	5e-23
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	6e-22
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	7e-22
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	9e-22
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	3e-18
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	2e-16
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	3e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	4e-16
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	1e-13
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	1e-13
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	5e-13
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	2e-12
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	6e-12
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	8e-12
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	1e-11
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	1e-11
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	1e-11
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	5e-11
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	6e-11
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	7e-11
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-10
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	2e-10
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	3e-10
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	8e-10
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	8e-10
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	7e-09
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	1e-08
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	2e-08

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  141 bits (357), Expect = 7e-43
 Identities = 92/143 (64%), Positives = 115/143 (80%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 163 STVPIAAEVFKKAGTYDPKKLLG 185
           ST+PI AEVFKK G Y+P K+ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  120 bits (303), Expect = 6e-35
 Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 3/145 (2%)

Query: 43  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 100
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 62  -DATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           VN+TV IAAEV KKAG YD  KL G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  111 bits (280), Expect = 4e-31
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTGA---VV 94
            +A+ GAAG I   L   +    +        L L     +      ++     +   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 95  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 153
           R              +D  ++    PR PGM R  L +IN  I     + +      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 154 VNLISNPVNSTVPIAAE 170
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  105 bits (264), Expect = 4e-29
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KVAI+GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 163 STVPIAAEVFKKAGTYDPKKLLG 185
               +     +K       K++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  105 bits (263), Expect = 5e-29
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+  +GA G +G   A    +N  V  + L D+      G   D++H   G      +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
               + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGV 186
           ++    I      K       ++ G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  105 bits (263), Expect = 7e-29
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 12/149 (8%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVS--------VLHLYDVVNTPGVTADISHMDTGAVV 94
           +VA+ GAAG IG  L   +    ++         +L +   +                ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 95  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 153
            G       + A    D  ++    PRK GM R DL  +N  I       +A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 154 VNLISNPVNSTVPIAAEVFKKAGTYDPKK 182
           V ++ NP N+   IA   +K A   +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  104 bits (260), Expect = 1e-28
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           K+ I+G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
               L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 163 STVPIAAEVFKKAGTYDPKKLLG 185
               +    F K    DP+K+ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  104 bits (260), Expect = 1e-28
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL 98
           KV+++GAAG +G      + +  +   +   D+ +    T G  AD +H    A      
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIAYDSNTR 59

Query: 99  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158
            +        G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +      S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 159 NPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           NPV+    +      +AG    ++++G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  103 bits (259), Expect = 2e-28
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+A++GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
              E      D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI+NP
Sbjct: 62  DDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           V+    IA  V +K       ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  103 bits (257), Expect = 4e-28
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQP 101
           K++I+GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161
                    D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 162 NSTVPIAAEVFKKAGTYDPKKLLG 185
           ++   +AAEV      +  ++++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  102 bits (255), Expect = 7e-28
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                     D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLGV 186
           ++    +A            ++++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  102 bits (256), Expect = 7e-28
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 43  KVAILGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV--- 94
           +V + GAAG I   L        +       +L L D+    GV   +        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 95  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 154
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K    +  
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 155 NL-ISNPVNSTVPIAAEVFKK 174
            + + NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 98.6 bits (245), Expect = 3e-26
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 39  AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 97
           A   K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 98  LGQPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 152
           +      + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 153 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186
            + +++NPV+  V +      +       K++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 93.9 bits (233), Expect = 1e-24
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162
             +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 163 STVPIAAEVFKKAGTYDPKKLLG 185
               I      K   +  ++++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 92.1 bits (228), Expect = 7e-24
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 41  GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFL 98
           G +V ++GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 99  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158
                +      DLV+I AG  +KPG TR DL + N  I R++ E +          + +
Sbjct: 65  WHGDYD-DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 159 NPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           NPV+    I      K      ++++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 92.1 bits (228), Expect = 9e-24
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQP 101
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +   
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 102 -QLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP   + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 156 LISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.0 bits (228), Expect = 1e-23
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ + +  L   L L D       G   D+ H     +    +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL-FLSTPKIVF 78

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
            +  N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + +++NP
Sbjct: 79  GKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           V+    +      K   +   +++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 92.5 bits (229), Expect = 1e-23
 Identities = 56/91 (61%), Positives = 64/91 (70%)

Query: 186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 245
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P   F Q++   LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 246 RIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 276
           RIQ  GTEVV+AKAGAGSATLSM        
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFV 91

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 5e-23
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 100
           K+ ++G  G +G   A+ +    L   L L DV+     G   D+ H          +  
Sbjct: 22  KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80

Query: 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160
                      +V++ AGV ++ G +R +L   N  + + +   I K  P+  + ++SNP
Sbjct: 81  KDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP 139

Query: 161 VNSTVPIAAEVFKKAGTYDPKKLLG 185
           V+    +      K       +++G
Sbjct: 140 VDILTYVT----WKLSGLPKHRVIG 160

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 87.1 bits (215), Expect = 6e-22
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD----VVNTPGVTADISHMDTGAVV--RG 96
           KV I+GA+G +G   A+L+   P +  L L      +    G+  DI     G       
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 97  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156
           ++   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    + +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK-IFV 120

Query: 157 ISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 87.5 bits (216), Expect = 7e-22
 Identities = 57/91 (62%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 245
           VT LD++R+NTFVAE+ G  P +V+VPV+GGH+GVTILPLLSQV     FT++E   LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 246 RIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 276
           RIQN GTEVVEAKAG GSATLSM        
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFG 90

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 86.7 bits (214), Expect = 9e-22
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 102
           K+ I+G  G +G  +A  +    +       D          I   D  A +        
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 103 LEN-ALTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157
            +  AL   D+VI   G  +     P   R       + +V+++   + +   +  + +I
Sbjct: 62  NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121

Query: 158 SNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
           SNPV+    +   +F+    +   K++G
Sbjct: 122 SNPVD----VITALFQHVTGFPAHKVIG 145

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 77.8 bits (191), Expect = 3e-18
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 32/167 (19%)

Query: 43  KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 97
           ++A++G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 98  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA----------- 146
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISD-TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 147 --------KCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185
                   +   NAT+   +NP         E  +     + +K +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 72.4 bits (177), Expect = 2e-16
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----FTQEETEYL 243
           +LD  R  +F+A  LG+  +D++  V+GGH    +  +                E  + L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 244 TNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 276
             R +NGG E+VE     GSA  +   ++    
Sbjct: 63  VERTRNGGAEIVEH-LKQGSAFYAPASSVVEMV 94

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 72.4 bits (177), Expect = 3e-16
 Identities = 26/161 (16%), Positives = 42/161 (26%), Gaps = 30/161 (18%)

Query: 43  KVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTGAV 93
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI-------- 145
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 146 ------------AKCCPNATVNLISNPVNSTVPIAAEVFKK 174
                        + CP+A +   +NP            K+
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ 162

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 72.0 bits (176), Expect = 4e-16
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 30/162 (18%)

Query: 42  FKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTGAV 93
           F + I G  G    P   L +L  +    +  L LYD      +      D+   +    
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPD 62

Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA------- 146
           +         E A T +D V+    V +      D+   +  G+V     G         
Sbjct: 63  IEFA-ATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 147 -------------KCCPNATVNLISNPVNSTVPIAAEVFKKA 175
                        K  P+A +   SNP          +   +
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 65.5 bits (159), Expect = 1e-13
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY----L 243
           +LD  R  TF+A   G+  +DV   ++GGH    +             ++         +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 244 TNRIQNGGTEVVEAKAGAGSATLSM 268
             R + GG E+V      GSA  + 
Sbjct: 63  VERTRKGGGEIVNLLKT-GSAYYAP 86

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 25/166 (15%), Positives = 41/166 (24%), Gaps = 34/166 (20%)

Query: 41  GFKVAILGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTGAV 93
             K+ I+GA G     L +   L K   L  S + L D+       +        +    
Sbjct: 2   SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 60

Query: 94  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI-------------------- 133
              F     L++ +   D VI  A V     + +                          
Sbjct: 61  DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYY 120

Query: 134 ------NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK 173
                        +   I K  P A     +NP+     +      
Sbjct: 121 TFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 64.0 bits (155), Expect = 5e-13
 Identities = 18/83 (21%), Positives = 29/83 (34%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246
           T LD  RA   +A  LG+   DV   ++ G+   T  P ++  K      +         
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 247 IQNGGTEVVEAKAGAGSATLSMR 269
                 E +      G+A +  R
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKAR 83

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 61.4 bits (148), Expect = 2e-12
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQ------VKPPCSFTQEET 240
           T+LD  R    V E   LDPR V    +G H     +   +       +         + 
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDL 61

Query: 241 EYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH 275
             +    + GG  V+  K        +  + +   
Sbjct: 62  AAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKA 96

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 8/96 (8%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------E 238
             LD  R    + E LG+        V+G H                            +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 239 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRM 274
           + + L   + +   EV++ K     A      +L  
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE 98

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 60.3 bits (145), Expect = 8e-12
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 237
           T+LD  R    + E   + P++V   ++G H    +              +         
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 238 -EETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH 275
            ++ E +   +++   +++E K             +   
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRA 99

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 237
           T+LD +R    ++E LG+D ++V   ++G H    +           +  +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 238 --EETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH 275
             E+ + +   ++  G  +++ K             +   
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVET 100

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 12/91 (13%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------ 234
           T LD  R    +A+  G++ ++V   + G H    +    S                   
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 235 FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265
              ++ E +   ++N   +++  K     A 
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYAI 91

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILP----------LLSQVKPPCSFT 236
           T LD  R    +AE++ +D R V   ++G H                 +   VK      
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIK 60

Query: 237 QEETEYLTNRIQNGGTEVVEAK 258
           +++   +   +++   E+++ K
Sbjct: 61  EDKLVKMFEDVRDAAYEIIKLK 82

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 57.9 bits (139), Expect = 5e-11
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246
           T LD +R    +A+  G+   +V   ++G H G +++PLLS         Q+   +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 247 IQNGGTEVVEAKAGAGSATLSM 268
           I     +V              
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGS 83

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.0 bits (139), Expect = 6e-11
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----------CSFT 236
           T+LD  R  T +A+  G  PR V V V+G H    +      +                 
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 237 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 276
            +  E    + +    E++E K     A      ++    
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESI 101

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 7e-11
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 13/102 (12%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 237
             LD  R    +AE LG+ P      ++G H G + + + S V       Q         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 238 ---EETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 276
              E  + +   +     EV++ K     A      +L    
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESM 103

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQV---KPPCSFTQEETEYL 243
             LD  R    ++E      ++V+  ++G H G   +P+ S+V        F+ +E E L
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 244 TNRIQNGGTEVVEAK 258
              +Q    +V+E K
Sbjct: 62  LGDLQESAMDVIERK 76

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP 231
           T LD  R    + +   +DPR VD  ++G H G +     S    
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATI 44

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 12/74 (16%), Positives = 23/74 (31%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246
             LD  R    + E LG++P      V+G H   ++           +         T++
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 247 IQNGGTEVVEAKAG 260
            +     V +    
Sbjct: 63  NKQHWKNVHKQVVE 76

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 54.5 bits (130), Expect = 8e-10
 Identities = 16/82 (19%), Positives = 27/82 (32%)

Query: 188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRI 247
           MLD  R   +VA+ L + PRDV   V+G H    +  +           +   + +    
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 248 QNGGTEVVEAKAGAGSATLSMR 269
           Q          +G        +
Sbjct: 63  QLEEIAEHTKVSGGEIVRFLGQ 84

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 54.5 bits (130), Expect = 8e-10
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPL---------LSQVKPPCSFTQE 238
           +LD  R   ++++ L + PRDV+  +VG H    +L           L +       +  
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 239 ETEYLTNRIQNGGTEVV 255
           E E + +R  N   E+V
Sbjct: 62  ELEAIFDRTVNTALEIV 78

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 52.3 bits (125), Expect = 7e-09
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET------ 240
           T LD  RA   +A   G+    V    + G+   T +P     K      +E        
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 241 -EYLTNRIQNGGTEVVEAKAG--AGSATLSMR 269
            E  T  +Q  G  +++      A S  +S+ 
Sbjct: 61  EEEFTITVQKRGGALIQKWGRSSAASTAVSIA 92

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK----PPCSFTQEETEY 242
           T LD  RA   +A+  G     +    V G+   T+ P L   +    P       E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 243 LTNRIQNGGTEVVEAKAGAGSATLSM 268
                          +A   S+  S 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASA 87

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 189 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS 234
           LD  RA + +A   G     ++   V G+   T+       +   +
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGA 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	100.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	100.0
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.98
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.94
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.93
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.92
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.91
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.77
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.75
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.73
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.73
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.73
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.72
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.7
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.7
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.7
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.7
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.68
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.68
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.68
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.67
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.64
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.64
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.62
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.62
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.6
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.58
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.57
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.57
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.54
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.43
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.96
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.89
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.84
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.77
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.69
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.68
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.66
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.66
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.63
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.61
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.59
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.57
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.54
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.49
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.49
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.48
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.47
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.47
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.36
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.36
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.29
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.28
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.27
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.24
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.21
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	98.17
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.16
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.16
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	98.15
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.12
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.12
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.11
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.01
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.99
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.99
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.97
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.95
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.9
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.9
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	97.9
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.9
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.78
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.72
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.72
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.71
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.67
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.66
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.63
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.61
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.58
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.53
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.5
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.4
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.4
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.37
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.33
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.32
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.31
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.24
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.22
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.22
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.21
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.19
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.16
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.14
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.14
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.13
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.12
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.03
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.02
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.99
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.98
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.97
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.95
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.95
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.93
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.93
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.9
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.89
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.86
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.86
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.82
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.82
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.82
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.82
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.8
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.79
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.75
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.73
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.72
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.7
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.7
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.7
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.69
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.69
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.68
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.67
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.67
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.67
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.67
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.63
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.61
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.57
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.57
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.56
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.56
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.54
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.52
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.5
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.48
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.46
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.46
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.45
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.44
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.43
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.41
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.4
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.37
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.34
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.31
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.28
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.25
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.24
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.24
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.2
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.18
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.17
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.13
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.1
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.09
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.02
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	96.0
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.98
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.97
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.96
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.96
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.95
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.94
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.92
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.91
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.86
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.83
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.8
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.7
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	95.7
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.68
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.62
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.56
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.55
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.55
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.54
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.54
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.49
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.49
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.48
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.33
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	95.33
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.31
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.3
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.3
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.27
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.26
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.25
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.19
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.19
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.18
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.16
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.13
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	95.12
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.09
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.0
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.0
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.94
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.94
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.86
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.82
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.8
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.79
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.57
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.53
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.51
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.48
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.42
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.38
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.38
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.35
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.32
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.26
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.24
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.2
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.19
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.1
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.09
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.05
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.04
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	94.04
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.84
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.8
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.8
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.75
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.68
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.64
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.64
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.59
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.58
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.57
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.43
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.39
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	93.37
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.37
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.14
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.13
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	93.09
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.03
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.02
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.94
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.93
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	92.92
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.91
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.77
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.67
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.46
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.4
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.35
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.33
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.02
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.01
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	91.82
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.81
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.65
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.64
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.56
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.45
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.44
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.43
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.4
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.39
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	91.19
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	91.09
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.01
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.73
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.67
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.46
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.35
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.21
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.13
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	90.09
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.05
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.01
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.01
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.86
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.63
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.22
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	89.09
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	88.98
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	88.85
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	88.73
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.57
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.36
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	88.06
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	88.01
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	87.99
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.92
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.91
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	87.84
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	87.77
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	87.7
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.52
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	87.43
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	87.39
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	87.36
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.32
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.28
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	86.51
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.48
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	86.46
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.25
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	85.56
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.44
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.37
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.37
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	85.35
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	85.29
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.04
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	85.01
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.91
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	84.89
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	84.4
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	84.32
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.27
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.73
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	83.46
d1ls1a2	207	GTPase domain of the signal sequence recognition p	83.13
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	82.65
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	82.2
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.96
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	81.53
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	81.33
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	81.24
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	81.2
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	80.84
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	80.77
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	80.15
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	80.07
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	80.05

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6.9e-37  Score=250.00  Aligned_cols=143  Identities=64%  Similarity=1.084  Sum_probs=133.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  122 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~k  122 (279)
                      ||+||||+|+||+++|+.|+.+++++||+|+|+++.+++++|+.|.........+...++.+++++|||+||+|+|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999998899999999987666656544456778999999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       123 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      +|++|.|++..|++++++++++|.+++|+++++++|||+|+||+++++++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5e-36  Score=245.07  Aligned_cols=143  Identities=59%  Similarity=0.962  Sum_probs=131.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |||+||||+|+||+++|+.|+. .++++||+|+|+++ ++|+++||.|.........+.++++ +++++|||+||+|+|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~-~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCC-HHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCC-ccccCCCCEEEECCCc
Confidence            6999999779999999998875 47889999999987 7899999999876666666655556 5789999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      |+++|++|.|++..|.+++++++++|.+++|+++++++|||+|+|++++++++++.++||++||||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=3.2e-36  Score=245.71  Aligned_cols=139  Identities=27%  Similarity=0.412  Sum_probs=124.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCC-eEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~-~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |.||+|||+ |+||+++|+.++.+++++||+|+|+++  ++|+++||+|...+. ..... .+++ +++++|||+||+|+
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~-~~~~-~~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDD-PEICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceee-cCCC-HHHhhCCcEEEEec
Confidence            469999998 999999999999999999999999988  789999999985322 22222 2346 57899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      |.++++|++|.|++..|++++++++++|++++|+++++++|||+|+||+++    |+.+|||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~----~~~sg~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH----HHHHCCChhhccCC
Confidence            999999999999999999999999999999999999999999999999765    77889999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.2e-35  Score=240.49  Aligned_cols=136  Identities=28%  Similarity=0.503  Sum_probs=123.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      |||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|...    .+++..   ++| +++++|||+||+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~---~~d-~~~~~~adiVvi   75 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc---CCC-HHHhccccEEEE
Confidence            79999998 999999999999999999999999988  7899999999742    223332   346 488999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      ++|.|+++|++|.|++.+|++++++++++|.+++|+++++++|||+|+||+++    |+.+|||++||||+
T Consensus        76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViG~  142 (142)
T d1ojua1          76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEEC
T ss_pred             eccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH----HHHHCCChhcEecC
Confidence            99999999999999999999999999999999999999999999999999754    78899999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.1e-35  Score=241.18  Aligned_cols=138  Identities=25%  Similarity=0.332  Sum_probs=124.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      ..||+|||| |+||+++|+.|+++++++||+|+|+++  ++|+++||.|....  ..++..  +.| +++++|||+||++
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d-~~~l~daDvvvit   81 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGD-YDDCRDADLVVIC   81 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECC-GGGTTTCSEEEEC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECC-HHHhccceeEEEe
Confidence            459999998 999999999999999999999999988  78999999997532  234433  245 5889999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      +|.++++|++|.|++.+|++++++++++|++++|+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~----~k~sg~p~~rViG~  147 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGS  147 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEEC
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH----HHHHCcChhheecC
Confidence            9999999999999999999999999999999999999999999999999765    77789999999997

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=9.6e-35  Score=240.87  Aligned_cols=138  Identities=22%  Similarity=0.340  Sum_probs=123.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +..||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|....  .....  ...| +++++|||+||+
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~--~~~d-~~~~~~adiVVi   94 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV--ADKD-YSVTANSKIVVV   94 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEE--ECSS-GGGGTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEE--eccc-hhhcccccEEEE
Confidence            4569999998 999999999999999999999999987  78999999997532  22222  2346 588999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      +||.++++|++|+|++..|++++++++++|++++|+++++++|||+|+||+++    ++.+|||++||||
T Consensus        95 tAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~----~k~sglp~~rViG  160 (160)
T d1i0za1          95 TAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT----WKLSGLPKHRVIG  160 (160)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             ecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999765    7778999999998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=1.8e-34  Score=235.06  Aligned_cols=137  Identities=29%  Similarity=0.387  Sum_probs=116.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +||+|||| |+||+++++.++++++++||+|+|+++  ++|+++||.|.... .....+  +.+ +++++|||+||+|+|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~--~~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe--eCc-HHHhCCCceEEEecc
Confidence            49999998 999999999999999999999999988  78999999997542 334433  235 588999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      .++++|++|.|++.+|++++++++++|.+++|+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~----~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH----HHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999999764    77889999999997

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.9e-34  Score=234.79  Aligned_cols=136  Identities=28%  Similarity=0.382  Sum_probs=120.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~----~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ||+||||+|+||+++|+.|+++++++||+|+|++.    ++|+++||.|... ....+...  .+ +++++|||+||+||
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~--~~-~~~~~~aDiVvita   78 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVITA   78 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEee--CC-HHHhhhcCEEEEec
Confidence            99999966999999999999999999999999864    5789999999532 22233322  35 57899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      |.|+++|++|.|++..|++++++++++|.+++|+++++++|||+|+||+++    |+.+|||++||||
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~----~k~sg~~~~rViG  142 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL----YEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH----HHHSSSCGGGEEE
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999754    8889999999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.2e-34  Score=234.00  Aligned_cols=137  Identities=29%  Similarity=0.500  Sum_probs=122.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |||+|||| |.||+++++.++.+++++||+|+|+++  ++|+++|+.|... .......  +++ +++++|||+||+|+|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc--CCc-HHHhcCCCEEEEecc
Confidence            69999998 999999999999999999999999988  7899999999753 2233333  235 578999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      .++++|++|.|++.+|++++++++++|+++||+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~----~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999999765    67789999999995

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=6.1e-35  Score=238.90  Aligned_cols=137  Identities=18%  Similarity=0.244  Sum_probs=116.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|....  ......  +.| +++++|||+||+|+
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d-~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--IND-WAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESC-GGGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccC-HHHhccccEEEEec
Confidence            59999998 999999999999999999999999988  68999999997532  233333  245 57899999999999


Q ss_pred             CCCC----CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          118 GVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       118 g~~~----k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      |.++    ++|++|.|++..|+++++++++.|+++||+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH----HHHhCCCccceeCc
Confidence            9876    67899999999999999999999999999999999999999999765    77889999999995

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.9e-34  Score=232.71  Aligned_cols=138  Identities=30%  Similarity=0.472  Sum_probs=120.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHhhhhcccC--CCeEEEE-eCCCCHHhhhCCCCEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--GAVVRGF-LGQPQLENALTGMDLVI  114 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~----~~g~~~DL~~~~~--~~~v~~~-~~~~d~~eal~~ADiVI  114 (279)
                      |||+||||+|.||+++|+.|+++++++||+|+|+++    ++|+++||.|...  ...++.. ..++| +++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-~~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-LRIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-HHHhccceEEE
Confidence            699999987999999999999999999999999986    4688999999642  2333332 22345 58999999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      +|||.|+++|++|.|++..|++++++++++|.+++|++++ ++|||+|+||+++    ++.++||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~----~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA----LVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH----HHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999998765 5799999999765    7788999999998

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=2.5e-34  Score=234.02  Aligned_cols=138  Identities=31%  Similarity=0.478  Sum_probs=122.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  ++++++|+.|...  ....+... ++| +++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~-~~~-~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-SND-YADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-ESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe-cCC-HHHhcCCeEEEEEE
Confidence            69999998 999999999999999999999999998  6788899988752  22222221 345 58899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      |.|+++|++|.|++.+|++++++++++|.++||+++++++|||+|++|+++    ++.++||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~----~~~sg~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH----HHHhCCChHhEeeC
Confidence            999999999999999999999999999999999999999999999999765    67789999999996

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-34  Score=237.56  Aligned_cols=140  Identities=24%  Similarity=0.368  Sum_probs=123.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +..||+|||+ |.||+++|+.|+.+++++||+|+|+++  ++|+++||.|..............| ++++++||+||+++
T Consensus        18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvita   95 (159)
T d2ldxa1          18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIITA   95 (159)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEec
Confidence            4469999998 999999999999999999999999987  7899999999864221111111346 57899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      |.++++|++|.|++..|++++++++++|.+++|+++++++|||+|+|||++    ++.+|||++||||
T Consensus        96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~----~k~sg~p~~rV~G  159 (159)
T d2ldxa1          96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV----WKISGFPVGRVIG  159 (159)
T ss_dssp             SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH----HHHHCSCTTTEEE
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999765    7788999999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=3.9e-34  Score=234.08  Aligned_cols=139  Identities=25%  Similarity=0.394  Sum_probs=114.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +.+||+|||+ |+||+++|+.|+++++++||+|+|+++  ++|+++||+|... .......  +.| +++++|||+||+|
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d-~~~~~~adivvit   79 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGE-YSDCKDADLVVIT   79 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--ecc-HHHhccccEEEEe
Confidence            4579999998 999999999999999999999999998  7899999999753 2222323  246 4789999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      +|.++++|++|.|++..|++++++++++|.+++|+++++++|||+|+||+++    ++.++||++||||+
T Consensus        80 ag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~----~k~sg~p~~rViG~  145 (146)
T d1ez4a1          80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGS  145 (146)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH----HHHHCcCccceecC
Confidence            9999999999999999999999999999999999999999999999999764    77889999999997

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.9e-33  Score=230.84  Aligned_cols=139  Identities=30%  Similarity=0.504  Sum_probs=120.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +..||+|||+ |.||+++|+.|+++++ +||+|+|+++  ++|+++|+.|...  ..+..... +.+ +++++|||+||+
T Consensus         2 p~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~~~-~~~~~~advvvi   77 (150)
T d1t2da1           2 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNT-YDDLAGADVVIV   77 (150)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECC-GGGGTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe-ccc-ccccCCCcEEEE
Confidence            3569999998 9999999999998886 6999999988  7899999999753  22222221 234 588999999999


Q ss_pred             ccCCCCCCCCc-----hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          116 PAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       116 tag~~~k~g~~-----r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      ++|.++++|++     |+|++..|++++++++++|+++||+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        78 tag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~~~sg~p~~rViG~  149 (150)
T d1t2da1          78 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL  149 (150)
T ss_dssp             CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             ecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH----HHHHCCCchheecc
Confidence            99999999875     999999999999999999999999999999999999999765    77889999999997

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.98  E-value=4e-33  Score=229.96  Aligned_cols=139  Identities=34%  Similarity=0.592  Sum_probs=122.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADi  112 (279)
                      .+.+||+|||| |.||+++|+.|++.++ .||+|+|+++  ++|+++|+.|...    ...+..   +++++++++|||+
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~adi   79 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADC   79 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEec---cCchhhhhcCCCe
Confidence            34679999998 9999999999998886 4899999988  7899999999642    222322   3467789999999


Q ss_pred             EEEccCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          113 VIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       113 VIitag~~~k~g~-----~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      ||+++|.++++|+     +|.+++..|++++++++++|.++||+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~----~~~sg~p~~rViG~  154 (154)
T d1pzga1          80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGM  154 (154)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHhCcChhcEecC
Confidence            9999999999985     8999999999999999999999999999999999999999765    67789999999996

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=2.6e-32  Score=222.17  Aligned_cols=134  Identities=28%  Similarity=0.523  Sum_probs=111.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +||+|||+ |.||+++|+.|+++++. |++|+|+++  ++++++|+.|...    ..++..   ++| +++++|||+||+
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~---~~d-~~~~~~advvvi   75 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNN-YADTANSDVIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEe---cCc-HHHhcCCCEEEE
Confidence            59999998 99999999999998875 899999988  6899999999852    233433   346 478999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      +||.|+++|++|.|++..|++++++++++|.+++|+++++++|||+|+|||++    |+.+|||++||||
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~----~~~sglp~~rViG  141 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIG  141 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999875    6778999999998

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=6.7e-31  Score=216.40  Aligned_cols=143  Identities=22%  Similarity=0.390  Sum_probs=117.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCCc----hhHHhhhhcccCCCeEEEEeCCCCHHhhhCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTG  109 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~-----~ev~L~D~~~~----~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~  109 (279)
                      .+++||+||||+|+||+++++.|++++++     .+++|+|+++.    ++..+|+.+... +....+...++.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccc-ccccccccCcccccccCC
Confidence            36789999998899999999999887654     48999999873    344455566542 333322223466899999


Q ss_pred             CCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc-eEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeee
Q 023671          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  186 (279)
Q Consensus       110 ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a-~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~  186 (279)
                      +|+||+++|.|+++|++|.|++..|++++++++++|.+++|+. ++|++|||+|+||+++    ++.+ |+|++||+||
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~----~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH----HHHcCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999999865 6788999999999765    6666 9999999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.6e-30  Score=212.87  Aligned_cols=142  Identities=26%  Similarity=0.464  Sum_probs=118.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~e-----v~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A  110 (279)
                      +++||+||||+|+||+++++.|++++++++     +.|+|.+.    ..+.++|+.+... +..+.+..+++.+++++||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchhhhcccc
Confidence            578999999889999999999999987654     45666554    4567788888753 3333333334567999999


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      |+||+|+|.++++|++|.|++..|++++++++++|.+++| +++++++|||+|+||+++   +++++|||++|||.
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            9999999999999999999999999999999999999985 799999999999999875   34568999999984

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=4.2e-30  Score=215.86  Aligned_cols=143  Identities=22%  Similarity=0.325  Sum_probs=122.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A  110 (279)
                      ++.||+|+||+|+||+++++.|++.+++.     +|+|+|+++    ++|.++|+.|... +.+.....+++.+++++|+
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~~~~~~~~~~a  101 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVFEDV  101 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-ccccCccccccchhhccCC
Confidence            45699999999999999999999876543     899999877    4688899999864 3333333345678999999


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      |+||+++|.|+++|++|.|++..|++++++++++|.+++| +++|+++|||+|++|+++   +++++++|++||+||
T Consensus       102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999997 789999999999999875   244689999999986

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=1.2e-27  Score=199.67  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=110.4

Q ss_pred             CcEEEEEcCCCchHHHHH--HHHHhCCC--CcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCC
Q 023671           41 GFKVAILGAAGGIGQPLA--MLMKINPL--VSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la--~~L~~~~~--~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~A  110 (279)
                      ++||+|||| |++|.+.+  ..++....  ..||+|+|+++  .+++++|+.|..    ...+++... ++|++++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~-~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL-TLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee-cCCchhhcCCC
Confidence            369999999 99886543  34444332  46999999988  568888887642    123333322 45778999999


Q ss_pred             CEEEEccCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHH
Q 023671          111 DLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  170 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~--------------------~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~  170 (279)
                      |+||+|+|.+++++++|+|+                    +.+|++++++++++|+++||++|++++|||+|+||+.+  
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~--  156 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV--  156 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH--
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH--
Confidence            99999999998888777766                    46899999999999999999999999999999999755  


Q ss_pred             HHHHhCCCCCCCeeeec
Q 023671          171 VFKKAGTYDPKKLLGVT  187 (279)
Q Consensus       171 ~~~~~~~~~~~kViG~t  187 (279)
                        ++.  +|++||||+|
T Consensus       157 --~k~--~p~~kviGlC  169 (169)
T d1s6ya1         157 --LRY--TKQEKVVGLC  169 (169)
T ss_dssp             --HHH--CCCCCEEECC
T ss_pred             --HHH--CCCCCEEeeC
Confidence              555  5889999997

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=2.5e-26  Score=191.26  Aligned_cols=137  Identities=19%  Similarity=0.205  Sum_probs=107.7

Q ss_pred             CCcEEEEEcCCCchHHHHHH-HHH-hCC--CCcEEEEEeCCC--chhHHhhhhccc--CCCeEEEEeCCCCHHhhhCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAM-LMK-INP--LVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~-~L~-~~~--~~~ev~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~~~d~~eal~~AD  111 (279)
                      +..||+|||| |++|.+.+. .++ ...  ..+||+|+|+++  +++.+.++.+..  .....+... ++|++++++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-TTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-ESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe-cCChhhccCCCC
Confidence            4579999999 999987654 332 222  247999999998  566667766643  122233222 357889999999


Q ss_pred             EEEEccCCCCCCCCchhhHHH--------------------hhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHH
Q 023671          112 LVIIPAGVPRKPGMTRDDLFN--------------------INAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  171 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~--------------------~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~  171 (279)
                      +||+++|.++++|++|.+++.                    +|+++++++++.|+++||+||++++|||+|+||+.+   
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~---  156 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT---  156 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH---
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH---
Confidence            999999999999999888754                    579999999999999999999999999999999765   


Q ss_pred             HHHhCCCCCCCee
Q 023671          172 FKKAGTYDPKKLL  184 (279)
Q Consensus       172 ~~~~~~~~~~kVi  184 (279)
                       ++.  +|++|||
T Consensus       157 -~k~--~P~~rVI  166 (167)
T d1u8xx1         157 -RRL--RPNSKIL  166 (167)
T ss_dssp             -HHH--STTCCEE
T ss_pred             -HHH--CCccccc
Confidence             554  6999997

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=6.5e-27  Score=193.91  Aligned_cols=137  Identities=16%  Similarity=0.254  Sum_probs=103.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC----CCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN----PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~----~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      |||+|||| |++|.+.++..+..    ...+||+|+|+++ ..+.+.|+.|........... +++.+++++|||+||+|
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            69999999 99999988644322    2357999999998 334556776653222223222 34668999999999999


Q ss_pred             cCCCCCCCCchhhHHHh--------------------hHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhC
Q 023671          117 AGVPRKPGMTRDDLFNI--------------------NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  176 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~--------------------N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~  176 (279)
                      +|.+++++++|.+++..                    +++.++++.+ +.++||++|++++|||+|++|+.+    ++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~----~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV----RNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH----HHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH----HHh-
Confidence            99998888888766544                    5566666655 778899999999999999999654    665 


Q ss_pred             CCCCCCeeeec
Q 023671          177 TYDPKKLLGVT  187 (279)
Q Consensus       177 ~~~~~kViG~t  187 (279)
                       +|++||+|+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5789999997

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.2e-24  Score=181.60  Aligned_cols=137  Identities=20%  Similarity=0.181  Sum_probs=105.0

Q ss_pred             CCcEEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEeCCC--chhHHhhhhccc--CCCeEEEEeCCCCHHhhhCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~--~L~~~-~~-~~ev~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~~~d~~eal~~AD  111 (279)
                      +.|||+|||| |++|++.+.  .++.. .+ ..||+|+|+++  +++.+.|+.|..  .....+... ++|++++++|||
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~-~td~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK-TMNLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTCS
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE-eCChhhcccCCC
Confidence            4689999999 999988654  34433 32 36999999998  677788888753  122333322 458899999999


Q ss_pred             EEEEccCC------------------CCCCCCchhhH--------HHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671          112 LVIIPAGV------------------PRKPGMTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  165 (279)
Q Consensus       112 iVIitag~------------------~~k~g~~r~d~--------~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t  165 (279)
                      +||+++++                  +++++++|.|+        +.+|+++++++++.|+++||++|++++|||+|+||
T Consensus        79 ~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t  158 (171)
T d1obba1          79 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT  158 (171)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHH
T ss_pred             eEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHH
Confidence            99998764                  34456666654        56899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCeee
Q 023671          166 PIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       166 ~~~~~~~~~~~~~~~~kViG  185 (279)
                      +.+    ++.+++   |+||
T Consensus       159 ~~~----~k~~~~---k~iG  171 (171)
T d1obba1         159 TLV----TRTVPI---KAVG  171 (171)
T ss_dssp             HHH----HHHSCS---EEEE
T ss_pred             HHH----HHhcCC---CccC
Confidence            754    666654   8887

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.77  E-value=3.2e-19  Score=147.64  Aligned_cols=92  Identities=61%  Similarity=0.857  Sum_probs=84.6

Q ss_pred             ecchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       186 ~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      +|.|||+|||++||++|+++|++|+++|+||||+++++|+||++.+++.++.++++++.++++++|++|++.|++++++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999877999999999988889999999999999999999999998778888


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      ++++.++++++.
T Consensus        81 ~~~~~a~~~~~~   92 (169)
T d1mlda2          81 LSMAYAGARFVF   92 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877654

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.75  E-value=5e-19  Score=145.92  Aligned_cols=88  Identities=28%  Similarity=0.464  Sum_probs=81.1

Q ss_pred             chhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC-----CCHHHHHHHHHHHHhhHHHHHhhhcCCC
Q 023671          188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (279)
Q Consensus       188 ~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~-----~~~~~~~~i~~~v~~~~~~i~~~k~g~g  262 (279)
                      +||++||+++||+++|++|.+|+++||||||+ +++|+||++++++.     ++++.++++.++++++|++|++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            69999999999999999999999999999999 99999999999752     567778899999999999999876 789


Q ss_pred             cchHHHHHHHHHHHh
Q 023671          263 SATLSMRLNLRMHAS  277 (279)
Q Consensus       263 s~~~s~A~a~~~~~~  277 (279)
                      |+.+++|.+++++++
T Consensus        81 sa~~a~~~~~~~~~~   95 (163)
T d1guza2          81 SAFYAPASSVVEMVE   95 (163)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHH
Confidence            999999999999875

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.1e-18  Score=140.48  Aligned_cols=91  Identities=64%  Similarity=0.887  Sum_probs=82.3

Q ss_pred             ecchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          186 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       186 ~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      +|.||++||++++|+++|++|++|+++|+||||+++++|++|++.. ..+++.+++++.+++|++|++|++.|.|++++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            3789999999999999999999999999999999788887777654 357888899999999999999999998899999


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      +|+|.+++++++
T Consensus        80 ~~~a~a~~~~~~   91 (167)
T d2cmda2          80 LSMGQAAARFGL   91 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988865

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.73  E-value=1.4e-18  Score=143.33  Aligned_cols=88  Identities=25%  Similarity=0.375  Sum_probs=81.0

Q ss_pred             chhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----CCCHHHHHHHHHHHHhhHHHHHhhhcCCC
Q 023671          188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAG  262 (279)
Q Consensus       188 ~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~g~g  262 (279)
                      .||++||++++|++||++|.+|+++||||||+ +++|+||++++++     .+++..++++.++++++|++|++.+ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            59999999999999999999999999999998 9999999999964     2466778999999999999999876 789


Q ss_pred             cchHHHHHHHHHHHh
Q 023671          263 SATLSMRLNLRMHAS  277 (279)
Q Consensus       263 s~~~s~A~a~~~~~~  277 (279)
                      |+.+++|.+++++++
T Consensus        81 s~~~a~a~a~~~i~~   95 (164)
T d1uxja2          81 SAYYAPAAATAQMVE   95 (164)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHH
Confidence            999999999999875

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.73  E-value=3.1e-18  Score=141.74  Aligned_cols=87  Identities=16%  Similarity=0.313  Sum_probs=77.7

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-------------CCCHHHHHHHHHHHHhhHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-------------SFTQEETEYLTNRIQNGGTE  253 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-------------~~~~~~~~~i~~~v~~~~~~  253 (279)
                      |.||++||+++||+++|+++++|+++|||+||+ ++||+||++++++             .++...++++.++++++|++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            689999999999999999999999999999999 9999999998853             13455678999999999999


Q ss_pred             HHhhhcCCCcchHHHHHHHHHHHh
Q 023671          254 VVEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       254 i~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      |++.   ||++.+++|.+++++++
T Consensus        80 i~~~---kg~t~~~~a~~~~~~~~  100 (170)
T d1llda2          80 IING---KGATNYAIGMSGVDIIE  100 (170)
T ss_dssp             HHTS---CCSCCHHHHHHHHHHHH
T ss_pred             HHhh---hccchhhhHHHHHHHHH
Confidence            9985   47889999999998875

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.72  E-value=3.1e-18  Score=142.31  Aligned_cols=89  Identities=29%  Similarity=0.445  Sum_probs=78.6

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  256 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~  256 (279)
                      |+||++||+++||+++|++|++|+++||||||+ ++||+||++++++          .....++.++..+.+.+|.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            789999999999999999999999999999999 9999999999864          13445567788888888989888


Q ss_pred             hhcCCCcchHHHHHHHHHHHh
Q 023671          257 AKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       257 ~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      .+ ++||+.+++|.+++++++
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~  100 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMAT  100 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHH
Confidence            76 789999999999999864

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.70  E-value=9.4e-18  Score=141.41  Aligned_cols=88  Identities=22%  Similarity=0.202  Sum_probs=76.2

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcc-eeecCCCCceeeeecccCCCCCC-----CCHHH--HHHHHHHHHhhHHHHHhhh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVVEAK  258 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~-~ViGehg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~~~~i~~~k  258 (279)
                      |.||++|||++||+++|++|++|+. +||||||+ ++||+||++++++.     +.+++  ++++.+.+++++++|++.|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            6799999999999999999999985 58899999 99999999999651     33333  4799999999999999987


Q ss_pred             cCCCcchHHHHHHHHHHHh
Q 023671          259 AGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       259 ~g~gs~~~s~A~a~~~~~~  277 (279)
                        ++++++|+|.|++++++
T Consensus        80 --g~s~~~s~A~A~~~~~~   96 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIK   96 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHH
T ss_pred             --cccchhhHHHHHHHHHH
Confidence              35778899999999875

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.70  E-value=1e-17  Score=138.53  Aligned_cols=87  Identities=20%  Similarity=0.333  Sum_probs=79.2

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  256 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~  256 (279)
                      |.||++||+++||+++|++|++|+++|||+||+ ++||+||++++.+          .++.++++++.++++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            679999999999999999999999999999998 9999999999864          25677788999999999999998


Q ss_pred             hhcCCCcchHHHHHHHHHHHh
Q 023671          257 AKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       257 ~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +|   +++.+++|.+++++++
T Consensus        80 ~k---~s~~~a~a~~~~~~~~   97 (171)
T d1ez4a2          80 LK---GATFYGIGTALMRISK   97 (171)
T ss_dssp             HH---SCCCHHHHHHHHHHHH
T ss_pred             hh---hhHhHHHHHHHHHHHH
Confidence            65   6899999999999875

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.70  E-value=7.9e-18  Score=138.27  Aligned_cols=87  Identities=24%  Similarity=0.314  Sum_probs=75.8

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC-----CC--HHHHHHHHHHHHhhHHHHHhhhc
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FT--QEETEYLTNRIQNGGTEVVEAKA  259 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~-----~~--~~~~~~i~~~v~~~~~~i~~~k~  259 (279)
                      |.||++||+++||+++|++|++|+++|||+||+ ++||+||++++++.     +.  +..++++.+++++++++|++.| 
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k-   79 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK-   79 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH-
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHH-
Confidence            679999999999999999999999999999999 99999999998641     22  2346899999999999999865 


Q ss_pred             CCCcchHHHHHHHHHHHh
Q 023671          260 GAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       260 g~gs~~~s~A~a~~~~~~  277 (279)
                        |++.+++|.++.++++
T Consensus        80 --g~~~~~~a~~~~~~~~   95 (163)
T d1hyha2          80 --GYTSYGVATSAIRIAK   95 (163)
T ss_dssp             --SSCCHHHHHHHHHHHH
T ss_pred             --HhHHHhHHHHhhHHHH
Confidence              6789999999988765

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.70  E-value=7.4e-18  Score=140.82  Aligned_cols=88  Identities=25%  Similarity=0.285  Sum_probs=75.9

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceee-cCCCCceeeeecccCCCCC-C----------CCHHHHHHHHHHHHhhHHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVV-GGHAGVTILPLLSQVKPPC-S----------FTQEETEYLTNRIQNGGTEV  254 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~Vi-Gehg~~~~vp~~S~~~v~~-~----------~~~~~~~~i~~~v~~~~~~i  254 (279)
                      |.||++|||++||+++|++|++|+++|+ |+||+ ++||+||++++++ +          .+....+++.+++++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6799999999999999999999998755 99999 9999999999864 1          22234578999999999999


Q ss_pred             HhhhcCCCcchHHHHHHHHHHHh
Q 023671          255 VEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       255 ~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      ++.|  ++++++++|.|++++++
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~  100 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVR  100 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHH
Confidence            9977  36788999999999875

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.68  E-value=2.6e-17  Score=134.02  Aligned_cols=81  Identities=16%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCC-cceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  265 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V-~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~  265 (279)
                      |.|||+|||++|++.+   +.++ +++|+||||+ ++||+||.+++.+..   ++++|.+++|++|++|+++|   |+|+
T Consensus         2 t~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGd-s~vp~~S~~~i~g~~---~~~~i~~~v~~~g~eIi~~k---G~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAG---ARNIRRAWIIGEHGD-SMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIKRK---GATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTT---CBSCCCCCEEBCSST-TCEECGGGCCCBSCC---CHHHHHHHHHTTHHHHHHHH---SSCC
T ss_pred             CccHHHHHHHHHHccC---CCCcceeEEEecCCC-ccccccccccccCcc---chhHhHHHHHHHHHHhhhhc---ccee
Confidence            6799999999997765   4455 8999999999 999999999986533   46789999999999999966   6899


Q ss_pred             HHHHHHHHHHHh
Q 023671          266 LSMRLNLRMHAS  277 (279)
Q Consensus       266 ~s~A~a~~~~~~  277 (279)
                      |++|.+++++++
T Consensus        72 ~gia~a~~~iv~   83 (152)
T d1ojua2          72 FGPAVAIYRMVK   83 (152)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH
Confidence            999999999986

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=2.5e-17  Score=136.29  Aligned_cols=87  Identities=25%  Similarity=0.404  Sum_probs=77.4

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----------CCCHHHHHHHHHHHHhhHHHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVV  255 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~~~~i~  255 (279)
                      |.||++||+++||+++|++|.+|+++|||+||+ +++|+||++++++           .++.+.++++.++++.++++|+
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            689999999999999999999999999999999 9999999999853           2556667899999999999999


Q ss_pred             hhhcCCCcchHHHHHHHHHHHh
Q 023671          256 EAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       256 ~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +.|   +++.+++|.++++++.
T Consensus        81 ~~~---~~~~~~~a~a~~~~~~   99 (172)
T d1a5za2          81 ERK---GATHYAIALAVADIVE   99 (172)
T ss_dssp             HHH---SCCCHHHHHHHHHHHH
T ss_pred             ecc---ccchhhHHHHHHHHHH
Confidence            865   6788899999888764

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.68  E-value=1.4e-17  Score=137.76  Aligned_cols=87  Identities=24%  Similarity=0.480  Sum_probs=75.4

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC------------CCHHHHHHHHHHHHhhHHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------FTQEETEYLTNRIQNGGTEV  254 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~~~~i  254 (279)
                      |.||++||+++||+++|++|++|+++|||+||+ +++|+||++++++.            +++++++++.++++++++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            679999999999999999999999999999999 99999999998631            23445689999999999999


Q ss_pred             HhhhcCCCcchHHHHHHHHHHHh
Q 023671          255 VEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       255 ~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      ++.|   +++.+++|.+++++++
T Consensus        80 ~~~~---~s~~~a~a~~~~~~~~   99 (169)
T d1y6ja2          80 IKNK---GATYYGIAVSINTIVE   99 (169)
T ss_dssp             HHHT---SCCCHHHHHHHHHHHH
T ss_pred             hhhh---hhhhhHHHHHHHHHHH
Confidence            9854   7899999999998875

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.67  E-value=4.9e-17  Score=132.64  Aligned_cols=89  Identities=22%  Similarity=0.372  Sum_probs=79.0

Q ss_pred             eeecchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC---CCCHHHHHHHHHHHHhhHHHHHhhhcC
Q 023671          184 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC---SFTQEETEYLTNRIQNGGTEVVEAKAG  260 (279)
Q Consensus       184 iG~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~---~~~~~~~~~i~~~v~~~~~~i~~~k~g  260 (279)
                      || |+||++||+++||+++|++|++|+++|||+||+ +++|+||++++.+   ....++++++.++++..++++++.+  
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--   76 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK--   76 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHHhh--
Confidence            46 899999999999999999999999999999999 9999999999853   3567778899999999999998854  


Q ss_pred             CCcchHHHHHHHHHHHh
Q 023671          261 AGSATLSMRLNLRMHAS  277 (279)
Q Consensus       261 ~gs~~~s~A~a~~~~~~  277 (279)
                       +++.+++|.+++++.+
T Consensus        77 -~~s~~~~a~a~~~~~~   92 (161)
T d1o6za2          77 -GATEWGPARGVAHMVE   92 (161)
T ss_dssp             -SSCCHHHHHHHHHHHH
T ss_pred             -hhhhhHHHHhhHhhhH
Confidence             6788899999888764

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.64  E-value=1.3e-16  Score=131.29  Aligned_cols=86  Identities=23%  Similarity=0.342  Sum_probs=76.8

Q ss_pred             chhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhh
Q 023671          188 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  257 (279)
Q Consensus       188 ~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~  257 (279)
                      .||++||+++||+++|++|++|+++|||+||+ +++|+||++++++          ...+++++++.+.++++++++++.
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            68999999999999999999999999999998 9999999998753          245667889999999999999986


Q ss_pred             hcCCCcchHHHHHHHHHHHh
Q 023671          258 KAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       258 k~g~gs~~~s~A~a~~~~~~  277 (279)
                      |   +++.+++|.+++++++
T Consensus        81 ~---~~~~~a~a~a~~~~~~   97 (165)
T d1t2da2          81 H---ASPYVAPAAAIIEMAE   97 (165)
T ss_dssp             T---SSCCHHHHHHHHHHHH
T ss_pred             c---cceeechhHHHHHHHH
Confidence            5   6788999999998875

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.64  E-value=1.1e-16  Score=132.33  Aligned_cols=87  Identities=21%  Similarity=0.266  Sum_probs=76.5

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC------------CCHHHHHHHHHHHHhhHHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------FTQEETEYLTNRIQNGGTEV  254 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~~~~i  254 (279)
                      |.||++||+++||+++|++|++|+++|||+||+ ++||+||++++++.            .+...++++.++++.+++++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            689999999999999999999999999999999 99999999998641            22344689999999999999


Q ss_pred             HhhhcCCCcchHHHHHHHHHHHh
Q 023671          255 VEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       255 ~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      ++.|   +++.+++|.+++++++
T Consensus        82 ~~~~---~~s~~a~a~~~~~~~~  101 (172)
T d1i0za2          82 IKLK---GYTNWAIGLSVADLIE  101 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHH
T ss_pred             eecc---cccchHHHHHHHHHHH
Confidence            9865   6788999999998875

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.62  E-value=2.4e-17  Score=136.51  Aligned_cols=87  Identities=20%  Similarity=0.329  Sum_probs=75.1

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC-----------CCHHHHHHHHHHHHhhHHHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----------FTQEETEYLTNRIQNGGTEVV  255 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~~~~i~  255 (279)
                      |.||++||+++||+++|+++++|+++|||+||+ +++|+||++++++.           +....++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            679999999999999999999999999999999 99999999988541           122335678889999999998


Q ss_pred             hhhcCCCcchHHHHHHHHHHHh
Q 023671          256 EAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       256 ~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      ++   +|++.+++|.+++++++
T Consensus        80 ~~---kg~~~~a~a~~~~~~~~   98 (172)
T d1llca2          80 KL---KGATFYGIATALARISK   98 (172)
T ss_dssp             SS---SSCTTHHHHHHHHHHHH
T ss_pred             Hh---hhhhhhhhHHHHHHHHH
Confidence            84   57899999999988765

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.62  E-value=2.2e-16  Score=129.70  Aligned_cols=87  Identities=23%  Similarity=0.385  Sum_probs=74.3

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC-----------CCHHHHHHHHHHHHhhHHHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----------FTQEETEYLTNRIQNGGTEVV  255 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~~~~i~  255 (279)
                      |.||++||+++||+++|++|++|+++|||+||+ ++||+||++++++.           .....++++.+.++.++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            679999999999999999999999999999999 99999999998531           112335789999999999998


Q ss_pred             hhhcCCCcchHHHHHHHHHHHh
Q 023671          256 EAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       256 ~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +.|   +++.++++.++.++++
T Consensus        80 ~~~---~~s~~~~a~~~~~~~~   98 (168)
T d1ldna2          80 EKK---GATYYGIAMGLARVTR   98 (168)
T ss_dssp             HHH---SCCCHHHHHHHHHHHH
T ss_pred             Hhh---ccccchHHHHHhhHHH
Confidence            865   6788899998887764

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=6.9e-17  Score=133.08  Aligned_cols=87  Identities=20%  Similarity=0.369  Sum_probs=69.3

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC----C---CHHHHHHHHHHHHhhHHHHHhhhc
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----F---TQEETEYLTNRIQNGGTEVVEAKA  259 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~----~---~~~~~~~i~~~v~~~~~~i~~~k~  259 (279)
                      |.||++||++++|++||++|++|+++|||+||+ ++||+||++++++.    +   ....++++.++++++++++++.| 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-   80 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK-   80 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHhc-
Confidence            789999999999999999999999999999999 99999999998641    1   12235789999999999998865 


Q ss_pred             CCCcchHHHHHHHHHHHh
Q 023671          260 GAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       260 g~gs~~~s~A~a~~~~~~  277 (279)
                        +++.+++|.+++++++
T Consensus        81 --~~~~~~~a~~~~~~~~   96 (168)
T d1hyea2          81 --GGSEFGPAAAILNVVR   96 (168)
T ss_dssp             ------CCHHHHHHHHHH
T ss_pred             --cCccccchhhhhHHHH
Confidence              5666788887777654

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.5e-15  Score=125.11  Aligned_cols=87  Identities=24%  Similarity=0.390  Sum_probs=74.4

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C-----------CCHHHHHHHHHHHHhhHHHH
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S-----------FTQEETEYLTNRIQNGGTEV  254 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~-----------~~~~~~~~i~~~v~~~~~~i  254 (279)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||++++++ +           ....+.+++.+.++..++++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            689999999999999999999999999999999 9999999999864 1           11223468999999999999


Q ss_pred             HhhhcCCCcchHHHHHHHHHHHh
Q 023671          255 VEAKAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       255 ~~~k~g~gs~~~s~A~a~~~~~~  277 (279)
                      +..|   +++.+++|.++++++.
T Consensus        82 ~~~k---~~s~~~~a~~~~~~~~  101 (172)
T d2ldxa2          82 LDMK---GYTSWAIGLSVTDLAR  101 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHH
T ss_pred             hhcc---cchhHHHHHHHhHHHH
Confidence            8865   5788999999988764

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=1.3e-15  Score=125.87  Aligned_cols=89  Identities=21%  Similarity=0.253  Sum_probs=70.7

Q ss_pred             ecchhHHHHHHHHHHHcCCCCCCCcce-eecCCCCceeeeecccCCCCCC----C-CHH-HHHHHHHHHHhhHHHHHhhh
Q 023671          186 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPCS----F-TQE-ETEYLTNRIQNGGTEVVEAK  258 (279)
Q Consensus       186 ~t~lds~R~~~~la~~l~v~~~~V~~~-ViGehg~~~~vp~~S~~~v~~~----~-~~~-~~~~i~~~v~~~~~~i~~~k  258 (279)
                      +|.||++|||++||+++|++|++|+++ |||+||+ +++|+||++++++.    + .+. ..+++.++....+.+++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            478999999999999999999999987 5699999 99999999999751    2 222 23455656666666776654


Q ss_pred             cCCCcchHHHHHHHHHHHh
Q 023671          259 AGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       259 ~g~gs~~~s~A~a~~~~~~  277 (279)
                        ++++++++|.+++++++
T Consensus        80 --~~~s~~~~a~a~~~~~~   96 (173)
T d1y7ta2          80 --GASSAASAANAAIEHIR   96 (173)
T ss_dssp             --SSCCHHHHHHHHHHHHH
T ss_pred             --ccCchhhHHHHHHHHHH
Confidence              46788999999999875

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.57  E-value=8.7e-16  Score=126.32  Aligned_cols=87  Identities=20%  Similarity=0.267  Sum_probs=73.5

Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC---------CCHHHHHHHHHHHHhhHHHHHhh
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS---------FTQEETEYLTNRIQNGGTEVVEA  257 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~---------~~~~~~~~i~~~v~~~~~~i~~~  257 (279)
                      |.||++||+++||++||++|++|+++|||+||+ +++|+||++++++.         .....+.++.++++.++++++..
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL   81 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEecc
Confidence            689999999999999999999999999999999 89999999998641         12233457777888888888875


Q ss_pred             hcCCCcchHHHHHHHHHHHh
Q 023671          258 KAGAGSATLSMRLNLRMHAS  277 (279)
Q Consensus       258 k~g~gs~~~s~A~a~~~~~~  277 (279)
                      |   +++.+++|.+++++++
T Consensus        82 ~---~s~~~a~a~~~~~~~~   98 (169)
T d1ldma2          82 K---GYTSWAIGLSVADLAE   98 (169)
T ss_dssp             H---SSCCHHHHHHHHHHHH
T ss_pred             c---cchhhHHHHHHhhhhh
Confidence            4   6788999999988875

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.43  E-value=1e-13  Score=114.05  Aligned_cols=86  Identities=17%  Similarity=0.229  Sum_probs=66.2

Q ss_pred             chhHHHHHHHHHHHcCCCCCCCcc-eeecCCCCceeeeecccCCCCCC-----CCHH--HHHHHHHHHHhhHHHHHhhhc
Q 023671          188 MLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPCS-----FTQE--ETEYLTNRIQNGGTEVVEAKA  259 (279)
Q Consensus       188 ~lds~R~~~~la~~l~v~~~~V~~-~ViGehg~~~~vp~~S~~~v~~~-----~~~~--~~~~i~~~v~~~~~~i~~~k~  259 (279)
                      .||++|||++||+++|++|++|++ +|||+||+ +++|+||++++.+.     ..+.  ..+++.+.+++++..+++.+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            489999999999999999999986 57799999 99999999998642     1112  23567778888888888876 


Q ss_pred             CCCcchHHHHHHHHHH
Q 023671          260 GAGSATLSMRLNLRMH  275 (279)
Q Consensus       260 g~gs~~~s~A~a~~~~  275 (279)
                      +++++.++.+.++..+
T Consensus        80 ~~~~~~~~~~a~~~~~   95 (171)
T d1b8pa2          80 GVSSAASAANAAIDHI   95 (171)
T ss_dssp             SSCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHH
Confidence            5556655555555544

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.8e-09  Score=88.84  Aligned_cols=120  Identities=15%  Similarity=0.213  Sum_probs=82.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hh----hhhcccC--------------CCeEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DISHMDT--------------GAVVRGF   97 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~----DL~~~~~--------------~~~v~~~   97 (279)
                      .+||+|||| |.+|+.+|..++..|+  +|+++|+++ .  .+.  ..    .+.....              ..++.. 
T Consensus         4 IkkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-   79 (192)
T d1f0ya2           4 VKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-   79 (192)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-
T ss_pred             eEEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-
Confidence            469999999 9999999999999999  999999987 1  111  00    0110000              013443 


Q ss_pred             eCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCC
Q 023671           98 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  177 (279)
Q Consensus        98 ~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~  177 (279)
                        ++|+.+++++||+|+.++              .+|.++.+++...+++++|...+ +.||...+-..   +. .... 
T Consensus        80 --~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~i-lasnTS~l~i~---~l-a~~~-  137 (192)
T d1f0ya2          80 --STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTI-FASNTSSLQIT---SI-ANAT-  137 (192)
T ss_dssp             --ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCE-EEECCSSSCHH---HH-HTTS-
T ss_pred             --cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCce-eeccCcccccc---hh-hhhc-
Confidence              357788999999999986              35789999999999999864433 36887765432   22 2223 


Q ss_pred             CCCCCeeee
Q 023671          178 YDPKKLLGV  186 (279)
Q Consensus       178 ~~~~kViG~  186 (279)
                      -.|+|++|+
T Consensus       138 ~~p~r~ig~  146 (192)
T d1f0ya2         138 TRQDRFAGL  146 (192)
T ss_dssp             SCGGGEEEE
T ss_pred             cCHhHEEee
Confidence            345788887

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.89  E-value=8.1e-09  Score=86.31  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--h----hHH-------hh-hhcccCCCeEEEEeCCCCHHhhh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P----GVT-------AD-ISHMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~----g~~-------~D-L~~~~~~~~v~~~~~~~d~~eal  107 (279)
                      |||+|||+ |+||.++|..|+..|+  +|+.+|+++.  +    |..       .+ +.......++..   ++|+.+++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~~i   74 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKKAV   74 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHHHH
Confidence            79999998 9999999999999998  9999999861  1    100       01 111111223343   35788999


Q ss_pred             CCCCEEEEccCCCCCCC-CchhhHHHhhHHHHHHHHHHHHHhCCCceEEE-ecCCCCchHHHHHHHHHHhCCCC
Q 023671          108 TGMDLVIIPAGVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVFKKAGTYD  179 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv-~TNPvd~~t~~~~~~~~~~~~~~  179 (279)
                      ++||+++++.+.|.... ......+   ..+.+.+.+.++...++..+++ .|-|......+...++.+.++..
T Consensus        75 ~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~  145 (202)
T d1mv8a2          75 LDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKK  145 (202)
T ss_dssp             HTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCC
T ss_pred             hhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccc
Confidence            99999999999885432 2222221   2344445555554556665544 46777766655444444444433

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.84  E-value=9.2e-10  Score=91.33  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=80.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hh--HHh----hhhccc---------CCCeEEEEeCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTA----DISHMD---------TGAVVRGFLGQPQ  102 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g--~~~----DL~~~~---------~~~~v~~~~~~~d  102 (279)
                      .+||+|||| |.+|+.+|..++..|+  +|+++|+++ .  .+  ...    ++....         ...++..   +++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~   77 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TLS   77 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---ccc
Confidence            358999999 9999999999999999  999999986 1  11  111    111110         0112443   234


Q ss_pred             HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCC
Q 023671          103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  182 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~k  182 (279)
                       .+++.+||+||.++              .+|.++.+++..+|++++|...+ ++||...+...-   + ..... .|+|
T Consensus        78 -~~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~I-iaSnTS~l~i~~---l-a~~~~-~p~r  136 (186)
T d1wdka3          78 -YGDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAI-LASNTSTISISL---L-AKALK-RPEN  136 (186)
T ss_dssp             -STTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCE-EEECCSSSCHHH---H-GGGCS-CGGG
T ss_pred             -cccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCee-EEeccccccHHH---H-HHhcc-Cchh
Confidence             46799999999986              35789999999999999964433 368877755422   2 22232 3567


Q ss_pred             eeee
Q 023671          183 LLGV  186 (279)
Q Consensus       183 ViG~  186 (279)
                      ++|+
T Consensus       137 ~~g~  140 (186)
T d1wdka3         137 FVGM  140 (186)
T ss_dssp             EEEE
T ss_pred             eEee
Confidence            7776

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.6e-08  Score=87.84  Aligned_cols=169  Identities=12%  Similarity=0.055  Sum_probs=101.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      +||.|+||+|++|++++..|+.+|+  +|+.+|.... +....+.+......+.... .+.++.++.++|+||++|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFT-GRKRNVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSS-CCGGGTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCc-CCHHHHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccCC
Confidence            5999999999999999999999998  9999996431 1111122221222333322 1223456789999999997542


Q ss_pred             CC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC-----CCC-chHHHHHHHHHHhCCCCCCCeeeecchhHHH
Q 023671          122 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-----PVN-STVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  193 (279)
Q Consensus       122 k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN-----Pvd-~~t~~~~~~~~~~~~~~~~kViG~t~lds~R  193 (279)
                      .+  ..+..+.+..|+.....+++.+++... .+|+..|.     |.. .+..   .......-+.|...+|.+.+....
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e---~~~~~~~~~~p~~~Y~~sK~~~E~  153 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSE---DYWGHVNPIGPRACYDEGKRVAET  153 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCT---TCCCBCCSSSTTHHHHHHHHHHHH
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCc---cccCCCCCCCCccHHHHHHHHHHH
Confidence            11  123456778899999999999988764 23333331     110 0000   000000112344556666555555


Q ss_pred             HHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          194 ANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       194 ~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      +-...++..|++...++ +.|+|.+.
T Consensus       154 ~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         154 MCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            65666677788888777 55899664

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=3.1e-08  Score=88.03  Aligned_cols=114  Identities=18%  Similarity=0.157  Sum_probs=75.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC---HHhhhC--CCCEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLV  113 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~--~ADiV  113 (279)
                      |||.|+||+||+|++++..|+..|+  +|+++|+..  .......+.+.. ...+..+.+ -.|   +.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999998  999999744  122222222211 112222211 122   344555  78999


Q ss_pred             EEccCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          114 IIPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       114 Iitag~~~k~-g-~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |++|+....+ . ....+.+..|+...+.+++.+++.....+|...|
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss  124 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS  124 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCc
Confidence            9999754211 0 1235678899999999999999988766555444

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.68  E-value=9.7e-08  Score=84.04  Aligned_cols=169  Identities=17%  Similarity=0.177  Sum_probs=107.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC----CCHHhhhCCCCEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV  113 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~----~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~----~d~~eal~~ADiV  113 (279)
                      |||.|+||+|++|++++..|+.+|+    ..++..+|.....+....+........+..+...    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            6999999999999999999998874    4688888876522222222222223344433211    1234457899999


Q ss_pred             EEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC------CchHHHHHHHHHHhCCCCCCCeee
Q 023671          114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       114 Iitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv------d~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      +++|+.+...  .....+.+..|+.....+++.+.++...-+|...|.-+      ..++        +...+.|...+|
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~--------E~~~~~p~~~Y~  152 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWT--------ESSPLEPNSPYA  152 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBC--------TTSCCCCCSHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCC--------CCCCCCCCCHHH
Confidence            9998765322  12234567889999999999999887654444433211      0111        112234455677


Q ss_pred             ecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          186 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       186 ~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .+.+-...+-...++..+++...++ +.|+|.+.
T Consensus       153 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  186 (322)
T d1r6da_         153 ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQ  186 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCC
Confidence            6655455566667788888888887 55889654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.4e-07  Score=78.09  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=68.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiVIi  115 (279)
                      .++||+|+||+|++|++++..|+.+|+  +|.+++++..+.  .+..    ...++.+.+    .+++.++++++|+||.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~--~~~~----~~~~~~~~gD~~d~~~l~~al~~~d~vi~   73 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL--PSEG----PRPAHVVVGDVLQAADVDKTVAGQDAVIV   73 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS--CSSS----CCCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhc--cccc----ccccccccccccchhhHHHHhcCCCEEEE
Confidence            467999999999999999999999998  999999875211  1011    111222111    1345678999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  155 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi  155 (279)
                      ++|........     ..+....+.+++.+++..-+-++.
T Consensus        74 ~~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v~r~i~  108 (205)
T d1hdoa_          74 LLGTRNDLSPT-----TVMSEGARNIVAAMKAHGVDKVVA  108 (205)
T ss_dssp             CCCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EeccCCchhhh-----hhhHHHHHHHHHHHHhcCCCeEEE
Confidence            98864322211     234566777888888876444333

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.66  E-value=5.3e-08  Score=86.98  Aligned_cols=173  Identities=15%  Similarity=0.030  Sum_probs=103.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe--CCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~--~~~d~~eal~~ADiVIita  117 (279)
                      +.|||.|+||+||+|++++..|+++|+  +|+.+|..+......++.    ........  ...++.+++++.|.||++|
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcc----cCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            578999999999999999999999998  999999765211111111    11122111  0113345678999999998


Q ss_pred             CCCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHH---HHH---HHHHhCCCCCCCeeeecc
Q 023671          118 GVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI---AAE---VFKKAGTYDPKKLLGVTM  188 (279)
Q Consensus       118 g~~~k~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~---~~~---~~~~~~~~~~~kViG~t~  188 (279)
                      +.....   ..........|+.....++....+.+..-+|...| -...-..-   ..+   .........|...+|.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS-~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK  166 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS-ACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEK  166 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE-GGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCccccccccc-cccccccccccccccccccccCCcCCCCCHHHHHH
Confidence            654321   12234466779999999999998876554443333 11100000   000   000011123445667665


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671          189 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  219 (279)
Q Consensus       189 lds~R~~~~la~~l~v~~~~V~-~~ViGehg~  219 (279)
                      +...++-....+..|++..-++ ..|+|.++.
T Consensus       167 ~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         167 LATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            5555665566677788777777 458887764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.63  E-value=7.5e-08  Score=77.28  Aligned_cols=89  Identities=16%  Similarity=0.176  Sum_probs=60.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |||+|||+ |.+|+++|..|...|+  +|..+|+++. ...+.+..-.    . ..   .++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~~----~-~~---~~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQLV----D-EA---GQD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTSC----S-EE---ESC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhcc----c-ee---eee-cccccccccccccC--c
Confidence            79999998 9999999999999998  9999999762 1122211111    1 11   124 47899999999975  2


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T  158 (279)
                                    ...+.++++++...- |+.+|+..+
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeecc
Confidence                          233556667777664 566665544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.61  E-value=3.6e-08  Score=79.77  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhc--c-cCCCeEEE--EeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISH--M-DTGAVVRG--FLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~--~-~~~~~v~~--~~~~~d~~eal~~ADiVIi  115 (279)
                      +||+|||+ |.+|..+|..|.+.|+  +|.++|+++.. ....+...  . ........  ...++|..+++++||+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999999 9999999999999998  99999997621 11111110  0 00011110  1113467899999999999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  161 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPv  161 (279)
                      +....                ...+++++++.+- ++.+|+..+|..
T Consensus        79 ~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~~  109 (184)
T d1bg6a2          79 VVPAI----------------HHASIAANIASYISEGQLIILNPGAT  109 (184)
T ss_dssp             CSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred             EEchh----------------HHHHHHHHhhhccCCCCEEEEeCCCC
Confidence            86211                2456777778775 566665544443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.59  E-value=5.3e-08  Score=85.20  Aligned_cols=114  Identities=21%  Similarity=0.220  Sum_probs=74.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC----CCHHhhhCCC--CEEEEc
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGM--DLVIIP  116 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~----~d~~eal~~A--DiVIit  116 (279)
                      ||.|+||+||+|++++..|+.+|+  +|+.+|.-...+....+.......+++.+.+.    .++.+++++.  |+||++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence            899999999999999999999998  99999854321111111111112233332211    1344556554  999999


Q ss_pred             cCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          117 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       117 ag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |+......  .+..+....|+...+.+++...+....-.++..|
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            87543221  1235677889999999999999988766665554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.1e-08  Score=81.54  Aligned_cols=113  Identities=19%  Similarity=0.085  Sum_probs=75.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE--EeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+||.|+||+|++|++++..|++++...+|.++++++..........    .....  +....++.++++++|+||+++|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~----i~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN----VNQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG----CEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce----eeeeeeccccccccccccccccccccccc
Confidence            45899999999999999999999897779999998762100000000    01110  1112356778999999999987


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ... ......++...|.....++++...+...+.++.+.|
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss  128 (232)
T d2bkaa1          90 TTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS  128 (232)
T ss_dssp             CCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccc-cccchhhhhhhcccccceeeecccccCccccccCCc
Confidence            542 122345566778889999999888766554444433

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.1e-07  Score=83.36  Aligned_cols=166  Identities=14%  Similarity=0.025  Sum_probs=97.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHhhhhcc--cCCCeEEEEeCC-CC---HHhhhCCC--C
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHM--DTGAVVRGFLGQ-PQ---LENALTGM--D  111 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---g~~~DL~~~--~~~~~v~~~~~~-~d---~~eal~~A--D  111 (279)
                      +|.|+||+||+|++++..|+..|+  +|+.+|+....   .....+.+.  ....+++.+.+. .|   +++.+++.  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            455999999999999999999998  99999985411   111111111  112344443211 12   33455544  9


Q ss_pred             EEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC--CceEEEec------CCCCc-hHHHHHHHHHHhCCCCC
Q 023671          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLIS------NPVNS-TVPIAAEVFKKAGTYDP  180 (279)
Q Consensus       112 iVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p--~a~viv~T------NPvd~-~t~~~~~~~~~~~~~~~  180 (279)
                      +|+++|+.....  ..+....+..|+.....+++.+++.+-  ...+|.+|      +|-+. ++        +...+.|
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~--------E~~~~~P  152 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQK--------ETTPFYP  152 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBC--------TTSCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcC--------CCCCCCC
Confidence            999999864322  233455678899999999999998763  33455544      22211 11        1112334


Q ss_pred             CCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          181 KKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       181 ~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      ...+|.+.+...++-...++..+++..-++ ..|+|...
T Consensus       153 ~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~  191 (357)
T d1db3a_         153 RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (357)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence            566777666555555666777787776666 44788643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=1.6e-07  Score=74.61  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=68.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      |||+|||+ |.+|+.++..|.+.|+  +|.++|+++..................... .++ .+++.++|+||++.... 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT-AND-PDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE-ESC-HHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCccccccccc-cch-hhhhcccceEEEeeccc-
Confidence            79999999 9999999999999998  999999977322211111111111111111 223 57789999999986321 


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCch
Q 023671          122 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  164 (279)
Q Consensus       122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~  164 (279)
                                     -+.+.++.+...- ++..|+...|=++..
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccHH
Confidence                           1445666666554 688888888977654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.49  E-value=3.8e-07  Score=80.90  Aligned_cols=177  Identities=15%  Similarity=0.097  Sum_probs=100.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiVIit  116 (279)
                      ||||.|+||+||||++++..|+..|+--.++.+|.....+....+... ...++..+.+    ...+.+++.+.|.|++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            689999999999999999999988864466677743311111111111 1223333221    12345677999999999


Q ss_pred             cCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCch-----HHHH----HHHHHHhCCCCCCCeee
Q 023671          117 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----VPIA----AEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       117 ag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~-----t~~~----~~~~~~~~~~~~~kViG  185 (279)
                      |+......  .+..+.+..|+.....++....+....-+++..+.--+..     .+.-    .+.........|...+|
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~  160 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS  160 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHH
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHHH
Confidence            87543221  1234677889999999999999887533222212100000     0000    00000011222345567


Q ss_pred             ecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          186 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       186 ~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      .+.+...++-...++..+++..-++ ..|+|.+.
T Consensus       161 ~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         161 STKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            6665555565556677777776666 44888654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.48  E-value=9.9e-08  Score=78.99  Aligned_cols=71  Identities=14%  Similarity=0.257  Sum_probs=52.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhh--ccc--------CCCeEEEEeCCCCHHhhhC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMD--------TGAVVRGFLGQPQLENALT  108 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~--~~~--------~~~~v~~~~~~~d~~eal~  108 (279)
                      ..|+||+|||| |..|+++|..|...++  +|.|+++++.  .+..+.  +..        ...++..   ++|++++++
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~--~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~   76 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEE--EVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYN   76 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHH--HHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHT
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHH--HHHHHhhccccccccccccccccccc---chhhhhccC
Confidence            45668999999 9999999999999987  9999998762  111121  111        1234554   358899999


Q ss_pred             CCCEEEEcc
Q 023671          109 GMDLVIIPA  117 (279)
Q Consensus       109 ~ADiVIita  117 (279)
                      +||+||++.
T Consensus        77 ~ad~iiiav   85 (189)
T d1n1ea2          77 GAEIILFVI   85 (189)
T ss_dssp             TCSCEEECS
T ss_pred             CCCEEEEcC
Confidence            999999975

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.47  E-value=2.5e-07  Score=75.68  Aligned_cols=97  Identities=23%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----C---CCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----T---GAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----~---~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      |||+|||+ |..|+++|..|...++  +|.++.+.........+....    .   ...... ..++|+.+++++||+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEI-FWPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEE-ECGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhccccc-cccccHHHHHhccchhh
Confidence            79999999 9999999999999887  999997643222222232211    0   111222 23567889999999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++...                ..++++++++..+-++..+++.|
T Consensus        77 ~avps----------------~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGVST----------------DGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECSCG----------------GGHHHHHHHHTTTCCSCEEEECC
T ss_pred             cccch----------------hhhHHHHHhhccccccceecccc
Confidence            97621                23566777777776555555543

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.47  E-value=3e-07  Score=82.64  Aligned_cols=175  Identities=15%  Similarity=0.065  Sum_probs=101.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC---HHhhhC--CCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~--~ADiVIi  115 (279)
                      |||.|+||+||+|++++..|+..++ ..++++|.....+....+.+......+..+.. -.|   +.+.++  +.|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            6999999999999999999998886 24778886542222222333322334554321 123   223333  5899999


Q ss_pred             ccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCC--------ceEEEecCCCCch-----HHHHHH------HHHH
Q 023671          116 PAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN--------ATVNLISNPVNST-----VPIAAE------VFKK  174 (279)
Q Consensus       116 tag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~--------a~viv~TNPvd~~-----t~~~~~------~~~~  174 (279)
                      +|+....+.  .+..+.+..|+.....+.+.+.+....        ..++.+|.-. +.     .+. .+      ....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~-~~~~~~~~~~~e  157 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDE-VENSVTLPLFTE  157 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGG-SCTTSCCCCBCT
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccce-eeCCCccCCc-cccccCCCCccc
Confidence            997542110  122456788888888888888765322        2344442200 00     000 00      0000


Q ss_pred             hCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671          175 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  219 (279)
Q Consensus       175 ~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~  219 (279)
                      .....|..++|.+.+...++-...++..+++...++ ..|+|.++.
T Consensus       158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~  203 (361)
T d1kewa_         158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF  203 (361)
T ss_dssp             TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCC
Confidence            011234455777766666776667788888888887 458997754

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=2.5e-07  Score=80.66  Aligned_cols=157  Identities=14%  Similarity=0.087  Sum_probs=95.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhh--hCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA--LTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~ea--l~~ADiVIitag  118 (279)
                      ++||.|+||+|++|++++..|+++|+  +++++|....    .|+.+..            .+.+.  ..+.|+|+++++
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~------------~~~~~~~~~~~d~v~~~a~   63 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR------------AVHDFFASERIDQVYLAAA   63 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH------------HHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH------------HHHHHHhhcCCCEEEEcch
Confidence            35999999999999999999999997  6777765431    1222111            11112  235789999886


Q ss_pred             CCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC------CchHHHHHHHH-HHhCCCCCCCeeeecc
Q 023671          119 VPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVF-KKAGTYDPKKLLGVTM  188 (279)
Q Consensus       119 ~~~k~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv------d~~t~~~~~~~-~~~~~~~~~kViG~t~  188 (279)
                      .....   .....+.+..|+.....+++.+.+..-..+|+..|.-+      ..++    |-. ....-.+++..+|.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~----E~~~~~~~~~~~~~~Y~~sK  139 (315)
T d1e6ua_          64 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMA----ESELLQGTLEPTNEPYAIAK  139 (315)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBC----GGGTTSSCCCGGGHHHHHHH
T ss_pred             hccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCcc----CCccccCCCCCCCCHHHHHH
Confidence            43211   11235567889999999999999887555554444111      0000    000 0000111223466666


Q ss_pred             hhHHHHHHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671          189 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  219 (279)
Q Consensus       189 lds~R~~~~la~~l~v~~~~V~-~~ViGehg~  219 (279)
                      +...++-...++..|++..-++ ..|+|+++.
T Consensus       140 ~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         140 IAGIKLCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            6666666666777788877777 569998764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.36  E-value=1.5e-06  Score=76.77  Aligned_cols=169  Identities=15%  Similarity=0.028  Sum_probs=105.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hh---HHhhhhcccCCCeEEEEeC-CCC---HHhhhCCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTGAVVRGFLG-QPQ---LENALTGMD  111 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g---~~~DL~~~~~~~~v~~~~~-~~d---~~eal~~AD  111 (279)
                      ++||.|+||+|++|++++..|.+.|+  +|..+|....  ..   ....+........++...+ ..|   ......+.|
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~   93 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD   93 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence            36899999999999999999999998  9999997431  11   1111111111122332221 112   234568899


Q ss_pred             EEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC------CchHHHHHHHHHHhCCCCCCCe
Q 023671          112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVFKKAGTYDPKKL  183 (279)
Q Consensus       112 iVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv------d~~t~~~~~~~~~~~~~~~~kV  183 (279)
                      .|++++....-+  ..+....+..|+.....+++.+.+.....+|...|..+      ...+        +..-..|...
T Consensus        94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~--------E~~~~~p~~~  165 (341)
T d1sb8a_          94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKV--------EDTIGKPLSP  165 (341)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC--------TTCCCCCCSH
T ss_pred             ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCcc--------CCCCCCCCCc
Confidence            999987643211  12335577889999999999999887666665555311      1111        0112334466


Q ss_pred             eeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671          184 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  219 (279)
Q Consensus       184 iG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~  219 (279)
                      +|.+.+...++-...++..+++..-++ ..|+|.+++
T Consensus       166 Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         166 YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             chHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            777766667777777888888887777 448887654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=5.7e-07  Score=81.02  Aligned_cols=175  Identities=14%  Similarity=0.142  Sum_probs=98.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------------hhHH---hhhhcccCCCeEEEEeC-CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------------PGVT---ADISHMDTGAVVRGFLG-QP  101 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---------------~g~~---~DL~~~~~~~~v~~~~~-~~  101 (279)
                      .|||.|+||+||+|++++..|++.|+  +|+.+|....               ....   ..+... ...+++.+.+ -.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCC
Confidence            37999999999999999999999998  9999994210               0000   000000 0123333221 11


Q ss_pred             C---HHhhhC--CCCEEEEccCCCCCC--CCc---hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHH-HH-H
Q 023671          102 Q---LENALT--GMDLVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP-IA-A  169 (279)
Q Consensus       102 d---~~eal~--~ADiVIitag~~~k~--g~~---r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~-~~-~  169 (279)
                      |   +.++++  +.|+|+++|+....+  -.+   ..+....|+.....+++.+.+++.+..++..|.-...... .- .
T Consensus        78 d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~  157 (393)
T d1i24a_          78 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIE  157 (393)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBC
T ss_pred             CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccc
Confidence            2   234454  359999999754211  111   2356788999999999999999988777666532211000 00 0


Q ss_pred             HHHH----------HhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          170 EVFK----------KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       170 ~~~~----------~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                      +...          ......|...+|.+.+-...+-...++..+++...++ ..|+|.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~  217 (393)
T d1i24a_         158 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  217 (393)
T ss_dssp             SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             cccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCc
Confidence            0000          0000122334566554444454556677787776666 44777653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.29  E-value=3.9e-06  Score=67.00  Aligned_cols=95  Identities=17%  Similarity=0.183  Sum_probs=61.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |+||+|||+ |.+|+++|..|...++..+|+.+|+++ ....+.+.....    .. .  +........++|+||++.. 
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~----~~-~--~~~~~~~~~~~dlIila~p-   71 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID----EG-T--TSIAKVEDFSPDFVMLSSP-   71 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS----EE-E--SCGGGGGGTCCSEEEECSC-
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch----hh-h--hhhhhhhccccccccccCC-
Confidence            458999998 999999999999999777999999976 222223222111    11 1  1111234568999999862 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                                     ...+.++.+.+..+. ++.+++-++.
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             ---------------chhhhhhhhhhhcccccccccccccc
Confidence                           123455666666654 6666665554

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.2e-06  Score=77.22  Aligned_cols=105  Identities=14%  Similarity=0.110  Sum_probs=70.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC--C--CCH-HhhhCCCCEEEEc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--PQL-ENALTGMDLVIIP  116 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~--~--~d~-~eal~~ADiVIit  116 (279)
                      |||.|+||+||+|++++..|+.+|.. +|+.+|+.... . .++..   .++++.+.+  +  .++ +.+++++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~-~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA-I-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG-G-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcc-h-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            69999999999999999988888732 89999986411 1 11111   223333321  1  122 2367899999999


Q ss_pred             cCCCCCCCC--chhhHHHhhHHHHHHHHHHHHHhCCCc
Q 023671          117 AGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCCPNA  152 (279)
Q Consensus       117 ag~~~k~g~--~r~d~~~~N~~i~~~i~~~I~~~~p~a  152 (279)
                      |+.......  .....+..|+.....+++.+.+....-
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~  112 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI  112 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE
T ss_pred             cccccccccccCCccccccccccccccccccccccccc
Confidence            986532211  123567889999999999998876543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.27  E-value=6.5e-06  Score=72.72  Aligned_cols=106  Identities=14%  Similarity=0.022  Sum_probs=69.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcc-cCCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTGAVVRGF----LGQPQLENALTGMDLVI  114 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~-~~~~~v~~~----~~~~d~~eal~~ADiVI  114 (279)
                      .+||.|+||+|++|++++..|+++|+  +|+...++.. ......+.+. ........+    .....+.+++.++|.|+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            46999999999999999999999998  8887666541 1111111111 111111111    11223457889999999


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  149 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~  149 (279)
                      +.++... ...+.......|+....++++.+.+..
T Consensus        89 ~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~  122 (342)
T d1y1pa1          89 HIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP  122 (342)
T ss_dssp             ECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhccccc-ccccccccccchhhhHHHHHHhhhccc
Confidence            9987542 334445666779999999999998864

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=1.3e-06  Score=77.41  Aligned_cols=113  Identities=19%  Similarity=0.058  Sum_probs=72.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhhC--CCCEEE
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLVI  114 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~--~ADiVI  114 (279)
                      .|.|+||+||+|++++..|+.+|+  +|+.+|....  ........... ...++.+.. -.|   +.++++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            588999999999999999999998  9999996431  11111111110 111221111 112   233333  789999


Q ss_pred             EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ++|+.....  ..........|+.....+.+...+.....++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            999865311  12234567789999999999999887766665555

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.21  E-value=2.9e-06  Score=67.67  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|||. |.+|+.+|..|+..|+  +|..+|+++.  ...++.....    ..   ..+..++++++|+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~~----~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAGA----ET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTTC----EE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhhh----hh---cccHHHHHhCCCeEEEEc
Confidence            69999998 9999999999999999  9999998752  2222332211    11   235678899999999986

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=7.7e-06  Score=70.93  Aligned_cols=166  Identities=14%  Similarity=0.027  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCCH---Hhhh--CCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENAL--TGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d~---~eal--~~ADiVIi  115 (279)
                      +||.|+||+||+|++++..|+.+|+  +|+.+|+.........+.+.....+++.+.. -.|.   .+.+  ...+++++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            4899999999999999999999998  9999998652211122222222234443321 1122   1111  24667777


Q ss_pred             ccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC-------CCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671          116 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-------PVNSTVPIAAEVFKKAGTYDPKKLLGV  186 (279)
Q Consensus       116 tag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN-------Pvd~~t~~~~~~~~~~~~~~~~kViG~  186 (279)
                      +++.....  .....+.+..|+.....+++.+.+..+..+++..|-       +.....        +.+-+.+...+|.
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~--------E~~~~~p~~~Y~~  150 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQD--------ENTPFYPRSPYGV  150 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCC--------CCCCccccChhHH
Confidence            76543211  123456678899999999999999987766665532       111100        0111223344555


Q ss_pred             cchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          187 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       187 t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                      +.+...++....++..+++...++ .-++|..
T Consensus       151 sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~  182 (321)
T d1rpna_         151 AKLYGHWITVNYRESFGLHASSGILFNHESPL  182 (321)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEEecccCCC
Confidence            544455555555666776655554 3366653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.16  E-value=4.8e-06  Score=66.46  Aligned_cols=65  Identities=22%  Similarity=0.380  Sum_probs=49.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |+||++||. |.+|+.+|..|.+.|+  +|..+|++..  ...++.....   ..    ..+..++++++|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~--~~~~~~~~~~---~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAGA---SA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTTC---EE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchh--hhhhhhhhhc---cc----cchhhhhccccCeeeecc
Confidence            569999998 9999999999999999  9999998752  2233333321   11    235678999999999986

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.16  E-value=1.5e-06  Score=71.55  Aligned_cols=104  Identities=11%  Similarity=0.035  Sum_probs=67.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCH----HhhhCCCCEEEEc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP  116 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~----~eal~~ADiVIit  116 (279)
                      ++||.|+||+|++|++++..|+..++..+|....+++...          .+.+...  ..|+    .....+.|.||++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~----------~~~~~~~--~~d~~~~~~~~~~~~d~vi~~   69 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE----------HPRLDNP--VGPLAELLPQLDGSIDTAFCC   69 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC----------CTTEECC--BSCHHHHGGGCCSCCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh----------ccccccc--ccchhhhhhccccchheeeee
Confidence            4699999999999999999999999766777665543110          0111110  0111    1223568999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                      +|..........++...|......+++..++.....++.+
T Consensus        70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~  109 (212)
T d2a35a1          70 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVV  109 (212)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eeeeccccccccccccchhhhhhhcccccccccccccccc
Confidence            8765333333456777888888899998887655544433

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=98.15  E-value=1.9e-06  Score=75.91  Aligned_cols=113  Identities=17%  Similarity=0.155  Sum_probs=72.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhhC--CCCE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDL  112 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~--~ADi  112 (279)
                      .+||.|+||+|++|++++..|+..|+  +|..+|++..  ....... ..  ...++.+.+ -.|   +.++++  ..|+
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~-~~--~~~i~~~~~Dl~d~~~l~~~~~~~~~~~   82 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETA-RV--ADGMQSEIGDIRDQNKLLESIREFQPEI   82 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHT-TT--TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhh-hc--ccCCeEEEeeccChHhhhhhhhhchhhh
Confidence            36999999999999999999999998  9999998762  1111111 11  112222211 112   233443  5589


Q ss_pred             EEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          113 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       113 VIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      |+++|+.+....  ..-......|+.....+++.+.+......++..|
T Consensus        83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            999887542110  1123456779999999999999988666655544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.12  E-value=2.7e-06  Score=69.84  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=63.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--h----hH-------HhhhhcccCCCeEEEEeCCCCHHhhhC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P----GV-------TADISHMDTGAVVRGFLGQPQLENALT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~----g~-------~~DL~~~~~~~~v~~~~~~~d~~eal~  108 (279)
                      |||+|||. |+||..+|..+ .+|+  +|+.+|+++.  .    |.       ..++... .......   +.+...+..
T Consensus         1 MkI~ViGl-G~vGl~~a~~~-a~g~--~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~-~~~~~~~---~~~~~~~~~   72 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLL-SLQN--EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKA---TLDSKAAYK   72 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-TTTS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEE---ESCHHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHH-HCCC--cEEEEECCHHHHHHHhhcccccchhhHHHHhhh-hhhhhhc---cchhhhhhh
Confidence            79999998 99999999766 4687  9999999861  1    11       0111111 1122222   234467789


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  157 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~  157 (279)
                      ++|+|+++.+.|.....+..     ....+....+.+....+..++++-
T Consensus        73 ~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~  116 (196)
T d1dlja2          73 EAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIK  116 (196)
T ss_dssp             HCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEEC
T ss_pred             ccccccccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEee
Confidence            99999999877643221111     123455566666666666655544

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=1.4e-05  Score=63.12  Aligned_cols=97  Identities=11%  Similarity=0.108  Sum_probs=62.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~--~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |+||+|+||||.||+-+...|+.++  ...+++++...+..+.........  ..+..   ..+ .+++.++|++|++++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~~---~~~-~~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-LEALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCEE---TTC-HHHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeeec---ccc-hhhhhcCcEEEEecC
Confidence            4599999999999999997776654  356888887665333322222211  11111   123 357899999999873


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                                      ..+.+++++.+.+.+.+++|  ++|..
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~V--ID~Ss   99 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYW--IDAAS   99 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSS
T ss_pred             ----------------chHHHHhhHHHHhcCCCeec--ccCCc
Confidence                            35567778888776655554  45544

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.11  E-value=8.1e-06  Score=66.57  Aligned_cols=162  Identities=15%  Similarity=0.004  Sum_probs=87.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |++|.|+||+|++|++++..|+.+|+--.++.+++++.  ...++....  ..+.. .....++.++++++|.||++++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~--~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--GKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH--HHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH--HHHhccCCc--EEEEeeeccccccccccccceeeEEEEee
Confidence            55999999999999999999999987224444444331  112222110  11111 01112346778999999999875


Q ss_pred             CCCC---------------CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCee
Q 023671          120 PRKP---------------GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  184 (279)
Q Consensus       120 ~~k~---------------g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kVi  184 (279)
                      ....               ..........|+...+.++...............+...+.-            ..| ....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~------------~~~-~~~~  145 (252)
T d2q46a1          79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP------------DHP-LNKL  145 (252)
T ss_dssp             CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT------------TCG-GGGG
T ss_pred             ccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCC------------Ccc-cccc
Confidence            3210               01122334556777778888777766544433322111110            011 1111


Q ss_pred             ee-cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671          185 GV-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  219 (279)
Q Consensus       185 G~-t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~  219 (279)
                      +. .......+...+.+..+++..-++ ..++|.++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~  182 (252)
T d2q46a1         146 GNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGG  182 (252)
T ss_dssp             GGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCTT
T ss_pred             cccchhhhhhhhhhhhhcccccceeecceEEECCCcc
Confidence            11 122233344555666777666565 568888754

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.01  E-value=6.2e-05  Score=59.33  Aligned_cols=111  Identities=12%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~--~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      |||+||||+|+||+-+...|....  ...++.++...+..|+..++...  ...+..   ..+ .+.++++|+||++.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~--~~~~~~---~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKD--AGMLHD---AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSC--CCBCEE---TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCc--ceeeec---ccc-hhhhccccEEEEecC-
Confidence            699999999999999997776543  24588887665543433322211  111111   224 466899999999863 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecch
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  189 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~l  189 (279)
                                     -...+++++.+.+.+.+.+|  +.|..|.             .++++-++++.-+
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPEi  113 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDPV  113 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCCc
Confidence                           24567888888887777655  4565543             3566677777533

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.99  E-value=2.4e-06  Score=72.76  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~  119 (279)
                      |||.|+||+|+||++++..|...+   +++.+|.... ....|+.+.            ..+++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~-~~~~Dl~~~------------~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSK-EFCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCS-SSCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCc-cccCcCCCH------------HHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999999888777   5666776541 111222211            12334454  45999999985


Q ss_pred             CCC--CCCchhhHHHhhHHHHHHHHHHHHHhCC
Q 023671          120 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCP  150 (279)
Q Consensus       120 ~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p  150 (279)
                      ...  ...........|......+.+..++.+.
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~   97 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA   97 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             ccccccccCccccccccccccccchhhhhcccc
Confidence            421  1223345667788888888888876543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.99  E-value=4.3e-06  Score=74.91  Aligned_cols=176  Identities=15%  Similarity=0.132  Sum_probs=96.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC----------c-hhHHhhhhccc------CCCeEEEEeC-CC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN----------T-PGVTADISHMD------TGAVVRGFLG-QP  101 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~----------~-~g~~~DL~~~~------~~~~v~~~~~-~~  101 (279)
                      .|||.|+||+||+|++++..|++ .++  +|+++|.-.          . ......+....      ....+....+ -.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            36999999999999999987765 677  999999521          1 11111122211      1122332211 11


Q ss_pred             C---HHhhh---CCCCEEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC-C--chHHHHHH
Q 023671          102 Q---LENAL---TGMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-N--STVPIAAE  170 (279)
Q Consensus       102 d---~~eal---~~ADiVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv-d--~~t~~~~~  170 (279)
                      |   +.+++   +++|+|+++|+......  .........|+.....++....+..+..++...|--+ .  ..-....+
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  159 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN  159 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccc
Confidence            2   22223   57899999997543211  1233456789999999999999888765554432100 0  00000000


Q ss_pred             --HHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671          171 --VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  218 (279)
Q Consensus       171 --~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg  218 (279)
                        -+.......|...+|.+.+...++-....+..|++...++ ..++|...
T Consensus       160 ~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~  210 (383)
T d1gy8a_         160 AEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHE  210 (383)
T ss_dssp             CCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCT
T ss_pred             ccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCc
Confidence              0000011233455666555555555566677777776666 44777544

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.5e-06  Score=71.70  Aligned_cols=111  Identities=19%  Similarity=0.096  Sum_probs=69.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------chhHHhhhhcccCCCeEEEEeC-CCC---HHhhhCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------TPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--------~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal~~  109 (279)
                      +||.|+||+||+|++++..|+..|+  +|+.+|...        .......+.... ..+++.+.+ -.|   +.+.+.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            5899999999999999999999998  999998532        001111111111 223333221 123   2334444


Q ss_pred             --CCEEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671          110 --MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVN  155 (279)
Q Consensus       110 --ADiVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi  155 (279)
                        .|+|+++|+.+....  ....+.+..|+.....+...+++++.+.++.
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~  129 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVF  129 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccc
Confidence              446778887542110  1234567889999999999999887665443

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.8e-05  Score=69.29  Aligned_cols=166  Identities=12%  Similarity=0.023  Sum_probs=95.6

Q ss_pred             cEE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhccc---CCCeEEEEeC-CCC---HHhhh--C
Q 023671           42 FKV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMD---TGAVVRGFLG-QPQ---LENAL--T  108 (279)
Q Consensus        42 ~KI-~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~---~~~~v~~~~~-~~d---~~eal--~  108 (279)
                      +|| .|+||+||+|++++..|+.+|+  +|+.+|+...   .+...++....   ...+++.+.+ -.|   +.+++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            489 6999999999999999999998  9999998651   11111121111   1223444322 112   22233  3


Q ss_pred             CCCEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC-C-ceEEEec------CC-CCchHHHHHHHHHHhCC
Q 023671          109 GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP-N-ATVNLIS------NP-VNSTVPIAAEVFKKAGT  177 (279)
Q Consensus       109 ~ADiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p-~-a~viv~T------NP-vd~~t~~~~~~~~~~~~  177 (279)
                      +.++|+++++.....  -....+.+..|+.....+.+.+++.+. + ..++.+|      +| -..++        +...
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~--------E~~~  150 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQK--------ETTP  150 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBC--------TTSC
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCC--------CCCC
Confidence            566888877643211  112345567899999999999988763 2 3455544      11 11111        1122


Q ss_pred             CCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671          178 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  217 (279)
Q Consensus       178 ~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh  217 (279)
                      +.|...+|.+.+...++-...++..+++...++ ..++|..
T Consensus       151 ~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         151 FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            344556777666555555555677777665555 4477764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.90  E-value=1.2e-05  Score=65.64  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             hhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEE-EeCCCCHHh
Q 023671           29 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLEN  105 (279)
Q Consensus        29 ~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~-~~~~~d~~e  105 (279)
                      .....-+..+.+.++|.|+||+|.+|..++..|++.|.  +|+++|++.  ....+..+........... .....+.++
T Consensus        11 ~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (191)
T d1luaa1          11 ALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAE   88 (191)
T ss_dssp             HHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHH
T ss_pred             HHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHH
Confidence            33334455667788999999999999999999999997  999999986  2222222322111111111 111234567


Q ss_pred             hhCCCCEEEEccCCC
Q 023671          106 ALTGMDLVIIPAGVP  120 (279)
Q Consensus       106 al~~ADiVIitag~~  120 (279)
                      ++.++|++|.++|.+
T Consensus        89 ~~~~iDilin~Ag~g  103 (191)
T d1luaa1          89 AVKGAHFVFTAGAIG  103 (191)
T ss_dssp             HTTTCSEEEECCCTT
T ss_pred             HhcCcCeeeecCccc
Confidence            789999999999864

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.90  E-value=8.3e-06  Score=64.50  Aligned_cols=65  Identities=18%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||++||+ |.+|++++..|...+.  ++.++|++..  ...++.....   +.   ...+..+++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~--~~~~l~~~~g---~~---~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLE--RSKEIAEQLA---LP---YAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHH--HHHHHHHHHT---CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHH--hHHhhccccc---ee---eechhhhhhhccceeeeec
Confidence            69999998 9999999999988887  9999998642  1222221110   11   1235678899999999986

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.90  E-value=1.2e-05  Score=69.99  Aligned_cols=174  Identities=11%  Similarity=-0.033  Sum_probs=92.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcc---cCCCeEEEEeC-CCCH---Hhhh--CC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM---DTGAVVRGFLG-QPQL---ENAL--TG  109 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~---~~~~~v~~~~~-~~d~---~eal--~~  109 (279)
                      +|+.|+||+|++|++++..|+.+|+  +|+.+|+...   ......+...   .....++.+.+ ..+.   .+.+  .+
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~   79 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK   79 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence            4888999999999999999999999  9999997531   1111111110   01223333221 1222   2223  46


Q ss_pred             CCEEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhC----CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCe
Q 023671          110 MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  183 (279)
Q Consensus       110 ADiVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~----p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kV  183 (279)
                      .|+||++|+......  ....+.+..|......+...+.+.+    ...+++..+. +...... .....+..-+.|...
T Consensus        80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss-~~~~~~~-~~~~~E~~~~~p~~~  157 (339)
T d1n7ha_          80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS-SEMFGST-PPPQSETTPFHPRSP  157 (339)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE-GGGGTTS-CSSBCTTSCCCCCSH
T ss_pred             cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeeccc-ceecccC-CCCCCCCCCCCCcch
Confidence            799999997643211  1223456677777777776665432    2223333221 1000000 000001112334556


Q ss_pred             eeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671          184 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  219 (279)
Q Consensus       184 iG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~  219 (279)
                      .|.+.+.+.++-...++..+++...++ ..|+|.++.
T Consensus       158 Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         158 YAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            666666565565566677787766666 447887643

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.90  E-value=7e-06  Score=69.51  Aligned_cols=90  Identities=21%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  119 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~  119 (279)
                      |||.|+||+|++|++++..|..+|+  +|+.+|+++     .|+.+..            ++++.++  +.|+||++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~-----~D~~d~~------------~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNVL------------AVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechh-----ccCCCHH------------HHHHHHHHcCCCEEEeeccc
Confidence            7999999999999999999999998  999999764     1222211            1234443  67999999875


Q ss_pred             CCCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 023671          120 PRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP  150 (279)
Q Consensus       120 ~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p  150 (279)
                      .....  .........|......+.........
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             cccccccccchhhcccccccccccccccccccc
Confidence            42111  11233455666666666666665543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.78  E-value=5.7e-05  Score=60.57  Aligned_cols=74  Identities=12%  Similarity=0.200  Sum_probs=47.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .|||+|||. |.+|..++..|+..|+  +|..||+++.+  ............+.........++...+..++.++...
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            379999998 9999999999999998  99999997621  11121111111223333211122334567778877765

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.72  E-value=1.9e-05  Score=62.04  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=46.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||+|||. |.+|+.++..|.+.|+  ++..+|.++...... .....   .+..     +..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~~~~-----~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---GVTE-----TSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---TCEE-----CCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---cccc-----cHHHHHhhcCeEEEEe
Confidence            69999998 9999999999999998  999998765221111 11111   1111     2368899999999986

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.72  E-value=2.8e-05  Score=66.15  Aligned_cols=77  Identities=16%  Similarity=0.061  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--h-hHHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P-GVTADISHMDTGAVVRGFLG----QPQLENALTGMDL  112 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~-g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADi  112 (279)
                      +++||.|+||+|++|++++..|+..|+  +|+.++++..  . .....+.... ...++...+    ...+.+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            456999999999999999999999997  9999987652  1 1111111111 112222211    1234567899999


Q ss_pred             EEEccCC
Q 023671          113 VIIPAGV  119 (279)
Q Consensus       113 VIitag~  119 (279)
                      ++.+++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9998754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.71  E-value=0.0001  Score=59.11  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=61.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      .+|+|||. |.+|+.+|..|+..|+  +|+.+|+++.  ...++..... ...........++.+.+.++|.++++... 
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~-   76 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVS--KVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKA-   76 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTH--HHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCT-
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHH--HHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCc-
Confidence            37999998 9999999999999999  9999999762  2222322211 11122211123456778999999998521 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T  158 (279)
                                    .+.+.++...+.... |..++|..|
T Consensus        77 --------------~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          77 --------------GQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             --------------THHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             --------------hHHHHHHHHHHHhccccCcEEEecC
Confidence                          133444555565555 555555544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.67  E-value=4.4e-05  Score=64.25  Aligned_cols=77  Identities=19%  Similarity=0.174  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch----hHHhhhhcccCCCeEEEEeC-C---CCHHhhhCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFLG-Q---PQLENALTGMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~----g~~~DL~~~~~~~~v~~~~~-~---~d~~eal~~AD  111 (279)
                      .++||.|+||+|++|++++..|+..|+  +|+.++++...    .....+.+.. ...+....+ .   ....++++++|
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~   78 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVD   78 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhhhce
Confidence            356999999999999999999999998  99999987611    1111111111 111222111 1   12346688999


Q ss_pred             EEEEccCC
Q 023671          112 LVIIPAGV  119 (279)
Q Consensus       112 iVIitag~  119 (279)
                      .|+.+++.
T Consensus        79 ~vi~~~~~   86 (307)
T d1qyca_          79 VVISTVGS   86 (307)
T ss_dssp             EEEECCCG
T ss_pred             eeeecccc
Confidence            99998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.66  E-value=9.9e-05  Score=56.36  Aligned_cols=98  Identities=21%  Similarity=0.177  Sum_probs=59.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHh-hhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LEN-ALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~e-al~~ADiVIita  117 (279)
                      |||.|+|+ |.+|..++..|...|+  +++++|.++.  .+.++.... ...+- +...+|   +.+ .++++|.++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~--~~~~~~~~~-~~~vi-~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKD--ICKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChh--hhhhhhhhh-hhhhc-cCcccchhhhhhcChhhhhhhcccC
Confidence            79999999 9999999999999998  9999999862  111122111 11111 111122   222 258999998874


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ..         |  ..|+.+    +...++++++.++..+.||.
T Consensus        74 ~~---------d--~~N~~~----~~~~k~~~~~~iI~~~~~~~  102 (132)
T d1lssa_          74 GK---------E--EVNLMS----SLLAKSYGINKTIARISEIE  102 (132)
T ss_dssp             SC---------H--HHHHHH----HHHHHHTTCCCEEEECSSTT
T ss_pred             Cc---------H--HHHHHH----HHHHHHcCCceEEEEecCHH
Confidence            21         1  345422    22344567776666666665

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00063  Score=57.71  Aligned_cols=118  Identities=18%  Similarity=0.227  Sum_probs=74.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC----------HHhhhC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENALT  108 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d----------~~eal~  108 (279)
                      +.+.|+||++-+|..+|..|++.|.  +|++.|+++  .+..+.++.......++..+.. -++          ..+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4688999999999999999999998  999999986  3333444554332233333211 122          122245


Q ss_pred             CCCEEEEccCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671          109 GMDLVIIPAGVPRKP---GMTR---DDLFNIN----AGIVRTLCEGIAKCC-PNATVNLISNPV  161 (279)
Q Consensus       109 ~ADiVIitag~~~k~---g~~r---~d~~~~N----~~i~~~i~~~I~~~~-p~a~viv~TNPv  161 (279)
                      .-|++|..||.....   ..+.   ...+..|    +...+.+++.+.+.. ..+.|++++-..
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~  152 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMS  152 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGG
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechH
Confidence            789999999864321   1221   1233344    556677788877765 467777776433

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=0.00016  Score=54.99  Aligned_cols=70  Identities=13%  Similarity=0.158  Sum_probs=45.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC--CCCHHhh-hCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--QPQLENA-LTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~--~~d~~ea-l~~ADiVIitag  118 (279)
                      +|+.|+|+ |.+|+.++..|...|+  +++++|.++.  .+.++.+..  ..+..-..  ...+.++ +.+||.||++.+
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~--~~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYA--THAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHH--HHHHHHHhC--CcceeeecccchhhhccCCccccEEEEEcC
Confidence            37899999 9999999999999998  9999999862  122222221  11111111  1123333 789999888753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.58  E-value=0.00044  Score=60.45  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC-CC----HHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~-~d----~~eal~~ADiVI  114 (279)
                      ++++|.|+||+|++|++++..|+..|+  +|+.+-++........+...   ..++.+.+. .|    +..++.++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            456999999999999999999999998  88888766522222222221   223322211 12    345789999988


Q ss_pred             EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +.....   .       ..|....+.+++...+.+-..+++..|-
T Consensus        77 ~~~~~~---~-------~~~~~~~~~~~~aa~~agv~~~v~~Ss~  111 (350)
T d1xgka_          77 INTTSQ---A-------GDEIAIGKDLADAAKRAGTIQHYIYSSM  111 (350)
T ss_dssp             ECCCST---T-------SCHHHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred             eecccc---c-------chhhhhhhHHHHHHHHhCCCceEEEeec
Confidence            764221   1       2344555667777777764455555443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.53  E-value=3.8e-05  Score=60.30  Aligned_cols=65  Identities=15%  Similarity=0.113  Sum_probs=44.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |||++||+ |.+|++++..|...+. .+|.++|+++.  ...++....   .+...   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~--~~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAE--KRERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHH--HHHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChh--HHHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            69999999 9999999998776652 39999998752  112222211   12222   233 5689999999986

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00023  Score=60.09  Aligned_cols=106  Identities=8%  Similarity=0.045  Sum_probs=65.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HHhhhCCCCEEEEccCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENALTGMDLVIIPAGVP  120 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~eal~~ADiVIitag~~  120 (279)
                      |.|+||+||+|++++..|+++|+ .+|+.+|.-........+.+... ..........+   ....+.++++|+++|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNI-ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCC-SEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccch-hhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999884 37888984331111112222111 11111000000   012357889999998766


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCC
Q 023671          121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  151 (279)
Q Consensus       121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~  151 (279)
                      .............|+.....+.+...+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5555555556677788888888888877654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.40  E-value=0.00016  Score=58.06  Aligned_cols=81  Identities=21%  Similarity=0.240  Sum_probs=55.9

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      .+.++-||.|||+ |.+|...+...+.-|-  +|..+|.+. ......+....  ..... ......+++.+++||+||-
T Consensus        28 ~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~--~~~~~-~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          28 PGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--RVELL-YSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             TTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--GSEEE-ECCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc--cceee-hhhhhhHHHhhccCcEEEE
Confidence            4456899999999 9999999988887775  999999986 22221211111  11222 2223356788999999999


Q ss_pred             ccCCCCCC
Q 023671          116 PAGVPRKP  123 (279)
Q Consensus       116 tag~~~k~  123 (279)
                      ++-+|.+.
T Consensus       102 aalipG~~  109 (168)
T d1pjca1         102 AVLVPGRR  109 (168)
T ss_dssp             CCCCTTSS
T ss_pred             eeecCCcc
Confidence            99877544

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.40  E-value=0.00033  Score=54.46  Aligned_cols=55  Identities=22%  Similarity=0.352  Sum_probs=43.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..++||+|||+.|.+|.++|..|.+.|+  +|.++|++...                      ..++...++|+++.+.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~   61 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSV   61 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECS
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhcccccccc
Confidence            3456999999449999999999999999  99999986410                      1135578899999876

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00035  Score=58.43  Aligned_cols=113  Identities=17%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      .+.+++.|+||++-+|..++..|++.|.  +|++.|+++..  ..+..+....+.++  ...+...+.+...|++|..||
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~--l~~~~~~~~~~Dv~--~~~~~~~~~~g~iD~lVnnAG   75 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEEL--LKRSGHRYVVCDLR--KDLDLLFEKVKEVDILVLNAG   75 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHTCSEEEECCTT--TCHHHHHHHSCCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHhcCCcEEEcchH--HHHHHHHHHhCCCcEEEeccc
Confidence            4567899999999999999999999998  99999997511  01111100000000  000123455789999999999


Q ss_pred             CCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .+....   .+..   ..+..|    ..+.+.+++.+++.. .+.+|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~  124 (234)
T d1o5ia_          76 GPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAIT  124 (234)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             ccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccc
Confidence            764321   2222   223334    346677777777654 45555554

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00031  Score=59.28  Aligned_cols=114  Identities=16%  Similarity=0.212  Sum_probs=70.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCC------HHhhhCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ------LENALTGM  110 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d------~~eal~~A  110 (279)
                      -+.+++.|+||++-+|..+|..|+..|.  +|++.|+++  +.....++....   .+. . .-+|      ..+.+..-
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~---~~~-~-Dv~d~~~v~~~~~~~g~i   77 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE---PVC-V-DLGDWEATERALGSVGPV   77 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEE-C-CTTCHHHHHHHHTTCCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCe---EEE-E-eCCCHHHHHHHHHHhCCc
Confidence            3556899999999999999999999998  999999986  222222222110   011 0 1112      12235689


Q ss_pred             CEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          111 DLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       111 DiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      |++|..||......   .+..   ..+..|    ..+.+.+++.+.+....+.|++++.
T Consensus        78 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS  136 (244)
T d1pr9a_          78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS  136 (244)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             eEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccc
Confidence            99999998754221   2222   234444    3466777776665555677776653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.32  E-value=0.0011  Score=56.11  Aligned_cols=114  Identities=20%  Similarity=0.311  Sum_probs=71.9

Q ss_pred             cEE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhhh
Q 023671           42 FKV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  107 (279)
Q Consensus        42 ~KI-~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal  107 (279)
                      +|| .|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++.+..  .++..+. .-+|.          .+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            376 5779999999999999999998  999999987  333344454432  2222221 11121          1224


Q ss_pred             CCCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ..-|++|..||.....   ..+..   ..+..|    ....+..++.+.+....+.|+++|.
T Consensus        77 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS  138 (255)
T d1gega_          77 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  138 (255)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccc
Confidence            5899999999975322   12222   234445    3455667777777777777777654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.31  E-value=0.00029  Score=59.66  Aligned_cols=115  Identities=16%  Similarity=0.117  Sum_probs=71.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal  107 (279)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  ++..+.++...   .++..+. .-+|.          .+.+
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45788889999999999999999998  999999976  22223333221   1222221 11121          2234


Q ss_pred             CCCCEEEEccCCCCCC---CCchhh---HHHhh----HHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          108 TGMDLVIIPAGVPRKP---GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r~d---~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      -.-|++|..||.....   ..+..+   .+..|    ....+..++.+.+....+.||+++..
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~  143 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecc
Confidence            5789999999875322   222222   34444    44667777777766656677777643

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.24  E-value=0.00014  Score=57.23  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |||+|||++|.+|.++|..|+..|+  +|++.++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            7999996669999999999999999  999999986

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.22  E-value=0.00044  Score=54.10  Aligned_cols=71  Identities=17%  Similarity=0.128  Sum_probs=47.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC---CCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~---~d~~eal~~ADiVIita  117 (279)
                      .+||.|+|| |.+|.++|..|...|+  +|.++|++..  .+.++........... ...   ....+.+...|+++.+.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQHSTPIS-LDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCTTEEEEE-CCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhccccccccc-ccccchhhhHhhhhccceeEeec
Confidence            359999999 9999999999999998  9999999862  2233333221111111 111   12345578899888764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00033  Score=59.04  Aligned_cols=113  Identities=14%  Similarity=0.224  Sum_probs=68.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCH---H---hhhCCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL---E---NALTGMD  111 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~---~---eal~~AD  111 (279)
                      +.+++.|+||++-+|..++..|+..|.  +|++.|+++  +.....++....   .+. . .-+|.   +   +.+..-|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~---~~~-~-Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVC-V-DLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEE-C-CTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEE-E-eCCCHHHHHHHHHHcCCCe
Confidence            356889999999999999999999998  999999876  222222222110   011 0 11121   1   2245889


Q ss_pred             EEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          112 LVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       112 iVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ++|..||......   .+..   ..+..|    ..+.+...+.+.+....+.+|+++.
T Consensus        77 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS  134 (242)
T d1cyda_          77 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  134 (242)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccch
Confidence            9999999754221   1222   233444    3455666666665555666766654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.21  E-value=0.0015  Score=55.40  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=72.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH----------Hh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------EN  105 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~e  105 (279)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|++.   ++....++....  .++..+. .-+|.          .+
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            345788899999999999999999998  999999875   222333443321  2222221 11121          12


Q ss_pred             hhCCCCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          106 ALTGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       106 al~~ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      .+..-|++|..||......   .+..   ..+..|    ....+..++.+.+....+.|+++|..
T Consensus        82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~  146 (261)
T d1geea_          82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSV  146 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCG
T ss_pred             HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccc
Confidence            2347899999998754221   2222   234444    45677788888776666666666543

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.00023  Score=57.63  Aligned_cols=73  Identities=16%  Similarity=0.218  Sum_probs=45.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc--CCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~--~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      |+||+|+||||.+|.-+...|...+.+ ||..+=-++..|+..+-.+..  ....+.    ..+.++...++|+|+.+.+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEccc
Confidence            579999999999999999999887755 555553333333322111111  111121    1244455578999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0004  Score=49.80  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      +.+||.|+|. |-.|.++|..|..+|.  ++.++|.+.......++.+   ...+..  +..+ .+.+.+.|+||++-|+
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERHT--GSLN-DEWLMAADLIVASPGI   74 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEEE--SBCC-HHHHHHCSEEEECTTS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---ccceee--cccc-hhhhccCCEEEECCCC
Confidence            3458999999 9999999999999997  9999998662111122222   122221  1222 4568899999999888


Q ss_pred             CC
Q 023671          120 PR  121 (279)
Q Consensus       120 ~~  121 (279)
                      |.
T Consensus        75 ~~   76 (93)
T d2jfga1          75 AL   76 (93)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.00021  Score=55.87  Aligned_cols=71  Identities=21%  Similarity=0.322  Sum_probs=46.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +|||+|+||+|.+|.-+...|.+.+ ...||.++-..+..|+.....    ...+....  .+ .+.+.++|+++++++
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~----~~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA----ESSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET----TEEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeec----cccchhcc--ch-hhhhccceEEEecCC
Confidence            5799999999999999999887654 345888886655334332111    12222211  12 345789999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.0031  Score=53.05  Aligned_cols=115  Identities=15%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---H-------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~-------~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|++.|.  +|++.|+++  +...+.++.+.. ..++..+. .-+|   .       .+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456788999999999999999999998  999999986  223333443321 12222221 1111   1       122


Q ss_pred             hCCCCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +...|++|..||......   .+..   ..+..|    ..+.+..++.+.+.. .+.+|+++
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~  141 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIG  141 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccc
Confidence            457999999999753321   1222   234444    456666777776544 44555543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0049  Score=51.67  Aligned_cols=119  Identities=20%  Similarity=0.287  Sum_probs=75.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~ea  106 (279)
                      ..+.+.|+||++-+|..+|..|++.|.  +|++.|+++  ++..+.++...  ..++..+. .-+|.          .+.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            345788889999999999999999998  999999987  33344444432  22333221 11222          123


Q ss_pred             hCCCCEEEEccCCCCCCCC--ch----hhHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          107 LTGMDLVIIPAGVPRKPGM--TR----DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g~--~r----~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                      +...|++|.+||.......  ..    .+.+..|    +...+.+++.+.+.. .+.|++++.....
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~  147 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGH  147 (244)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-C
T ss_pred             cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhc
Confidence            4579999999987543321  11    1233334    456777888887654 5777777665543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.12  E-value=0.0012  Score=53.56  Aligned_cols=89  Identities=21%  Similarity=0.192  Sum_probs=57.6

Q ss_pred             hhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCC------eEEE--------
Q 023671           32 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGA------VVRG--------   96 (279)
Q Consensus        32 ~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~------~v~~--------   96 (279)
                      +-+..+..++-||.|||| |-+|.+.+...+.-|-  .|..+|++. ......++.......      ..+.        
T Consensus        20 l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~   96 (183)
T d1l7da1          20 MMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEM   96 (183)
T ss_dssp             EEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC------------------
T ss_pred             cccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhc
Confidence            567777888999999999 9999999888886675  999999987 333333222111000      0000        


Q ss_pred             ---Ee--CCCCHHhhhCCCCEEEEccCCCCCC
Q 023671           97 ---FL--GQPQLENALTGMDLVIIPAGVPRKP  123 (279)
Q Consensus        97 ---~~--~~~d~~eal~~ADiVIitag~~~k~  123 (279)
                         +.  ....+.+.+++||+||-++-+|.+.
T Consensus        97 s~~~~~~~~~~l~~~l~~aDlVI~talipG~~  128 (183)
T d1l7da1          97 GEEFRKKQAEAVLKELVKTDIAITTALIPGKP  128 (183)
T ss_dssp             -----CCHHHHHHHHHTTCSEEEECCCCTTSC
T ss_pred             CHHHHHHHHHHHHHHHHhhhhheeeeecCCcc
Confidence               00  0012345689999999999877543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.03  E-value=0.0066  Score=51.17  Aligned_cols=116  Identities=18%  Similarity=0.154  Sum_probs=69.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal  107 (279)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  ++....++.......++..+. .-+|.          .+.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            34788899999999999999999998  999999986  222233333222122232221 11221          1224


Q ss_pred             CCCCEEEEccCCCCCCC----Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|++|..||.....+    .+..   ..+..|    ....+...+.+++.. .+.||+++.
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS  143 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  143 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCccccc
Confidence            57999999999643222    2222   234444    445666667776654 455666553

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.02  E-value=0.0017  Score=52.97  Aligned_cols=94  Identities=21%  Similarity=0.290  Sum_probs=61.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.++..+..-|.  +|..+|............       +..   ..++++.++.||+|+++..
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~~~~p  113 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCG  113 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEEEeec
Confidence            45679999999 9999999999987787  999999865221111111       111   2367888999999999874


Q ss_pred             CCCC-CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          119 VPRK-PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       119 ~~~k-~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .... .++       -|.+       .+....|++++|+++=
T Consensus       114 lt~~T~~l-------i~~~-------~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         114 LNEHNHHL-------INDF-------TVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             CCTTCTTS-------BSHH-------HHTTSCTTEEEEECSC
T ss_pred             ccccchhh-------hhHH-------HHhccCCCCeEEecCC
Confidence            3211 121       1211       2333458899999863

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0047  Score=51.86  Aligned_cols=117  Identities=16%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|++.|.  +|++.|+++  ......++.......++..+. .-+|.          .+.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            345788899999999999999999998  999999986  223333443321112233221 11221          122


Q ss_pred             hCCCCEEEEccCCCCCCCCchhhHHHhh----HHHHHHHHHHHHHhC--CCceEEEecCC
Q 023671          107 LTGMDLVIIPAGVPRKPGMTRDDLFNIN----AGIVRTLCEGIAKCC--PNATVNLISNP  160 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g~~r~d~~~~N----~~i~~~i~~~I~~~~--p~a~viv~TNP  160 (279)
                      +-..|++|..||......  -.+.+..|    +...+..++.+.+..  ..+.|++++..
T Consensus        80 ~G~iDilVnnAg~~~~~~--~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~  137 (254)
T d2gdza1          80 FGRLDILVNNAGVNNEKN--WEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  137 (254)
T ss_dssp             HSCCCEEEECCCCCCSSS--HHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             cCCcCeeccccccccccc--chheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence            357999999998764332  23344444    356667777776553  24667777643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.98  E-value=0.0014  Score=55.71  Aligned_cols=114  Identities=17%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---H-------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~-------~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++....   .+..+. .-+|   .       .+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788899999999999999999998  999999987  333334443321   122111 1112   1       122


Q ss_pred             hCCCCEEEEccCCCCCC-----CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP-----GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~-----g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|..||.....     ..+..   ..+..|    ....+..++.+.+.. .+.+++++.
T Consensus        80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss  143 (268)
T d2bgka1          80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTAS  143 (268)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECC
T ss_pred             cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCcccccc
Confidence            45789999999864321     12222   233444    446666777776654 455555553

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.97  E-value=0.0007  Score=55.54  Aligned_cols=64  Identities=19%  Similarity=0.295  Sum_probs=47.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ..++|+|||. |.+|+.+|..+..-|.  +|..+|.........   + ..    .    ..++.+.++.||+|+++..
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~~----~----~~~l~~~l~~sDii~~~~p  105 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-GY----Y----VDSLDDLYKQADVISLHVP  105 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-TC----B----CSCHHHHHHHCSEEEECSC
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-ee----e----eccccccccccccccccCC
Confidence            3569999998 9999999999988787  999999764211111   1 10    0    1357888999999999863

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0049  Score=51.92  Aligned_cols=114  Identities=18%  Similarity=0.226  Sum_probs=70.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++....  .++..+. .-++.          .+.
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345888999999999999999999998  999999876  233334444322  2222221 11221          222


Q ss_pred             hCCCCEEEEccCCCCCC--CCchhh---HHHhh----HHHHHHHHHHHHHhCCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKP--GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~--g~~r~d---~~~~N----~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +..-|++|.+||.....  ..+..+   .+..|    ..+.+..++.+.+.. .+.||++|
T Consensus        86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~is  145 (255)
T d1fmca_          86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTIT  145 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-cccccccc
Confidence            46899999999875322  223222   33444    446677777777765 44555554

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.95  E-value=0.0048  Score=51.90  Aligned_cols=112  Identities=17%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal  107 (279)
                      .+++.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++..     ++..+. .-+|.          .+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999998  999999986  3333333321     111111 11121          1223


Q ss_pred             CCCCEEEEccCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      -.-|++|..||......   .+..   ..+..|+    .+.+..++.+.+....+.|+++|.
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS  139 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMAS  139 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccc
Confidence            57899999999753221   1222   2344554    455667777666665677777764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.93  E-value=0.0034  Score=49.39  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +..+..||.|||+ |.+|..++..|...|. .++.++.+..  ..+.++.... ......   -+++.+++.++|+||.+
T Consensus        20 ~~l~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~--~ka~~l~~~~-~~~~~~---~~~~~~~l~~~Divi~a   91 (159)
T d1gpja2          20 GSLHDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTY--ERAVELARDL-GGEAVR---FDELVDHLARSDVVVSA   91 (159)
T ss_dssp             SCCTTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSH--HHHHHHHHHH-TCEECC---GGGHHHHHHTCSEEEEC
T ss_pred             CCcccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcH--HHHHHHHHhh-hccccc---chhHHHHhccCCEEEEe
Confidence            3456779999999 9999999999988774 5899998764  2222222221 111111   23677889999999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC--CceEEEecCCCCch
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNST  164 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p--~a~viv~TNPvd~~  164 (279)
                      .+.+..- .+.        +.++   ..+++...  ..+++=.+.|-|+=
T Consensus        92 tss~~~i-i~~--------~~i~---~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          92 TAAPHPV-IHV--------DDVR---EALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             CSSSSCC-BCH--------HHHH---HHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             cCCCCcc-ccH--------hhhH---HHHHhcccCCCeEEEeecCCCCcC
Confidence            7655211 111        1111   33333332  33677779997664

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.00052  Score=57.63  Aligned_cols=114  Identities=17%  Similarity=0.259  Sum_probs=69.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-----hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-----g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      +.+++.|+||++-+|..++..|++.|.  +|++.|+++..     ....|+.+...   ++...  ....+.+..-|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~~---v~~~~--~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDA---VDRAF--TAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHH---HHHHH--HHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHHH---HHHHH--HHHHHhcCCceEEE
Confidence            345889999999999999999999998  99999998721     12233333211   10000  11234456899999


Q ss_pred             EccCCCCCC---CCchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          115 IPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       115 itag~~~k~---g~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ..||.....   ..+..   ..+..|+    .+.+..++.+.+.. .+.||++|.-.
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~  134 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVS  134 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchh
Confidence            999975321   12222   2344443    45666777776654 45666665433

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.90  E-value=0.00084  Score=55.04  Aligned_cols=92  Identities=21%  Similarity=0.184  Sum_probs=60.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..++|+|+|. |.+|+.++..+..-|.  +|+.||.....+.         ......    .++++.++.||+|+++...
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~---------~~~~~~----~~l~~l~~~~D~v~~~~pl  107 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGD---------HPDFDY----VSLEDLFKQSDVIDLHVPG  107 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSC---------CTTCEE----CCHHHHHHHCSEEEECCCC
T ss_pred             cceeeeeeec-ccccccccccccccce--eeeccCCccchhh---------hcchhH----HHHHHHHHhcccceeeecc
Confidence            3569999999 9999999999988887  9999997542111         111121    2577888999999998632


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      .  + .++ .++  |.       +.+....+++++|+++=.
T Consensus       108 t--~-~T~-~li--~~-------~~l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         108 I--E-QNT-HII--NE-------AAFNLMKPGAIVINTARP  135 (199)
T ss_dssp             C--G-GGT-TSB--CH-------HHHHHSCTTEEEEECSCT
T ss_pred             c--c-ccc-ccc--cH-------HHhhccCCceEEEecccH
Confidence            2  1 111 111  21       223334578999998743

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.89  E-value=0.00072  Score=55.13  Aligned_cols=94  Identities=19%  Similarity=0.166  Sum_probs=60.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||. |.+|+.++..+..-|.  ++..+|.......... ....    ..    ..++++.++.||+|++...
T Consensus        45 l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~-~~~~----~~----~~~l~~ll~~sD~v~l~~p  112 (191)
T d1gdha1          45 LDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEA-SYQA----TF----HDSLDSLLSVSQFFSLNAP  112 (191)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHH-HHTC----EE----CSSHHHHHHHCSEEEECCC
T ss_pred             ecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhh-cccc----cc----cCCHHHHHhhCCeEEecCC
Confidence            34579999999 9999999999887777  9999998652111111 1110    11    2357889999999999864


Q ss_pred             CC-CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          119 VP-RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       119 ~~-~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      .. .-.++     +  |.       +.+....|++++|+++
T Consensus       113 lt~~T~~l-----i--~~-------~~l~~mk~~a~lIN~s  139 (191)
T d1gdha1         113 STPETRYF-----F--NK-------ATIKSLPQGAIVVNTA  139 (191)
T ss_dssp             CCTTTTTC-----B--SH-------HHHTTSCTTEEEEECS
T ss_pred             CCchHhhe-----e--cH-------HHhhCcCCccEEEecC
Confidence            32 11121     1  21       1223344789999986

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.86  E-value=0.00089  Score=53.70  Aligned_cols=74  Identities=18%  Similarity=0.278  Sum_probs=43.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC---CchhHHhhhhcc--c--CCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---NTPGVTADISHM--D--TGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~---~~~g~~~DL~~~--~--~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      |+||+|+||||++|.-+...|...+.+ ||.-+-..   ...|+...-.+.  .  ........   .+......++|++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            679999999999999999999988754 54433211   122222211111  1  11222222   2333456899999


Q ss_pred             EEccC
Q 023671          114 IIPAG  118 (279)
Q Consensus       114 Iitag  118 (279)
                      +.+.+
T Consensus        77 f~alp   81 (179)
T d2g17a1          77 FLATA   81 (179)
T ss_dssp             EECSC
T ss_pred             ecccc
Confidence            99853

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.86  E-value=0.00051  Score=55.54  Aligned_cols=77  Identities=14%  Similarity=0.211  Sum_probs=45.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHh-hhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~-DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .++.||+|+||||++|.-+...|...+.+ ||..+--++..|+.. +..............  ....+.+.++|+|+.+.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dvvf~al   79 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNLV--AVKDADFSNVDAVFCCL   79 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCCB--CGGGCCGGGCSEEEECC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccch--hhhhhhhcccceeeecc
Confidence            45679999999999999999999888755 666665444223221 111110001111111  11134568999999885


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      .
T Consensus        80 p   80 (183)
T d2cvoa1          80 P   80 (183)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.82  E-value=0.008  Score=50.48  Aligned_cols=116  Identities=14%  Similarity=0.187  Sum_probs=70.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal  107 (279)
                      .+.+.|+||++-+|..+|..|++.|.  +|++.|+++  +...+.++.... ..++..+. .-+|.          .+.+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45788899999999999999999998  999999987  222233333221 11222211 11121          1234


Q ss_pred             CCCCEEEEccCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g---~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ..-|++|..||......   .+..   ..+..|+    ...+.+++.+.+....+.+++.+.
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            58999999998653221   2222   2344453    466777788777776676666543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.82  E-value=0.0077  Score=50.69  Aligned_cols=155  Identities=14%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCCH----------Hhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d~----------~eal  107 (279)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++....  .++..+.. -+|.          .+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999998  999999986  333334444322  22332211 1121          2234


Q ss_pred             CCCCEEEEccCCCCCCC----Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  176 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~  176 (279)
                      ..-|++|..||.....+    .+..   ..+..|    ....+..++.+.+. ..+.||+++....          .  .
T Consensus        81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~----------~--~  147 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAG----------V--K  147 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH----------H--S
T ss_pred             CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhh----------c--c
Confidence            58999999998653222    2222   233444    34566667776654 4566666653211          1  1


Q ss_pred             CCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          177 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       177 ~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                      +.|..-.++.+.---..|-+.+|..++  +..|++-.+
T Consensus       148 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  183 (260)
T d1zema1         148 GPPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAI  183 (260)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEe
Confidence            233222333332112235667777763  455554433

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.82  E-value=0.0022  Score=51.64  Aligned_cols=88  Identities=22%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..++|+|||. |.+|..++..+..-|.  +|..+|+...++        .. .      ...++++.+++||+|++....
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~--------~~-~------~~~~l~ell~~sDiv~~~~pl  102 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG--------PW-R------FTNSLEEALREARAAVCALPL  102 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS--------SS-C------CBSCSHHHHTTCSEEEECCCC
T ss_pred             cCceEEEecc-ccccccceeeeecccc--cccccccccccc--------ce-e------eeechhhhhhccchhhccccc
Confidence            4569999999 9999999999988887  999999764211        00 0      012567899999999997632


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                        .+ +++ .++  |.       +.++...|++++|+++
T Consensus       103 --~~-~t~-~li--~~-------~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         103 --NK-HTR-GLV--KY-------QHLALMAEDAVFVNVG  128 (181)
T ss_dssp             --ST-TTT-TCB--CH-------HHHTTSCTTCEEEECS
T ss_pred             --cc-ccc-ccc--cc-------ceeeeccccceEEecc
Confidence              21 111 111  11       2333445889999976

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00079  Score=56.66  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=84.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC-----CCHHhhhCCCCEEEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVII  115 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~-----~d~~eal~~ADiVIi  115 (279)
                      .+++.|+||++-+|..+|..|+..|.  +|++.|+++.+  ..++.+.. ..........     +...+.+...|++|.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~--l~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~id~lVn   80 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP-GIQTRVLDVTKKKQIDQFANEVERLDVLFN   80 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST-TEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhcc-CCceeeeeccccccccccccccccceeEEe
Confidence            45788889999999999999999998  99999998621  11122211 1111111000     112234568999999


Q ss_pred             ccCCCCCCC---Cchhh---HHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671          116 PAGVPRKPG---MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  185 (279)
Q Consensus       116 tag~~~k~g---~~r~d---~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG  185 (279)
                      ++|......   .+..+   .+..|    ..+.+.+.+.+.+. +.+.+++++.....+           .+++..-.++
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~-----------~~~~~~~~Y~  148 (245)
T d2ag5a1          81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV-----------KGVVNRCVYS  148 (245)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT-----------BCCTTBHHHH
T ss_pred             cccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhcc-----------CCccchhHHH
Confidence            998754321   22222   23333    44666667766654 456666665443221           1222222333


Q ss_pred             ecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          186 VTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       186 ~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                      .+.---..+-+.+|..++  +..|++-.+
T Consensus       149 ~sKaal~~l~r~lA~e~~--~~gIrvN~I  175 (245)
T d2ag5a1         149 TTKAAVIGLTKSVAADFI--QQGIRCNCV  175 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            421112235567787774  445554433

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.80  E-value=0.0038  Score=50.29  Aligned_cols=95  Identities=18%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|+|+|. |.+|..++..+..-+.  +|..+|.... .....+..       +..   ..++++.+++||+|+++.
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~~  108 (188)
T d2naca1          42 LEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNC  108 (188)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECS
T ss_pred             ccccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhcc
Confidence            45679999999 9999999999987777  9999998652 22111111       111   236788999999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .....   ++ .+  -|.       +.+....+++++|+++-
T Consensus       109 plt~~---T~-~l--i~~-------~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1         109 PLHPE---TE-HM--IND-------ETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             CCCTT---TT-TC--BSH-------HHHTTSCTTEEEEECSC
T ss_pred             ccccc---ch-hh--hHH-------HHHHhCCCCCEEEecCc
Confidence            43211   11 11  111       12233447889999763

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.79  E-value=0.00095  Score=54.00  Aligned_cols=94  Identities=23%  Similarity=0.312  Sum_probs=60.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|+|. |.+|..++..+..-+.  +|..+|.........+..       ++.    .++++.++.||+|+++..
T Consensus        42 l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv~~~~P  107 (184)
T d1ygya1          42 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLP  107 (184)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCC
T ss_pred             ccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEEEEcCC
Confidence            34569999999 9999999998887776  999999765322222111       111    257788999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ....   ++ .+  -|.       +.+....|++++|+++=
T Consensus       108 lt~~---T~-~l--in~-------~~l~~mk~~a~lIN~sR  135 (184)
T d1ygya1         108 KTPE---TA-GL--IDK-------EALAKTKPGVIIVNAAR  135 (184)
T ss_dssp             CSTT---TT-TC--BCH-------HHHTTSCTTEEEEECSC
T ss_pred             CCch---hh-hh--hhH-------HHHhhhCCCceEEEecc
Confidence            3211   11 11  121       22333458899999863

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0073  Score=50.97  Aligned_cols=114  Identities=16%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC----------HHhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d----------~~eal  107 (279)
                      .+++.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++.... ...+..... ..+          ..+..
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  999999987  233333333221 122222111 111          12224


Q ss_pred             CCCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          108 TGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       108 ~~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ...|+++..+|.....   ..+..   ..+..|    +.+.+.+.+.+++.  ++.+++++.
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS  150 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSS  150 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEE
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEecc
Confidence            5789999988764321   11222   223444    35667777777643  455566543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.73  E-value=0.011  Score=49.32  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=69.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCCH----------HhhhCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL----------ENALTG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal~~  109 (279)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++.+.....+....  .++..+. .-+|.          .+.+-.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            45788889999999999999999998  999999977322222222221  1222221 11121          122458


Q ss_pred             CCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          110 MDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       110 ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      -|++|..||......   .+..   ..+..|    ..+.+.+++.+++.. .+.||++|.
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS  139 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  139 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCcccccc
Confidence            999999999753221   2222   233344    456777777777765 456666653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.72  E-value=0.0052  Score=45.14  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +.+||.|||+ |.+|..-+..|+..|-  +|.+++....... ..+.+.   ..++......+ ++.+.++++|+.+.
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~-~~~~~~---~~i~~~~~~~~-~~dl~~~~lv~~at   80 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQF-TVWANE---GMLTLVEGPFD-ETLLDSCWLAIAAT   80 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHH-HHHHTT---TSCEEEESSCC-GGGGTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHH-HHHHhc---CCceeeccCCC-HHHhCCCcEEeecC
Confidence            3569999999 9999999999999986  8999987653222 222222   12332222223 46799999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.70  E-value=0.008  Score=50.37  Aligned_cols=151  Identities=17%  Similarity=0.205  Sum_probs=85.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------HhhhCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALTG  109 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal~~  109 (279)
                      .+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++....  .++..+. .-+|.          .+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            455779999999999999999997  999999976  333444554432  2222221 11221          122358


Q ss_pred             CCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671          110 MDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (279)
Q Consensus       110 ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~  179 (279)
                      -|++|..||......   .+..   ..+..|    ....+..++.+.+.. .+.||++|.....            .+.|
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~------------~~~~  154 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGL------------TGNV  154 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHH------------HCCT
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECCHHhc------------CCCC
Confidence            999999998654321   2222   233444    455677777777654 5666766532211            1233


Q ss_pred             CCCeeeecchhHHHHHHHHHHHcCCCCCCCcce
Q 023671          180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  212 (279)
Q Consensus       180 ~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~  212 (279)
                      ..-.++.+.---..|-+.+|..++  +..|++-
T Consensus       155 ~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN  185 (251)
T d2c07a1         155 GQANYSSSKAGVIGFTKSLAKELA--SRNITVN  185 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEE
Confidence            333444432112235566777763  4445443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.70  E-value=0.0062  Score=51.35  Aligned_cols=115  Identities=14%  Similarity=0.117  Sum_probs=67.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~ea  106 (279)
                      +.+++.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++....  .++..+. .-++.          .+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHH
Confidence            456889999999999999999999998  999999986  333334444322  1222221 11121          122


Q ss_pred             hC-CCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LT-GMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~-~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +. .-|++|..||.....   ..+..   ..+..|    +.+.+...+.+++.. .+.|+++|.
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS  145 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSS  145 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-ccccccccc
Confidence            22 479999999864321   22222   233444    445667777776654 455666653

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.00098  Score=55.56  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=32.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|.|+||+|-+|..++..|+++|.  +|+++|+++
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            46899999999999999999999998  999999876

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.0023  Score=53.86  Aligned_cols=118  Identities=16%  Similarity=0.161  Sum_probs=68.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADiVI  114 (279)
                      +.+.+.|+||++-+|..+|..|+.+|.  +|++.|+++. ...+..+.......++....    -.....+.+-.-|++|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            456889999999999999999999998  9999999862 11111111100000000000    0001123356899999


Q ss_pred             EccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          115 IPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       115 itag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      ..||.....   ..+..   ..+..|    ..+.+...+.+++.. .+.||+++..
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~  136 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASV  136 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCG
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-cccccccccc
Confidence            999875321   12222   233444    456677777776543 5667776643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.69  E-value=0.012  Score=49.91  Aligned_cols=115  Identities=17%  Similarity=0.253  Sum_probs=69.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeC-CCCH----------Hhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL----------ENA  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~-~~d~----------~ea  106 (279)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++..... ..++..+.. -+|.          .+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999998  999999986  3333444544321 123333211 1121          112


Q ss_pred             hCCCCEEEEccCCCCCCC-----Cchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKPG-----MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g-----~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +-.-|++|..||.....+     ++..   ..+..|+    .+.+...+.+.+. +.+.++++|
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~ii~~s  144 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-KGEIVNVSS  144 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc-ccccccchh
Confidence            347899999998643221     1222   2233443    4666677776653 456666654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.0016  Score=54.61  Aligned_cols=112  Identities=20%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEE-EeCCCC-------HHhhhCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQ-------LENALTG  109 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~-~~~~~d-------~~eal~~  109 (279)
                      +.+++.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++...    .+.. .+..++       ..+.+..
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~----~~~~Dv~~~~~v~~~~~~~~~~~g~   77 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAH----PVVMDVADPASVERGFAEALAHLGR   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCE----EEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCe----EEEEecCCHHHHHHHHHHHHHhcCC
Confidence            345788999999999999999999998  999999986  22111222110    0100 000001       1233457


Q ss_pred             CCEEEEccCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEec
Q 023671          110 MDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       110 ADiVIitag~~~k~g---~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      -|++|..||......   .+..   ..+..|+    .+.+..++.+.+.. .+.+++.|
T Consensus        78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~s  135 (242)
T d1ulsa_          78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTA  135 (242)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEEC
T ss_pred             ceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeec
Confidence            999999999754321   2222   2344454    35555566555433 44454444

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.67  E-value=0.01  Score=49.92  Aligned_cols=115  Identities=13%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCCH----------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d~----------~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++....  .++..+.. -+|.          .+.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            456788999999999999999999998  999999986  333333443321  22222211 1121          112


Q ss_pred             hC-CCCEEEEccCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LT-GMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~-~ADiVIitag~~~k~g---~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +. .-|++|..||......   .+..   ..+..|+    .+.+...+.+.+. +.+.||+++.
T Consensus        83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS  145 (259)
T d2ae2a_          83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS  145 (259)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred             hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-cccccccccc
Confidence            33 4799999999754321   2222   2344554    3455566656554 4566666653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.67  E-value=0.0075  Score=50.55  Aligned_cols=82  Identities=15%  Similarity=0.068  Sum_probs=53.8

Q ss_pred             CCCCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCC---------CCHHh
Q 023671           38 GAAGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ---------PQLEN  105 (279)
Q Consensus        38 ~~~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~---------~d~~e  105 (279)
                      +-+.+++.|+||+|  -+|..+|..|+..|.  +|++.|+++ +...+.++........+.....+         ....+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH
Confidence            45677999999877  499999999999998  999999987 33344444433222222211111         01123


Q ss_pred             hhCCCCEEEEccCCCC
Q 023671          106 ALTGMDLVIIPAGVPR  121 (279)
Q Consensus       106 al~~ADiVIitag~~~  121 (279)
                      .+...|++|.++|...
T Consensus        80 ~~g~id~lV~nag~~~   95 (274)
T d2pd4a1          80 DLGSLDFIVHSVAFAP   95 (274)
T ss_dssp             HTSCEEEEEECCCCCC
T ss_pred             HcCCCCeEEeeccccc
Confidence            3468999999988643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.67  E-value=0.014  Score=49.45  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~ea  106 (279)
                      +.+.+.|+||+|-+|..+|..|+..|.  +|++.|+++  ....+.++.... ...+..+. ...+.          .+.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhh
Confidence            346788999999999999999999998  999999987  233344444321 11222211 11121          122


Q ss_pred             hCCCCEEEEccCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|.++|......   .+   ..+.+..|..    ..+..+...........+++.+.
T Consensus       101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss  163 (294)
T d1w6ua_         101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  163 (294)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccccccccccccccc
Confidence            458999999998653321   11   1222333432    23444444544445555555443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.67  E-value=0.011  Score=49.68  Aligned_cols=116  Identities=15%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---H-------Hhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENA  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~-------~ea  106 (279)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++   ++....++.... ..++..+. .-+|   .       .+.
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            44678889999999999999999998  999999875   222222332211 11222211 1112   1       122


Q ss_pred             hCCCCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      +-.-|++|..||......   .+..   ..+..|    ....+..++.+++.. .+.||+++..
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~  143 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASA  143 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeecccc
Confidence            357999999999754321   1222   234444    456677788877754 4666666543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.002  Score=54.09  Aligned_cols=151  Identities=14%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC----------HHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d----------~~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++...     ...+. .-+|          ..+.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~   75 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGAN-----GKGLMLNVTDPASIESVLEKIRAE   75 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCC-----CcEEEEEecCHHHhhhhhhhhhcc
Confidence            345777889999999999999999998  999999986  23223333211     11110 0111          1222


Q ss_pred             hCCCCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  176 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~  176 (279)
                      +..-|++|..||......   .+..   ..+..|    ..+.+..++.+.+.. .+.||++|....          .  .
T Consensus        76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~----------~--~  142 (243)
T d1q7ba_          76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVG----------T--M  142 (243)
T ss_dssp             TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH----------H--H
T ss_pred             cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhh----------c--C
Confidence            458999999998754321   1212   233444    456777777777654 566777653210          1  1


Q ss_pred             CCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcce
Q 023671          177 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  212 (279)
Q Consensus       177 ~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~  212 (279)
                      +.|..-.++.+.---..|-+.+|..++  +..|++-
T Consensus       143 ~~~~~~~Y~asKaal~~lt~~lA~ela--~~gIrVN  176 (243)
T d1q7ba_         143 GNGGQANYAAAKAGLIGFSKSLAREVA--SRGITVN  176 (243)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence            333333344432222345666777773  4445443

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.008  Score=47.56  Aligned_cols=73  Identities=19%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      ..+.++|.|+|+ |-++.++++.|...+  .+|.++.++.  ++..+.++...   ..+....  .+ ...+.++|+||.
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~--~~-~~~~~~~diiIN   85 (171)
T d1p77a1          15 LRPNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS--MD-SIPLQTYDLVIN   85 (171)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE--GG-GCCCSCCSEEEE
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh--hc-cccccccceeee
Confidence            345679999998 999999999888755  5999999876  33333444322   2233322  12 234789999999


Q ss_pred             ccCC
Q 023671          116 PAGV  119 (279)
Q Consensus       116 tag~  119 (279)
                      |...
T Consensus        86 ~tp~   89 (171)
T d1p77a1          86 ATSA   89 (171)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9643

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.57  E-value=0.014  Score=49.28  Aligned_cols=115  Identities=16%  Similarity=0.187  Sum_probs=69.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeC-CCCH----------Hhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL----------ENA  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~-~~d~----------~ea  106 (279)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++..... ..++..+.. -+|.          .+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            35788899999999999999999998  999999986  3333444544321 123333221 1121          122


Q ss_pred             hCCCCEEEEccCCCCCC--C-----Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKP--G-----MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~--g-----~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +-.-|++|..||.....  .     ++.   ...+..|+    ...+...+.+++. +.++|++.|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            35789999999875322  1     111   11233443    4666677777654 455555544

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.57  E-value=0.0032  Score=52.86  Aligned_cols=114  Identities=16%  Similarity=0.218  Sum_probs=69.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC----------HHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d----------~~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++....     ..+. .-+|          ..+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAA-----RYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGE-----EEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcc-----eEEEeecCCHHHHHHHHHHHHHH
Confidence            345788889999999999999999998  999999987  333333443211     1110 0111          1223


Q ss_pred             hCCCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      +...|++|..||.....   ..+..   +.+..|    ..+.+...+.+.+. +.+.||+++...
T Consensus        78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~  141 (244)
T d1nffa_          78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIE  141 (244)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEeccccc
Confidence            45799999999874322   22222   234444    34556666666665 456677766443

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.56  E-value=0.0012  Score=54.77  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .||.|+||+|-+|..++..|++.|.  +|+++|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~   36 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSA   36 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            4899999999999999999999998  999999976

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.00036  Score=54.15  Aligned_cols=62  Identities=11%  Similarity=0.101  Sum_probs=35.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      |++||+ |.+|++++..|...+.  .+.+++++.  ..+.++.+.....       ..+..++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~~~-------~~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYGGK-------AATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTCCC-------CCSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhccccc-------ccchhhhhccCcEEEEec
Confidence            689998 9999999987755443  234677654  2333333322110       112357789999999986

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.54  E-value=0.019  Score=48.10  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=68.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeC--CCCH----------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG--QPQL----------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~--~~d~----------~ea  106 (279)
                      +.+.|.|+||++-+|..+|..|+.+|.  .+++++.+. ......++........+..+..  +.+.          .+.
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999997  776665443 2212222222221222322211  1111          122


Q ss_pred             hCCCCEEEEccCCCCCCCCchhhHHHhhH----HHHHHHHHHHHHh--CCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKPGMTRDDLFNINA----GIVRTLCEGIAKC--CPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g~~r~d~~~~N~----~i~~~i~~~I~~~--~p~a~viv~T  158 (279)
                      +...|++|..||.....+  -+..+..|+    ...+.+++.+.+.  .+.+.|++++
T Consensus        82 ~g~iDilvnnAG~~~~~~--~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is  137 (254)
T d1sbya1          82 LKTVDILINGAGILDDHQ--IERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC  137 (254)
T ss_dssp             HSCCCEEEECCCCCCTTC--HHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             cCCCCEEEeCCCCCCHHH--HHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence            468999999999654332  233445554    4677777788654  2567777765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.52  E-value=0.026  Score=47.34  Aligned_cols=155  Identities=12%  Similarity=0.068  Sum_probs=85.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCHH----------h
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------N  105 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~~----------e  105 (279)
                      -+.+++.|+||++-+|..++..|++.|.  +|++.|+++  +.....++....  ..+..+. .-++.+          +
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHH
Confidence            3566899999999999999999999998  999999987  222333333322  1222211 111211          1


Q ss_pred             hh-CCCCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHH
Q 023671          106 AL-TGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  174 (279)
Q Consensus       106 al-~~ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~  174 (279)
                      .+ ..-|++|.+||......   .+..   ..+..|    +...+.+.+.+.+.. .+.++++|-....           
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~~~~-----------  147 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGF-----------  147 (258)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGT-----------
T ss_pred             HhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-ccccccccccccc-----------
Confidence            22 24789999998654321   1222   223333    455666677776654 4555555543322           


Q ss_pred             hCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcce
Q 023671          175 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  212 (279)
Q Consensus       175 ~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~  212 (279)
                       .+.|..-.++.+.---..|-+.+|+.++  +..|++-
T Consensus       148 -~~~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN  182 (258)
T d1ae1a_         148 -SALPSVSLYSASKGAINQMTKSLACEWA--KDNIRVN  182 (258)
T ss_dssp             -SCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             -cccccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEE
Confidence             1333333333321111235567788875  4445433

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.50  E-value=0.0037  Score=52.77  Aligned_cols=112  Identities=18%  Similarity=0.174  Sum_probs=69.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---H-------Hhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~-------~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  +.....++..     ++..+. .-++   .       .+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999976  2222233321     111111 0111   1       223


Q ss_pred             hCCCCEEEEccCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      +...|++|..||......   .+.   ...+..|    ....+.+++.+++.. .+.||++|.
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS  138 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeeccccc
Confidence            468999999998753221   121   2234444    346667777776654 566666654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.48  E-value=0.0053  Score=47.62  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=38.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ||++||. |.+|+.+|..|+..++  .++ ++....  ...++..... . .   .  .. .+.+.++|++|++.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~--~~~~~~~~~~-~-~---~--~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFE--KALRHQEEFG-S-E---A--VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTH--HHHHHHHHHC-C-E---E--CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHH--HHHHHHHHcC-C-c---c--cc-cccccceeEEEecc
Confidence            8999998 9999999999998876  554 444331  1122222111 1 1   1  12 35678899999875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.46  E-value=0.00092  Score=53.37  Aligned_cols=85  Identities=19%  Similarity=0.259  Sum_probs=55.6

Q ss_pred             hhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC---CeEEEEeCCCC
Q 023671           28 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQ  102 (279)
Q Consensus        28 ~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~---~~v~~~~~~~d  102 (279)
                      |++++.......+.++|.|+|+ |-++.++++.|...+   +|.++.++.  ++..+.++......   ..+..    .+
T Consensus         5 ~~~~l~~~~~~~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~   76 (177)
T d1nvta1           5 ARMALEEEIGRVKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SG   76 (177)
T ss_dssp             HHHHHHHHHCCCCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----EC
T ss_pred             HHHHHHHhCCCcCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hh
Confidence            5556666565677889999998 999999988885444   999999875  33334444332111   12222    13


Q ss_pred             HHhhhCCCCEEEEccCCC
Q 023671          103 LENALTGMDLVIIPAGVP  120 (279)
Q Consensus       103 ~~eal~~ADiVIitag~~  120 (279)
                      +...+.++|+||.+...+
T Consensus        77 ~~~~~~~~dliIn~tp~g   94 (177)
T d1nvta1          77 LDVDLDGVDIIINATPIG   94 (177)
T ss_dssp             TTCCCTTCCEEEECSCTT
T ss_pred             hhhccchhhhhccCCccc
Confidence            445678999999986543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.018  Score=47.66  Aligned_cols=160  Identities=13%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             CCCCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCH----------H
Q 023671           38 GAAGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL----------E  104 (279)
Q Consensus        38 ~~~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~----------~  104 (279)
                      +-+.+++.|+||+|  -+|..+|..|+++|.  +|++.|+++ ....+.++............. ..+.          .
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCD-VAEDASIDTMFAELG   78 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECC-TTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecc-cchHHHHHHHHHHhh
Confidence            44567899999977  488999999999998  999999987 333333333322111111111 1111          1


Q ss_pred             hhhCCCCEEEEccCCCCCCCC---c----hhh----HHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHH
Q 023671          105 NALTGMDLVIIPAGVPRKPGM---T----RDD----LFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVF  172 (279)
Q Consensus       105 eal~~ADiVIitag~~~k~g~---~----r~d----~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~  172 (279)
                      +.....|++|..++.......   .    ..+    .+..|......+.+.+...- +...++++|.....         
T Consensus        79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~---------  149 (258)
T d1qsga_          79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE---------  149 (258)
T ss_dssp             TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT---------
T ss_pred             hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc---------
Confidence            223467888888765322111   0    111    22334455555555555443 34456665543311         


Q ss_pred             HHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          173 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       173 ~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                         .+.|..-.++.+.---..+-+.+|+.++  ++.|++-.+
T Consensus       150 ---~~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I  186 (258)
T d1qsga_         150 ---RAIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  186 (258)
T ss_dssp             ---SBCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ---cCCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeecc
Confidence               1233333444432112346678888885  666765544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.45  E-value=0.0017  Score=52.89  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+||+|||| |..|.+.|+.|.++|+  +|.|+|.+.
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            459999999 9999999999999998  999999764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.005  Score=51.77  Aligned_cols=150  Identities=18%  Similarity=0.131  Sum_probs=85.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC----------HHhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d----------~~eal  107 (279)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++...      ..+. .-+|          ..+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~------~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGA------VFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTE------EEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCC------eEEEccCCCHHHHHHHHHHHHHhc
Confidence            45788999999999999999999998  999999986  22222222211      1111 1111          12334


Q ss_pred             CCCCEEEEccCCCCCCC----Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhC
Q 023671          108 TGMDLVIIPAGVPRKPG----MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  176 (279)
Q Consensus       108 ~~ADiVIitag~~~k~g----~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~  176 (279)
                      -.-|++|..||.....+    .+..   ..+..|    ..+.+..++.+++.  .+.||++|....          .  .
T Consensus        78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~----------~--~  143 (250)
T d1ydea1          78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVG----------A--I  143 (250)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHH----------H--H
T ss_pred             CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccccc----------c--c
Confidence            57899999998643322    1222   223444    45677777777764  366666653221          1  1


Q ss_pred             CCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          177 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       177 ~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                      +.|..-.++.+.---..|-+.+|..++  +..|++-.+
T Consensus       144 ~~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I  179 (250)
T d1ydea1         144 GQAQAVPYVATKGAVTAMTKALALDES--PYGVRVNCI  179 (250)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             cccCcchhHHHHhhHHHHHHHHHHHhc--ccCeEEEEE
Confidence            233333444432112235566777773  555554433

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.43  E-value=0.0012  Score=51.66  Aligned_cols=70  Identities=20%  Similarity=0.413  Sum_probs=45.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      -||+|+||||.+|.-+...|...++ ..++.++..++..|+..  ...  ........ .  .+..+.++|+++++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~--~~~--~~~~~~~~-~--~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFK--DQDITIEE-T--TETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE--EET--TEEEEEEE-C--CTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc--ccc--CCcccccc-c--chhhhhhhhhhhhccC
Confidence            3899999999999999998887763 56888886544333322  111  11222211 1  1356789999999864

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0038  Score=49.38  Aligned_cols=74  Identities=22%  Similarity=0.192  Sum_probs=43.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +.+||+|+|++|.+|+.++..+.+.+-+.=+..+|.........|+.....  ...+..   +.++++.++.+|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            457999999999999999998887653222245565432111122222211  122222   23556778999988754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.013  Score=45.64  Aligned_cols=134  Identities=14%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      -.+..+|.|+|+ |.+|...+..+...|.  +++.+|.++. ...+.++.-    ..+.............++.|++|.+
T Consensus        28 ~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGa----d~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          28 AGPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGA----DEVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTC----SEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccCC----cEEEECchhhHHHHhcCCCceeeee
Confidence            456679999998 9999999888888886  6778887652 222232221    1111111111122335689999999


Q ss_pred             cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee---cchhHHH
Q 023671          117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV---TMLDVVR  193 (279)
Q Consensus       117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~---t~lds~R  193 (279)
                      .|.+.    +           +.   ..+.-..|.+.++.+.-|.+....+-...+.    +...+++|.   +.-|..+
T Consensus       101 ~g~~~----~-----------~~---~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~----~k~~~i~Gs~~~~~~d~~e  158 (168)
T d1uufa2         101 VAAPH----N-----------LD---DFTTLLKRDGTMTLVGAPATPHKSPEVFNLI----MKRRAIAGSMIGGIPETQE  158 (168)
T ss_dssp             CSSCC----C-----------HH---HHHTTEEEEEEEEECCCC-------CHHHHH----TTTCEEEECCSCCHHHHHH
T ss_pred             eecch----h-----------HH---HHHHHHhcCCEEEEeccCCCCcccccHHHHH----HCCcEEEEEeecCHHHHHH
Confidence            87541    0           11   2223445888888886654432211111111    234578887   2455555


Q ss_pred             HHHHHHH
Q 023671          194 ANTFVAE  200 (279)
Q Consensus       194 ~~~~la~  200 (279)
                      +-.++++
T Consensus       159 ~l~l~a~  165 (168)
T d1uufa2         159 MLDFCAE  165 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.024  Score=48.66  Aligned_cols=121  Identities=11%  Similarity=0.046  Sum_probs=72.6

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc---CCCeEEEEeC-CCCH------
Q 023671           36 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLG-QPQL------  103 (279)
Q Consensus        36 ~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~---~~~~v~~~~~-~~d~------  103 (279)
                      +|.-+.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.+|....   ...++..+.. -+|.      
T Consensus         7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~   84 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL   84 (297)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHH
Confidence            3344567899999999999999999999998  999999986  334444554321   1223333221 1221      


Q ss_pred             ----HhhhCCCCEEEEccCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671          104 ----ENALTGMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       104 ----~eal~~ADiVIitag~~~k~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                          .+.+..-|++|..||......   .+.   ...+..|+    .+.+..++.+.+... +.++++|.
T Consensus        85 ~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss  153 (297)
T d1yxma1          85 VKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIV  153 (297)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECC
T ss_pred             HHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccc
Confidence                122457899999998653221   121   22344553    455666666665543 44555543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.34  E-value=0.0019  Score=54.03  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=33.2

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -.+++||+|||| |..|.+.|+.|.+.|+  +|.++|..+
T Consensus        27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            356679999999 9999999999999998  999999765

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.31  E-value=0.021  Score=49.14  Aligned_cols=113  Identities=15%  Similarity=0.247  Sum_probs=67.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c------hhH----HhhhhcccCCCeEEE-EeCCCCH-----
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T------PGV----TADISHMDTGAVVRG-FLGQPQL-----  103 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~------~g~----~~DL~~~~~~~~v~~-~~~~~d~-----  103 (279)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|++. .      ...    ..++....  ..... .....+.     
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc--cccccccchHHHHHHHHH
Confidence            34688889999999999999999998  999999864 1      111    12222111  11111 1111121     


Q ss_pred             --HhhhCCCCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEec
Q 023671          104 --ENALTGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       104 --~eal~~ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                        .+.+-.-|++|..||......   .+..   ..+..|    +...+..++.+++.. .+.||++|
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~is  148 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTA  148 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeC
Confidence              123457999999999754321   2222   234444    457777788887765 45666664

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.28  E-value=0.014  Score=48.77  Aligned_cols=112  Identities=16%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             EE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------HhhhC
Q 023671           43 KV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT  108 (279)
Q Consensus        43 KI-~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal~  108 (279)
                      || .|+||++-+|..+|..|+++|.  +|++.|+++  ++..+.++....  .++..+. .-+|.          .+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            45 6789999999999999999998  999999986  333344454332  2222221 11121          22245


Q ss_pred             CCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh-----CCCceEEEec
Q 023671          109 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-----CPNATVNLIS  158 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~-----~p~a~viv~T  158 (279)
                      .-|++|..||......   .+.   .+.+..|+.-.-.+++.+.++     ...+.+++++
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~  139 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIA  139 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEEC
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccc
Confidence            7999999999754321   122   234555655444444444321     2335566554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.25  E-value=0.003  Score=53.22  Aligned_cols=114  Identities=14%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEE-EeCCCC-------HHhhhCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQ-------LENALTGM  110 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~-~~~~~d-------~~eal~~A  110 (279)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++.....  .+.. .+...+       ..+.+..-
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~Dv~~~~~~~~~~~~~~~~~g~i   81 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSM--FVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEE--EECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeE--EEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            45788889999999999999999998  999999986  2233333322110  0000 000001       12334588


Q ss_pred             CEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          111 DLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       111 DiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      |++|..||.....   ..+..   ..+..|    ....+...+.+++  ..+.||+++..
T Consensus        82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~isS~  139 (253)
T d1hxha_          82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMASV  139 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEECCG
T ss_pred             CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceecccch
Confidence            9999999975322   12222   234445    4466777777754  24777777643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0081  Score=48.28  Aligned_cols=90  Identities=23%  Similarity=0.312  Sum_probs=60.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..++|+|+|. |.+|..++..+..-+.  +|..+|.......    .     ....    ..++++.++.||+|++++..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~----~-----~~~~----~~~l~ell~~sDii~i~~pl  106 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL----G-----NATQ----VQHLSDLLNMSDVVSLHVPE  106 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC----T-----TCEE----CSCHHHHHHHCSEEEECCCS
T ss_pred             cceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh----h-----hhhh----hhhHHHHHhhccceeecccC
Confidence            4569999998 9999999999888887  9999997541100    0     0011    13578889999999998754


Q ss_pred             CCCC-CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          120 PRKP-GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       120 ~~k~-g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .... +.       -|.    +   .++...+++++|+++=
T Consensus       107 t~~T~~l-------i~~----~---~l~~mk~~a~lIN~aR  133 (188)
T d1sc6a1         107 NPSTKNM-------MGA----K---EISLMKPGSLLINASR  133 (188)
T ss_dssp             STTTTTC-------BCH----H---HHHHSCTTEEEEECSC
T ss_pred             Ccchhhh-------ccH----H---HHhhCCCCCEEEEcCc
Confidence            3211 21       111    2   2334457899999863

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.24  E-value=0.0023  Score=52.62  Aligned_cols=34  Identities=15%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+||+|||| |..|.++|..|.+.|+  ++.++|.++
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            469999999 9999999999999998  999999753

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.20  E-value=0.0032  Score=49.73  Aligned_cols=66  Identities=20%  Similarity=0.388  Sum_probs=43.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      +++||+|+|+ |.+|+.++..+...+-+.-+.++|.++...         .......   ..++.+...+.|+|+++..
T Consensus         2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~---------~~~~~~~---~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLD---------TKTPVFD---VADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCS---------SSSCEEE---GGGGGGTTTTCSEEEECSC
T ss_pred             CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccc---------ccccccc---chhhhhhccccceEEEeCC
Confidence            4679999998 999999888887765444445666654210         1122222   2345566789999999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0093  Score=46.92  Aligned_cols=81  Identities=14%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             hhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhh
Q 023671           29 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENA  106 (279)
Q Consensus        29 ~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~ea  106 (279)
                      -+++....-..+.++|.|+|| |-.+.++++.|...+.  +|.+++++..  +..+..+.+.   ..++...  .+ ...
T Consensus         6 ~~~l~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~~--~~-~~~   76 (170)
T d1nyta1           6 LSDLERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQALS--MD-ELE   76 (170)
T ss_dssp             HHHHHHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEECC--SG-GGT
T ss_pred             HHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---ccccccc--cc-ccc
Confidence            344444433455679999999 9999999999999886  7999988652  2222222221   2333321  11 223


Q ss_pred             hCCCCEEEEccC
Q 023671          107 LTGMDLVIIPAG  118 (279)
Q Consensus       107 l~~ADiVIitag  118 (279)
                      ..++|+||.|..
T Consensus        77 ~~~~dliIN~Tp   88 (170)
T d1nyta1          77 GHEFDLIINATS   88 (170)
T ss_dssp             TCCCSEEEECCS
T ss_pred             ccccceeecccc
Confidence            578999999853

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.17  E-value=0.072  Score=44.52  Aligned_cols=114  Identities=19%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC----------HHhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ----------LENA  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d----------~~ea  106 (279)
                      .+++.|+||++-+|..++..|+..|.  +|++.|++.   ++..+.++....  .++..+. ...|          ..+.
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  999999875   222233333322  1222211 1112          1233


Q ss_pred             hCCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T  158 (279)
                      +..-|++|..+|......   .+   -.+.+..|+.-.-.+.+.+.++- ..+.+++++
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            467899999998653321   11   12344556555555555555443 345555554

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.14  E-value=0.027  Score=47.21  Aligned_cols=114  Identities=15%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC-CCeEEEEeC-CCCH----------Hhhh
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL----------ENAL  107 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~-~~d~----------~eal  107 (279)
                      +.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++..... ..++..+.. -++.          .+.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4567789999999999999999998  999999986  3334445544321 122333211 1121          1223


Q ss_pred             CCCCEEEEccCCCCCC-------CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEec
Q 023671          108 TGMDLVIIPAGVPRKP-------GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 ~~ADiVIitag~~~k~-------g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      ...|++|..||.....       ..+..   ..+..|    +...+...+.+++. ..++|++.|
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            5799999999864211       11222   233344    34667777777654 345555544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.13  E-value=0.0019  Score=52.94  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |||+|||| |..|.+.|..|.+.|+  +|.|++..+
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            68999999 9999999999999998  999999765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0094  Score=47.15  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=49.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  119 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~  119 (279)
                      ..++++|+|- |.+|..+|..+...|.  +|..+|+++.+.... ..+.   ..+      ..+++++..+|+||.+.|.
T Consensus        23 ~Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG---~~v------~~~~~a~~~adivvtaTGn   89 (163)
T d1li4a1          23 AGKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEG---YEV------TTMDEACQEGNIFVTTTGC   89 (163)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT---CEE------CCHHHHTTTCSEEEECSSC
T ss_pred             cCCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCc---eEe------eehhhhhhhccEEEecCCC
Confidence            4568999998 9999999999998887  999999987322211 1111   111      1367899999999988764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.09  E-value=0.0028  Score=51.67  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +||+|||| |..|.+.|+.|.+.|+  +|.++|..+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            59999999 9999999999999998  999999765

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.02  E-value=0.011  Score=50.23  Aligned_cols=111  Identities=21%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC----------HHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d----------~~ea  106 (279)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  +.....++..     ++..+. .-++          ..+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVAR   76 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHH
Confidence            345889999999999999999999998  999999976  2222222221     111111 0111          1233


Q ss_pred             hCCCCEEEEccCCCCCCC-------Cch----hhHHHhh----HHHHHHHHHHHHHhCCCceEEEec
Q 023671          107 LTGMDLVIIPAGVPRKPG-------MTR----DDLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       107 l~~ADiVIitag~~~k~g-------~~r----~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                      +...|++|..||......       +..    ...+..|    +...+...+.+++.. ..+|++.|
T Consensus        77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S  142 (276)
T d1bdba_          77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTIS  142 (276)
T ss_dssp             HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECC
T ss_pred             hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeee
Confidence            568999999998643211       111    1223344    456777777777653 34444443

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0025  Score=55.22  Aligned_cols=108  Identities=20%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCC--chhHHhhhhccc-CCCeEEEEeCCCCHHhhhC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLGQPQLENALT  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~----~~~-----~~ev~L~D~~~--~~g~~~DL~~~~-~~~~v~~~~~~~d~~eal~  108 (279)
                      ..||.|.|| |..|..++..|..    .|+     .++++++|.+-  .++..-++.... .+..........++.++++
T Consensus        25 d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~  103 (294)
T d1pj3a1          25 EHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN  103 (294)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHH
Confidence            458999999 9999999876543    343     25799999865  122111111110 0000000011235777765


Q ss_pred             --CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671          109 --GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  163 (279)
Q Consensus       109 --~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~  163 (279)
                        +.|++|-+.+.+   |-           +.+++++.|.+.+++.+|+-.|||..-
T Consensus       104 ~~kptvliG~S~~~---g~-----------ft~evi~~Ma~~~~~PIIFaLSNPt~~  146 (294)
T d1pj3a1         104 ILKPSTIIGVAGAG---RL-----------FTPDVIRAMASINERPVIFALSNPTAQ  146 (294)
T ss_dssp             HHCCSEEEECCCSS---CC-----------SCHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred             hcCCceEEEecCCC---Cc-----------CCHHHHHHHHhcCCCcEEEEccCCCCc
Confidence              888888876544   21           135777788889999999999999653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0083  Score=47.76  Aligned_cols=78  Identities=19%  Similarity=0.238  Sum_probs=50.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH----HhhhhcccCCCeEEEEeC--CCCHHhhhCCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV----TADISHMDTGAVVRGFLG--QPQLENALTGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~----~~DL~~~~~~~~v~~~~~--~~d~~eal~~AD  111 (279)
                      .+.++|.|+|+ |-+|.++++.|...+ +.+|++++++.. ...    +.++.... ...+.....  ..++.+.+.++|
T Consensus        16 l~~k~vlIlGa-GGaarai~~al~~~g-~~~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          16 IKGKTMVLLGA-GGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHHTCS
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHhhcC-CceEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchhhhhcccc
Confidence            35579999998 999999999998887 469999999762 122    22232221 222222211  122445678999


Q ss_pred             EEEEccCC
Q 023671          112 LVIIPAGV  119 (279)
Q Consensus       112 iVIitag~  119 (279)
                      +||.+...
T Consensus        93 iiIN~Tp~  100 (182)
T d1vi2a1          93 ILTNGTKV  100 (182)
T ss_dssp             EEEECSST
T ss_pred             eeccccCC
Confidence            99998643

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.97  E-value=0.009  Score=47.00  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=49.4

Q ss_pred             hhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh
Q 023671           28 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL  107 (279)
Q Consensus        28 ~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal  107 (279)
                      |.+.+.... ..+.+||.|+|+ |-++.++++.|...+. .+|.+++++..+  +..|.+...   .....   .+  ..
T Consensus         5 ~~~~l~~~~-~~~~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~k--a~~L~~~~~---~~~~~---~~--~~   71 (167)
T d1npya1           5 IVKLIEKYH-LNKNAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKT--GQYLAALYG---YAYIN---SL--EN   71 (167)
T ss_dssp             HHHHHHHTT-CCTTSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHH--HHHHHHHHT---CEEES---CC--TT
T ss_pred             HHHHHHHcC-CCCCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHH--HHHHHHhhh---hhhhh---cc--cc
Confidence            444554443 235678999999 9999999999998884 689999887522  222222111   11111   11  24


Q ss_pred             CCCCEEEEccCC
Q 023671          108 TGMDLVIIPAGV  119 (279)
Q Consensus       108 ~~ADiVIitag~  119 (279)
                      .++|+||.|...
T Consensus        72 ~~~DliINaTpi   83 (167)
T d1npya1          72 QQADILVNVTSI   83 (167)
T ss_dssp             CCCSEEEECSST
T ss_pred             cchhhheecccc
Confidence            689999998543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.96  E-value=0.013  Score=51.66  Aligned_cols=70  Identities=20%  Similarity=0.354  Sum_probs=49.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..++|||+ |..+...+..+.. .+ +.+|.++|+++  ....+.++.... ...+..   .+++++++++||+|+.+.
T Consensus       129 ~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         129 RKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEYS-GLTIRR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTCT-TCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             ceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhcc-CCCcee---cCCHHHHHhcCCceeecc
Confidence            48999998 9998877765544 44 68999999986  333444554321 234443   357899999999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.04  Score=42.01  Aligned_cols=99  Identities=8%  Similarity=-0.018  Sum_probs=60.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC---HH-hhhCCCCEE
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LE-NALTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d---~~-eal~~ADiV  113 (279)
                      +..|.|+|. |.+|..++..|...+.  +++++|.++  ......++...    .+..+.+ .++   ++ ..+.+||.|
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHhccccCCEE
Confidence            457999999 9999999999999987  999999876  22222222221    1121111 122   22 225789999


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe-cCCC
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPV  161 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~-TNPv  161 (279)
                      |++.+.         |  ..|+.    ++..+++.+|+..++.- .+|-
T Consensus        76 i~~~~~---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~  109 (153)
T d1id1a_          76 LALSDN---------D--ADNAF----VVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             EECSSC---------H--HHHHH----HHHHHHHHTSSSCEEEECSSGG
T ss_pred             EEcccc---------H--HHHHH----HHHHHHHhCCCCceEEEEcCHH
Confidence            998531         1  33443    34455677888755554 4554

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.95  E-value=0.0042  Score=53.83  Aligned_cols=42  Identities=24%  Similarity=0.286  Sum_probs=35.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD   84 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~D   84 (279)
                      +.+||+|||| |.-|.++|..|.+.|+  +|.++|.++ .-|.+.+
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~~~t   43 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNSYD   43 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGGCE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCeeeE
Confidence            3569999999 9999999999999988  999999887 4555533

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.94  E-value=0.003  Score=49.82  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++||+|||| |..|...|..|.+.|+ ++|.++|..+
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            469999999 9999999999999997 3599999876

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.052  Score=42.08  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhh--------CC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL--------TG  109 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal--------~~  109 (279)
                      .+..+|.|+|+ |.+|...+..+...|. .+|+..|.++ ....+.++.    ...+... ...+..+..        .+
T Consensus        25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G----a~~~~~~-~~~~~~~~~~~~~~~~g~g   97 (171)
T d1pl8a2          25 TLGHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG----ADLVLQI-SKESPQEIARKVEGQLGCK   97 (171)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT----CSEEEEC-SSCCHHHHHHHHHHHHTSC
T ss_pred             CCCCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC----Ccccccc-cccccccccccccccCCCC
Confidence            34458999998 9999999988888874 5899999876 222233322    1111111 122322221        47


Q ss_pred             CCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       110 ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      +|+||.+.|.+               ..+...   +.-..|.+.++++..|.+
T Consensus        98 ~Dvvid~~G~~---------------~~~~~a---~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          98 PEVTIECTGAE---------------ASIQAG---IYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             CSEEEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCCS
T ss_pred             ceEEEeccCCc---------------hhHHHH---HHHhcCCCEEEEEecCCC
Confidence            99999998632               112222   222347888888876544

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0045  Score=49.72  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+++||+|||| |..|.+.|..|.++|+  +|.|+|..+
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            34679999999 9999999999999999  999999876

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.86  E-value=0.024  Score=46.98  Aligned_cols=115  Identities=19%  Similarity=0.221  Sum_probs=69.0

Q ss_pred             E-EEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------
Q 023671           43 K-VAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------  103 (279)
Q Consensus        43 K-I~IIGA~G~VG~~la~~L~~~~~-----~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------  103 (279)
                      + |.|+||++-+|..+|..|+..|.     ...|+++|+++  ++....++....  .++..+. .-+|.          
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            5 45789999999999999999885     12489999876  333334444321  2222221 11221          


Q ss_pred             HhhhCCCCEEEEccCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCceEEEecCC
Q 023671          104 ENALTGMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  160 (279)
Q Consensus       104 ~eal~~ADiVIitag~~~k~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNP  160 (279)
                      .+.+..-|++|..||......   .+.   ...+..|    +.+.+...+.+++.. .+.+++++.-
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~  145 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSV  145 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEech
Confidence            223457999999998754321   121   2234445    456777788777654 5666666543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0037  Score=50.00  Aligned_cols=80  Identities=19%  Similarity=0.213  Sum_probs=52.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~----~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      ..+.++|+|||-|.-||..++.+|.+++-  .+.+.|.+..    ......+.+.. ...+..+. .+++++....||+|
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~lk~~~~~aDIv  101 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHH-VEDLGEYS-EDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCE-EEEEEECC-HHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeec-cccccccc-hhHHhhccccCCEE
Confidence            35567999999978899999999999886  8888887541    11112222221 11222221 12366777899999


Q ss_pred             EEccCCCC
Q 023671          114 IIPAGVPR  121 (279)
Q Consensus       114 Iitag~~~  121 (279)
                      |..+|.|.
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.83  E-value=0.066  Score=41.22  Aligned_cols=99  Identities=16%  Similarity=0.092  Sum_probs=59.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEe-CCCCHH---hhh-----C
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQLE---NAL-----T  108 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~~~d~~---eal-----~  108 (279)
                      .+..+|.|+|+ |.+|...+..+...|.  +|+.+|.++ ....+.++...    ...... ...+..   +.+     .
T Consensus        25 ~~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga~----~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          25 QLGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGAD----VTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTCS----EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCCc----EEEeccccccccchhhhhhhccccc
Confidence            44568999997 9999999998888886  899999876 22233333211    111111 011211   111     4


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      ++|+||.++|.+               ..+.   ..++-..|.+.++++..|.+
T Consensus        98 g~D~vid~~g~~---------------~~~~---~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          98 LPNVTIDCSGNE---------------KCIT---IGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             CCSEEEECSCCH---------------HHHH---HHHHHSCTTCEEEECSCCSS
T ss_pred             CCceeeecCCCh---------------HHHH---HHHHHHhcCCceEEEecCCC
Confidence            699999998633               1112   22333458899888876654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.80  E-value=0.0078  Score=46.99  Aligned_cols=65  Identities=23%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             cEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhC-CCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~-la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~-~ADiVIita  117 (279)
                      +||+|||+ |.+|.. ....+...+. .+++++|.++.  ...+.++...    .  .   .+|+++.++ +.|+|+++.
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~----~--~---~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYRVS----A--T---CTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTTCC----C--C---CSSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhcccc----c--c---cccHHHhcccccceecccc
Confidence            69999998 999976 4455544432 38889998762  2222222211    1  1   134445443 789999975

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.015  Score=45.06  Aligned_cols=66  Identities=12%  Similarity=0.209  Sum_probs=41.7

Q ss_pred             CcEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCchh--HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~-la~~L~~~~~~~ev~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ++||+|||+ |.+|.. ....+...+-+.-+.++|.++...  .+.++.     .  ..   .+++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-----~--~~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-----I--PY---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-----C--CB---CSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-----c--cc---cccchhhhhhcccccccc
Confidence            369999998 999985 455666554444456888876322  222221     1  11   235666679999999875

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.70  E-value=0.051  Score=45.11  Aligned_cols=111  Identities=8%  Similarity=-0.004  Sum_probs=65.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCH-------HhhhCCCCEEE
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL-------ENALTGMDLVI  114 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~-------~eal~~ADiVI  114 (279)
                      ...|+||++-+|..+|..|++.|.  +|++.|++. ...+...+........+..   ..+.       .+.+-.-|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEE
Confidence            356999999999999999999998  999999875 1111111111111111111   1122       23345899999


Q ss_pred             EccCCCCCCC----Cchhh---HHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671          115 IPAGVPRKPG----MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       115 itag~~~k~g----~~r~d---~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      ..||.....+    .+..|   .+..|    ....+.+++.+++.. .+.||++|.
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS  131 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITS  131 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeecccc
Confidence            9988643221    22222   22333    456778888887765 455666654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.68  E-value=0.019  Score=47.63  Aligned_cols=153  Identities=16%  Similarity=0.130  Sum_probs=86.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC----------HHhh
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d----------~~ea  106 (279)
                      +.+++.|+||++.+|..+|..|+..|.  +|++.|+++  +.....++..     ++..+.. -.+          ..+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS-----SEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----ceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345888999999999999999999998  999999986  2222222321     1111110 111          1233


Q ss_pred             hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD  179 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~  179 (279)
                      +..-|++|..||.....   ..+.   .+.+..|+.....+.+...++.. ...++++|.....-.+             
T Consensus        77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~-------------  143 (241)
T d2a4ka1          77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAF-------------  143 (241)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHH-------------
T ss_pred             hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccccc-------------
Confidence            46799999998864321   1222   23456677777777776666653 3445555544322211             


Q ss_pred             CCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          180 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       180 ~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                      ..-.++.+..--..|-+.+|+.++  +..|++-.+
T Consensus       144 ~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  176 (241)
T d2a4ka1         144 GLAHYAAGKLGVVGLARTLALELA--RKGVRVNVL  176 (241)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEE
T ss_pred             CccccchhhHHHHHHHHHHHHHHh--HhCCEEeee
Confidence            011233432222346778888884  445554443

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.62  E-value=0.073  Score=43.98  Aligned_cols=153  Identities=18%  Similarity=0.173  Sum_probs=84.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH----------HhhhC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT  108 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal~  108 (279)
                      =|.|+||++-+|..++..|+..|.  +|++.|.+.   ++....++....  .++..+. .-+|.          .+.+.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            356789999999999999999998  999988755   222223333221  1222221 11121          12235


Q ss_pred             CCCEEEEccCCCCCCC---Cchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCC
Q 023671          109 GMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  178 (279)
Q Consensus       109 ~ADiVIitag~~~k~g---~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~  178 (279)
                      .-|++|..||......   .+..   ..+..|    +...+..++.+.+. ..+.||++|.-..          .  .+.
T Consensus        79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~----------~--~~~  145 (244)
T d1edoa_          79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVG----------L--IGN  145 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHH----------H--HCC
T ss_pred             CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhh----------c--CCC
Confidence            7899999998754321   1211   233344    45677777777765 4566777654221          1  134


Q ss_pred             CCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          179 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       179 ~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                      |..-.++.+.---..|-+.+|..++  +..|++-.+
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I  179 (244)
T d1edoa_         146 IGQANYAAAKAGVIGFSKTAAREGA--SRNINVNVV  179 (244)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEE
Confidence            4333444432222345667788873  445544333

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.56  E-value=0.0084  Score=44.72  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=32.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+.++|+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            34569999999 9999999999999998  999999865

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.55  E-value=0.0059  Score=48.67  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |||+|||| |++|..+|..|...+.-.+|.+++.++
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999 999999999998765555999998754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.55  E-value=0.0059  Score=46.83  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +||+|||| |++|..+|..|...+.-.+|.|+|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            59999999 999999999998876545999999876

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.54  E-value=0.0069  Score=49.70  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++||+|||| |..|.++|..|.+.|+ ..|.+++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            579999999 9999999999999984 3889999865

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.026  Score=44.75  Aligned_cols=57  Identities=19%  Similarity=0.391  Sum_probs=43.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||.+.-||..++..|.+++-  .+.+++...                       .++.+.+++||+||.++|
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~t-----------------------~~l~~~~~~aDivi~a~G   91 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSKT-----------------------AHLDEEVNKGDILVVATG   91 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTTC-----------------------SSHHHHHTTCSEEEECCC
T ss_pred             cccceEEEEecCCccchHHHHHHHhccC--ceEEEeccc-----------------------ccHHHHHhhccchhhccc
Confidence            4567999999988899999999999886  777776432                       234556777888887777


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      .|
T Consensus        92 ~~   93 (170)
T d1a4ia1          92 QP   93 (170)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.51  E-value=0.077  Score=44.01  Aligned_cols=76  Identities=18%  Similarity=0.237  Sum_probs=48.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH----------Hhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~ea  106 (279)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.+...   .+.....+....  .++..+. ..+|.          .+.
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999998  898866544   222233333322  1222221 11121          223


Q ss_pred             hCCCCEEEEccCCC
Q 023671          107 LTGMDLVIIPAGVP  120 (279)
Q Consensus       107 l~~ADiVIitag~~  120 (279)
                      +-.-|++|..||..
T Consensus        82 ~g~idilinnag~~   95 (259)
T d1ja9a_          82 FGGLDFVMSNSGME   95 (259)
T ss_dssp             HSCEEEEECCCCCC
T ss_pred             cCCCcEEEeccccc
Confidence            45799999999874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.49  E-value=0.0096  Score=44.36  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            459999999 9999999999999998  999999876

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.49  E-value=0.035  Score=45.87  Aligned_cols=103  Identities=20%  Similarity=0.229  Sum_probs=66.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh--------HHhhhhcccCCCeEEEEeCCCCHHhhhC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--------VTADISHMDTGAVVRGFLGQPQLENALT  108 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g--------~~~DL~~~~~~~~v~~~~~~~d~~eal~  108 (279)
                      .+..||.+.|| |..|..++..+...+. ++++++|.+-  .+.        ...++.+......     ...++.++++
T Consensus        24 l~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~   96 (222)
T d1vl6a1          24 IEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----LSGDLETALE   96 (222)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----CCSCHHHHHT
T ss_pred             hhhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchh-----hhcchHhhcc
Confidence            34569999999 9999999998887664 7999999864  111        1111111111111     1236788999


Q ss_pred             CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHH
Q 023671          109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP  166 (279)
Q Consensus       109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~  166 (279)
                      ++++++-+..    +|.-+.              +.+++.+++.+|+-.|||.....+
T Consensus        97 g~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~  136 (222)
T d1vl6a1          97 GADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDP  136 (222)
T ss_dssp             TCSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCH
T ss_pred             Ccceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhh
Confidence            9998776542    222111              245666888999999999876654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.48  E-value=0.007  Score=52.23  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++||+|||| |..|..+|..|+..+...+|++++.++
T Consensus         4 ~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           4 IRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            458999999 999999999998887667999999875

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0089  Score=49.10  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +..||+|||| |.-|.+.|+.|.+.|+  +|.+++..+
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            3458999999 9999999999999998  999998765

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=95.33  E-value=0.01  Score=51.48  Aligned_cols=109  Identities=13%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTG  109 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~----~~~~-----~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~  109 (279)
                      ...||.|.|| |..|..++..|..    .|+-     ++++++|.+- ......|+..... ...+......++.+.++.
T Consensus        24 ~d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~-~~a~~~~~~~~l~~~i~~  101 (308)
T d1o0sa1          24 SQEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHV-QFAKDMPETTSILEVIRA  101 (308)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGT-TTCBSSCCCCCHHHHHHH
T ss_pred             HHcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHH-HHHHhcccCCcHHHHHhc
Confidence            3458999999 9999998876543    3432     3699999865 1111123332210 101111112345555543


Q ss_pred             C--CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCch
Q 023671          110 M--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  164 (279)
Q Consensus       110 A--DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~  164 (279)
                      +  +++|-+.+.+   |.           +.+++++.|.+.+++.+|+-.|||....
T Consensus       102 ~kptvliG~s~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         102 ARPGALIGASTVR---GA-----------FNEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             HCCSEEEECSSCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             cccccEEeccccc---CC-----------CCHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            3  5666665543   21           1346667888899999999999997633

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.31  E-value=0.045  Score=42.95  Aligned_cols=37  Identities=22%  Similarity=0.138  Sum_probs=31.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+..+|.|+|| |.+|...+..+...|. ..|+.+|.++
T Consensus        27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~   63 (182)
T d1vj0a2          27 FAGKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSP   63 (182)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCH
T ss_pred             CCCCEEEEECC-Cccchhheeccccccc-cccccccccc
Confidence            34569999998 9999999888888884 4899999977

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.30  E-value=0.073  Score=37.85  Aligned_cols=74  Identities=19%  Similarity=0.335  Sum_probs=51.2

Q ss_pred             CCCCcEEEEEcCCCchH-HHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           38 GAAGFKVAILGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG-~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      -.+.+||-+||- |-+| +++|..|..+|+  +|...|.... ....+|.+.  ...+..  +. + .+.+.++|+||.+
T Consensus         5 ~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~--Gi~v~~--g~-~-~~~i~~~d~vV~S   74 (96)
T d1p3da1           5 MRRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQA--GAKIYI--GH-A-EEHIEGASVVVVS   74 (96)
T ss_dssp             CTTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHT--TCEEEE--SC-C-GGGGTTCSEEEEC
T ss_pred             chhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHC--CCeEEE--CC-c-cccCCCCCEEEEC
Confidence            345679999999 7777 566899999999  9999998752 222334443  223332  22 2 3568999999999


Q ss_pred             cCCCC
Q 023671          117 AGVPR  121 (279)
Q Consensus       117 ag~~~  121 (279)
                      .+++.
T Consensus        75 ~AI~~   79 (96)
T d1p3da1          75 SAIKD   79 (96)
T ss_dssp             TTSCT
T ss_pred             CCcCC
Confidence            88873

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.30  E-value=0.011  Score=44.67  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++||+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            3459999999 9999999999999998  999999865

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.27  E-value=0.012  Score=43.14  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++||+|||| |++|.-+|..+...|.  +|.+++..+
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            3579999999 9999999999999997  999999766

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.021  Score=45.14  Aligned_cols=57  Identities=21%  Similarity=0.455  Sum_probs=44.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++|+|||.+..||..++..|.+++.  .|...+..                       +.++.+.+++||+||.++|
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G   89 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVG   89 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhcc
Confidence            3467999999988899999999998886  66666432                       2245677889999999988


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      .|
T Consensus        90 ~p   91 (166)
T d1b0aa1          90 KP   91 (166)
T ss_dssp             CT
T ss_pred             Cc
Confidence            65

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.012  Score=43.38  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++||+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            469999999 9999999999999997  999999876

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.015  Score=45.95  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=40.9

Q ss_pred             CCcEEEEEcCCCchHHHH-HHHHHhCCCCcEEE-EEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEE
Q 023671           40 AGFKVAILGAAGGIGQPL-AMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVII  115 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~l-a~~L~~~~~~~ev~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIi  115 (279)
                      +++||+|||+ |.+|..+ +..+...+...+|+ ++|.++...  ..+.+....+  ..+   +|+++.++  +.|+|++
T Consensus         2 kkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~~~~--~~~---~~~~ell~~~~id~v~I   73 (181)
T d1zh8a1           2 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMVGNP--AVF---DSYEELLESGLVDAVDL   73 (181)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHHSSC--EEE---SCHHHHHHSSCCSEEEE
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhcccccc--cee---eeeeccccccccceeec
Confidence            4679999998 9999864 55665544322555 778875221  2222111111  222   36767664  6888998


Q ss_pred             cc
Q 023671          116 PA  117 (279)
Q Consensus       116 ta  117 (279)
                      +.
T Consensus        74 ~t   75 (181)
T d1zh8a1          74 TL   75 (181)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.19  E-value=0.0057  Score=51.27  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .||+|||| |.+|.++|..|.+.|+  ++.++|..+
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            48999999 9999999999999998  999999865

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.18  E-value=0.18  Score=41.30  Aligned_cols=104  Identities=14%  Similarity=0.129  Sum_probs=59.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeC----CCCHHhh------
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLG----QPQLENA------  106 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~---~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~----~~d~~ea------  106 (279)
                      |++|.|+||++-+|..+|..|+.   .|.  .|++.++++... ...++....  .++..+..    ..+.++.      
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   77 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEG   77 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHH
Confidence            55899999999999999988764   566  999999987221 122332221  22332211    1111111      


Q ss_pred             ---hCCCCEEEEccCCCCCCC----Cch---hhHHHhh----HHHHHHHHHHHHHh
Q 023671          107 ---LTGMDLVIIPAGVPRKPG----MTR---DDLFNIN----AGIVRTLCEGIAKC  148 (279)
Q Consensus       107 ---l~~ADiVIitag~~~k~g----~~r---~d~~~~N----~~i~~~i~~~I~~~  148 (279)
                         ....|++|..||.....+    .+.   .+.+..|    +...+.+.+.+++.
T Consensus        78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~  133 (248)
T d1snya_          78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKA  133 (248)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence               235899999999744322    121   1234445    34566666666653

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.16  E-value=0.0075  Score=49.94  Aligned_cols=32  Identities=19%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|+|||| |.+|.++|+.|+++|.  +|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            3999999 9999999999999997  999999865

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.13  E-value=0.052  Score=44.82  Aligned_cols=118  Identities=16%  Similarity=0.108  Sum_probs=68.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhHHhhhhcccCCCeEEEEeC-CCCH---Hh--
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLG-QPQL---EN--  105 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-----~~g~~~DL~~~~~~~~v~~~~~-~~d~---~e--  105 (279)
                      .|.+...|.|+||+|-+|..++..|+++|. ..|+|+.++.     ......++...  ..++..+.. .+|.   .+  
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~   81 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELL   81 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhh
Confidence            356667899999999999999999999885 4688887653     22223344332  233443221 1221   11  


Q ss_pred             -hh---CCCCEEEEccCCCCCCC---Cchh---hHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671          106 -AL---TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       106 -al---~~ADiVIitag~~~k~g---~~r~---d~~~~N~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                       .+   -..|.||+++|......   ++..   ..+..|+.....+.+.+... +.+.++++|
T Consensus        82 ~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence             11   24788999998754321   1211   23455666666666655543 345555554

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=95.12  E-value=0.012  Score=50.91  Aligned_cols=109  Identities=16%  Similarity=0.213  Sum_probs=64.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhC-
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALT-  108 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~----~~~-----~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~-  108 (279)
                      +..||+|.|| |..|..++..|..    .|+     ..+++++|.+- ......|+.+... ...+......++.+.++ 
T Consensus        24 ~d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~-~~a~~~~~~~~l~~~i~~  101 (298)
T d1gq2a1          24 SDHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKE-HFAHEHCEMKNLEDIVKD  101 (298)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGG-GGCBSCCCCCCHHHHHHH
T ss_pred             HHcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHH-HHHHHhhhhhhhHHHhhc
Confidence            3468999999 9999998876652    343     24899999865 1111123332210 00000011124445544 


Q ss_pred             -CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCch
Q 023671          109 -GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  164 (279)
Q Consensus       109 -~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~  164 (279)
                       +.+++|-+.+.+   |-           +.+++++.|.+.+++.+|+-.|||....
T Consensus       102 vkptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~~~  144 (298)
T d1gq2a1         102 IKPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTSKA  144 (298)
T ss_dssp             HCCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             cChheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCCcC
Confidence             366777766544   21           1345667788889999999999997533

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.09  E-value=0.013  Score=43.25  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++||+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            579999999 9999999999998887  999999865

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0096  Score=41.27  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++|+|+|+ |+.|+-++.....-|+  +++.+|.+.
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            358999999 9999999998888888  999999865

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.00  E-value=0.0093  Score=47.02  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ||+|||| |..|.+.|..|.+.|+ .+|.++|..+
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            8999999 9999999999999985 3699999865

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.94  E-value=0.034  Score=43.73  Aligned_cols=69  Identities=10%  Similarity=0.249  Sum_probs=42.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHhhhhcc-cCCCeEEEEeCCCCHHhhh--CCCCEEEEcc
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENAL--TGMDLVIIPA  117 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~-L~D~~~~~g~~~DL~~~-~~~~~v~~~~~~~d~~eal--~~ADiVIita  117 (279)
                      +||+|||+ |.+|...+..+...+-+ +|+ ++|+++...  .++... ......+.+   +|+++.+  .+.|+|+++.
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~--~~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKA--KAFATANNYPESTKIH---GSYESLLEDPEIDALYVPL   74 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHH--HHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEECC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCcccc--ccchhccccccceeec---CcHHHhhhccccceeeecc
Confidence            59999998 99999998888766533 555 678875221  111111 111223333   3666655  5789999874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.94  E-value=0.051  Score=44.94  Aligned_cols=158  Identities=15%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             CCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCC---H-------Hhh
Q 023671           40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---L-------ENA  106 (279)
Q Consensus        40 ~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d---~-------~ea  106 (279)
                      +.+++.|+||+|  -+|..+|..|+..|.  +|++.|+++ ....+.++........... ...+|   .       .+.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~   83 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFR-ADVTQDEELDALFAGVKEA   83 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEE-CCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccc-cccCCHHHHHHHHHHHHHh
Confidence            456899999976  499999999999998  899999886 3222222222211111110 11111   1       223


Q ss_pred             hCCCCEEEEccCCCCCC-------CCchhh---HHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHh
Q 023671          107 LTGMDLVIIPAGVPRKP-------GMTRDD---LFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA  175 (279)
Q Consensus       107 l~~ADiVIitag~~~k~-------g~~r~d---~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~  175 (279)
                      +..-|++|.+||.....       ..+..+   .+..|+.....+++.....- ..+.++++|.-...            
T Consensus        84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~------------  151 (256)
T d1ulua_          84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------------  151 (256)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT------------
T ss_pred             cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc------------
Confidence            45789999999864211       112222   34455544445554444332 24666666532211            


Q ss_pred             CCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671          176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  214 (279)
Q Consensus       176 ~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi  214 (279)
                      .+.|..-.++.+.---..+-+.+|..++  |..|++-.+
T Consensus       152 ~~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I  188 (256)
T d1ulua_         152 KVVPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAI  188 (256)
T ss_dssp             SBCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeee
Confidence            1233333334432111235566778774  455654433

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.063  Score=44.92  Aligned_cols=116  Identities=17%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             CcEEE-EEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCH----------Hhh
Q 023671           41 GFKVA-ILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENA  106 (279)
Q Consensus        41 ~~KI~-IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~----------~ea  106 (279)
                      .++|+ |+||++-+|..+|..|+.. +.  .|++.++++  ++..+.+|............ .-+|.          .+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQL-DIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEEC-CTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEE-ecCCHHHHHHHHHHHHHh
Confidence            35775 6799999999999988864 66  999999987  33334445433211111111 11221          223


Q ss_pred             hCCCCEEEEccCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671          107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLISN  159 (279)
Q Consensus       107 l~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN  159 (279)
                      +..-|++|..||+....   ..+..   ..+..|+.-...+.+.+...- +.+.+++++.
T Consensus        79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            45899999999974322   11222   235556555555555554432 3567777764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.13  Score=42.38  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=35.0

Q ss_pred             EEE-EEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEE
Q 023671           43 KVA-ILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG   96 (279)
Q Consensus        43 KI~-IIGA~G~VG~~la~~L~~---~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~   96 (279)
                      ||+ |+||++-+|..+|..|++   +|.  .|++.|+++  ++..+.++.......++..
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~   64 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVL   64 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEE
Confidence            554 559999999999999985   566  999999986  3334445543322334443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.018  Score=42.78  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .++|++|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            3569999999 9999999999998887  999999866

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.041  Score=44.46  Aligned_cols=103  Identities=15%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCCchhHHhhhhcccCCCeEEEE---------------------eC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNTPGVTADISHMDTGAVVRGF---------------------LG   99 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~-~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~---------------------~~   99 (279)
                      +||.|||. |.-|.+++..+...++- -+.+.+|.|.     .+|.+.....++..-                     ..
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL-----QVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH-----HHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH-----HHHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            48999999 99999999888776642 3888888865     112221111111110                     00


Q ss_pred             CCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          100 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       100 ~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      .....+.+.++|+||++||.....|       ..-.+++-++++..   . --.+-++|=|-
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~ake~---g-~lvv~ivtlPF  125 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIAKEM---G-ILTVAIVTTPF  125 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---T-CEEEEEEEECC
T ss_pred             HHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHHHHc---C-CceEEEEeech
Confidence            1134567899999999998763322       12245555555443   2 12344456565

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.79  E-value=0.037  Score=43.49  Aligned_cols=69  Identities=22%  Similarity=0.174  Sum_probs=50.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ...++++|+|- |.+|..+|..+...|-  .|..+++|+..+.-. ..+.   ..+      ..++++++.+|++|.+-|
T Consensus        21 laGk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG---f~v------~~~~~a~~~aDi~vTaTG   87 (163)
T d1v8ba1          21 ISGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG---FNV------VTLDEIVDKGDFFITCTG   87 (163)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT---CEE------CCHHHHTTTCSEEEECCS
T ss_pred             ecCCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC---Ccc------CchhHccccCcEEEEcCC
Confidence            44679999999 9999999999998887  999999988322211 1111   111      146899999999999876


Q ss_pred             CC
Q 023671          119 VP  120 (279)
Q Consensus       119 ~~  120 (279)
                      ..
T Consensus        88 n~   89 (163)
T d1v8ba1          88 NV   89 (163)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.02  Score=47.41  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ||.|+|+ |-+|++++..|+..|. .+|.|+|-+.
T Consensus        32 ~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          32 RVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            8999999 9999999999999995 7999999775

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.53  E-value=0.02  Score=46.77  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..+||+|||| |..|.+.|..|.+.|+  ++.++|...
T Consensus        48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            4569999999 9999999999999998  999999865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.51  E-value=0.018  Score=42.09  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+.|++|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        20 ~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            3469999999 9999999999998887  999999865

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.026  Score=41.50  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..||+|+|+ |+.|.-++......|+  +++.+|.++
T Consensus        11 ~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            359999999 9999999999998898  999999876

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.42  E-value=0.021  Score=47.34  Aligned_cols=38  Identities=16%  Similarity=0.084  Sum_probs=32.7

Q ss_pred             CCCCcEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           38 GAAGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~--VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..+.+++.|+||+|.  +|..+|..|+..|.  +|+|.+.++
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            345679999997665  99999999999998  999999877

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.11  Score=39.46  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      +.++|.|||| |.+|..-+..|+..|-  +|.+++.
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            4579999999 9999999999999886  9999964

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.38  E-value=0.019  Score=42.73  Aligned_cols=35  Identities=14%  Similarity=-0.036  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+.|++|||| |.+|.-+|..+...|.  +|.++..++
T Consensus        19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          19 CPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            3468999999 9999999999999887  899998765

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.35  E-value=0.12  Score=36.27  Aligned_cols=70  Identities=24%  Similarity=0.285  Sum_probs=49.3

Q ss_pred             cEEEEEcCCCchHH-HHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671           42 FKVAILGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  120 (279)
Q Consensus        42 ~KI~IIGA~G~VG~-~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~  120 (279)
                      |||=+||- |-.|+ .+|..|..+|+  +|.-.|..+. .....|+...  ..+  +.+ .+ .+.++++|+||.+.+++
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~t~~L~~~G--i~i--~~g-h~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEET-ERTAYLRKLG--IPI--FVP-HS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCC-HHHHHHHHTT--CCE--ESS-CC-TTSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCC-hhHHHHHHCC--CeE--Eee-ec-ccccCCCCEEEEecCcC
Confidence            68999998 77776 67889999999  9999998762 2223355443  222  222 23 35689999999998877


Q ss_pred             C
Q 023671          121 R  121 (279)
Q Consensus       121 ~  121 (279)
                      .
T Consensus        72 ~   72 (89)
T d1j6ua1          72 D   72 (89)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.32  E-value=0.019  Score=46.49  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .||+|||| |..|.+.|..|.+.+.--+|.+||..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            39999999 999999999887654333999999876

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.26  E-value=0.013  Score=47.34  Aligned_cols=36  Identities=14%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~-----~ev~L~D~~~   77 (279)
                      +.||+|||| |.-|.+.|+.|.+.|+.     -+|.+||..+
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            569999999 99999999999887631     3899999876

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.24  E-value=0.035  Score=48.19  Aligned_cols=69  Identities=10%  Similarity=0.060  Sum_probs=47.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ...++|||+ |..+...+..+...-.+.+|.++++++  .+..+.++.+..  ..+..     +..+++++||+|+.+-
T Consensus       125 ~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~--~~~~~-----~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISASV-----QPAEEASRCDVLVTTT  195 (320)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEEE-----CCHHHHTSSSEEEECC
T ss_pred             ccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC--Ccccc-----chhhhhccccEEEEec
Confidence            358999998 999988877666544478999999876  334444444432  22322     2357899999998764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.20  E-value=0.026  Score=41.70  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++|+|||| |++|.-+|..|...|.  +|.|++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            48999999 9999999999999987  999999876

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.03  Score=41.54  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ++||+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            369999999 9999999999999987  999999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.10  E-value=0.021  Score=44.74  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|+|||| |..|.+.|..|++.|+  +|.++|.++
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            3899998 9999999999999998  999999876

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.09  E-value=0.019  Score=46.13  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVV   76 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~----~~ev~L~D~~   76 (279)
                      |||+|||| |-+|.+.|+.|+++|+    +.++.+++..
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            69999999 9999999999998764    3567777654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.05  E-value=0.037  Score=40.75  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+.||+|||+ |++|.-+|..+...|.  +|.++...+
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            4579999999 9999999999999887  999998765

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.017  Score=49.33  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=34.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD   84 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~D   84 (279)
                      |.+|.|||| |..|.++|..|++.|.  +|.++|.++ .-|.+.+
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSSSSGGGCE
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCCcccceEE
Confidence            458999999 9999999999998887  999999876 4455543

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=94.04  E-value=0.062  Score=45.03  Aligned_cols=116  Identities=24%  Similarity=0.282  Sum_probs=74.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ....||++||-   +  .....+...+.  ++.++|.++..+   |+.             ....++.+..||+||+|+ 
T Consensus       120 ~~g~kV~vIG~---~--P~v~~l~~~~~--~~~VlE~~p~~g---d~p-------------~~~~~~lLp~aD~viiTG-  175 (251)
T d2h1qa1         120 VKGKKVGVVGH---F--PHLESLLEPIC--DLSILEWSPEEG---DYP-------------LPASEFILPECDYVYITC-  175 (251)
T ss_dssp             TTTSEEEEESC---C--TTHHHHHTTTS--EEEEEESSCCTT---CEE-------------GGGHHHHGGGCSEEEEET-
T ss_pred             cCCCEEEEEec---c--hhHHHHHhcCC--cEEEEeCCCCCC---CCC-------------chHHHHhhhcCCEEEEEe-
Confidence            34569999987   1  45555666665  999999875221   111             112467899999999996 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  198 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~l  198 (279)
                                      ..++..-.+.|-+.++++..+++.-|...|.+.   ++ + .|.  +.+=|+-..|..++.+.+
T Consensus       176 ----------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~---lf-~-~Gv--~~lag~~v~d~~~~~~~i  232 (251)
T d2h1qa1         176 ----------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPV---LF-E-HGL--QELSGFMVKDNARAFRIV  232 (251)
T ss_dssp             ----------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGG---GG-G-TTC--SEEEEEEESCHHHHHHHH
T ss_pred             ----------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHH---HH-h-cCC--ceEeEEEEeCHHHHHHHH
Confidence                            244556666777778777555566788777763   22 2 233  445455568888888777


Q ss_pred             HHH
Q 023671          199 AEV  201 (279)
Q Consensus       199 a~~  201 (279)
                      ++-
T Consensus       233 ~~G  235 (251)
T d2h1qa1         233 AGA  235 (251)
T ss_dssp             TTS
T ss_pred             HcC
Confidence            543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.84  E-value=0.053  Score=42.52  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhh------CCC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TGM  110 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal------~~A  110 (279)
                      -.+..+|.|+|+ |.||...+..+...|. .+|+..|.++ ....+.++.-.    .+-... ..+..+.+      +++
T Consensus        25 ~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa~----~~i~~~-~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          25 IEMGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGAT----DILNYK-NGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTCS----EEECGG-GSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCcc----cccccc-chhHHHHHHHHhhccCc
Confidence            345668999998 9999998888887774 4799999876 22233333211    010011 12222322      469


Q ss_pred             CEEEEccCCC
Q 023671          111 DLVIIPAGVP  120 (279)
Q Consensus       111 DiVIitag~~  120 (279)
                      |+||.++|.+
T Consensus        98 D~vid~~g~~  107 (174)
T d1jqba2          98 DRVIMAGGGS  107 (174)
T ss_dssp             EEEEECSSCT
T ss_pred             ceEEEccCCH
Confidence            9999998754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.80  E-value=0.34  Score=37.68  Aligned_cols=101  Identities=16%  Similarity=0.187  Sum_probs=61.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCC-CHHh-----hhCCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQP-QLEN-----ALTGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~-d~~e-----al~~AD  111 (279)
                      .+..+|.|+|+ |.+|...+..+...| ..+|+..|.++ ....+.++....    +......+ ...+     .-.++|
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGATD----CLNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSE----EECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCCc----ccCCccchhhhhhhHhhhhcCCCc
Confidence            45569999998 999999999888888 35899999987 333344443211    11000011 1111     126899


Q ss_pred             EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCC-ceEEEecCCCCc
Q 023671          112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNS  163 (279)
Q Consensus       112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-a~viv~TNPvd~  163 (279)
                      +||.+.|.+               ..   +-..++-..|. +.++++..|.+-
T Consensus       101 ~vie~~G~~---------------~~---~~~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2         101 YSLDCAGTA---------------QT---LKAAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             EEEESSCCH---------------HH---HHHHHHTBCTTTCEEEECCCSSSE
T ss_pred             EEEEecccc---------------hH---HHHHHHHhhcCCeEEEecCCCCCc
Confidence            999998743               11   12223333464 788888777653

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.80  E-value=0.14  Score=41.90  Aligned_cols=76  Identities=16%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEeCC---CC-----------HHhh
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ---PQ-----------LENA  106 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~~---~d-----------~~ea  106 (279)
                      ..|+||++-+|..+|..|++.|.  +|++.|++.   .+..+.++...............   .+           ..+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            45899999999999999999998  999999886   12233344433211111111000   01           1123


Q ss_pred             hCCCCEEEEccCCCC
Q 023671          107 LTGMDLVIIPAGVPR  121 (279)
Q Consensus       107 l~~ADiVIitag~~~  121 (279)
                      +...|++|..||...
T Consensus        82 ~g~iDilvnnAG~~~   96 (266)
T d1mxha_          82 FGRCDVLVNNASAYY   96 (266)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCCEEEECCccCC
Confidence            457999999998643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.75  E-value=0.052  Score=39.56  Aligned_cols=35  Identities=9%  Similarity=0.100  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.++|+|||+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            4569999999 9999999999998886  999999865

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.64  E-value=0.088  Score=42.92  Aligned_cols=74  Identities=15%  Similarity=0.266  Sum_probs=47.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEE-------E--------------eC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRG-------F--------------LG   99 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-------~--------------~~   99 (279)
                      .||.|||. |.-|..++..+...++ ..+.+.+|.|.     .+|.+.....++..       .              ..
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~   89 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA-----QQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKES   89 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH-----HHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHT
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH-----HHHhcCCcchhcccccccccccccccchHHHHHHHHHH
Confidence            48999999 9999999998887764 34888888864     11222111111110       0              00


Q ss_pred             CCCHHhhhCCCCEEEEccCCCC
Q 023671          100 QPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus       100 ~~d~~eal~~ADiVIitag~~~  121 (279)
                      ...+.+.++++|.||++||...
T Consensus        90 ~~~I~~~l~~~d~vfi~AGlGG  111 (209)
T d2vapa1          90 AEEIKAAIQDSDMVFITCGLGG  111 (209)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTS
T ss_pred             HHHHHHhccCCCEEEEEEeCCC
Confidence            0134566899999999998763

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.067  Score=48.23  Aligned_cols=33  Identities=30%  Similarity=0.576  Sum_probs=30.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ||.|||+ |-+|+.++..|+..|. .+|.|+|-+.
T Consensus        39 kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          39 KVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             CEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             eEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            7999999 9999999999999995 6899999875

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.59  E-value=0.095  Score=42.37  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..+.++|+|-|. |.||+.++..|...|.  .|+..|++.
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            356679999998 9999999999999997  999999975

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.58  E-value=0.11  Score=40.10  Aligned_cols=76  Identities=18%  Similarity=0.190  Sum_probs=48.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHH-hhhCCCCEEEE
Q 023671           38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE-NALTGMDLVII  115 (279)
Q Consensus        38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~-eal~~ADiVIi  115 (279)
                      ..+..+|.|+|+ |.+|...+..+...|.  +++.+|.++ ....+.++.-   . .+.......+.. +.....|+|+.
T Consensus        25 ~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lGa---~-~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMGA---D-HYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHTC---S-EEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccCC---c-EEeeccchHHHHHhhhcccceEEE
Confidence            355679999998 9999998888877886  899999876 2233343321   1 111111112222 33467899999


Q ss_pred             ccCCC
Q 023671          116 PAGVP  120 (279)
Q Consensus       116 tag~~  120 (279)
                      +.+.+
T Consensus        98 ~~~~~  102 (168)
T d1piwa2          98 CASSL  102 (168)
T ss_dssp             CCSCS
T ss_pred             EecCC
Confidence            87654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.57  E-value=0.027  Score=47.27  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +|.|||| |-+|.++|+.|+++|. .+|+|+|.+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            7999999 9999999999998884 3799999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.43  E-value=0.03  Score=46.36  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|+|||| |.+|.++|+.|+++|+  +|+|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999998  999999754

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.36  Score=40.44  Aligned_cols=114  Identities=14%  Similarity=0.184  Sum_probs=61.6

Q ss_pred             cEEEE-EcCCCchHHHHHHHHHhCCCCcEEEEEeC---CC-chhHHhhhhc-c-cCCCeEEEEe-CCCCHHh---hh---
Q 023671           42 FKVAI-LGAAGGIGQPLAMLMKINPLVSVLHLYDV---VN-TPGVTADISH-M-DTGAVVRGFL-GQPQLEN---AL---  107 (279)
Q Consensus        42 ~KI~I-IGA~G~VG~~la~~L~~~~~~~ev~L~D~---~~-~~g~~~DL~~-~-~~~~~v~~~~-~~~d~~e---al---  107 (279)
                      +||++ +||++-+|..+|..|+..|.  .+++++.   +. ......+... . ....++..+. .-+|.++   .+   
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            47765 59999999999999999886  5555543   22 1111111111 1 0122333321 1122211   11   


Q ss_pred             --CCCCEEEEccCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCceEEEec
Q 023671          108 --TGMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLIS  158 (279)
Q Consensus       108 --~~ADiVIitag~~~k~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~T  158 (279)
                        ...|++|..+|......   .+.   ...+..|    +.+.+.+++.|.+.. .+.||++|
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~is  141 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTG  141 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEe
Confidence              46899999988653321   111   2234445    456778888887765 45566654

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.37  E-value=0.079  Score=41.16  Aligned_cols=73  Identities=11%  Similarity=0.086  Sum_probs=47.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcc-c--CCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM-D--TGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~-~--~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      +..||+++|-...|..+++..+..-|.  ++.++-...  ......+.... .  ....+..   +.|..+++++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL---LHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEE---ecCHHHHhhhccEEe
Confidence            467999999866677777777777787  999997754  21111111111 0  1234443   247789999999988


Q ss_pred             Ecc
Q 023671          115 IPA  117 (279)
Q Consensus       115 ita  117 (279)
                      .+-
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.14  E-value=0.094  Score=40.78  Aligned_cols=74  Identities=16%  Similarity=0.253  Sum_probs=46.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhh-----CCCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL-----TGMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal-----~~ADi  112 (279)
                      .+..+|.|+|+ |.+|...+..+...+. ..|+..|.++ ....+.++.-    ..+-.. ...|..+.+     .+.|+
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga----~~~i~~-~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA----THVINS-KTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC----SEEEET-TTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC----eEEEeC-CCcCHHHHHHHHcCCCCcE
Confidence            45668999998 9999999988877774 4777888876 2233333321    111111 123444433     24899


Q ss_pred             EEEccCC
Q 023671          113 VIIPAGV  119 (279)
Q Consensus       113 VIitag~  119 (279)
                      ||.+.|.
T Consensus       100 vid~~G~  106 (174)
T d1f8fa2         100 ALESTGS  106 (174)
T ss_dssp             EEECSCC
T ss_pred             EEEcCCc
Confidence            9999863

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.13  E-value=0.063  Score=42.63  Aligned_cols=75  Identities=16%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhc----cc-------CCCeEEEEeCCCCHHhhhC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISH----MD-------TGAVVRGFLGQPQLENALT  108 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~----~~-------~~~~v~~~~~~~d~~eal~  108 (279)
                      |.||+|.|- |.+|..++..+.+++-++-+.+.|..+... ...-..+    ..       ....+.   ...++.+.+.
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---v~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIP---VAGTVEDLIK   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCC---CCCCHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceecccccee---cCCchhhhhh
Confidence            459999998 999999999998877554444456544211 1110000    00       001111   1234567778


Q ss_pred             CCCEEEEccCC
Q 023671          109 GMDLVIIPAGV  119 (279)
Q Consensus       109 ~ADiVIitag~  119 (279)
                      ++|+||.|.|.
T Consensus        77 ~vDiViecTG~   87 (178)
T d1b7go1          77 TSDIVVDTTPN   87 (178)
T ss_dssp             HCSEEEECCST
T ss_pred             cCCEEEECCCC
Confidence            99999999763

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.09  E-value=0.79  Score=37.15  Aligned_cols=106  Identities=16%  Similarity=0.155  Sum_probs=61.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCCH---H-------hhh-
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---E-------NAL-  107 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d~---~-------eal-  107 (279)
                      +++.|.|+||++-+|..+|..|+..|..-.|++.++++.+.  .++.... ..++..+.. -++.   +       +.+ 
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~--~~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   78 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH--HHHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            34689999999999999999999998544788888775221  2222221 122332211 1121   1       111 


Q ss_pred             -CCCCEEEEccCCCCCC----CCchh---hHHHhh----HHHHHHHHHHHHHh
Q 023671          108 -TGMDLVIIPAGVPRKP----GMTRD---DLFNIN----AGIVRTLCEGIAKC  148 (279)
Q Consensus       108 -~~ADiVIitag~~~k~----g~~r~---d~~~~N----~~i~~~i~~~I~~~  148 (279)
                       .+-|++|..||.....    ..+..   ..+..|    +.+.+.+.+.+++.
T Consensus        79 ~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~  131 (250)
T d1yo6a1          79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNA  131 (250)
T ss_dssp             GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH
T ss_pred             CCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence             2489999999974321    12222   234445    45666777777654

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.03  E-value=0.44  Score=35.85  Aligned_cols=113  Identities=10%  Similarity=0.017  Sum_probs=67.6

Q ss_pred             cEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~---G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++|+|||||   +..|..++..|...|+  +|+.+..+.  .   ++.-      ...+   .++.+.-...|+|+++..
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~--~---~i~G------~~~~---~sl~dlp~~iD~v~i~vp   83 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKY--E---EVLG------RKCY---PSVLDIPDKIEVVDLFVK   83 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--S---EETT------EECB---SSGGGCSSCCSEEEECSC
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCcc--c---ccCC------Cccc---ccccccCccceEEEEEeC
Confidence            489999997   5789999999999998  888886542  1   1111      1111   234333346899988752


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cc-hhHHHH
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM-LDVVRA  194 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~-lds~R~  194 (279)
                                      .+.+.++++++.+.+++++++.   |-..-. -+.+.+.+ .|+   +++|= |. .+..||
T Consensus        84 ----------------~~~~~~~~~e~~~~g~k~v~~~---~G~~~e-e~~~~a~~-~gi---~vig~~C~~v~~~rl  137 (139)
T d2d59a1          84 ----------------PKLTMEYVEQAIKKGAKVVWFQ---YNTYNR-EASKKADE-AGL---IIVANRCMMREHERL  137 (139)
T ss_dssp             ----------------HHHHHHHHHHHHHHTCSEEEEC---TTCCCH-HHHHHHHH-TTC---EEEESCCHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHhCCCEEEEe---ccccCH-HHHHHHHH-CCC---EEEcCCcChhhhhhh
Confidence                            3456677777777777765543   332222 22244443 344   67886 74 455554

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.02  E-value=0.046  Score=42.50  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCchHHHHH-HHHHhCCCCcEEEEE-eCCC
Q 023671           40 AGFKVAILGAAGGIGQPLA-MLMKINPLVSVLHLY-DVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la-~~L~~~~~~~ev~L~-D~~~   77 (279)
                      +++||+|||+ |.+|..+. ..+...+.. |++++ |++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            4579999996 99998755 444444544 66554 7665

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.94  E-value=0.051  Score=40.82  Aligned_cols=28  Identities=25%  Similarity=0.380  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLH   71 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~   71 (279)
                      |||+|.|++|.+|+.++..+...++  +++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~--~l~   28 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH--ELV   28 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC--eEE
Confidence            6999999999999999988877776  544

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.93  E-value=0.044  Score=43.34  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=45.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHh----hhhcccCCCeEE-----EEeCCCCHHhhhCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTA----DISHMDTGAVVR-----GFLGQPQLENALTG  109 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g--~~~----DL~~~~~~~~v~-----~~~~~~d~~eal~~  109 (279)
                      .+||+|.|- |.+|..++..+..++-+.-+.+.|..+...  ...    ++.+... ..+.     .+....++.+.+.+
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   79 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASE-EFIPRFEKEGFEVAGTLNDLLEK   79 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSG-GGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccc-cceeeecccCccccchhhhhhcc
Confidence            469999998 999999998888776554555666654211  111    1111100 0000     01112345666789


Q ss_pred             CCEEEEccCC
Q 023671          110 MDLVIIPAGV  119 (279)
Q Consensus       110 ADiVIitag~  119 (279)
                      +|+||.|.|.
T Consensus        80 vDvViEcTG~   89 (172)
T d2czca2          80 VDIIVDATPG   89 (172)
T ss_dssp             CSEEEECCST
T ss_pred             CCEEEECCCC
Confidence            9999999864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.072  Score=43.64  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |.+.+.|+||++-+|..++..|+..|.  +|++.|+++
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPN   39 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            455678999999999999999999998  999999987

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.91  E-value=0.061  Score=44.00  Aligned_cols=72  Identities=22%  Similarity=0.284  Sum_probs=44.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  121 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~  121 (279)
                      -|.|+||++-+|..+|..|+..|.  +|++.|+++.+. ..|+.........  .  .....+.....|+++..||...
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~~~-~~d~~~~~~~~~~--~--~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEV-IADLSTAEGRKQA--I--ADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSE-ECCTTSHHHHHHH--H--HHHHTTCTTCCSEEEECCCCCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChHHH-HHHhcCHHHHHHH--H--HHHHHHhCCCCcEEEEcCCCCC
Confidence            457789999999999999999998  999999876211 1122211100000  0  0001122356899999998653

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.77  E-value=0.22  Score=39.35  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             CCcEEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHHhhhhccc--CCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           40 AGFKVAILG-AAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIG-A~G~VG~~la~~L~~~~~~~ev~L~D~~~--~-~g~~~DL~~~~--~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      +..||+++| +...|..+++..+..-|.  ++.++-...  . .....++....  ....+..   ++|++++++++|+|
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eai~~aDvV   78 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL---TEDPKEAVKGVDFV   78 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhccCCeEEE---EeChhhccccccEE
Confidence            356999999 423688888888888887  999997644  1 11111111111  1334444   35788999999998


Q ss_pred             EEcc
Q 023671          114 IIPA  117 (279)
Q Consensus       114 Iita  117 (279)
                      ....
T Consensus        79 yt~~   82 (185)
T d1dxha2          79 HTDV   82 (185)
T ss_dssp             EECC
T ss_pred             Eeeh
Confidence            8753

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.67  E-value=0.22  Score=40.08  Aligned_cols=102  Identities=21%  Similarity=0.307  Sum_probs=60.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEE-------EE--------------eCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVR-------GF--------------LGQ  100 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~-------~~--------------~~~  100 (279)
                      +|-|||- |-.|.+++..+...++ --+++.+|.|.     .+|.......++.       ..              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA-----QALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH-----HHHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH-----HHHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6778998 9999999999988875 23788888764     1111111101111       00              001


Q ss_pred             CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      +...+.++++|+||++||.....|       ..-+|++-++++...    --.+-++|-|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~g----~l~v~ivt~PF  126 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKLG----ALTVGVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHHT----CEEEEEEEECC
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHcC----CcEEEEEecCh
Confidence            234667899999999998764332       123566666666542    12344456664

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.46  E-value=0.052  Score=43.95  Aligned_cols=32  Identities=25%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|.|||| |..|...|..|.+.|+  +|+|+|.++
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999998  999999876

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.053  Score=45.15  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=28.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |+|||| |..|.+.|..|.+.|+  +|.++|..+
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            789999 9999999999999998  999999765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.35  E-value=0.39  Score=37.97  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=47.6

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhh------CC
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TG  109 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal------~~  109 (279)
                      +..+..+|.|+|+ |.+|...+..+...+ +.+|+.+|.++ ....+.++.     ..........++.+.+      .+
T Consensus        22 ~v~~G~tVlV~Ga-G~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~G-----a~~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          22 GVGPGSTVYVAGA-GPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             TCCTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECc-CHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhcc-----ccEEEeCCCcCHHHHHHHHhCCCC
Confidence            4456679999998 999988877777666 35899999876 222222221     1111111122333322      47


Q ss_pred             CCEEEEccCCC
Q 023671          110 MDLVIIPAGVP  120 (279)
Q Consensus       110 ADiVIitag~~  120 (279)
                      +|++|.+.|.+
T Consensus        95 ~D~vid~vG~~  105 (195)
T d1kola2          95 VDCAVDAVGFE  105 (195)
T ss_dssp             EEEEEECCCTT
T ss_pred             cEEEEECcccc
Confidence            99999998854

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.33  E-value=0.071  Score=43.42  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=41.2

Q ss_pred             CCcEEEEEcCCCchHH-HHHHHHHhCCCCcEEE-EEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEE
Q 023671           40 AGFKVAILGAAGGIGQ-PLAMLMKINPLVSVLH-LYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLV  113 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~-~la~~L~~~~~~~ev~-L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiV  113 (279)
                      ++.||+|||+ |.+|. +++..+...+.+ +|+ ++|+++  ++..+.++. .. ...+..+   +|+++.++  +.|+|
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~~---~d~~ell~~~~iD~V  104 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-VD-PRKIYDY---SNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-CC-GGGEECS---SSGGGGGGCTTCCEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-cc-ccccccc---Cchhhhcccccceee
Confidence            3469999998 99997 455555444433 555 889876  222222221 11 1223322   46666664  68899


Q ss_pred             EEcc
Q 023671          114 IIPA  117 (279)
Q Consensus       114 Iita  117 (279)
                      +++.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            9875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.02  E-value=0.062  Score=39.65  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+.+++|||| |.+|.-+|..+...|.  +|.++...+
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            4569999999 9999999999998887  999998866

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.01  E-value=0.23  Score=40.48  Aligned_cols=79  Identities=11%  Similarity=0.168  Sum_probs=41.9

Q ss_pred             hhhhccCCCCCCcEEEEEcCCCch----HHHHHHHHHhCCCCcEEE-EEeCCCc--hhHHhhhhcccCCCeEEEEeCCCC
Q 023671           30 QAKCRAKGGAAGFKVAILGAAGGI----GQPLAMLMKINPLVSVLH-LYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ  102 (279)
Q Consensus        30 ~~~~~~~~~~~~~KI~IIGA~G~V----G~~la~~L~~~~~~~ev~-L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d  102 (279)
                      +.+-+++ -.+++||+|||+ |..    +......+.....--+|+ ++|++..  +..+..+.    ......+   ++
T Consensus         6 ~~~~~~~-~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~----~~~~~~~---~~   76 (237)
T d2nvwa1           6 SKLSTVP-SSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ----LKHATGF---DS   76 (237)
T ss_dssp             SGGGSSG-GGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT----CTTCEEE---SC
T ss_pred             cccccCC-CCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc----cccceee---cc
Confidence            3444444 356789999998 764    343444554432222665 7888752  21122111    1222333   35


Q ss_pred             HHhhhC--CCCEEEEcc
Q 023671          103 LENALT--GMDLVIIPA  117 (279)
Q Consensus       103 ~~eal~--~ADiVIita  117 (279)
                      +++.++  +.|+|+++.
T Consensus        77 ~~~l~~~~~iD~V~i~t   93 (237)
T d2nvwa1          77 LESFAQYKDIDMIVVSV   93 (237)
T ss_dssp             HHHHHHCTTCSEEEECS
T ss_pred             hhhcccccccceeeccC
Confidence            666664  677888874

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.82  E-value=0.14  Score=41.31  Aligned_cols=102  Identities=19%  Similarity=0.303  Sum_probs=58.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCCchhHHhhhhcccCCCeEEE---------------------EeCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNTPGVTADISHMDTGAVVRG---------------------FLGQ  100 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~-~ev~L~D~~~~~g~~~DL~~~~~~~~v~~---------------------~~~~  100 (279)
                      +|.|||- |-.|.+++..+...++. -+++.+|.|.     .+|.......++..                     ....
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDA-----QALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBT-----GGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcH-----HHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            5789999 99999999999887742 3888888875     11111110001100                     0001


Q ss_pred             CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671          101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  161 (279)
Q Consensus       101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv  161 (279)
                      ....+.++++|+||++||.....|       ..-+|++.++++..   . --.+-++|=|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake~---g-~lvvaivtlPF  126 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKEM---G-ILTVAVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---T-CEEEEEEEECC
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHHc---C-CCEEEEEecch
Confidence            124567899999999998764332       12245555555432   2 22344456564

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.81  E-value=0.085  Score=39.16  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..+.+++|||+ |.+|.-+|..+...|.  ++.+++..+
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            34579999999 9999999999998887  999998765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.65  E-value=0.41  Score=36.15  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=57.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCH----HhhhCCCCEE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLV  113 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~----~eal~~ADiV  113 (279)
                      .+..+|.|.|+ |.+|...+..+...+.  +++..|.++ ....+.++.-    ..+... ...|.    .+...+.|.+
T Consensus        26 ~~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~Ga----~~~~~~-~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          26 KPGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKELGA----DLVVNP-LKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             CTTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTC----SEEECT-TTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhcCc----ceeccc-ccchhhhhcccccCCCceE
Confidence            45568999998 9999998888888887  899999866 2222222211    111111 11232    2335677888


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      |++++.+               ..+..   .++...|.+.++++..|.+
T Consensus        98 v~~~~~~---------------~~~~~---a~~~l~~~G~i~~~g~~~~  128 (168)
T d1rjwa2          98 VVTAVSK---------------PAFQS---AYNSIRRGGACVLVGLPPE  128 (168)
T ss_dssp             EESSCCH---------------HHHHH---HHHHEEEEEEEEECCCCSS
T ss_pred             EeecCCH---------------HHHHH---HHHHhccCCceEecccccC
Confidence            8876422               11222   2222348888888765544

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.64  E-value=0.081  Score=42.68  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +++.|+||++-+|..+|..|++.|.  +|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3677889999999999999999998  999999876

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.56  E-value=0.31  Score=37.09  Aligned_cols=71  Identities=13%  Similarity=0.068  Sum_probs=42.7

Q ss_pred             CCcEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671           40 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  116 (279)
Q Consensus        40 ~~~KI~IIGA~G~--VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit  116 (279)
                      +..||+++|=..+  |..+++..+..-|.  +++++-..+......++... ....+..+   +|+++++++||+|..+
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~~---~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDE-LNYPVKEV---ENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTT-CCSCEEEE---SCGGGTGGGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhccc-CCCeEEEE---eCHHHHhhcCCeEEEe
Confidence            3569999997223  88888888887776  65555443311000111111 12345543   4678999999988776

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.45  E-value=0.082  Score=45.04  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..|+|||| |..|..+|..|.+.|+  +++++|..+
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            47999999 9999999999999998  899999753

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.053  Score=42.42  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..+|+|||+ |..|...|..+.+.++  +++++|...
T Consensus         5 ~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGS-GPAGYTAAVYAARANL--QPVLITGME   38 (190)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEeec
Confidence            458999999 9999999999999998  889998643

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.43  E-value=0.73  Score=37.66  Aligned_cols=32  Identities=19%  Similarity=0.195  Sum_probs=27.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..|+||++-+|..+|..|+..|.  +|++.|.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            34669989999999999999998  999988765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.40  E-value=0.41  Score=36.78  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=45.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh------CCCCE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDL  112 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal------~~ADi  112 (279)
                      .+..+|.|+||+|.||...+..+...|.  +++..+.++.  ....+.... ...+... ...|+.+.+      ++.|+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~~~~l~~~G-a~~vi~~-~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--KREMLSRLG-VEYVGDS-RSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--HHHHHHTTC-CSEEEET-TCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccc--cceeeecccc--ccccccccc-ccccccC-CccCHHHHHHHHhCCCCEEE
Confidence            3456899999999999999988888886  7777765431  111122221 1122211 223554544      57999


Q ss_pred             EEEccC
Q 023671          113 VIIPAG  118 (279)
Q Consensus       113 VIitag  118 (279)
                      |+-+.|
T Consensus        98 v~d~~g  103 (183)
T d1pqwa_          98 VLNSLA  103 (183)
T ss_dssp             EEECCC
T ss_pred             EEeccc
Confidence            999875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.39  E-value=0.22  Score=38.54  Aligned_cols=74  Identities=20%  Similarity=0.262  Sum_probs=45.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      .+..+|.|.||+|.+|......+...|.  +++..+.++ ....+.++.   . ..+..+....+....-+++|+|+-+.
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lG---a-~~~i~~~~~~~~~~~~~g~D~v~d~~   99 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALG---A-EEAATYAEVPERAKAWGGLDLVLEVR   99 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTT---C-SEEEEGGGHHHHHHHTTSEEEEEECS
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccc--ccccccccccccccccccc---c-ceeeehhhhhhhhhcccccccccccc
Confidence            4566899999889999999998888887  788887654 222222221   1 11211111001122347899999876


Q ss_pred             C
Q 023671          118 G  118 (279)
Q Consensus       118 g  118 (279)
                      |
T Consensus       100 G  100 (171)
T d1iz0a2         100 G  100 (171)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=91.19  E-value=0.063  Score=44.71  Aligned_cols=48  Identities=19%  Similarity=0.173  Sum_probs=36.6

Q ss_pred             hhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC
Q 023671           26 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   77 (279)
Q Consensus        26 ~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~   77 (279)
                      -++||.+..+..... .-|+|||| |..|...|..|+++ |+  ++.++|..+
T Consensus        19 ~~~~~~~~~~~~~~e-~DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          19 EMTRRYMTDMITYAE-TDVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             HHHHHHHHHHHHHTE-EEEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             HHHHhhhcccccccC-CCEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            356776666552111 24999999 99999999999874 88  999999865

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.09  E-value=0.13  Score=39.52  Aligned_cols=73  Identities=19%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             CCcEEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhH-Hhhhhccc--CCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           40 AGFKVAILG-AAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV-TADISHMD--TGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        40 ~~~KI~IIG-A~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~-~~DL~~~~--~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      +..||+++| +...|-.+++..+..-|.  ++.+.-...  .... ........  ....+..   ++|++++++++|+|
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~---~~d~~~ai~~aDvi   76 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKETDGSVSF---TSNLEEALAGADVV   76 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhcCCceEE---EecHHHhhhhhhhe
Confidence            456999999 435688888888888887  999887644  1111 11111110  1234444   35788999999999


Q ss_pred             EEcc
Q 023671          114 IIPA  117 (279)
Q Consensus       114 Iita  117 (279)
                      ..+.
T Consensus        77 yt~~   80 (161)
T d1vlva2          77 YTDV   80 (161)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            9864

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.01  E-value=0.097  Score=39.65  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=26.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ||+|||| |++|..+|..|.+ +.  +|.+++..+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            8999999 9999999988854 44  899998653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.73  E-value=0.09  Score=44.22  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=27.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHh-----CCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKI-----NPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~-----~~~~~ev~L~D~~~   77 (279)
                      -|.|||| |.+|.++|..|++     .|+  ++.++|..+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            5899999 9999999999964     678  899999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.67  E-value=0.52  Score=36.37  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCC-HHhhh-----CCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d-~~eal-----~~AD  111 (279)
                      .+..+|.|+|+ |.+|...+..+...|. .+|+..|.++ ....+.++.-.    .+......++ ..+..     .+.|
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa~----~~i~~~~~d~~~~~~~~~~~~~G~d   99 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGAT----ECLNPKDYDKPIYEVICEKTNGGVD   99 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCCc----EEEcCCCchhHHHHHHHHhcCCCCc
Confidence            45568999998 9999999988887773 5899999987 22333333211    1110111111 12221     4899


Q ss_pred             EEEEccCC
Q 023671          112 LVIIPAGV  119 (279)
Q Consensus       112 iVIitag~  119 (279)
                      +||.+.|.
T Consensus       100 ~vid~~g~  107 (174)
T d1p0fa2         100 YAVECAGR  107 (174)
T ss_dssp             EEEECSCC
T ss_pred             EEEEcCCC
Confidence            99999863

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.46  E-value=0.11  Score=42.44  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..|.|||| |..|...|..|++.|+  +|.|+|.++
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36999999 9999999999999998  999999876

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.35  E-value=0.088  Score=41.34  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..+|+|||| |..|...|..+.+.++  +++++|...
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCSS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEeec
Confidence            358999999 9999999999999998  888998543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.21  E-value=0.15  Score=36.78  Aligned_cols=36  Identities=14%  Similarity=0.047  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~   77 (279)
                      +.||+|||| |++|.-+|..+... ....+|.+++..+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            469999999 99999999766532 2334999999765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.16  Score=37.98  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=27.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~----~~~~~ev~L~D~~~   77 (279)
                      ++|+|||| |++|.-+|..|..    .+.  +|.+++..+
T Consensus        38 k~i~IvGg-G~~G~E~A~~l~~~~~~~g~--~Vt~i~~~~   74 (137)
T d1m6ia2          38 KSITIIGG-GFLGSELACALGRKARALGT--EVIQLFPEK   74 (137)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHHhcCC--EEEEecccc
Confidence            49999999 9999999887753    355  999999865

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=90.09  E-value=0.45  Score=36.28  Aligned_cols=63  Identities=13%  Similarity=0.177  Sum_probs=43.0

Q ss_pred             CcEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA--~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ..||+++|=  .+.|..+++..+..-|.  ++.+......       ...  ...+..+   .+++++++++|+|..+-
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~--~~~~~~~---~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDE--ENTFGTY---VSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hcc--ccceeEE---EechhccccCceeeeeE
Confidence            469999997  46699999988888786  7887765431       100  1122322   35679999999988763

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.05  E-value=0.67  Score=35.84  Aligned_cols=75  Identities=13%  Similarity=0.159  Sum_probs=46.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCC-HH---h--hhCCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ-LE---N--ALTGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d-~~---e--al~~AD  111 (279)
                      .+...|+|+|+ |-+|...+..+...|. .+|+.+|.++ ....+.++.-..   .+. ....++ .+   +  .-.++|
T Consensus        28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~---~in-~~~~~~~~~~~~~~~~g~G~d  101 (176)
T d1d1ta2          28 KPGSTCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATE---CIS-PKDSTKPISEVLSEMTGNNVG  101 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSE---EEC-GGGCSSCHHHHHHHHHTSCCC
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcE---EEC-ccccchHHHHHHHHhccccce
Confidence            34558999998 9999999998888874 5999999987 223333333211   010 011111 11   1  126899


Q ss_pred             EEEEccCC
Q 023671          112 LVIIPAGV  119 (279)
Q Consensus       112 iVIitag~  119 (279)
                      +||.+.|.
T Consensus       102 ~vi~~~g~  109 (176)
T d1d1ta2         102 YTFEVIGH  109 (176)
T ss_dssp             EEEECSCC
T ss_pred             EEEEeCCc
Confidence            99999763

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=0.13  Score=40.59  Aligned_cols=32  Identities=13%  Similarity=0.065  Sum_probs=29.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|+|||| |..|.+.|..+.+.|+  +|.++|.++
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4889999 9999999999999998  999999765

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=90.01  E-value=0.39  Score=37.51  Aligned_cols=75  Identities=17%  Similarity=0.093  Sum_probs=43.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH----hhhhcccC---------CCeEEEEeCCCCHHhhh
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHMDT---------GAVVRGFLGQPQLENAL  107 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~----~DL~~~~~---------~~~v~~~~~~~d~~eal  107 (279)
                      |+||+|-|- |.+|..++..+..++-..=+.+-|+.+.....    .|..+...         ...+..   ..+..+.+
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v---~g~~~~~~   76 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEV---AGTVDDML   76 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCC---CEEHHHHH
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCccc---CCChhHhh
Confidence            569999998 99999999888777744334455554421111    11111000         000110   12345667


Q ss_pred             CCCCEEEEccCC
Q 023671          108 TGMDLVIIPAGV  119 (279)
Q Consensus       108 ~~ADiVIitag~  119 (279)
                      .++|+||.|-|.
T Consensus        77 ~~vDvViEcTG~   88 (171)
T d1cf2o1          77 DEADIVIDCTPE   88 (171)
T ss_dssp             HTCSEEEECCST
T ss_pred             cCCCEEEEccCC
Confidence            899999999764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.86  E-value=0.25  Score=37.61  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      ..+|+|||+ |++|..+|..|...+.-..|.+++..
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence            458999999 99999999999998874456666543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.63  E-value=0.15  Score=40.34  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|+|||+ |..|.+.|..+++.|+  +|+++|..+
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4899999 9999999999999998  999999765

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.22  E-value=0.81  Score=33.18  Aligned_cols=92  Identities=15%  Similarity=0.105  Sum_probs=53.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HH-hhhCCCCEEEEccC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LE-NALTGMDLVIIPAG  118 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~-eal~~ADiVIitag  118 (279)
                      .|.|+|. |.+|..++..|.  +.  +++++|.++....  .+.... ..-+.+  ..++   +. ..+.+|+.+|++..
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~--~~~~~~-~~~i~G--d~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRK--KVLRSG-ANFVHG--DPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHH--HHHHTT-CEEEES--CTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHH--HHHhcC-cccccc--ccCCHHHHHHhhhhcCcEEEEecc
Confidence            5889998 999999998873  33  6788898773222  222211 111111  1222   11 22678999999752


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  159 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN  159 (279)
                      .         |  ..|..    ++..+++.+|+..++.-++
T Consensus        72 ~---------d--~~n~~----~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          72 S---------D--SETIH----CILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             S---------H--HHHHH----HHHHHHHHCSSSCEEEECS
T ss_pred             c---------h--hhhHH----HHHHHHHHCCCceEEEEEc
Confidence            1         1  23433    3455677889976655554

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.09  E-value=1.8  Score=31.10  Aligned_cols=81  Identities=9%  Similarity=0.086  Sum_probs=50.1

Q ss_pred             cEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671           42 FKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  118 (279)
Q Consensus        42 ~KI~IIGA~---G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag  118 (279)
                      ++|+|||||   +..|..+...|+..|+  +|+.+..+.  ..   +.      .+..+   .++.+.=...|+++++..
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~--~~---i~------G~~~y---~sl~~lp~~~D~vvi~vp   65 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNY--DE---IE------GLKCY---RSVRELPKDVDVIVFVVP   65 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--SE---ET------TEECB---SSGGGSCTTCCEEEECSC
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEcccc--cc---cc------Ccccc---ccchhccccceEEEEEeC
Confidence            479999986   5678888889999998  888885432  11   11      11111   233332245699988742


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceE
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  154 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~v  154 (279)
                                      .+.+.++++++.+.++++++
T Consensus        66 ----------------~~~~~~~l~~~~~~g~k~v~   85 (116)
T d1y81a1          66 ----------------PKVGLQVAKEAVEAGFKKLW   85 (116)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCEEE
T ss_pred             ----------------HHHHHHHHHHHHhcCCceEE
Confidence                            34455666666677776544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=88.98  E-value=0.58  Score=35.76  Aligned_cols=72  Identities=17%  Similarity=0.077  Sum_probs=46.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhh------CCCCE
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDL  112 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal------~~ADi  112 (279)
                      +..+|.|+||+|.+|......+...|.  +++..|.++. ...+.++.   . ..+-.+ ...|+.+.+      .+.|+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a-~~vi~~-~~~d~~~~v~~~t~g~g~d~  100 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---A-WQVINY-REEDLVERLKEITGGKKVRV  100 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---C-SEEEET-TTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---C-eEEEEC-CCCCHHHHHHHHhCCCCeEE
Confidence            345899999988899999998888887  8999988762 22222222   1 112111 123554443      46798


Q ss_pred             EEEccC
Q 023671          113 VIIPAG  118 (279)
Q Consensus       113 VIitag  118 (279)
                      |+-++|
T Consensus       101 v~d~~g  106 (179)
T d1qora2         101 VYDSVG  106 (179)
T ss_dssp             EEECSC
T ss_pred             EEeCcc
Confidence            888874

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.85  E-value=1.7  Score=31.93  Aligned_cols=87  Identities=14%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             CCCcEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           39 AAGFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        39 ~~~~KI~IIGA~---G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      -.++.|+|||||   |..|..+...|...+ -.+|+.+.....     ++..      ++.+   .++.+.=...|++++
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~-----~i~G------~~~y---~sl~dlp~~vDlvvi   70 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE-----EVQG------VKAY---KSVKDIPDEIDLAII   70 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS-----EETT------EECB---SSTTSCSSCCSEEEE
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcc-----ccCC------eEee---cchhhcCCCCceEEE
Confidence            356799999998   778887777776544 458888865421     1111      1111   123222246899999


Q ss_pred             ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671          116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  156 (279)
Q Consensus       116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv  156 (279)
                      +..                .+.+.++++++.+..-.+.++.
T Consensus        71 ~vp----------------~~~~~~~~~~~~~~g~~~~vi~   95 (129)
T d2csua1          71 VVP----------------KRFVKDTLIQCGEKGVKGVVII   95 (129)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHTCCEEEEC
T ss_pred             ecC----------------hHHhHHHHHHHHHcCCCEEEEe
Confidence            752                3456667777777776665544

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=88.73  E-value=0.18  Score=38.78  Aligned_cols=37  Identities=24%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |++|+|+|+||++|.+....+.+.+---+|+.+--+.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            5799999999999999888777654222666665443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.57  E-value=0.16  Score=40.08  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      =|.|||+ |..|.+.|..+.+.|.  +++++|..+
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4889999 9999999999999998  999999765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.36  E-value=0.24  Score=35.81  Aligned_cols=36  Identities=17%  Similarity=0.069  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~   77 (279)
                      +.+|+|||| |++|.-+|..+...+ ...+|.+++..+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            469999999 999999997665432 223899999765

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.06  E-value=0.2  Score=44.00  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHh------CCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKI------NPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~------~~~~~ev~L~D~~~   77 (279)
                      =|.|||| |..|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            5999999 9999999999987      788  999999865

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=1.1  Score=34.76  Aligned_cols=71  Identities=11%  Similarity=0.214  Sum_probs=45.4

Q ss_pred             CcEEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCC--ch-h---HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671           41 GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-G---VTADISHMDTGAVVRGFLGQPQLENALTGMDLV  113 (279)
Q Consensus        41 ~~KI~IIGA-~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~-g---~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV  113 (279)
                      ..||+++|= ...|..+++..+..-|.  +|.++-..+  .. .   .+.+.... ....+..   +.|.+++++++|+|
T Consensus         5 ~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aDvv   78 (183)
T d1duvg2           5 EMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGADFI   78 (183)
T ss_dssp             GCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCCEE
Confidence            468999994 12577788777777787  999997654  11 1   11112211 1234443   35788999999998


Q ss_pred             EEcc
Q 023671          114 IIPA  117 (279)
Q Consensus       114 Iita  117 (279)
                      ..+.
T Consensus        79 yt~~   82 (183)
T d1duvg2          79 YTDV   82 (183)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=87.99  E-value=1.1  Score=34.36  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+...|.|.||+|.||...+......|.  +++..+.++
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~   64 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSD   64 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCH
Confidence            4567899999999999999999999997  888887654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.92  E-value=0.12  Score=38.36  Aligned_cols=86  Identities=13%  Similarity=0.161  Sum_probs=50.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhh-CCCCEEEEccC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAG  118 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal-~~ADiVIitag  118 (279)
                      +.+|+|+|| |..|..++..+....-..=+.++|-++ ..|...        ..+.++. .+++++.. +..++++.+. 
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I--------~Gi~V~~-~~~l~~~~~~~i~iai~~i-   71 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPV--------RGGVIEH-VDLLPQRVPGRIEIALLTV-   71 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE--------TTEEEEE-GGGHHHHSTTTCCEEEECS-
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE--------CCEEEec-HHHHHHHHhhcccEEEEeC-
Confidence            348999999 999999987664444345778889876 222211        1122221 23444433 3455555553 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc
Q 023671          119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA  152 (279)
Q Consensus       119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a  152 (279)
                       |              ....+++++.+.+.+-++
T Consensus        72 -~--------------~~~~~~I~d~l~~~gIk~   90 (126)
T d2dt5a2          72 -P--------------REAAQKAADLLVAAGIKG   90 (126)
T ss_dssp             -C--------------HHHHHHHHHHHHHHTCCE
T ss_pred             -C--------------HHHHHHHHHHHHHcCCCE
Confidence             2              123466777787777554

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.91  E-value=0.22  Score=38.05  Aligned_cols=31  Identities=23%  Similarity=0.259  Sum_probs=27.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      -|.|||| |..|...|..+.+.|+  ++.++|.+
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGER   33 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEEe
Confidence            4889999 9999999999999998  88999853

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.84  E-value=0.33  Score=36.50  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=24.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      ||+|+|++|.+|+.++..+...+-..=+..+|..
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            8999999999999998887765533233345543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.77  E-value=0.22  Score=41.51  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|.|||+ |..|.+.|..|++.|+  +|+|+|...
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            5899999 9999999999999998  999999765

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=87.70  E-value=0.23  Score=38.24  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      +.||+|||+ |++|..+|..|.+.+.-.+|+++..
T Consensus         3 ~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           3 KAPVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            347999999 9999999999988776446666543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.52  E-value=0.96  Score=34.25  Aligned_cols=74  Identities=19%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeC-CCCHHhhh-----CCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQLENAL-----TGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~-~~d~~eal-----~~AD  111 (279)
                      .+..+|.|.|+ |-+|...+..+...+. ..|+..|.++ ....+.++....    +-.+.. .++..+.+     .++|
T Consensus        27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~~----~i~~~~~~~~~~~~~~~~~~~g~D  100 (176)
T d2fzwa2          27 EPGSVCAVFGL-GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGATE----CINPQDFSKPIQEVLIEMTDGGVD  100 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCSE----EECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCEEEEecc-hhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCcE----EEeCCchhhHHHHHHHHHcCCCCc
Confidence            44568999998 8899988887777663 4788888876 223334333211    110111 11222222     5899


Q ss_pred             EEEEccC
Q 023671          112 LVIIPAG  118 (279)
Q Consensus       112 iVIitag  118 (279)
                      +||.+.|
T Consensus       101 ~vid~~G  107 (176)
T d2fzwa2         101 YSFECIG  107 (176)
T ss_dssp             EEEECSC
T ss_pred             EeeecCC
Confidence            9999986

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=87.43  E-value=0.31  Score=37.46  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |+||+|.|+||++|.+....+.+.+---+|+.+--+.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~   37 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK   37 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            4589999999999999888777764222666654443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.39  E-value=0.46  Score=36.02  Aligned_cols=98  Identities=18%  Similarity=0.224  Sum_probs=58.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHh----hhCCCCEE
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLEN----ALTGMDLV  113 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~e----al~~ADiV  113 (279)
                      .+..+|.|+|+ |.+|...+..+...|.  +|+.+|.++ ....+.++..    ..+-.. ..++..+    ...+.|.+
T Consensus        26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~Ga----~~~i~~-~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLGA----SLTVNA-RQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC----SEEEET-TTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccCc----cccccc-cchhHHHHHHHhhcCCccc
Confidence            45569999998 9999999998888885  899999876 2223333321    111111 1223333    23567777


Q ss_pred             EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671          114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  162 (279)
Q Consensus       114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd  162 (279)
                      |++++.+               +.+..   .++-..|.+.++++..|-+
T Consensus        98 i~~~~~~---------------~~~~~---~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2          98 LVTAVSN---------------SAFGQ---AIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             EECCSCH---------------HHHHH---HHTTEEEEEEEEECCCCSS
T ss_pred             ccccccc---------------hHHHH---HHHHhcCCcEEEEEEecCC
Confidence            7776422               11222   3333348888888866543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=87.36  E-value=1.3  Score=33.68  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +..+|.|+|+ |-+|...+..+...+. .+|+..|.++
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCG
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcH
Confidence            4468999999 8899998888877763 4999999987

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.32  E-value=0.27  Score=39.25  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|+|||+ |..|.+.|..+.+.|+  +++++|..+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            4889999 9999999999999998  999999765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.28  E-value=0.24  Score=35.31  Aligned_cols=35  Identities=11%  Similarity=0.153  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+||+|||+ |.-|..++..|..  .+.++++.-...
T Consensus        31 ~gK~VlVVG~-g~Sa~dia~~l~~--~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGG-ASSANDLVRHLTP--VAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECS-SHHHHHHHHHHTT--TSCSSEEEECTT
T ss_pred             CCCeEEEECC-CCCHHHHHHHHHH--hcCEEEEEEecC
Confidence            4569999998 9999999988864  344656665544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.51  E-value=0.93  Score=38.75  Aligned_cols=105  Identities=13%  Similarity=0.112  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhh----hhcccCCCeEEEEeCCCCHHhhh----CCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD----ISHMDTGAVVRGFLGQPQLENAL----TGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~D----L~~~~~~~~v~~~~~~~d~~eal----~~A  110 (279)
                      .++||.|||+ |.  ..++..++....+.+|.++|+++ ....+..    .......++++.+.  .|-.+.+    +.-
T Consensus       106 ~pk~VLIiGg-G~--G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i--~Da~~~l~~~~~~y  180 (312)
T d2b2ca1         106 DPKRVLIIGG-GD--GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC--GDGFEFLKNHKNEF  180 (312)
T ss_dssp             SCCEEEEESC-TT--SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC--SCHHHHHHHCTTCE
T ss_pred             CCCeEEEeCC-Cc--hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEE--chHHHHHHhCCCCC
Confidence            4569999998 52  33444555555567999999987 2111111    11111246777653  2433333    347


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEec
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  158 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~T  158 (279)
                      |+||+-.-.|.  +.. .      .-..++..+.+++. .|+++++.=+
T Consensus       181 DvII~D~~dp~--~~~-~------~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         181 DVIITDSSDPV--GPA-E------SLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEEEECCC----------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEEcCCCCC--Ccc-h------hhhhHHHHHHHHhhcCCCcEEEEec
Confidence            99998643221  111 1      12234444555543 4899775543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.48  E-value=0.24  Score=38.75  Aligned_cols=32  Identities=25%  Similarity=0.201  Sum_probs=28.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      =|.|||+ |..|.+.|..+++.|+  +++++|..+
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~--~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKYK   36 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEEECCB
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccc
Confidence            4889999 9999999999999998  999999753

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.46  E-value=0.24  Score=39.50  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=28.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|.|||| |..|.+.|..+++.|+  ++.++|..+
T Consensus         5 DviVIG~-GpaGl~aA~~aa~~G~--kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFVT   36 (235)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGCC--CEEEECCCC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            3789999 9999999999999998  999999543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.25  E-value=1.6  Score=32.91  Aligned_cols=74  Identities=14%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCC-HHhh-----hCCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ-LENA-----LTGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d-~~ea-----l~~AD  111 (279)
                      .+..+|.|+|+ |-+|...+..++..+ ..+|+..|.++ ....+.++.-.   . +-......+ ..+.     -.++|
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~GAd---~-~in~~~~~~~~~~~~~~~~~~G~d  100 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVFGAT---D-FVNPNDHSEPISQVLSKMTNGGVD  100 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCC---E-EECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHh-hchheeecchHHHHHHHHHcCCc---E-EEcCCCcchhHHHHHHhhccCCcc
Confidence            34568999998 888888887777655 34899999877 23333433311   1 110111111 1111     15899


Q ss_pred             EEEEccC
Q 023671          112 LVIIPAG  118 (279)
Q Consensus       112 iVIitag  118 (279)
                      +|+.+.|
T Consensus       101 ~vid~~G  107 (175)
T d1cdoa2         101 FSLECVG  107 (175)
T ss_dssp             EEEECSC
T ss_pred             eeeeecC
Confidence            9999986

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=0.38  Score=37.74  Aligned_cols=31  Identities=13%  Similarity=0.029  Sum_probs=28.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |.|||+ |..|.+.|..+.+.|.  +++++|...
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            789999 9999999999999998  999999765

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.44  E-value=0.28  Score=38.79  Aligned_cols=33  Identities=18%  Similarity=0.077  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..|.|||| |..|...|..+.+.|.  +|.|+|.+.
T Consensus         6 ~DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            35899999 9999999999999998  999999765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.37  E-value=1.6  Score=32.87  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhh------CCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMD  111 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal------~~AD  111 (279)
                      .+..+|.|+|++|.+|...+..+...+. .+|+..|.++ ....+.++.   . ..+.. ....|..+.+      .+.|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~G---a-~~~i~-~~~~~~~~~~~~~~~~~~~d   99 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAG---A-DYVIN-ASMQDPLAEIRRITESKGVD   99 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHT---C-SEEEE-TTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcC---C-ceeec-cCCcCHHHHHHHHhhcccch
Confidence            3456899999779999988887776664 4899999876 222223222   1 11111 1122332332      4689


Q ss_pred             EEEEccCC
Q 023671          112 LVIIPAGV  119 (279)
Q Consensus       112 iVIitag~  119 (279)
                      +||.++|.
T Consensus       100 ~vid~~g~  107 (170)
T d1jvba2         100 AVIDLNNS  107 (170)
T ss_dssp             EEEESCCC
T ss_pred             hhhccccc
Confidence            99999863

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.37  E-value=0.41  Score=38.11  Aligned_cols=35  Identities=9%  Similarity=0.053  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..+.|||| |+.|..+|..|.+.+...+|.+++...
T Consensus         5 ~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGG-GTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            36889999 999999999998888777999998643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.35  E-value=0.67  Score=39.08  Aligned_cols=104  Identities=12%  Similarity=0.091  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH---hhhhcc-cCCCeEEEEeCCCCHHhhh----CCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT---ADISHM-DTGAVVRGFLGQPQLENAL----TGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~---~DL~~~-~~~~~v~~~~~~~d~~eal----~~A  110 (279)
                      .+++|.|||+ |  +..++..++......+|.++|+++ ....+   .+..+. ...++++.+.  .|-.+-+    +.-
T Consensus        78 ~pk~vLiiGg-G--~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~--~Da~~~l~~~~~~y  152 (285)
T d2o07a1          78 NPRKVLIIGG-G--DGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV--GDGFEFMKQNQDAF  152 (285)
T ss_dssp             SCCEEEEEEC-T--TSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHHHHHHTCSSCE
T ss_pred             CcCeEEEeCC-C--chHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE--ccHHHHHhcCCCCC
Confidence            4569999998 5  233455555555467999999987 21111   111111 1246777654  2433434    346


Q ss_pred             CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEe
Q 023671          111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLI  157 (279)
Q Consensus       111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~  157 (279)
                      |+||+-.-.|.  +.. .      .-..++..+.+++. .|+++++.-
T Consensus       153 DvIi~D~~~p~--~~~-~------~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         153 DVIITDSSDPM--GPA-E------SLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEEEEECC--------------------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEcCCCCC--Ccc-c------ccccHHHHHHHHHhcCCCCeEEEe
Confidence            99998653222  111 1      11233444445543 488876543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=85.29  E-value=2  Score=31.73  Aligned_cols=116  Identities=8%  Similarity=-0.011  Sum_probs=64.0

Q ss_pred             CcEEEEEcCCC---chHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           41 GFKVAILGAAG---GIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        41 ~~KI~IIGA~G---~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      ++.|+|||||-   ..|..++..|...|+  .+.++-.+.....   +..      ...   ..++.+.=...|+|+++.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~---i~g------~~~---~~~l~~i~~~iD~v~v~~   78 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE---LFG------EEA---VASLLDLKEPVDILDVFR   78 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE---ETT------EEC---BSSGGGCCSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce---eec------eec---ccchhhccCCCceEEEec
Confidence            34899999963   568888888989998  8888865431111   111      111   123333224579999975


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cc-hhHHHH
Q 023671          118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM-LDVVRA  194 (279)
Q Consensus       118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~-lds~R~  194 (279)
                      .                .+.+.++++++.+...+++++...--.+-    +.+..++ .|+   ++++= |. .+..|+
T Consensus        79 p----------------~~~v~~~v~~~~~~g~k~i~~q~G~~~~e----~~~~a~~-~Gi---~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          79 P----------------PSALMDHLPEVLALRPGLVWLQSGIRHPE----FEKALKE-AGI---PVVADRCLMVEHKRL  133 (136)
T ss_dssp             C----------------HHHHTTTHHHHHHHCCSCEEECTTCCCHH----HHHHHHH-TTC---CEEESCCHHHHHHHH
T ss_pred             c----------------HHHHHHHHHHHHhhCCCeEEEecCccCHH----HHHHHHH-cCC---EEEcCCccHHHHHHh
Confidence            2                23445555566666776655432211111    2233343 454   67775 74 554444

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.04  E-value=0.42  Score=37.34  Aligned_cols=32  Identities=19%  Similarity=0.135  Sum_probs=28.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      -|.|||+ |..|.+.|..+.+.|.  +++++|...
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4789999 9999999999999998  999999765

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=85.01  E-value=2.6  Score=34.06  Aligned_cols=69  Identities=13%  Similarity=0.062  Sum_probs=40.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCC---CcEEEEEeCCC---chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPL---VSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  115 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~---~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi  115 (279)
                      +||+|||- |.-|.+-|+.|...|+   ..--+.+-.++   ....+.  .+..........    +.+|+.+.||+|.+
T Consensus        45 KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~--~dGf~v~~~~v~----~v~EAv~~ADiVmi  117 (226)
T d1qmga2          45 KQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR--AAGFSEENGTLG----DMWETISGSDLVLL  117 (226)
T ss_dssp             SEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH--HTTCCGGGTCEE----EHHHHHHTCSEEEE
T ss_pred             CEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH--HcCCccCCCccc----CHHHHHhhCCEEEE
Confidence            48999999 9999999999998552   00112333322   222222  111100111111    24789999999999


Q ss_pred             cc
Q 023671          116 PA  117 (279)
Q Consensus       116 ta  117 (279)
                      +.
T Consensus       118 Ll  119 (226)
T d1qmga2         118 LI  119 (226)
T ss_dssp             CS
T ss_pred             ec
Confidence            85

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.91  E-value=0.36  Score=40.48  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .-|.|||+ |..|.+.|..|++.|+  +|+|++..+
T Consensus        24 ~DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGS-GGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             CSEEEECS-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             ceEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            35999999 9999999999999998  899999765

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.89  E-value=0.66  Score=38.29  Aligned_cols=38  Identities=21%  Similarity=0.170  Sum_probs=32.1

Q ss_pred             CCCCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           38 GAAGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        38 ~~~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.+.+++.|+||+|  -+|..+|..|++.|.  +|++.|+++
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            34567899999966  599999999999998  999998754

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.40  E-value=0.79  Score=36.09  Aligned_cols=65  Identities=25%  Similarity=0.320  Sum_probs=43.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  117 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita  117 (279)
                      +.+||+|||- |.-|..-|+.|...|+  +|++ -..+ .....  ....+. -++  .    +.+||.+.||+|.+..
T Consensus        15 k~k~IaViGY-GsQG~AhAlNLrDSG~--~V~V-GLr~gs~s~~--~A~~~G-f~v--~----~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          15 QGKKVAIIGY-GSQGHAHACNLKDSGV--DVTV-GLRSGSATVA--KAEAHG-LKV--A----DVKTAVAAADVVMILT   80 (182)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTC--CEEE-ECCTTCHHHH--HHHHTT-CEE--E----CHHHHHHTCSEEEECS
T ss_pred             CCCEEEEEee-CcHhHHHHhhhhhcCC--CEEE-EcCCCCccHH--HHhhhc-ccc--c----cHHHHhhhcCeeeeec
Confidence            4569999999 9999999999999998  5444 4433 21111  111111 122  1    3679999999999985

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.32  E-value=0.45  Score=38.75  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=28.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +.|||+ |..|...|..+++.|.  +|.|+|.+.
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~--~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNA--KVALVEKSR   34 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            789999 9999999999999998  999999765

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.27  E-value=0.94  Score=34.50  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+..+|.|+||+|.||......+...|.  +++..+.++
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~   63 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTE   63 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCCEEEEEeccccccccccccccccCc--ccccccccc
Confidence            4556999999889999999888888887  777777644

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.73  E-value=0.75  Score=34.93  Aligned_cols=34  Identities=21%  Similarity=-0.004  Sum_probs=27.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      ..||+|||+ |.+|.-.|..+...+ +..++++-+.
T Consensus        45 ~~kVvVIGG-GdtA~D~A~~a~r~G-A~~V~vi~rr   78 (153)
T d1gtea3          45 RGAVIVLGA-GDTAFDCATSALRCG-ARRVFLVFRK   78 (153)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHTT-CSEEEEECSS
T ss_pred             CCEEEEECC-ChhHHHHHHHHHHcC-CcceeEEEeC
Confidence            458999999 999999998888776 3577777554

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=83.46  E-value=0.44  Score=40.46  Aligned_cols=30  Identities=10%  Similarity=0.130  Sum_probs=27.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      -|.|||+ |+-|+.+|..|.+.|+  .|++++.
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcC--eEEEEec
Confidence            3789998 9999999999999998  9999986

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=83.13  E-value=6.7  Score=30.87  Aligned_cols=107  Identities=17%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             EEEEcCCCchHHHH-----HHHHHhCCCCcEEEEEeCCC-chhHHhhhhccc--CCCeEEEEeCCCCHHh---------h
Q 023671           44 VAILGAAGGIGQPL-----AMLMKINPLVSVLHLYDVVN-TPGVTADISHMD--TGAVVRGFLGQPQLEN---------A  106 (279)
Q Consensus        44 I~IIGA~G~VG~~l-----a~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~--~~~~v~~~~~~~d~~e---------a  106 (279)
                      |.++|- .-+|.+.     |..+..++.  .|.++..|. ..+-..-|....  ....+.......++.+         .
T Consensus        13 i~lvGp-~GvGKTTTiaKLA~~~~~~g~--kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~   89 (207)
T d1ls1a2          13 WFLVGL-QGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR   89 (207)
T ss_dssp             EEEECC-TTTTHHHHHHHHHHHHHHTTC--CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCC--cEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHh
Confidence            567898 5578754     345556665  788988876 222111111110  0223333222234322         2


Q ss_pred             hCCCCEEEE-ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe--cCCCCch
Q 023671          107 LTGMDLVII-PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNST  164 (279)
Q Consensus       107 l~~ADiVIi-tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~--TNPvd~~  164 (279)
                      ..++|+|++ |+|...           .|.+.++++.+..+...|+-++++.  +.+-+.+
T Consensus        90 ~~~~d~vlIDTaGr~~-----------~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~  139 (207)
T d1ls1a2          90 LEARDLILVDTAGRLQ-----------IDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL  139 (207)
T ss_dssp             HHTCCEEEEECCCCSS-----------CCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH
T ss_pred             hccCcceeecccccch-----------hhhhhHHHHHHHHhhcCCceEEEEeccccchhHH
Confidence            579999999 676442           1233445555444555677655554  3444444

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=82.65  E-value=5.3  Score=32.93  Aligned_cols=76  Identities=13%  Similarity=0.111  Sum_probs=42.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhh----hcccCCCeEEEEeCCCCHHhhh----CCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADI----SHMDTGAVVRGFLGQPQLENAL----TGM  110 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL----~~~~~~~~v~~~~~~~d~~eal----~~A  110 (279)
                      ++.+|.|||+ |  +..++..++......+|.++|+++ ....+...    ......++++.+..  |-.+-+    +.-
T Consensus        75 ~p~~vLiiGg-G--~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~--D~~~~l~~~~~~y  149 (274)
T d1iy9a_          75 NPEHVLVVGG-G--DGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD--DGFMHIAKSENQY  149 (274)
T ss_dssp             SCCEEEEESC-T--TCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES--CSHHHHHTCCSCE
T ss_pred             CcceEEecCC-C--CcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec--hHHHHHhhcCCCC
Confidence            4569999998 5  233344454544457999999998 21111111    11122466776532  322323    347


Q ss_pred             CEEEEccCCC
Q 023671          111 DLVIIPAGVP  120 (279)
Q Consensus       111 DiVIitag~~  120 (279)
                      |+||+-.--|
T Consensus       150 DvIi~D~~~p  159 (274)
T d1iy9a_         150 DVIMVDSTEP  159 (274)
T ss_dssp             EEEEESCSSC
T ss_pred             CEEEEcCCCC
Confidence            9998865433

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=82.20  E-value=0.56  Score=39.34  Aligned_cols=30  Identities=27%  Similarity=0.428  Sum_probs=27.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671           43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   75 (279)
Q Consensus        43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~   75 (279)
                      -|.|||+ |.-|..+|..|+..|+  +|++++.
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~--kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGY--KVAMFDI   35 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--EEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCC--eEEEEec
Confidence            4889998 9999999999999998  9999985

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.96  E-value=0.56  Score=39.20  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      |.|||+ |..|.+.|..+++.|.  +|+|++...
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~--~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGL--STIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--CEEEEecCC
Confidence            899998 9999999999999998  899998754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.53  E-value=4.4  Score=33.74  Aligned_cols=108  Identities=17%  Similarity=0.238  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHh----hhhcccCCCeEEEEeCCCCHHhhh-----CC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA----DISHMDTGAVVRGFLGQPQLENAL-----TG  109 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~----DL~~~~~~~~v~~~~~~~d~~eal-----~~  109 (279)
                      ++.||.|||+ |  +..++..++......+|.++|+++ ....+.    ........++++.+..  |-.+-+     +.
T Consensus        80 ~pk~VLiiGg-G--~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~--Da~~~l~~~~~~~  154 (290)
T d1xj5a_          80 NPKKVLVIGG-G--DGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG--DGVAFLKNAAEGS  154 (290)
T ss_dssp             CCCEEEEETC-S--SSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES--CHHHHHHTSCTTC
T ss_pred             CCcceEEecC-C--chHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEc--cHHHHHhhccccC
Confidence            4569999998 6  334455555555567999999997 211111    1111122466666532  322222     24


Q ss_pred             CCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe-cCC
Q 023671          110 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNP  160 (279)
Q Consensus       110 ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~-TNP  160 (279)
                      -|+||+-+-.|.  +.. ..++  ..+.++.+-+.+   .|+++++.= .+|
T Consensus       155 yDvIi~D~~dp~--~~~-~~L~--t~eF~~~~~~~L---~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         155 YDAVIVDSSDPI--GPA-KELF--EKPFFQSVARAL---RPGGVVCTQAESL  198 (290)
T ss_dssp             EEEEEECCCCTT--SGG-GGGG--SHHHHHHHHHHE---EEEEEEEEECCCT
T ss_pred             ccEEEEcCCCCC--Ccc-hhhC--CHHHHHHHHHhc---CCCcEEEEecCCc
Confidence            788888653332  221 1222  233343333333   488876543 344

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.33  E-value=0.23  Score=38.28  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=25.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      ..++||+|||+ |.+|...+..+...+....+.++|..
T Consensus         5 ~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~   41 (172)
T d1lc0a1           5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFV   41 (172)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            45679999998 99999887766543323345555543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.24  E-value=0.43  Score=40.02  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCC
Q 023671           42 FKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVN   77 (279)
Q Consensus        42 ~KI~IIGA~G~VG~~la~~L~~~--~~~~ev~L~D~~~   77 (279)
                      .+|+|||+ |..|.+.|+.|+++  ++  +|.++|.+.
T Consensus        51 ~~~~~~g~-g~~g~~~a~~~~~~~~~~--~~~~~~~~~   85 (311)
T d2gjca1          51 SDVIIVGA-GSSGLSAAYVIAKNRPDL--KVCIIESSV   85 (311)
T ss_dssp             ESEEEECC-SHHHHHHHHHHHHHCTTS--CEEEECSSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCCCC--eEEEEEcCC
Confidence            46999999 99999999999865  66  999999876

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.20  E-value=0.51  Score=39.59  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      ..-|.|||+ |..|.+.|+.+++.|.  +|+|++...
T Consensus        19 ~~DVvVIGa-G~aGl~AA~~aa~~G~--~V~vlEK~~   52 (317)
T d1qo8a2          19 TTQVLVVGA-GSAGFNASLAAKKAGA--NVILVDKAP   52 (317)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSS
T ss_pred             ccCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            446999999 9999999999999998  999999765

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.84  E-value=1.2  Score=29.84  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=28.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671           40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   76 (279)
Q Consensus        40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~   76 (279)
                      +..+|.|.||+|-||+.....+...|.  +|+..-.+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~--~Vi~~t~s   65 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGY--QVVAVSGR   65 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTC--CEEEEESC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCC--eEEEEECC
Confidence            456899999999999999998888887  77766544

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=80.77  E-value=1.2  Score=36.26  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      +..+.++|+|-|- |.||+.+|..|.+.|.  .|+..|.+.
T Consensus        35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Ga--kvv~~d~~~   72 (230)
T d1leha1          35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGA--KLVVTDVNK   72 (230)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEeecccH
Confidence            3456789999998 9999999999999997  999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=80.15  E-value=1.4  Score=32.77  Aligned_cols=32  Identities=19%  Similarity=0.130  Sum_probs=27.6

Q ss_pred             EEEEE--cCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671           43 KVAIL--GAAGGIGQPLAMLMKINPLVSVLHLYDVVN   77 (279)
Q Consensus        43 KI~II--GA~G~VG~~la~~L~~~~~~~ev~L~D~~~   77 (279)
                      .+.|+  |+ |++|..+|..|...|.  +|.++...+
T Consensus        41 ~vvi~d~gg-g~ig~e~A~~la~~G~--~Vtlv~~~~   74 (156)
T d1djqa2          41 RVVILNADT-YFMAPSLAEKLATAGH--EVTIVSGVH   74 (156)
T ss_dssp             EEEEEECCC-SSHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             ceEEEecCC-ChHHHHHHHHHHHcCC--eEEEEecCC
Confidence            45444  98 9999999999999998  999998865

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.07  E-value=0.79  Score=36.57  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCc
Q 023671           41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT   78 (279)
Q Consensus        41 ~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~   78 (279)
                      +.||.|||+ |..|.+.|..+++.+. ...|.++|....
T Consensus         1 ~~~viVIG~-GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           1 VTRIVILGG-GPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            459999999 9999998876665443 238999997653

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.05  E-value=2.2  Score=31.85  Aligned_cols=70  Identities=21%  Similarity=0.331  Sum_probs=45.5

Q ss_pred             CCcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC--chhH-HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671           40 AGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVI  114 (279)
Q Consensus        40 ~~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~-~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVI  114 (279)
                      +..||+++|=-  +.|..+++..+..-|.  ++.++-...  .... ...+...  ...+..+   +|+.++++++|+|.
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~--~~~~~~~---~d~~~av~~aDvvy   75 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELREK--GMKVVET---TTLEDVIGKLDVLY   75 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHHT--TCCEEEE---SCTHHHHTTCSEEE
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHhh--cccceee---cCHHHhhccCcEEE
Confidence            45699999972  5678888888877776  888887644  1121 1222221  2334432   47789999999887


Q ss_pred             Ec
Q 023671          115 IP  116 (279)
Q Consensus       115 it  116 (279)
                      .+
T Consensus        76 ~~   77 (157)
T d1ml4a2          76 VT   77 (157)
T ss_dssp             EC
T ss_pred             ee
Confidence            76