Citrus Sinensis ID: 023703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MYVLIVVSIVYSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccccEEEEcccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHcccccccccccccccccccccccccEEEcccccccEEEEccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHcccHHHcccHHHHccccccccHHHccccccccEEEcccccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccccccccccccEcccccccccccEEEEEcccccEEEEccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
MYVLIVVSIVyssdkeepdpegmasMLGLQSYWDSAYADELANFrehghagevwFGADVMDVVASWTKSLCISIsqghmlnhvedlksepveendkylsswsvldigtgNGLLLQELSKqgfsdltgvdyseDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKgtldaiglhpdgplkriMYWDSVSKlvapggllvitscnstkDELVHEVSNLSQRrigvsqeheikdeeacreppfrylnhvrtyptfmfggsegsrVATVAFLRN
Flexible Loop (DISEMBL)
MYVLIVVSIvyssdkeepdPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVsnlsqrrigvsqeheikdeeacreppfryLNHVRTYPTfmfggsegsrvatvaflrn
Low Complexity Region (SEG)
MyvlivvsivyssDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Disordered region (IsUnstruct)
*YVLIVVSIVY**************MLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDL*******NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV*********************CREPPFRYLNHVRTYPTFMFGGSEGSRVATVA****
Disordered Region (DISOPRED)
*****************************QSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Disordered Region (DISEMBL)
MYVLIVVSIVYS**********MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Disordered Region (DISPRO)
MYVLIVVSIVYSS*******EGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEE*DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS**********E***EEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYVLIVVSIVYSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q5JPI9	291	Methyltransferase-like pr	yes	no	0.665	0.635	0.413	5e-36
Q9D853	244	Methyltransferase-like pr	yes	no	0.748	0.852	0.361	3e-33
Q5D013	233	Methyltransferase-like pr	yes	no	0.726	0.866	0.328	2e-31
P40516	257	N-lysine methyltransferas	yes	no	0.748	0.809	0.324	2e-23
Q9P7Z3	238	N-lysine methyltransferas	yes	no	0.758	0.886	0.330	3e-23
Q54XD0	321	Hexaprenyldihydroxybenzoa	no	no	0.392	0.339	0.301	2e-05
A5WVX1	690	Methyltransferase-like pr	no	no	0.374	0.150	0.348	7e-05
A9KGL7	234	3-demethylubiquinone-9 3-	yes	no	0.395	0.470	0.316	0.0002
B6J5Y2	234	3-demethylubiquinone-9 3-	yes	no	0.395	0.470	0.316	0.0003
Q820B5	234	3-demethylubiquinone-9 3-	yes	no	0.395	0.470	0.316	0.0003

>sp|Q5JPI9|MET10_HUMAN Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=1 SV=2

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 28/213 (13%)

Query: 13  SDKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLC 71
           SDK  P  +G   S LG + +WD+ Y  EL  FRE+G  GE+WFG + M+ +  W     
Sbjct: 17  SDKGSPGEDGFVPSALGTREHWDAVYERELQTFREYGDTGEIWFGEESMNRLIRWM---- 72

Query: 72  ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS 131
               Q H +         P++         SVLDIGTGNG+ L EL+K GFS++TG+DYS
Sbjct: 73  ----QKHKI---------PLDA--------SVLDIGTGNGVFLVELAKFGFSNITGIDYS 111

Query: 132 EDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLDAIGLHPDGPL-KRI 189
             AI L+ S+  ++G S IK  V+D L+   +   F + +DKGT DAI L+PD  + KR 
Sbjct: 112 PSAIQLSGSIIEKEGLSNIKLKVEDFLNLSTQLSGFHICIDKGTFDAISLNPDNAIEKRK 171

Query: 190 MYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 222
            Y  S+S+++   G  +ITSCN TK+EL++E S
Sbjct: 172 QYVKSLSRVLKVKGFFLITSCNWTKEELLNEFS 204

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9D853|MET10_MOUSE Methyltransferase-like protein 10 OS=Mus musculus GN=Mettl10 PE=2 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/268 (36%), Positives = 134/268 (50%), Gaps = 60/268 (22%)

Query: 20  PEG-------MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCI 72
           PEG       + S LG + +WD+ Y  EL  F+E+G  GE+WFG + M+ +  W      
Sbjct: 18  PEGSSAADDFVPSALGTREHWDAVYERELRTFQEYGDTGEIWFGEESMNRLIRWM----- 72

Query: 73  SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE 132
              Q H +         P++         SVLDIGTGNG+ L EL K GFS++TG+DYS 
Sbjct: 73  ---QKHKI---------PLDA--------SVLDIGTGNGVFLVELVKHGFSNITGIDYSP 112

Query: 133 DAINLAQSLANRDGFSCIKFLVDDVLD--TKLERQFQLVMDKGTLDAIGLHPDGPL-KRI 189
            AI L+ S+  ++G S I   V+D L+  TKL   F + +DKGT DAI L+PD  + KR 
Sbjct: 113 SAIKLSASILEKEGLSNINLKVEDFLNPSTKLS-GFHVCVDKGTYDAISLNPDNAIEKRK 171

Query: 190 MYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFR 249
            Y  S+S+++   G  +ITSCN TK EL+   S                         F 
Sbjct: 172 QYVMSLSRVLEVKGFFLITSCNWTKAELLDAFSE-----------------------GFE 208

Query: 250 YLNHVRTYPTFMFGGSEGSRVATVAFLR 277
               + T P F FGG  G+ VA + F +
Sbjct: 209 LFEELPT-PKFSFGGRSGNTVAALVFQK 235

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5D013|MET10_DANRE Methyltransferase-like protein 10 OS=Danio rerio GN=mettl10 PE=2 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 51/253 (20%)

Query: 25  SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 84
           S LG + YWD AY  EL  +++ G  GE+WFG + M  V  W                  
Sbjct: 26  SKLGTKEYWDGAYKRELQTYKDIGDVGEIWFGEESMHRVIRW------------------ 67

Query: 85  DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 144
            ++++ + EN       ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L  ++   
Sbjct: 68  -MEAQNISENA------AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVE 120

Query: 145 DGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHP-DGPLKRIMYWDSVSKLVAPG 202
           +G   I   V+D L+   E + F + +DKGT DAI L+P D    +  Y  S+  ++ P 
Sbjct: 121 EGLKNINIQVEDFLNPSTELKGFDVCIDKGTFDAISLNPEDREEAKKHYVTSLRAVMRPN 180

Query: 203 GLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMF 262
           G  +ITSCN TK++L+                          +P F  +  + T P F F
Sbjct: 181 GFFIITSCNWTKEQLLE-----------------------IFKPGFELVRELPT-PNFQF 216

Query: 263 GGSEGSRVATVAF 275
           GG  G+ V  + F
Sbjct: 217 GGVTGNSVTALVF 229

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P40516|SEE1_YEAST N-lysine methyltransferase SEE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEE1 PE=1 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 132/265 (49%), Gaps = 57/265 (21%)

Query: 24  ASMLGLQSYWDSAYADELANFREHGH-AGEVWFGADVMDVVASWTKSLCISISQGHMLNH 82
            S LG + YWD  YA EL NFR +    G+ WF                 S ++  M++ 
Sbjct: 37  TSKLGTKKYWDELYALELENFRRNPQDTGDCWFSD---------------SDAEQKMIDF 81

Query: 83  -VEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQS 140
            V+++ +  + EN       SV+D+GTGNG +L EL +  F   L G+DYSE+++ LA +
Sbjct: 82  LVDNIGAYRISENA------SVVDLGTGNGHMLFELHQTEFQGKLVGIDYSEESVKLASN 135

Query: 141 LANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI---GLHPDGPLKRI-MYWDS 194
           +A   G  + I F   D+     +  ++ +V+DKGTLDAI   G+  +G L  + +Y   
Sbjct: 136 IAEATGVDNFISFQQADIFSGDWKPGKYDIVLDKGTLDAISLSGMKINGKLDVVDVYAGV 195

Query: 195 VSKLVAPGGLLVITSCNSTKDELVH--EVSNLSQRRIGVSQEHEIKDEEACREPPFRYLN 252
           V +++   G+ +ITSCN T+DELV   E  NL   +        IK              
Sbjct: 196 VERILKKDGIFLITSCNFTQDELVKIIETDNLKMWKT-------IK-------------- 234

Query: 253 HVRTYPTFMFGGSEGSRVATVAFLR 277
               YP F FGG +G+ + +VAF++
Sbjct: 235 ----YPVFQFGGVQGATICSVAFVK 255

Lysine methyltransferase. Dimethylates TEF1/eEF1A at 'Lys-316'. May play a role in intracellular transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P7Z3|SEE1_SCHPO N-lysine methyltransferase see1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=see1 PE=2 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 52/263 (19%)

Query: 25  SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 84
           S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +            +H+ 
Sbjct: 7   SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLE------------DHIS 54

Query: 85  DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ------GFSDLTGVDYSEDAINLA 138
               E  E      + + VLD+GTGNG LL  L ++          L GVDYSE AI LA
Sbjct: 55  TSFREVSEA-----APFRVLDLGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLA 109

Query: 139 QSLANRDGFS-CIKFLVDDVL-DTKL-ERQFQLVMDKGTLDAIGLHP---DGPLKRIMYW 192
           +++A    FS  +KF   D++ D+K   + + L++DKGT DAI L     DG     +Y 
Sbjct: 110 KNIARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILDKGTFDAISLSGELLDGRPLNSVYV 169

Query: 193 DSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLN 252
           D V  +++P G+ +ITSCN T  EL                      EE   +  F  ++
Sbjct: 170 DRVRGMLSPNGIFLITSCNWTIQEL----------------------EERFTKNGF-IVH 206

Query: 253 HVRTYPTFMFGGSEGSRVATVAF 275
                P F F GS GS  + +AF
Sbjct: 207 STVPVPVFEFQGSTGSSTSVIAF 229

Lysine methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54XD0|COQ3_DICDI Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial OS=Dictyostelium discoideum GN=coq3 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 17/126 (13%)

Query: 98  LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GF 147
           L   +V+D+G G GLL + LS+ G S + G+D +++ I +A S A+ D            
Sbjct: 126 LEGLNVIDVGCGVGLLTESLSRLGASKVVGLDAAKNNILMAISHASFDQKLNENIQNKSL 185

Query: 148 SCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
           + ++  +++  + + ++QF  V    +L+ I  H D P + I   D +SK+V PGG + I
Sbjct: 186 NYLESTIENFYNIENDQQFDAVC---SLEVIE-HVDNPKQFI---DYLSKIVKPGGSIFI 238

Query: 208 TSCNST 213
           ++ N T
Sbjct: 239 STINKT 244

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 4

>sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAI-NLAQSLANRDGFSCIKFLVDDVLDTK 161
           VL +G GN  L ++L   G+  LT +D SE  + ++ Q  A R     + F   D   T 
Sbjct: 52  VLVVGCGNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAERR--PDLSFQQLDATQTG 109

Query: 162 LER-QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209
            E   FQ+ +DKGTLDA+    DG L   M  + V +++A GG  V  +
Sbjct: 110 FESGSFQVTLDKGTLDAMASEEDGALAGRMLAE-VGRVLAVGGRYVCIT 157

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A9KGL7|UBIG_COXBN 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ubiG PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 93  ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF 152
           E    L    VLD+G G GLL + L+K G + +TGVD SE  I++A++ A +   + I +
Sbjct: 45  EQQITLKGKHVLDVGCGGGLLSEALAKHG-AIVTGVDMSESLIDVAKNHAEQQQLN-INY 102

Query: 153 LVDDV-LDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211
              D+ + TK  ++F ++     L+ +   PD P + I    + + L+ PGG L  ++ N
Sbjct: 103 QCQDIEILTKDAQRFDIITCMELLEHV---PD-PQRMI---KNCAALIKPGGKLFFSTIN 155

Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 2

>sp|B6J5Y2|UBIG_COXB1 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=ubiG PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 93  ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF 152
           E    L    VLD+G G GLL + L+K G + +TGVD SE  I++A++ A +   + I +
Sbjct: 45  EQQITLKGKHVLDVGCGGGLLSEALAKHG-AIVTGVDMSESLIDVAKNHAEQQQLN-INY 102

Query: 153 LVDDV-LDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211
              D+ + TK  ++F ++     L+ +   PD P + I    + + L+ PGG L  ++ N
Sbjct: 103 QCQDIEILTKDAQRFDIITCMELLEHV---PD-PQRMI---KNCAALIKPGGKLFFSTIN 155

Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 2

>sp|Q820B5|UBIG_COXBU 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=ubiG PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 10/120 (8%)

Query: 93  ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF 152
           E    L    VLD+G G GLL + L+K G + +TGVD SE  I++A++ A +   + I +
Sbjct: 45  EQQITLKGKHVLDVGCGGGLLSEALAKHG-AIVTGVDMSESLIDVAKNHAEQQQLN-INY 102

Query: 153 LVDDV-LDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211
              D+ + TK  ++F ++     L+ +   PD P + I    + + L+ PGG L  ++ N
Sbjct: 103 QCQDIEILTKDAQRFDIITCMELLEHV---PD-PQRMI---KNCAALIKPGGKLFFSTIN 155

Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
224124078	342	predicted protein [Populus trichocarpa]	0.964	0.783	0.825	1e-126
356569031	342	PREDICTED: methyltransferase-like protei	0.964	0.783	0.776	1e-123
356499626	342	PREDICTED: methyltransferase-like protei	0.964	0.783	0.773	1e-122
225453070	340	PREDICTED: methyltransferase-like protei	0.964	0.788	0.762	1e-120
357508247	340	Methyltransferase-like protein [Medicago	0.960	0.785	0.764	1e-120
449445949	344	PREDICTED: methyltransferase-like protei	0.964	0.779	0.738	1e-113
255574272	336	conserved hypothetical protein [Ricinus	0.938	0.776	0.750	1e-113
4760710	337	SLL2-S9-protein [Brassica rapa]	0.964	0.795	0.701	1e-108
1518113	337	SLL2 [Brassica napus]	0.964	0.795	0.697	1e-107
15219724	358	putative S locus-linked protein [Arabido	0.974	0.756	0.677	1e-105

>gi|224124078|ref|XP_002330099.1| predicted protein [Populus trichocarpa] gi|222871233|gb|EEF08364.1| predicted protein [Populus trichocarpa]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/269 (82%), Positives = 240/269 (89%), Gaps = 1/269 (0%)

Query: 11  YSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSL 70
           YSSDKEE D EG+ASMLGLQSYWD+AYADELANF EHGHAGEVWFGADVMDV+ASWTK L
Sbjct: 74  YSSDKEELDAEGVASMLGLQSYWDAAYADELANFHEHGHAGEVWFGADVMDVIASWTKGL 133

Query: 71  CISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY 130
           C  ISQG + NHV+D+KSE VEE+DKYLSSWSVLDIGTGNGLLL EL+KQGFSDLTGVDY
Sbjct: 134 CFEISQGCIPNHVDDIKSETVEESDKYLSSWSVLDIGTGNGLLLHELAKQGFSDLTGVDY 193

Query: 131 SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIM 190
           SE AINLA+ LA+RDGFS I  LVDDVL+TKL RQFQLVMDKGTLDAIGLHPDG +KRIM
Sbjct: 194 SEGAINLARRLADRDGFSNINLLVDDVLETKLNRQFQLVMDKGTLDAIGLHPDGAIKRIM 253

Query: 191 YWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHE-IKDEEACREPPFR 249
           YW+SVSKLVA GG+LVITSCN+TKDELV EV N +QRRI VS E E +K  EA R+PPFR
Sbjct: 254 YWESVSKLVAVGGILVITSCNNTKDELVQEVENFNQRRIDVSLESESMKGHEASRDPPFR 313

Query: 250 YLNHVRTYPTFMFGGSEGSRVATVAFLRN 278
           YLNHVRTYPTFMFGGS GSRVATVAFLRN
Sbjct: 314 YLNHVRTYPTFMFGGSVGSRVATVAFLRN 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569031|ref|XP_003552710.1| PREDICTED: methyltransferase-like protein 10-like [Glycine max]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/269 (77%), Positives = 240/269 (89%), Gaps = 1/269 (0%)

Query: 11  YSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSL 70
           YSSDK+EPD E + SMLG QSYWD+AYADEL NFREHGHAGEVWFG DVM+VVASWTK+L
Sbjct: 74  YSSDKDEPDSEAVTSMLGFQSYWDAAYADELTNFREHGHAGEVWFGVDVMEVVASWTKTL 133

Query: 71  CISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY 130
           C+ ISQG + N V+++K+E  E  DK LS+WSVLDIGTGNGLLLQEL+KQGFSDLTG DY
Sbjct: 134 CVEISQGRIPNDVDEVKTEVDELGDKVLSTWSVLDIGTGNGLLLQELAKQGFSDLTGTDY 193

Query: 131 SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIM 190
           SE AINLAQSLANRDGFS +KFLVDDVL+TKLE++F+LVMDKGTLDAIGLHPDGP+KR+M
Sbjct: 194 SERAINLAQSLANRDGFSNVKFLVDDVLETKLEQEFRLVMDKGTLDAIGLHPDGPVKRMM 253

Query: 191 YWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHE-IKDEEACREPPFR 249
           YWDSVSKLVAPGG+LV+TSCNSTKDELV EV + +QR+I  +QE E +K EE CREPPF+
Sbjct: 254 YWDSVSKLVAPGGILVVTSCNSTKDELVQEVESFNQRKIATAQELEALKGEEPCREPPFQ 313

Query: 250 YLNHVRTYPTFMFGGSEGSRVATVAFLRN 278
           Y++HVRTYPTFMFGGS GSRVATVAF+R 
Sbjct: 314 YVSHVRTYPTFMFGGSVGSRVATVAFIRK 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499626|ref|XP_003518638.1| PREDICTED: methyltransferase-like protein 10-like [Glycine max]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/269 (77%), Positives = 239/269 (88%), Gaps = 1/269 (0%)

Query: 11  YSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSL 70
           YSSDK+EPD E + SMLG QSYWDSAYADEL NFREHGH GEVWFG DVM+VVASWTK+L
Sbjct: 74  YSSDKDEPDSEAVTSMLGFQSYWDSAYADELTNFREHGHTGEVWFGVDVMEVVASWTKAL 133

Query: 71  CISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY 130
           C+ ISQGH+ N V+++K+E  +  DK LS+WSVLDIGTGNGLLLQEL+KQGFSDLTG DY
Sbjct: 134 CVEISQGHIPNGVDEVKAEADKLGDKVLSTWSVLDIGTGNGLLLQELAKQGFSDLTGTDY 193

Query: 131 SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIM 190
           SE AI+LAQSLANRDGFS +KFLVDDVL+TKLE++F+LVMDKGTLDAIGLHPDGP+KR+M
Sbjct: 194 SERAISLAQSLANRDGFSNVKFLVDDVLETKLEQEFRLVMDKGTLDAIGLHPDGPVKRMM 253

Query: 191 YWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQE-HEIKDEEACREPPFR 249
           YWDSVS+LVA GG+LVITSCN+TKDELV EV + +QR+I  +QE   +KDEE CREPPF+
Sbjct: 254 YWDSVSRLVASGGILVITSCNNTKDELVQEVESFNQRKIATAQELGAVKDEEPCREPPFQ 313

Query: 250 YLNHVRTYPTFMFGGSEGSRVATVAFLRN 278
           Y+NHVRTYPTFMFGGS GSRVATVAFLR 
Sbjct: 314 YVNHVRTYPTFMFGGSVGSRVATVAFLRK 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453070|ref|XP_002269621.1| PREDICTED: methyltransferase-like protein 10 isoform 1 [Vitis vinifera] gi|296087211|emb|CBI33585.3| unnamed protein product [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/270 (76%), Positives = 241/270 (89%), Gaps = 2/270 (0%)

Query: 11  YSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSL 70
           YSSDK+E D E + SMLGLQSYWD+AYADEL NFREHGH GEVWFG +VM++V SWTK+L
Sbjct: 71  YSSDKDELDSEVVTSMLGLQSYWDAAYADELTNFREHGHTGEVWFGVEVMEIVVSWTKNL 130

Query: 71  CISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY 130
           CI ISQGHM NH++D KSEPVE+ +KYLSSWSVLDIGTGNGLLLQEL+KQGFSDLTG DY
Sbjct: 131 CIEISQGHMPNHLDDAKSEPVEQGEKYLSSWSVLDIGTGNGLLLQELAKQGFSDLTGTDY 190

Query: 131 SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIM 190
           SE AI+LA+SLA+RDGF+ I FLVDDVL++KLERQFQLV+DKGTLDAIGLHPDGP+KRIM
Sbjct: 191 SEGAIDLARSLADRDGFTYINFLVDDVLESKLERQFQLVIDKGTLDAIGLHPDGPIKRIM 250

Query: 191 YWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEI-KDEEACRE-PPF 248
           YWDSVS+LVAPGG+ V+TSCN+TKDEL+ EV + +QR +G SQE +  KD++  R+ PPF
Sbjct: 251 YWDSVSRLVAPGGIFVVTSCNNTKDELIREVDSYNQRVLGASQEPDTPKDQDVSRDSPPF 310

Query: 249 RYLNHVRTYPTFMFGGSEGSRVATVAFLRN 278
           RY+NHVR+YPTFMFGGS GSRVATVAFLR+
Sbjct: 311 RYVNHVRSYPTFMFGGSVGSRVATVAFLRS 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508247|ref|XP_003624412.1| Methyltransferase-like protein [Medicago truncatula] gi|355499427|gb|AES80630.1| Methyltransferase-like protein [Medicago truncatula]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/268 (76%), Positives = 238/268 (88%), Gaps = 1/268 (0%)

Query: 11  YSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSL 70
           YSSDK+EPD E ++SMLG QSYWD+AY DEL NF EHGHAGEVWFG +VM+VVASWTK+L
Sbjct: 72  YSSDKDEPDAEAVSSMLGFQSYWDAAYTDELTNFHEHGHAGEVWFGDNVMEVVASWTKTL 131

Query: 71  CISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY 130
           CI ISQG + NHV+D+K++  E +DK LSSW+VLDIGTGNGLLLQEL+KQGFSDLTG DY
Sbjct: 132 CIDISQGRLPNHVDDVKADAGELDDKLLSSWNVLDIGTGNGLLLQELAKQGFSDLTGTDY 191

Query: 131 SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIM 190
           SE AINLAQSLANRDGF  IKFLVDDVL+TKLE+ FQLVMDKGTLDAIGLHPDGP+KR+M
Sbjct: 192 SERAINLAQSLANRDGFPNIKFLVDDVLETKLEQVFQLVMDKGTLDAIGLHPDGPVKRMM 251

Query: 191 YWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEI-KDEEACREPPFR 249
           YWDSVS+LVAPGG+LV+TSCNSTKDELV EV + +QR+   + E E+ KD+E+CR+P F+
Sbjct: 252 YWDSVSRLVAPGGILVVTSCNSTKDELVQEVESFNQRKSATAPEPEVAKDDESCRDPLFQ 311

Query: 250 YLNHVRTYPTFMFGGSEGSRVATVAFLR 277
           Y++HVRTYPTFMFGGS GSRVATVAFLR
Sbjct: 312 YVSHVRTYPTFMFGGSVGSRVATVAFLR 339

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445949|ref|XP_004140734.1| PREDICTED: methyltransferase-like protein 10-like [Cucumis sativus] gi|449485456|ref|XP_004157174.1| PREDICTED: methyltransferase-like protein 10-like [Cucumis sativus]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/272 (73%), Positives = 227/272 (83%), Gaps = 4/272 (1%)

Query: 11  YSSDKEE--PDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTK 68
           YSSDK+E  PD E + SMLGLQSYWDS YADEL NFREHGH GEVWFG++VM+ VASWTK
Sbjct: 73  YSSDKDEMEPDAEAVTSMLGLQSYWDSQYADELTNFREHGHVGEVWFGSEVMETVASWTK 132

Query: 69  SLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGV 128
           SLC  +SQG  LN   ++K+  V++  K+LSSWSVLDIGTGNGLLLQEL+K+GFS+LTG 
Sbjct: 133 SLCYDVSQGRFLNQAGNVKTLNVDQGSKFLSSWSVLDIGTGNGLLLQELAKEGFSNLTGT 192

Query: 129 DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKR 188
           DYSE AI+LA+SLA RDGFS I FLVDDVL+TKLE QFQLV+DKGTLDAIGLHPDGP+KR
Sbjct: 193 DYSEGAIDLARSLAERDGFSNINFLVDDVLETKLEGQFQLVVDKGTLDAIGLHPDGPIKR 252

Query: 189 IMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACRE--P 246
           IMYW+SVSKLVAPGG+LVITSCNSTKDELV EV N +QRR+    E E  DE    E  P
Sbjct: 253 IMYWESVSKLVAPGGVLVITSCNSTKDELVQEVENFNQRRVNTFAEPESSDETQPEELLP 312

Query: 247 PFRYLNHVRTYPTFMFGGSEGSRVATVAFLRN 278
            F+YL+HVRTYPTF FGGS GSRVATVAFLRN
Sbjct: 313 TFQYLSHVRTYPTFTFGGSVGSRVATVAFLRN 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574272|ref|XP_002528050.1| conserved hypothetical protein [Ricinus communis] gi|223532511|gb|EEF34300.1| conserved hypothetical protein [Ricinus communis]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/269 (75%), Positives = 230/269 (85%), Gaps = 8/269 (2%)

Query: 11  YSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSL 70
           Y+SDKEEPD EG+ SMLGLQSYWDSAYADELANF EHGHAGE+WFG+DVMDVV SWTKSL
Sbjct: 75  YNSDKEEPDGEGVTSMLGLQSYWDSAYADELANFHEHGHAGEIWFGSDVMDVVVSWTKSL 134

Query: 71  CISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY 130
           CI ISQ H+ NHV+      +E++DK L  WSVLD+GTGNGLLLQEL+KQGFSDLTG DY
Sbjct: 135 CIRISQDHISNHVD------IEQDDKCLPYWSVLDLGTGNGLLLQELAKQGFSDLTGADY 188

Query: 131 SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIM 190
           SE AI+LA+ LA+RDGFS I FLVDD+L+TKLERQF+LVMDKGTLDAIGLHPDGP+KRIM
Sbjct: 189 SEGAIDLARKLADRDGFSNINFLVDDILETKLERQFKLVMDKGTLDAIGLHPDGPIKRIM 248

Query: 191 YWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEI-KDEEACREPPFR 249
           YWDSVSKLVA GG+LVITSCN+TKDELV EV N +  R  VSQ  EI KD+ +   P F+
Sbjct: 249 YWDSVSKLVASGGILVITSCNNTKDELVQEVENFNH-RTNVSQGSEISKDQASGDHPIFQ 307

Query: 250 YLNHVRTYPTFMFGGSEGSRVATVAFLRN 278
           Y +HV+TYPTFMFGG+ GSRVATVAFLR+
Sbjct: 308 YFDHVQTYPTFMFGGAVGSRVATVAFLRS 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4760710|dbj|BAA77395.1| SLL2-S9-protein [Brassica rapa]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/271 (70%), Positives = 221/271 (81%), Gaps = 3/271 (1%)

Query: 7   VSIVYSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASW 66
           VS  YSSDKEEPD EG  SMLGLQSYWD+AY+DEL+NFREHGH GEVWFG DVM++V SW
Sbjct: 69  VSSDYSSDKEEPDAEGGQSMLGLQSYWDAAYSDELSNFREHGHTGEVWFGDDVMEIVTSW 128

Query: 67  TKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 126
           TK LC+ ISQ      V D   E  ++ DKYLSSW+VLD+GTGNGLLL +L+K+GFSDLT
Sbjct: 129 TKDLCVEISQKE--TSVSD-NGEVNDQADKYLSSWNVLDLGTGNGLLLHQLAKEGFSDLT 185

Query: 127 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 186
           G DYSE A+ LAQ L+ RDGF  I+F+VDD+LDTKLERQF+LVMDKGTLDAIGLHPDGP+
Sbjct: 186 GTDYSEGAVELAQHLSQRDGFPNIRFMVDDILDTKLERQFKLVMDKGTLDAIGLHPDGPV 245

Query: 187 KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREP 246
           KR+MYWDSVSKLVAPGG+LVITSCN+TKDEL+ EV N + R+  ++ +   +       P
Sbjct: 246 KRVMYWDSVSKLVAPGGILVITSCNNTKDELLEEVENFNMRKSNLTGDVSSEAASGTDHP 305

Query: 247 PFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 277
           PF YL+HVRTYPTFMFGGS GSRVATVAFLR
Sbjct: 306 PFEYLSHVRTYPTFMFGGSVGSRVATVAFLR 336

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1518113|gb|AAB49423.1| SLL2 [Brassica napus]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/271 (69%), Positives = 221/271 (81%), Gaps = 3/271 (1%)

Query: 7   VSIVYSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASW 66
           VS  YSSDKEEPD +G  SMLGLQSYWD+AY+DEL+NFREHGH GEVWFG DVM++V SW
Sbjct: 69  VSSDYSSDKEEPDADGGQSMLGLQSYWDAAYSDELSNFREHGHTGEVWFGDDVMEIVTSW 128

Query: 67  TKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 126
           TK LC+ ISQ  M   V D   E  ++ DKYLSSW+VLD+GTGN LLL +L+K+GFSDLT
Sbjct: 129 TKDLCVEISQKEM--SVSD-NGEVNDQADKYLSSWNVLDLGTGNCLLLHQLAKEGFSDLT 185

Query: 127 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 186
           G DYSE A+ LAQ L+ RDGF  I+F+VDD+LDTKLERQF+LVMDKGTLDAIGLHPDGP+
Sbjct: 186 GTDYSEGAVELAQHLSQRDGFPNIRFMVDDILDTKLERQFKLVMDKGTLDAIGLHPDGPV 245

Query: 187 KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREP 246
           KR+MYWDSVSKLVAPGG+LVITSCN+TKDEL+ EV N + R+  ++ +   +       P
Sbjct: 246 KRVMYWDSVSKLVAPGGILVITSCNNTKDELLEEVENFNMRKSNLTGDVSSEAASGTDYP 305

Query: 247 PFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 277
           PF YL+HVRTYPTFMFGGS GSRVATVAFLR
Sbjct: 306 PFEYLSHVRTYPTFMFGGSVGSRVATVAFLR 336

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219724|ref|NP_176841.1| putative S locus-linked protein [Arabidopsis thaliana] gi|12597759|gb|AAG60072.1|AC013288_6 pheromone receptor, putative (AR401) [Arabidopsis thaliana] gi|332196423|gb|AEE34544.1| putative S locus-linked protein [Arabidopsis thaliana]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/282 (67%), Positives = 224/282 (79%), Gaps = 11/282 (3%)

Query: 7   VSIVYSSDKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVAS 65
           VS  YSSDKEEPD +G   SMLGLQSYWD+AY+DEL NFREHGHAGEVWFG DVM++V S
Sbjct: 76  VSSDYSSDKEEPDADGGGQSMLGLQSYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTS 135

Query: 66  WTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDL 125
           WTK LC+ ISQ +M     D+ +E  ++ DKYLSSW+VLD+GTGNGLLL +L+K+GFSDL
Sbjct: 136 WTKDLCVEISQRNMSVSENDVTTEVNDQADKYLSSWNVLDLGTGNGLLLHQLAKEGFSDL 195

Query: 126 TGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGP 185
           TG DYS+ A+ LAQ L+ RDGF  I+F+VDD+LDTKLE+QF+LVMDKGTLDAIGLHPDGP
Sbjct: 196 TGTDYSDGAVELAQHLSQRDGFPNIRFMVDDILDTKLEQQFKLVMDKGTLDAIGLHPDGP 255

Query: 186 LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEH--------EI 237
           +KR+MYWDSVSKLVAPGG+LVITSCN TKDELV EV N + R+  + +            
Sbjct: 256 VKRVMYWDSVSKLVAPGGILVITSCNHTKDELVEEVENFNIRKSNLCRGDGNDANNVLSS 315

Query: 238 KDEEACR--EPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 277
             E A R  +PPF YL+HVRTYPTFMF GS GSRVATVAFLR
Sbjct: 316 GSEAASRIDQPPFEYLSHVRTYPTFMFSGSVGSRVATVAFLR 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2033329	358	AR401 [Arabidopsis thaliana (t	0.949	0.737	0.676	6.6e-97
MGI|MGI:1919346	244	Mettl10 "methyltransferase lik	0.431	0.491	0.5	4.9e-38
UNIPROTKB|Q5JPI9	291	METTL10 "Methyltransferase-lik	0.435	0.415	0.495	1.5e-37
ZFIN|ZDB-GENE-050306-30	233	mettl10 "methyltransferase lik	0.420	0.502	0.428	3.6e-36
SGD|S000001326	257	SEE1 "Probable lysine methyltr	0.640	0.692	0.363	9.4e-27
POMBASE|SPBC839.14c	238	SPBC839.14c "methyltransferase	0.636	0.743	0.377	6.2e-24
ASPGD|ASPL0000070685	327	AN4543 [Emericella nidulans (t	0.341	0.290	0.353	6.8e-12
UNIPROTKB|G4MP08	276	MGG_16442 "Uncharacterized pro	0.179	0.181	0.431	4.7e-10
TAIR|locus:2101861	252	AT3G60910 "AT3G60910" [Arabido	0.428	0.472	0.300	7e-09
WB|WBGene00017919	236	F29B9.1 [Caenorhabditis elegan	0.647	0.762	0.262	1.9e-08

TAIR|locus:2033329 AR401 [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 186/275 (67%), Positives = 221/275 (80%)

Query:    14 DKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCI 72
             DKEEPD +G   SMLGLQSYWD+AY+DEL NFREHGHAGEVWFG DVM++V SWTK LC+
Sbjct:    83 DKEEPDADGGGQSMLGLQSYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTSWTKDLCV 142

Query:    73 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE 132
              ISQ +M     D+ +E  ++ DKYLSSW+VLD+GTGNGLLL +L+K+GFSDLTG DYS+
Sbjct:   143 EISQRNMSVSENDVTTEVNDQADKYLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSD 202

Query:   133 DAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYW 192
              A+ LAQ L+ RDGF  I+F+VDD+LDTKLE+QF+LVMDKGTLDAIGLHPDGP+KR+MYW
Sbjct:   203 GAVELAQHLSQRDGFPNIRFMVDDILDTKLEQQFKLVMDKGTLDAIGLHPDGPVKRVMYW 262

Query:   193 DSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGV-----SQEHEIKD---EEACR 244
             DSVSKLVAPGG+LVITSCN TKDELV EV N + R+  +     +  + +     E A R
Sbjct:   263 DSVSKLVAPGGILVITSCNHTKDELVEEVENFNIRKSNLCRGDGNDANNVLSSGSEAASR 322

Query:   245 --EPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 277
               +PPF YL+HVRTYPTFMF GS GSRVATVAFLR
Sbjct:   323 IDQPPFEYLSHVRTYPTFMFSGSVGSRVATVAFLR 357

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:1919346 Mettl10 "methyltransferase like 10" [Mus musculus (taxid:10090)]

 Score = 272 (100.8 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
 Identities = 62/124 (50%), Positives = 82/124 (66%)

Query:   102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-- 159
             SVLDIGTGNG+ L EL K GFS++TG+DYS  AI L+ S+  ++G S I   V+D L+  
Sbjct:    82 SVLDIGTGNGVFLVELVKHGFSNITGIDYSPSAIKLSASILEKEGLSNINLKVEDFLNPS 141

Query:   160 TKLERQFQLVMDKGTLDAIGLHPDGPL-KRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 218
             TKL   F + +DKGT DAI L+PD  + KR  Y  S+S+++   G  +ITSCN TK EL+
Sbjct:   142 TKLSG-FHVCVDKGTYDAISLNPDNAIEKRKQYVMSLSRVLEVKGFFLITSCNWTKAELL 200

Query:   219 HEVS 222
                S
Sbjct:   201 DAFS 204

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q5JPI9 METTL10 "Methyltransferase-like protein 10" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 61/123 (49%), Positives = 85/123 (69%)

Query:   102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
             SVLDIGTGNG+ L EL+K GFS++TG+DYS  AI L+ S+  ++G S IK  V+D L+  
Sbjct:    82 SVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSIIEKEGLSNIKLKVEDFLNLS 141

Query:   162 LERQ-FQLVMDKGTLDAIGLHPDGPL-KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH 219
              +   F + +DKGT DAI L+PD  + KR  Y  S+S+++   G  +ITSCN TK+EL++
Sbjct:   142 TQLSGFHICIDKGTFDAISLNPDNAIEKRKQYVKSLSRVLKVKGFFLITSCNWTKEELLN 201

Query:   220 EVS 222
             E S
Sbjct:   202 EFS 204

GO:0008168 "methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-050306-30 mettl10 "methyltransferase like 10" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
 Identities = 51/119 (42%), Positives = 77/119 (64%)

Query:   102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
             ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L  ++   +G   I   V+D L+  
Sbjct:    78 AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVEEGLKNINIQVEDFLNPS 137

Query:   162 LE-RQFQLVMDKGTLDAIGLHP-DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 218
              E + F + +DKGT DAI L+P D    +  Y  S+  ++ P G  +ITSCN TK++L+
Sbjct:   138 TELKGFDVCIDKGTFDAISLNPEDREEAKKHYVTSLRAVMRPNGFFIITSCNWTKEQLL 196

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

SGD|S000001326 SEE1 "Probable lysine methyltransferase involved in dimethylation of eEF1A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 251 (93.4 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 77/212 (36%), Positives = 116/212 (54%)

Query:    25 SMLGLQSYWDSAYADELANFREHGH-AGEVWFGADVMDVVASWTKSLCISISQGHMLNH- 82
             S LG + YWD  YA EL NFR +    G+ WF +D              S ++  M++  
Sbjct:    38 SKLGTKKYWDELYALELENFRRNPQDTGDCWF-SD--------------SDAEQKMIDFL 82

Query:    83 VEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD-LTGVDYSEDAINLAQSL 141
             V+++ +  + EN       SV+D+GTGNG +L EL +  F   L G+DYSE+++ LA ++
Sbjct:    83 VDNIGAYRISENA------SVVDLGTGNGHMLFELHQTEFQGKLVGIDYSEESVKLASNI 136

Query:   142 ANRDGF-SCIKFLVDDVL--DTKLERQFQLVMDKGTLDAI---GLHPDGPLKRI-MYWDS 194
             A   G  + I F   D+   D K   ++ +V+DKGTLDAI   G+  +G L  + +Y   
Sbjct:   137 AEATGVDNFISFQQADIFSGDWK-PGKYDIVLDKGTLDAISLSGMKINGKLDVVDVYAGV 195

Query:   195 VSKLVAPGGLLVITSCNSTKDELVH--EVSNL 224
             V +++   G+ +ITSCN T+DELV   E  NL
Sbjct:   196 VERILKKDGIFLITSCNFTQDELVKIIETDNL 227

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0018027 "peptidyl-lysine dimethylation" evidence=IMP

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IMP

GO:0008168 "methyltransferase activity" evidence=IEA

POMBASE|SPBC839.14c SPBC839.14c "methyltransferase involved in endocytosis (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 242 (90.2 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
 Identities = 77/204 (37%), Positives = 106/204 (51%)

Query:    25 SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 84
             S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +   IS S       V 
Sbjct:     7 SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLEDH-ISTS----FREVS 61

Query:    85 DLKSEPVEENDKYLSSWSVLDIGTGNGL--LLQELSKQGFS--DLTGVDYSEDAINLAQS 140
             +  + P    D        L  G G+ L  LL+E      S   L GVDYSE AI LA++
Sbjct:    62 E--AAPFRVLD--------LGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLAKN 111

Query:   141 LANRDGFSC-IKFLVDDVL-DTKL-ERQFQLVMDKGTLDAIGLHP---DG-PLKRIMYWD 193
             +A    FS  +KF   D++ D+K   + + L++DKGT DAI L     DG PL  + Y D
Sbjct:   112 IARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILDKGTFDAISLSGELLDGRPLNSV-YVD 170

Query:   194 SVSKLVAPGGLLVITSCNSTKDEL 217
              V  +++P G+ +ITSCN T  EL
Sbjct:   171 RVRGMLSPNGIFLITSCNWTIQEL 194

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006897 "endocytosis" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO

ASPGD|ASPL0000070685 AN4543 [Emericella nidulans (taxid:162425)]

 Score = 122 (48.0 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
 Identities = 40/113 (35%), Positives = 58/113 (51%)

Query:   166 FQLVMDKGTLDAIGLHPD-GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL 224
             F +V+DKGT DA+ L  +    +R  Y      LV  GG LV+TSCN T++E+V   ++ 
Sbjct:   231 FDIVLDKGTFDAVSLMVEKSECER--YPGIAGSLVRKGGFLVVTSCNWTEEEIVKWFTS- 287

Query:   225 SQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFGGSEGSRVATVAFLR 277
             ++ +I  S +  +  +             V+ YP F FGG EG  V TV F R
Sbjct:   288 AEIQINGSGKLVVWGK-------------VQ-YPRFRFGGQEGQGVCTVCFQR 326

GO:0005737 "cytoplasm" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IEA

GO:0018027 "peptidyl-lysine dimethylation" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|G4MP08 MGG_16442 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 94 (38.1 bits), Expect = 4.7e-10, Sum P(3) = 4.7e-10
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query:    99 SSWSVLDIGTGNGLLLQELSKQGFSD-LTGVDYSEDAINLAQSLANRDGFS 148
             +S S +D+GTGNG +L  L + G++    GVDYS  A+ LAQ +A    +S
Sbjct:    73 NSTSFVDLGTGNGNMLHALRRAGWAGPCLGVDYSPAAVALAQKVAASTTYS 123

GO:0005737 "cytoplasm" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2101861 AT3G60910 "AT3G60910" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
 Identities = 37/123 (30%), Positives = 60/123 (48%)

Query:    99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 158
             +S  VL +G GN L+ +++ K G+ D+  VD S  AI + Q+         +K++  DV 
Sbjct:    49 TSSRVLMVGCGNSLMSEDMVKDGYEDIMNVDISSVAIEMMQT--KYASVPQLKYMQMDVR 106

Query:   159 DTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 216
             D     +  F  ++DKGTLD++    D  L        VS+L+ PGG   + +    K  
Sbjct:   107 DMSYFEDDSFDTIIDKGTLDSLMCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVR 166

Query:   217 LVH 219
             + H
Sbjct:   167 MPH 169

GO:0003824 "catalytic activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

WB|WBGene00017919 F29B9.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 146 (56.5 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 56/213 (26%), Positives = 92/213 (43%)

Query:    14 DKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGAD-----VMDVVASWT- 67
             D  E   E  +S LG + +WD  Y  EL NF++HG  GEVWFG       V  ++ S T 
Sbjct:     3 DMSEQSVEIASSQLGTKDFWDQRYELELKNFKQHGDEGEVWFGTSSETRIVKYLIDSKTG 62

Query:    68 ---KSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD 124
                K L +    G +L  +     + ++  D Y      +D+        +E  +    +
Sbjct:    63 KDAKILDLGCGNGSVLRKLRSKGFQSLKGVD-YCQK--AVDLSAAASKAEREEEED--EE 117

Query:   125 LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDG 184
             L  +++ +  +++    A  D FS                +F +++DKGT DA+ L  + 
Sbjct:   118 LVDIEFEQ--LDITTPPA--DFFSS---------------KFDVILDKGTWDAMSLSDER 158

Query:   185 PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 217
               +   Y   +   ++ GG  VI SCN T DE+
Sbjct:   159 EARLKAYLGFLDNGLSAGGRFVIFSCNFTFDEM 191

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_1290084 hypothetical protein (343 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	7e-18
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-12
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	5e-12
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	5e-11
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	3e-10
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	6e-08
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	5e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-06
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	4e-06
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	2e-05
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	2e-05
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	2e-05
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	4e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	4e-05
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	8e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	1e-04
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	3e-04
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	6e-04
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	8e-04
PLN02396	322	PLN02396, PLN02396, hexaprenyldihydroxybenzoate me	0.001
TIGR04290	226	TIGR04290, meth_Rta_06860, methyltransferase, Rta_	0.001
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	0.001
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	0.002
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	0.002

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 78.2 bits (193), Expect = 7e-18
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 14/145 (9%)

Query: 102 SVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 159
            VLD+G G G L   L+++    +++ G+D SE+AI  A+  A + G+  ++F+  D+ +
Sbjct: 6   KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65

Query: 160 ---TKLERQ-FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215
               +LE   F +V+    L+ +   PD  L+ I       +++ PGG+L+++       
Sbjct: 66  LPQLQLEDNSFDVVISNEVLNHLP-DPDKVLEEI------IRVLKPGGVLIVSDPV-LLS 117

Query: 216 ELVHEVSNLSQRRIGVSQEHEIKDE 240
           EL   + +L +   GV +    K +
Sbjct: 118 ELPALLEDLERLYAGVLEGAIGKKK 142

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 102 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD- 159
            VLDIG G G L  EL++    + +TGVD S + + LA+  A       I F+  D  D 
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63

Query: 160 TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210
             L   F  V   G    +          +   D+++ L+ PGG LV+ + 
Sbjct: 64  LDLLEGFDAVFIGGGGGDL----------LELLDALASLLKPGGRLVLNAV 104

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 60.9 bits (148), Expect = 5e-12
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--T 160
           VLD+G G G L   L+    + +TGVD S  A+ LA+  A       ++ L  D  +   
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 161 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
           + +  F +++    L  +       L+         +L+ PGG+LV+T
Sbjct: 62  EADESFDVIISDPPLHHLVEDLARFLEEA------RRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K 161
           +LD+G G G +L+ L++ G S +TGVD S++A+ LA+      G   ++F+V D  D   
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP-KVRFVVADARDLPF 59

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGG 203
            E  F LV+       + L    P +        ++L+ PGG
Sbjct: 60  EEGSFDLVI----CAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 78  HMLNHVE-DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 136
           H +N +  D   + + +N K L    VLD+G G GLL + L++ G  ++TG+D SE+ I 
Sbjct: 23  HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIE 81

Query: 137 LAQSLANRDGFSCIKFLVDDV--LDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDS 194
           +A+  A +D    I++    V  L  K  + F +V     L+    H   P +  +   +
Sbjct: 82  VAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE----HVPDP-QAFI--RA 134

Query: 195 VSKLVAPGGLLVITSCNSTK 214
            ++L+ PGG+L  ++ N T 
Sbjct: 135 CAQLLKPGGILFFSTINRTP 154

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 104 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--T 160
           LDIG G G LL+ L +     + TGVD S  A+  A       G      +  DVLD   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 161 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLL 205
                F +V+    L  +   P   L+ +       +L+ PGG+L
Sbjct: 61  LDPGSFDVVVASNVLHHLA-DPRAVLRNLR------RLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 28/112 (25%)

Query: 104 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE 163
           LD+G G GLL + L+++G + +TGVD S + + LA+  A        KF+V D  D    
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP------RKFVVGDAEDLPFP 54

Query: 164 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA-------PGGLLVI 207
              F +V+    L               +     + +        PGG LVI
Sbjct: 55  DESFDVVVSSLVL--------------HHLPDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 100 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV 157
              VLD G G+G  L   ++ G  + + GV+   +A  LA+      G +  ++ +V D 
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 158 LDTKLER--QFQLVMDKGTLDAIGLHPDGPLKRIMYW---DSVSKLVAPGGLLVITSCN 211
            +        F LV+  G         D    R +Y     +  +L+ PGG+LV+ +  
Sbjct: 61  RELLELPDGSFDLVL--GNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITPA 117

This family contains methyltransferase domains. Length = 117

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 21/110 (19%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            VLDIG G G+LL+ L ++GF D+TGVD S  A+              I  L D      
Sbjct: 25  RVLDIGCGTGILLRLLRERGF-DVTGVDPSPAAVL-------------IFSLFDAPDPAV 70

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211
           L  ++ L+      + +   PD P         + +L+ PGG+L+I++  
Sbjct: 71  LAGKYDLIT---AFEVLEHLPDPP----ALLQQLRELLKPGGVLLISTPL 113

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 21/115 (18%)

Query: 102 SVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVD- 155
            +L+IGT  G     +   L   G   LT ++  E+   +A+      G    I+ L+  
Sbjct: 62  RILEIGTAIGYSALWMALALPDDG--RLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119

Query: 156 ---DVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
              DVL   L+  F LV     +DA             Y +    L+ PGGL+V 
Sbjct: 120 DALDVLSRLLDGSFDLVF----IDA------DKADYPEYLERALPLLRPGGLIVA 164

Length = 219

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 100 SWSVLDIGTGNGLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 158
              VLD+G G G+L      +    ++T VD +  A+  A++    +G    +    D+ 
Sbjct: 32  GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLY 91

Query: 159 DTKLERQFQLVM 170
                 +F L++
Sbjct: 92  SAVEPGKFDLII 103

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 25/161 (15%)

Query: 119 KQGFSDLTGVDYSEDAINLAQ---SLANRDGFSCIKFLVDDVLD--TKLER---QFQLVM 170
             G S++T VD S+ A+  A+    L   DG    +F+V DV     K ER   +F L+ 
Sbjct: 237 LGGASEVTSVDLSKRALEWARENAELNGLDG-DRHRFIVGDVFKWLRKAERRGEKFDLI- 294

Query: 171 DKGTLD--AIGLHPDGPLKRIM--YWDSV---SKLVAPGGLLVITSCNS--TKDELVHEV 221
               LD  +               Y D      +L+APGG LV +SC+   + D  +  +
Sbjct: 295 ---ILDPPSFARSKKQ-EFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEII 350

Query: 222 SNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMF 262
           +  +       +  EI+ E    + P         Y   +F
Sbjct: 351 ARAAAAAGR--RAQEIEGEGQPPDHPRNAQIPETLYLKALF 389

Length = 393

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 98  LSSWS-------VLDIGTGNGLLLQELS-KQGFSDLTGVDYSEDAINLAQ-SLANRDGFS 148
           L++++       +LD+G GNG L   L+ +   + + GV+  E+A  +AQ ++A      
Sbjct: 36  LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE 95

Query: 149 CIKFLVDDVLD---TKLERQFQLVM 170
            I+ +  D+ +     +   F L++
Sbjct: 96  RIQVIEADIKEFLKALVFASFDLII 120

Length = 248

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 91  VEENDKYLSS--WSVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANR 144
           VE   + L      VLD+GTG+G     L +E      + +T VD S +A+ +A+  A R
Sbjct: 77  VEAALERLKKGPLRVLDLGTGSGAIALALAKERPD---ARVTAVDISPEALAVARKNAAR 133

Query: 145 DGFSCIKFLVDDVLDTKLERQFQLV 169
            G   ++FL  D  +     +F L+
Sbjct: 134 LGLDNVEFLQSDWFEPLPGGKFDLI 158

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 26/146 (17%)

Query: 78  HMLNHV-EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 136
           H +N +  D   E        L    VLD+G G G+L + L++ G S +TG+D SE  I 
Sbjct: 38  HKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIE 95

Query: 137 LAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL--------HPDGPLKR 188
           +A+  A   G +         +D +      L    G  D +           P+  L+ 
Sbjct: 96  VAKLHALESGVN---------IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRA 146

Query: 189 IMYWDSVSKLVAPGGLLVITSCNSTK 214
                   KLV PGG+L +++ N T 
Sbjct: 147 CA------KLVKPGGILFLSTINRTL 166

Length = 243

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 42.6 bits (97), Expect = 1e-04
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 103 VLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
           VLDIG G G   LL  L  +G   + GVD S + + LA++ A   G   + F+V D L  
Sbjct: 52  VLDIGCGTGRLALLARLGGRGA-YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG 110

Query: 161 KLERQFQLVMDKGTLDAIGLHPDGPLKRIM-YWDSVSKLVAPGGLLVITSCN 211
            L        D  + D +       L         + +++ PGG LV++   
Sbjct: 111 VLP-----FEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157

Length = 257

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 78  HMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 137
           H +N    L+   + E+   L    VLD+G G G+L + +++ G  D+TG+D SE+ I +
Sbjct: 30  HRINP---LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV 85

Query: 138 AQ 139
           A+
Sbjct: 86  AR 87

Length = 233

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 102 SVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 157
            VLD+GTG+G     L +E      +++T VD S +A+ +A+  A     + ++FL  D 
Sbjct: 111 RVLDLGTGSGAIALALAKERPD---AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW 167

Query: 158 LDTKLERQFQLV 169
            +     +F L+
Sbjct: 168 FEPLPGGRFDLI 179

Length = 275

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 102 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
            +LD+GTG+G +   L+K+G  +++  VD S DA+ LA+  A R+G   +  +  D+ + 
Sbjct: 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE- 171

Query: 161 KLERQFQLV 169
            L  +F L+
Sbjct: 172 PLRGKFDLI 180

Length = 280

>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK 161
            +DIG G GLL + L++ G + +TGVD  +  + +A+  A+ D   S I++L        
Sbjct: 135 FIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA 193

Query: 162 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213
            E R+F  V+   +L+ I  H   P +   +  S+S L  P G  V+++ N T
Sbjct: 194 DEGRKFDAVL---SLEVIE-HVANPAE---FCKSLSALTIPNGATVLSTINRT 239

Length = 322

>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 98  LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-LANRDGFSCIKFLVDD 156
           LS WSVLDIG   G    E+ ++G   + G+D   D   LAQ+  A     + I+F    
Sbjct: 48  LSGWSVLDIGCNAGFYSIEMKRRGAGRVLGID--SDPRYLAQARFAAEVLGADIEFRQMS 105

Query: 157 VLDT-KLERQFQLVMDKGTL 175
           V D  +L  +F LV+  G L
Sbjct: 106 VYDLGRLGERFDLVLFMGVL 125

Members of this family are methyltransferases that mark a widely distributed large conserved gene neighborhood of unknown function. It appears most common in soil and rhizosphere bacteria. Length = 226

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           VL+IG G GL+   L  +G   +   D +  A+   +  A  +    +  ++ D+    +
Sbjct: 23  VLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNVG-LDVVMTDLFKG-V 79

Query: 163 ERQFQLVM----------DKGTLDAIGLHPDGPLKRIM----YWDSVSKLVAPGG--LLV 206
             +F +++          D    D + +  DG          + D + +++  GG   L+
Sbjct: 80  RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139

Query: 207 ITSCNSTKDEL 217
            +S N   D  
Sbjct: 140 QSSLNGEPDTF 150

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 98  LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-LANRDGFSCIKFLVDD 156
           L    VLD G G GLL  EL+K+G + +  VD SE  + +A++    RD    ++F V+D
Sbjct: 54  LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND 112

Query: 157 VLDTKLERQFQLV--MD 171
           +L   L  +F +V  MD
Sbjct: 113 LL--SLCGEFDIVVCMD 127

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVL 158
             VL++GTG+G++    +K G   + GVD +  A+  A+  A  +      ++ +  D+ 
Sbjct: 25  DRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF 83

Query: 159 DTKLERQFQLV 169
           +     +F ++
Sbjct: 84  EPFRGDKFDVI 94

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
KOG1271	227	consensus Methyltransferases [General function pre	100.0
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.85
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.83
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.81
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.8
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.77
PRK11207	197	tellurite resistance protein TehB; Provisional	99.77
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.75
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.75
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.74
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.74
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.74
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.74
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.74
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.73
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.73
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.72
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.72
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.71
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.71
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.71
PLN02244	340	tocopherol O-methyltransferase	99.71
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.71
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.71
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.7
PRK12335	287	tellurite resistance protein TehB; Provisional	99.7
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.7
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.7
COG2890	280	HemK Methylase of polypeptide chain release factor	99.69
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.69
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.69
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.69
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.68
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.68
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.68
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.68
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.67
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.67
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.66
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.66
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.66
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.66
PRK14967	223	putative methyltransferase; Provisional	99.66
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.66
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.66
COG4123	248	Predicted O-methyltransferase [General function pr	99.65
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.65
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.65
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.64
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.64
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.64
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.64
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.64
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.63
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.63
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.63
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.63
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.63
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.63
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.62
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.62
PLN02336	475	phosphoethanolamine N-methyltransferase	99.62
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.61
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.6
PRK05785	226	hypothetical protein; Provisional	99.6
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.59
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.59
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.59
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.59
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.59
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.59
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.59
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.59
KOG2904	328	consensus Predicted methyltransferase [General fun	99.58
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.58
PRK14968	188	putative methyltransferase; Provisional	99.57
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.57
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.57
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.57
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.56
PLN02490	340	MPBQ/MSBQ methyltransferase	99.56
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.55
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.55
PRK06922	677	hypothetical protein; Provisional	99.55
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.54
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.54
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.54
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.54
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.53
KOG4300	252	consensus Predicted methyltransferase [General fun	99.53
PRK08317	241	hypothetical protein; Provisional	99.53
PLN03075	296	nicotianamine synthase; Provisional	99.52
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.52
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.52
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.52
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.51
PLN02672	1082	methionine S-methyltransferase	99.51
PRK07402	196	precorrin-6B methylase; Provisional	99.51
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.51
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.5
PRK04266	226	fibrillarin; Provisional	99.5
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.5
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.5
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.5
KOG2361	264	consensus Predicted methyltransferase [General fun	99.49
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.49
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.49
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.48
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.47
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.46
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.46
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.46
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.46
PHA03412	241	putative methyltransferase; Provisional	99.44
PHA03411	279	putative methyltransferase; Provisional	99.44
PLN02336	475	phosphoethanolamine N-methyltransferase	99.44
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.44
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.43
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.43
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.42
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.41
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.41
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.4
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.4
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.4
PRK04457	262	spermidine synthase; Provisional	99.4
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.39
TIGR03438	301	probable methyltransferase. This model represents	99.39
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.39
PRK06202	232	hypothetical protein; Provisional	99.38
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.37
PTZ00146	293	fibrillarin; Provisional	99.37
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.37
PRK00811	283	spermidine synthase; Provisional	99.37
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.37
TIGR00438	188	rrmJ cell division protein FtsJ.	99.35
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.34
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.33
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.31
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.31
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.3
PLN02476	278	O-methyltransferase	99.3
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.28
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.27
COG4122	219	Predicted O-methyltransferase [General function pr	99.26
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.24
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.24
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.23
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.23
PLN02366	308	spermidine synthase	99.23
PRK01581	374	speE spermidine synthase; Validated	99.22
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.21
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.21
KOG2899	288	consensus Predicted methyltransferase [General fun	99.21
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.2
PRK03612	521	spermidine synthase; Provisional	99.18
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.16
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.16
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.16
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.16
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.15
KOG3010	261	consensus Methyltransferase [General function pred	99.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.14
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.13
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.13
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.12
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.11
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.11
COG2520	341	Predicted methyltransferase [General function pred	99.1
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.07
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.06
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.06
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.06
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.05
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.04
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.04
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.01
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.01
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.01
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.0
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.0
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.99
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.99
PLN02823	336	spermine synthase	98.98
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.98
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.97
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.97
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.96
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.95
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.94
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.89
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.89
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.89
PRK04148	134	hypothetical protein; Provisional	98.88
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.88
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.87
COG2521	287	Predicted archaeal methyltransferase [General func	98.85
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.85
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.85
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.81
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.8
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.79
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.79
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.77
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.77
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.73
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.71
PRK00536	262	speE spermidine synthase; Provisional	98.68
COG3897	218	Predicted methyltransferase [General function pred	98.66
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.65
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.65
KOG2730	263	consensus Methylase [General function prediction o	98.64
KOG2940	325	consensus Predicted methyltransferase [General fun	98.64
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.63
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.61
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.57
COG4076	252	Predicted RNA methylase [General function predicti	98.53
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.5
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.44
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.43
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.43
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.38
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.38
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.36
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.31
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.29
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.29
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.28
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.25
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.24
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.23
PRK10742	250	putative methyltransferase; Provisional	98.23
COG0286	489	HsdM Type I restriction-modification system methyl	98.22
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.21
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.21
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.18
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.18
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.18
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.16
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.15
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.15
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.13
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.12
KOG1331	293	consensus Predicted methyltransferase [General fun	98.12
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.04
PF13679	141	Methyltransf_32: Methyltransferase domain	98.02
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.0
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.99
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.99
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.94
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.87
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.85
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.82
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.81
COG4798	238	Predicted methyltransferase [General function pred	97.81
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.8
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.77
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.75
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.74
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.68
KOG3115	249	consensus Methyltransferase-like protein [General	97.67
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.62
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.58
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.57
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.56
PHA01634	156	hypothetical protein	97.5
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.49
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.34
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.3
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.29
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.23
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.22
KOG1227	351	consensus Putative methyltransferase [General func	97.21
PF03269	177	DUF268: Caenorhabditis protein of unknown function	97.21
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.09
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.02
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.02
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.96
PRK11524	284	putative methyltransferase; Provisional	96.92
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.92
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.9
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.85
PRK13699	227	putative methylase; Provisional	96.73
COG1568	354	Predicted methyltransferases [General function pre	96.72
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.69
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.65
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.59
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.37
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.24
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	96.23
TIGR00497	501	hsdM type I restriction system adenine methylase (	96.12
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.12
KOG2920	282	consensus Predicted methyltransferase [General fun	96.12
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.03
COG1565	370	Uncharacterized conserved protein [Function unknow	96.03
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.0
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.75
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.64
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.55
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.49
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.44
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.24
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.14
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.12
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.08
PRK10458	467	DNA cytosine methylase; Provisional	94.95
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.63
PLN02668	386	indole-3-acetate carboxyl methyltransferase	94.62
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.49
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.41
KOG2912	419	consensus Predicted DNA methylase [Function unknow	94.38
COG1255	129	Uncharacterized protein conserved in archaea [Func	94.33
COG4301	321	Uncharacterized conserved protein [Function unknow	94.09
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.03
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	93.99
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.75
PTZ00357	1072	methyltransferase; Provisional	93.72
PRK13699	227	putative methylase; Provisional	93.64
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	93.55
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	93.55
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	93.21
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.16
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.16
COG2961	279	ComJ Protein involved in catabolism of external DN	93.1
PRK11524	284	putative methyltransferase; Provisional	93.08
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.07
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.0
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.98
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.97
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.27
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	92.21
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.09
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	92.0
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.99
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.9
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	91.87
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	91.59
PRK06701	290	short chain dehydrogenase; Provisional	91.51
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	91.28
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	90.95
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	90.8
PRK08265	261	short chain dehydrogenase; Provisional	90.72
PLN02740	381	Alcohol dehydrogenase-like	90.67
PRK07806	248	short chain dehydrogenase; Provisional	90.32
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	90.26
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.24
PRK12939	250	short chain dehydrogenase; Provisional	90.22
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	90.2
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.16
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.15
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	90.13
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	90.0
PRK07109	334	short chain dehydrogenase; Provisional	89.9
PRK08324	681	short chain dehydrogenase; Validated	89.86
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.7
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	89.68
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	89.63
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.61
PRK08589	272	short chain dehydrogenase; Validated	89.6
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	89.29
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	89.29
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	89.28
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.21
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.14
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	89.11
PRK06181	263	short chain dehydrogenase; Provisional	89.1
COG0863	302	DNA modification methylase [DNA replication, recom	88.89
PRK09072	263	short chain dehydrogenase; Provisional	88.87
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	88.86
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	88.8
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	88.78
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	88.69
PLN02827	378	Alcohol dehydrogenase-like	88.63
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	88.47
COG2933	358	Predicted SAM-dependent methyltransferase [General	88.44
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.24
PRK05872	296	short chain dehydrogenase; Provisional	88.23
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	88.18
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	87.99
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.92
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.89
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	87.84
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	87.76
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	87.71
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	87.61
PRK07417	279	arogenate dehydrogenase; Reviewed	87.57
PRK10669	558	putative cation:proton antiport protein; Provision	87.38
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	87.29
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	87.24
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	87.06
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.04
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	86.91
PRK08703	239	short chain dehydrogenase; Provisional	86.87
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	86.87
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	86.75
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	86.61
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.59
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	86.5
PRK06128	300	oxidoreductase; Provisional	86.47
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	86.46
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	86.04
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	86.04
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	85.93
PRK08339	263	short chain dehydrogenase; Provisional	85.68
PRK05867	253	short chain dehydrogenase; Provisional	85.58
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	85.31
PRK06139	330	short chain dehydrogenase; Provisional	85.3
PRK07985	294	oxidoreductase; Provisional	85.13
KOG2360	413	consensus Proliferation-associated nucleolar prote	85.07
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	85.03
PRK07904	253	short chain dehydrogenase; Provisional	84.92
PRK12937	245	short chain dehydrogenase; Provisional	84.85
PRK07890	258	short chain dehydrogenase; Provisional	84.83
PRK08213	259	gluconate 5-dehydrogenase; Provisional	84.8
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	84.56
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	84.46
PRK07832	272	short chain dehydrogenase; Provisional	84.38
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	84.34
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	84.25
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	84.13
PRK06172	253	short chain dehydrogenase; Provisional	84.1
PRK06124	256	gluconate 5-dehydrogenase; Provisional	84.09
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	84.04
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	84.0
PRK03562	621	glutathione-regulated potassium-efflux system prot	83.97
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	83.96
PRK09291	257	short chain dehydrogenase; Provisional	83.74
PRK07677	252	short chain dehydrogenase; Provisional	83.62
PRK11730	715	fadB multifunctional fatty acid oxidation complex	83.54
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	83.54
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	83.53
KOG3924	419	consensus Putative protein methyltransferase invol	83.46
PRK07102	243	short chain dehydrogenase; Provisional	83.41
PRK09496	453	trkA potassium transporter peripheral membrane com	83.3
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	83.23
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	83.09
PRK07035	252	short chain dehydrogenase; Provisional	83.06
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	83.06
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	82.98
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	82.95
PRK07063	260	short chain dehydrogenase; Provisional	82.54
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	82.52
PRK06500	249	short chain dehydrogenase; Provisional	82.32
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	82.18
PRK12744	257	short chain dehydrogenase; Provisional	82.15
PLN02702	364	L-idonate 5-dehydrogenase	82.11
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	82.1
PRK05876	275	short chain dehydrogenase; Provisional	82.07
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	81.94
PRK08862	227	short chain dehydrogenase; Provisional	81.79
PRK06125	259	short chain dehydrogenase; Provisional	81.56
PRK07097	265	gluconate 5-dehydrogenase; Provisional	81.43
COG4017	254	Uncharacterized protein conserved in archaea [Func	81.38
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.35
PRK07791	286	short chain dehydrogenase; Provisional	81.35
PRK05854	313	short chain dehydrogenase; Provisional	81.12
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	81.01
PRK06484	520	short chain dehydrogenase; Validated	80.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	80.9
PRK07814	263	short chain dehydrogenase; Provisional	80.89
PRK07478	254	short chain dehydrogenase; Provisional	80.83
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	80.72
PRK12747	252	short chain dehydrogenase; Provisional	80.57
PRK05693	274	short chain dehydrogenase; Provisional	80.54
PRK12548	289	shikimate 5-dehydrogenase; Provisional	80.5

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=100.00  E-value=4e-37  Score=232.24  Aligned_cols=216  Identities=58%  Similarity=0.943  Sum_probs=188.4

Q ss_pred             CCCCccccCcHHHHHHHHHHHhhchhccCCccccccCcchhhHHhhhhcccccccccCcccccccccccchhhhccccCC
Q 023703           20 PEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLS   99 (278)
Q Consensus        20 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (278)
                      +++..|.+|+++|||..|..+..+|.+++..++.||++....++-.|..+.....                  .+.  ..
T Consensus         8 adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~------------------rv~--~~   67 (227)
T KOG1271|consen    8 ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVIS------------------RVS--KQ   67 (227)
T ss_pred             ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhh------------------hhc--cc
Confidence            5678999999999999999999999999999999999998888889987553100                  011  11


Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc-cCCCccEEEeCCccc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLVMDKGTLD  176 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~~~~  176 (278)
                      ..+|||+|||+|.+...|++.|+. .++|+|+|+.+++.|+..++..++++ |+|.+.|+.+.. ..++||+|..+++++
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence            229999999999999999999875 59999999999999999999999987 999999999865 478999999999999


Q ss_pred             eeccCCCChhhH-HHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcccccccchhhhcccccCCCCceeeeeec
Q 023703          177 AIGLHPDGPLKR-IMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVR  255 (278)
Q Consensus       177 ~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (278)
                      ++.++++.+..+ ..++..+.+.|+|||+++|.+||.+.+++.+.+..                      .+|++...++
T Consensus       148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~----------------------~~f~~~~tvp  205 (227)
T KOG1271|consen  148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN----------------------FNFEYLSTVP  205 (227)
T ss_pred             eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc----------------------CCeEEEEeec
Confidence            999998777655 67889999999999999999999999999998775                      3478888888


Q ss_pred             CCcceeeCCcCCCeEEEEEEEeC
Q 023703          256 TYPTFMFGGSEGSRVATVAFLRN  278 (278)
Q Consensus       256 ~~~~~~~~g~~g~~v~~~~~~~~  278 (278)
                       .|.|.|||..|++|++++|+|.
T Consensus       206 -~ptF~FgG~~G~tvt~vaF~~k  227 (227)
T KOG1271|consen  206 -TPTFMFGGSVGSTVTSVAFLRK  227 (227)
T ss_pred             -cceEEeccccccEEEEEEEecC
Confidence             4699999999999999999883

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.85  E-value=4.8e-21  Score=157.23  Aligned_cols=146  Identities=23%  Similarity=0.357  Sum_probs=94.1

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ...++.+|||+|||||.++..+++. + ..+|+|+|+|+.|++.|+++....+..+++++++|+.++++ +++||+|++.
T Consensus        44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~  123 (233)
T PF01209_consen   44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCS  123 (233)
T ss_dssp             T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHH
Confidence            4467889999999999999999886 3 24899999999999999999998877789999999999876 6899999998


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcccccccchhhhcccccCCCCceeee
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLN  252 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (278)
                      ..+..+.       +....++++.|+|||||++++.+.+.+.......+..++.+.+.+..+..+    ..+...|.|+.
T Consensus       124 fglrn~~-------d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~----~~~~~~Y~yL~  192 (233)
T PF01209_consen  124 FGLRNFP-------DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLL----SGDREAYRYLP  192 (233)
T ss_dssp             S-GGG-S-------SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH----------------------------
T ss_pred             hhHHhhC-------CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccc----ccccccccccc
Confidence            7776665       677788999999999999999998888877888777777777766444443    33446678776

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.83  E-value=2.2e-20  Score=151.86  Aligned_cols=143  Identities=19%  Similarity=0.291  Sum_probs=114.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      +|.+|||+|||||.++..+++. |..+|+|+|+|+.|++.|++++...+..+++|+++|+..+++ +++||++.+.-.+.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr  130 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR  130 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence            7899999999999999999998 545999999999999999999998877679999999999986 68999999988888


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh-hhhhcccccccchhhhcccccCCCCceeee
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS-NLSQRRIGVSQEHEIKDEEACREPPFRYLN  252 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (278)
                      ++.       +...+|+++.|+|||||++++.+.+.+.......+. .++.+.+.|..+.    ....+...|+|+.
T Consensus       131 nv~-------d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~----~~~~~~~~y~yL~  196 (238)
T COG2226         131 NVT-------DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGK----LVAKDAEAYEYLA  196 (238)
T ss_pred             cCC-------CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhce----eeecChHHHHHHH
Confidence            887       888899999999999999999987776654444333 4554434332222    2223345566664

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.81  E-value=1.2e-19  Score=144.98  Aligned_cols=113  Identities=31%  Similarity=0.481  Sum_probs=100.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||.|.++..+|+.|+ +|+|+|+++.+|+.|+.++...++ ++++.+....+.... ++||+|+|..+++
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            4788999999999999999999995 899999999999999999988876 577888888776544 8999999999999


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      |++       +...+++.+.+++||||.+++++.+.+.....-
T Consensus       136 Hv~-------dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~  171 (243)
T COG2227         136 HVP-------DPESFLRACAKLVKPGGILFLSTINRTLKAYLL  171 (243)
T ss_pred             ccC-------CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHH
Confidence            997       778899999999999999999999988765544

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.80  E-value=8.8e-19  Score=128.25  Aligned_cols=108  Identities=31%  Similarity=0.512  Sum_probs=87.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccc-cCCccCCCccEEEeCC-c
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDV-LDTKLERQFQLVMDKG-T  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~-~~~~~~~~fD~v~~~~-~  174 (278)
                      |+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...+. ++++++++|+ ......++||+|++.. .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            5679999999999999999993 335899999999999999999955443 5799999999 4455567899999998 4


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+++.    .......+++.+.+.|+|||++++.++
T Consensus        81 ~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   81 LHFLL----PLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             GGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             ccccc----chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            44332    114667888999999999999999864

...

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.77  E-value=4.2e-18  Score=131.59  Aligned_cols=107  Identities=33%  Similarity=0.551  Sum_probs=93.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhh-C-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~-~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~  173 (278)
                      +++.+|||+|||+|.++..++. . +..+++|+|+|+.+++.|+++++..+++++++.++|+.+++  ..++||+|++.+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence            3567999999999999999994 3 23589999999999999999999999888999999999965  337999999999


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++++.       +...+++++.++|+++|.+++..+.
T Consensus        82 ~l~~~~-------~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFP-------DPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTS-------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhcc-------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            987765       6778889999999999999999877

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.77  E-value=4.8e-18  Score=136.75  Aligned_cols=106  Identities=19%  Similarity=0.294  Sum_probs=91.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .++.+|||+|||+|.++..++++|. +|+|+|+|+.+++.++++....++.++++...|+.+..++++||+|++..++++
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF  107 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence            3567999999999999999999975 899999999999999999988887779999999987766778999999888755


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.     +.....+++++.++|+|||.+++..
T Consensus       108 ~~-----~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207        108 LE-----AKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             CC-----HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            42     4467788899999999999976543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.75  E-value=1.6e-17  Score=134.70  Aligned_cols=107  Identities=21%  Similarity=0.205  Sum_probs=85.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh------------CCCcceEEEEccccCCcc--CC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKL--ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~------------~~~~~~~~~~~d~~~~~~--~~  164 (278)
                      ++.+|||+|||.|..+..|+++|+ +|+|+|+|+.+++.+.+....            ..-.++++.++|+.+...  .+
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            567999999999999999999997 899999999999986442211            011358999999998764  46


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +||.|+....+.++.     +..+..+++.+.++|||||.+++.+..
T Consensus       113 ~fD~i~D~~~~~~l~-----~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       113 PVDAVYDRAALIALP-----EEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CcCEEEechhhccCC-----HHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            799999988776553     567778999999999999987776543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.75  E-value=3.3e-17  Score=137.40  Aligned_cols=122  Identities=20%  Similarity=0.293  Sum_probs=97.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhh---CCCcceEEEEccccCCcc-CCCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANR---DGFSCIKFLVDDVLDTKL-ERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~---~~~~~~~~~~~d~~~~~~-~~~fD~v~  170 (278)
                      ..++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++...   ....+++++++|+.+.+. +++||+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            356789999999999999998876 3 24899999999999999887542   223479999999998775 57899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                      +..+++++.       +...+++++.++|||||++++.+...+.......+..++
T Consensus       151 ~~~~l~~~~-------d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~  198 (261)
T PLN02233        151 MGYGLRNVV-------DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWM  198 (261)
T ss_pred             EecccccCC-------CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHH
Confidence            988887665       667788999999999999999987766555444444333

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.74  E-value=1.2e-17  Score=131.38  Aligned_cols=121  Identities=26%  Similarity=0.433  Sum_probs=94.9

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccE
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQL  168 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~  168 (278)
                      ++..+... ++.+|||+|||+|.++..++..+.. +|+++|+++.+++.+++++..+++.++++...|+.+...+++||+
T Consensus        23 L~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~  101 (170)
T PF05175_consen   23 LLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDL  101 (170)
T ss_dssp             HHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEE
T ss_pred             HHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeE
Confidence            44444333 6779999999999999999998543 799999999999999999999998779999999988766789999


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      |++|+++..-.  ..+......+++.+.+.|+|||.+++......
T Consensus       102 Iv~NPP~~~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~  144 (170)
T PF05175_consen  102 IVSNPPFHAGG--DDGLDLLRDFIEQARRYLKPGGRLFLVINSHL  144 (170)
T ss_dssp             EEE---SBTTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             EEEccchhccc--ccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence            99999964221  22234567888999999999999977654433

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.74  E-value=2.7e-17  Score=129.67  Aligned_cols=106  Identities=27%  Similarity=0.392  Sum_probs=87.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .+++++||+|||.|+.+..|+++|+ .|+++|+|+.+++.+++.++..++ +++..+.|+.+..+++.||+|++..++.+
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I~st~v~~f  106 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFIVSTVVFMF  106 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEEEEEEEecc
Confidence            3567999999999999999999998 799999999999999999888887 49999999998888889999998777766


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +.     +.....+++.+.+.++|||++++.+.
T Consensus       107 L~-----~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen  107 LQ-----RELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             S------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CC-----HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            54     45667788999999999999888653

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.74  E-value=3.3e-17  Score=140.33  Aligned_cols=110  Identities=27%  Similarity=0.457  Sum_probs=95.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      .++.+|||||||+|.++..+++.|. +|+|+|+++.+++.|++++...+. .++.++++|+.+.+. +++||+|++..++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            4567999999999999999998875 899999999999999988765443 368999999987654 5789999999999


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      +|+.       +...+++++.++|||||.+++.+.+....
T Consensus       209 eHv~-------d~~~~L~~l~r~LkPGG~liist~nr~~~  241 (322)
T PLN02396        209 EHVA-------NPAEFCKSLSALTIPNGATVLSTINRTMR  241 (322)
T ss_pred             HhcC-------CHHHHHHHHHHHcCCCcEEEEEECCcCHH
Confidence            9886       66788899999999999999999887654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.74  E-value=5.1e-17  Score=128.90  Aligned_cols=111  Identities=19%  Similarity=0.241  Sum_probs=92.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.|+++.+..++++++++.+|+.+....++||+|+++..  
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--  121 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--  121 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence            45789999999999999998864 345899999999999999999999988779999999988766678999998642  


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                        .       ....+++.+.++|+|||.+++..+.....++..
T Consensus       122 --~-------~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~  155 (187)
T PRK00107        122 --A-------SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAE  155 (187)
T ss_pred             --c-------CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHH
Confidence              1       456677999999999999999987765555443

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.74  E-value=3.9e-17  Score=131.21  Aligned_cols=104  Identities=17%  Similarity=0.268  Sum_probs=87.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++....++ ++.+...|+...+.+++||+|++..+++++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~  107 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMFL  107 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEecccccC
Confidence            457999999999999999999875 899999999999999999887776 478888888765556789999998887655


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .     ......+++++.++|+|||++++..
T Consensus       108 ~-----~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477       108 Q-----AGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             C-----HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            2     3356788899999999999966653

Part of a tellurite-reducing operon tehA and tehB

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.73  E-value=1.9e-17  Score=117.20  Aligned_cols=94  Identities=29%  Similarity=0.508  Sum_probs=81.3

Q ss_pred             EEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccceeccCC
Q 023703          104 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHP  182 (278)
Q Consensus       104 LDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~  182 (278)
                      ||+|||+|..+..+++.+..+|+++|+++.+++.++++....   ++.+.++|..+++. +++||+|++..+++++.   
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~---   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE---   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGSS---
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeecc---
Confidence            899999999999999994459999999999999999988654   35699999999875 58999999999998874   


Q ss_pred             CChhhHHHHHHHHHhcccCCcEEEE
Q 023703          183 DGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       183 ~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                          +...+++++.|+|||||++++
T Consensus        75 ----~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   75 ----DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             ----HHHHHHHHHHHHEEEEEEEEE
T ss_pred             ----CHHHHHHHHHHHcCcCeEEeC
Confidence                888899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.73  E-value=9.3e-17  Score=136.13  Aligned_cols=166  Identities=15%  Similarity=0.149  Sum_probs=117.6

Q ss_pred             cCcchhhHHhhhhc-ccccccccCcccccccccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEe
Q 023703           55 FGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVD  129 (278)
Q Consensus        55 ~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D  129 (278)
                      -++|.+++++.+.. .+...+.++.+.++++ +...+...+..   ..++.+|||+|||+|.++..++... ..+|+++|
T Consensus        74 ~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~-te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avD  152 (284)
T TIGR03533        74 ERIPVAYLTNEAWFAGLEFYVDERVLIPRSP-IAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVD  152 (284)
T ss_pred             CCCcHHHHcCCCeecCcEEEECCCCccCCCc-hHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEE
Confidence            35688888774443 3335677888886652 32222222221   2345799999999999999999872 34899999


Q ss_pred             CChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccceec--------c----------CCCChhhHHH
Q 023703          130 YSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG--------L----------HPDGPLKRIM  190 (278)
Q Consensus       130 ~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~--------~----------~~~~~~~~~~  190 (278)
                      +|+.+++.|++|+..+++. ++.++++|+.+...+++||+|++|+++-...        .          ...+......
T Consensus       153 is~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~  232 (284)
T TIGR03533       153 ISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRR  232 (284)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHH
Confidence            9999999999999988874 5999999987644456899999998863211        0          1122334567


Q ss_pred             HHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          191 YWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       191 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      +++.+.++|+|||.+++.... ..+.....+.
T Consensus       233 il~~a~~~L~~gG~l~~e~g~-~~~~v~~~~~  263 (284)
T TIGR03533       233 ILAEAADHLNENGVLVVEVGN-SMEALEEAYP  263 (284)
T ss_pred             HHHHHHHhcCCCCEEEEEECc-CHHHHHHHHH
Confidence            889999999999999988775 3344444444

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.72  E-value=9.5e-17  Score=140.02  Aligned_cols=167  Identities=16%  Similarity=0.184  Sum_probs=120.7

Q ss_pred             ccccCcchhhHHhh---hhcccccccccCcccccccccccchhhh-ccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEE
Q 023703           52 EVWFGADVMDVVAS---WTKSLCISISQGHMLNHVEDLKSEPVEE-NDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLT  126 (278)
Q Consensus        52 ~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~  126 (278)
                      +|--++|.+++++.   |..++  .+.++.+.|++ +++. ++.. +....++.+|||+|||+|.++..++.. +..+|+
T Consensus       204 RR~~gePlqYIlG~~~F~G~~f--~V~p~vLIPRp-eTE~-LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~Vt  279 (423)
T PRK14966        204 RRLNGEPVAYILGVREFYGRRF--AVNPNVLIPRP-ETEH-LVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVR  279 (423)
T ss_pred             HHHcCCCceeEeeeeeecCcEE--EeCCCccCCCc-cHHH-HHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEE
Confidence            44467788887774   33333  67777777654 2222 3333 334455679999999999999998875 345899


Q ss_pred             EEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCcccee------------------ccCCCChh
Q 023703          127 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLDAI------------------GLHPDGPL  186 (278)
Q Consensus       127 ~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~------------------~~~~~~~~  186 (278)
                      ++|+|+.+++.|++|++.++. +++++++|+.+..  ..++||+|++|+++-.-                  .-..++..
T Consensus       280 AVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~  358 (423)
T PRK14966        280 ASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLS  358 (423)
T ss_pred             EEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHH
Confidence            999999999999999988875 7999999997643  24679999999987211                  01123334


Q ss_pred             hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          187 KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       187 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      ....+++.+.+.|+|||.+++.......+.....+.+
T Consensus       359 ~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~  395 (423)
T PRK14966        359 CIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE  395 (423)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence            4567888889999999999988877666666665554

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.72  E-value=1.3e-16  Score=126.30  Aligned_cols=114  Identities=18%  Similarity=0.254  Sum_probs=94.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||+|.++..++..+ ..+|+++|.|+.+++.++++.+..++++++++++|+.+....++||+|+++. +. 
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~-  119 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LA-  119 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hh-
Confidence            47899999999999999988653 3489999999999999999998888878999999998875568999999875 22 


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                               ....+++.+.++|+|||.+++........+.....+.
T Consensus       120 ---------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~  156 (181)
T TIGR00138       120 ---------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRK  156 (181)
T ss_pred             ---------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHh
Confidence                     3345668889999999999999877776666665544

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.71  E-value=1.9e-16  Score=128.89  Aligned_cols=104  Identities=21%  Similarity=0.190  Sum_probs=83.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh------------CCCcceEEEEccccCCccC--C
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKLE--R  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~------------~~~~~~~~~~~d~~~~~~~--~  164 (278)
                      ++.+|||+|||.|..+..|+++|+ +|+|+|+|+.+++.+.+....            ....++++.++|+.++...  +
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            567999999999999999999997 899999999999987432110            0113589999999987542  6


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .||.|+....+.++.     +..+..+++.+.++|+|||++++.
T Consensus       116 ~fd~v~D~~~~~~l~-----~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        116 DVDAVYDRAALIALP-----EEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             CeeEEEehHhHhhCC-----HHHHHHHHHHHHHHcCCCCeEEEE
Confidence            899999988776654     667788999999999999975554

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.71  E-value=1.1e-16  Score=134.12  Aligned_cols=108  Identities=24%  Similarity=0.356  Sum_probs=93.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--cCCCccEEEeCCcc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVMDKGTL  175 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--~~~~fD~v~~~~~~  175 (278)
                      ++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|+++....++. +++++++|+.+..  .+++||+|++..++
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            457999999999999999999975 8999999999999999999887763 5899999997753  35789999999998


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +++.       +...+++++.++|||||.+++...+...
T Consensus       123 ~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~n~~~  154 (255)
T PRK11036        123 EWVA-------DPKSVLQTLWSVLRPGGALSLMFYNANG  154 (255)
T ss_pred             HhhC-------CHHHHHHHHHHHcCCCeEEEEEEECccH
Confidence            8775       5567889999999999999998777654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.71  E-value=2.4e-16  Score=130.23  Aligned_cols=111  Identities=17%  Similarity=0.315  Sum_probs=93.2

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      ..++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.+++++...+.++++++.+|..+.+. +++||+|++..
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  122 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF  122 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence            356789999999999999999876 3 24899999999999999999987777789999999987654 57899999987


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +++++.       +...+++++.++|+|||.+++.+...+.
T Consensus       123 ~l~~~~-------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~  156 (231)
T TIGR02752       123 GLRNVP-------DYMQVLREMYRVVKPGGKVVCLETSQPT  156 (231)
T ss_pred             ccccCC-------CHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence            776554       5567889999999999999988755443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02244 tocopherol O-methyltransferase

Probab=99.71  E-value=1.7e-16  Score=138.09  Aligned_cols=106  Identities=24%  Similarity=0.396  Sum_probs=92.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....++. ++.++++|+.+.++ +++||+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            567899999999999999999872248999999999999999998887764 59999999988764 5789999999888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+.       +...+++++.++|||||.+++.+.
T Consensus       197 ~h~~-------d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        197 EHMP-------DKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             hccC-------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            8775       667888999999999999999764

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=6.7e-17  Score=133.79  Aligned_cols=115  Identities=21%  Similarity=0.332  Sum_probs=100.8

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeC
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      ..++.+|.+|||||||.|.+++.+|++-..+|+|+++|+++.+.+++++...|++ +++++..|..+..  ++||-|++-
T Consensus        67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSv  144 (283)
T COG2230          67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSV  144 (283)
T ss_pred             hcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeeh
Confidence            3567899999999999999999999993249999999999999999999999997 6999999998754  459999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      +.|+|+.     ......+++.+.++|+|||++++.+...+..
T Consensus       145 gmfEhvg-----~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~  182 (283)
T COG2230         145 GMFEHVG-----KENYDDFFKKVYALLKPGGRMLLHSITGPDQ  182 (283)
T ss_pred             hhHHHhC-----cccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence            9999986     4467889999999999999999987655543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.71  E-value=5.6e-17  Score=136.10  Aligned_cols=113  Identities=23%  Similarity=0.374  Sum_probs=89.0

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      ..+++|.+|||||||.|.++..++++ |+ +|+|+++|++..+.+++++...|+.+ +++...|..+.+  .+||.|++.
T Consensus        58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi  134 (273)
T PF02353_consen   58 LGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSI  134 (273)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEE
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEE
Confidence            45689999999999999999999999 76 89999999999999999999999864 999999988654  499999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      +.++|+.     ......+++++.++|||||++++........
T Consensus       135 ~~~Ehvg-----~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~  172 (273)
T PF02353_consen  135 EMFEHVG-----RKNYPAFFRKISRLLKPGGRLVLQTITHRDP  172 (273)
T ss_dssp             SEGGGTC-----GGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred             echhhcC-----hhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence            9999884     4577889999999999999999876555443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.70  E-value=2.3e-16  Score=126.34  Aligned_cols=150  Identities=14%  Similarity=0.211  Sum_probs=117.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CC------CcEEEEeCChHHHHHHHHHhhhCCCc---ceEEEEccccCCcc-CCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDYSEDAINLAQSLANRDGFS---CIKFLVDDVLDTKL-ERQF  166 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~------~~v~~~D~s~~~i~~a~~~~~~~~~~---~~~~~~~d~~~~~~-~~~f  166 (278)
                      .++.++||++||||.++..+.++ +.      .+|+.+|+||.+++.++++.+..++.   .+.++.+|+.++++ +.+|
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            46689999999999999998886 22      58999999999999999999766553   38899999999986 5889


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcccccccchhhhcccccCCC
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREP  246 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (278)
                      |.......+..++       ++.+.+++++|+|||||++.+..++....+.+..+..-+.....+    .+..+..++..
T Consensus       179 D~yTiafGIRN~t-------h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~Vlp----vlG~~iagd~~  247 (296)
T KOG1540|consen  179 DAYTIAFGIRNVT-------HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLP----VLGEIIAGDRK  247 (296)
T ss_pred             eeEEEecceecCC-------CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhc----hhhHhhhhhHh
Confidence            9998877776665       778888999999999999999999988866666665433333333    34455566667


Q ss_pred             Cceeee-eecCCc
Q 023703          247 PFRYLN-HVRTYP  258 (278)
Q Consensus       247 ~~~~~~-~~~~~~  258 (278)
                      .|+|+. .++.+|
T Consensus       248 sYqYLveSI~rfp  260 (296)
T KOG1540|consen  248 SYQYLVESIRRFP  260 (296)
T ss_pred             hhhhHHhhhhcCC
Confidence            888876 344444

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.70  E-value=4.3e-16  Score=132.68  Aligned_cols=104  Identities=20%  Similarity=0.351  Sum_probs=90.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      ++.+|||+|||+|..+..++..|. +|+|+|+|+.+++.+++++...++ ++++...|+.....+++||+|++..+++++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhhC
Confidence            456999999999999999999875 899999999999999999988887 788999998876667899999998887655


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .     ......+++++.++|+|||.+++..
T Consensus       198 ~-----~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        198 N-----RERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             C-----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2     3466788899999999999977653

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.70  E-value=3.7e-16  Score=132.80  Aligned_cols=170  Identities=16%  Similarity=0.193  Sum_probs=120.5

Q ss_pred             ccccCcchhhHHhhhhc-ccccccccCcccccccccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhCC-CCcEE
Q 023703           52 EVWFGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQG-FSDLT  126 (278)
Q Consensus        52 ~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~  126 (278)
                      ++.-+.|.+++++.+.. .....+..+.+.|+++ +...+...+..   ..+..+|||+|||+|.++..++... ..+|+
T Consensus        64 ~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~e-te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~  142 (284)
T TIGR00536        64 RRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPE-TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVI  142 (284)
T ss_pred             HHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCc-cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEE
Confidence            44556888888874442 2224677777776652 22222222211   2223689999999999999999873 35899


Q ss_pred             EEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCccceec------------------cCCCChhh
Q 023703          127 GVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLDAIG------------------LHPDGPLK  187 (278)
Q Consensus       127 ~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~------------------~~~~~~~~  187 (278)
                      ++|+|+.+++.|++|+..+++.+ +.++++|+.+.....+||+|++|+++-.-.                  ...++...
T Consensus       143 avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~  222 (284)
T TIGR00536       143 AVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNI  222 (284)
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHH
Confidence            99999999999999999888754 999999998754345899999998763211                  01123345


Q ss_pred             HHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          188 RIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       188 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      ...++..+.++|+|||.+++.............+.
T Consensus       223 ~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~  257 (284)
T TIGR00536       223 LRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR  257 (284)
T ss_pred             HHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence            67888999999999999999988776666555443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.70  E-value=1.2e-16  Score=134.61  Aligned_cols=171  Identities=20%  Similarity=0.297  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHhhchhccCCccccccCcchhhHHhhhhcccccccccCccccccc-ccccchhhhccc-cCCCCeEEEEe
Q 023703           30 QSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE-DLKSEPVEENDK-YLSSWSVLDIG  107 (278)
Q Consensus        30 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~vLDiG  107 (278)
                      .+-|...|++...++.    .+++++-.|.-+..+.-.....+.+.+|.-+.+.. .+.+.+++.+.. ..++.+|||+|
T Consensus        94 ~~dW~~~Wk~~~~P~~----vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG  169 (295)
T PF06325_consen   94 EEDWEEAWKKYFKPIR----VGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVG  169 (295)
T ss_dssp             HHCHHHHHHHH---EE----ECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES
T ss_pred             cccchHHHHhcCccEE----ECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence            4567777776555553    22222211111111111233345677777666663 566667777754 46788999999


Q ss_pred             cCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceeccCCCChhh
Q 023703          108 TGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLK  187 (278)
Q Consensus       108 cG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~  187 (278)
                      ||||.+++..+..|+.+|+|+|++|.+++.|++|+..|++.. .+......+ ...++||+|++|-..+          -
T Consensus       170 ~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~-~~~~~~dlvvANI~~~----------v  237 (295)
T PF06325_consen  170 CGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED-LVEGKFDLVVANILAD----------V  237 (295)
T ss_dssp             -TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC-TCCS-EEEEEEES-HH----------H
T ss_pred             CcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc-cccccCCEEEECCCHH----------H
Confidence            999999999999998899999999999999999999999865 333322222 2348899999975543          3


Q ss_pred             HHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          188 RIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       188 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      ...++..+.++|+|||.++++..-....+
T Consensus       238 L~~l~~~~~~~l~~~G~lIlSGIl~~~~~  266 (295)
T PF06325_consen  238 LLELAPDIASLLKPGGYLILSGILEEQED  266 (295)
T ss_dssp             HHHHHHHCHHHEEEEEEEEEEEEEGGGHH
T ss_pred             HHHHHHHHHHhhCCCCEEEEccccHHHHH
Confidence            34566889999999999999976555443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=3.5e-16  Score=131.92  Aligned_cols=167  Identities=21%  Similarity=0.298  Sum_probs=119.9

Q ss_pred             cCcchhhHHhhhh-cccccccccCcccccccccccchhhhccccCCCC-eEEEEecCCCHHHHHHhhCC-CCcEEEEeCC
Q 023703           55 FGADVMDVVASWT-KSLCISISQGHMLNHVEDLKSEPVEENDKYLSSW-SVLDIGTGNGLLLQELSKQG-FSDLTGVDYS  131 (278)
Q Consensus        55 ~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s  131 (278)
                      -+.|.+++++.+. ..+.....++.+.|++ ++...+...+....... +|||+|||||.+++.++... ..+|+|+|+|
T Consensus        65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~-dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis  143 (280)
T COG2890          65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRP-DTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDIS  143 (280)
T ss_pred             CCCCHhHhhccCeecceeeeeCCCceecCC-chHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECC
Confidence            4556677766322 2333478888888876 33322222111221222 79999999999999999984 3499999999


Q ss_pred             hHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceec------------------cCCCChhhHHHHHH
Q 023703          132 EDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG------------------LHPDGPLKRIMYWD  193 (278)
Q Consensus       132 ~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~------------------~~~~~~~~~~~~l~  193 (278)
                      +.+++.|++|+..+++.++.++++|+++.. .++||+|++|++|---.                  ...++......++.
T Consensus       144 ~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~  222 (280)
T COG2890         144 PDALALARENAERNGLVRVLVVQSDLFEPL-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILG  222 (280)
T ss_pred             HHHHHHHHHHHHHcCCccEEEEeeeccccc-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHH
Confidence            999999999999999866777777877643 34999999999872111                  11234456678889


Q ss_pred             HHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          194 SVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       194 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      ++.+.|+|||.+++.......+.....+..
T Consensus       223 ~a~~~l~~~g~l~le~g~~q~~~v~~~~~~  252 (280)
T COG2890         223 EAPDILKPGGVLILEIGLTQGEAVKALFED  252 (280)
T ss_pred             hhHHHcCCCcEEEEEECCCcHHHHHHHHHh
Confidence            999999999999999887777777776654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.69  E-value=6.2e-16  Score=132.25  Aligned_cols=164  Identities=15%  Similarity=0.150  Sum_probs=115.7

Q ss_pred             cCcchhhHHhhhhc-ccccccccCcccccccccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEe
Q 023703           55 FGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVD  129 (278)
Q Consensus        55 ~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D  129 (278)
                      -++|.+++++.|.. .+...+.++.++|++ .+...+...+..   ..++.+|||+|||+|.++..++.. +..+|+++|
T Consensus        86 ~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~-~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avD  164 (307)
T PRK11805         86 ERIPAAYLTNEAWFCGLEFYVDERVLVPRS-PIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVD  164 (307)
T ss_pred             CCccHHHHcCcceEcCcEEEECCCCcCCCC-chHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEe
Confidence            47888888885542 233467778888655 332222222221   112368999999999999999987 335899999


Q ss_pred             CChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccceec------------------cCCCChhhHHH
Q 023703          130 YSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG------------------LHPDGPLKRIM  190 (278)
Q Consensus       130 ~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~------------------~~~~~~~~~~~  190 (278)
                      +|+.+++.|++|++.+++. +++++++|+.+..++++||+|++++++-...                  ....+......
T Consensus       165 is~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~  244 (307)
T PRK11805        165 ISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRR  244 (307)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHH
Confidence            9999999999999988874 4999999987644456899999998763210                  01123344567


Q ss_pred             HHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703          191 YWDSVSKLVAPGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       191 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  220 (278)
                      +++.+.++|+|||.+++..... .......
T Consensus       245 i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~  273 (307)
T PRK11805        245 ILAEAPDYLTEDGVLVVEVGNS-RVHLEEA  273 (307)
T ss_pred             HHHHHHHhcCCCCEEEEEECcC-HHHHHHH
Confidence            8899999999999999976654 3344443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.69  E-value=3.4e-16  Score=142.42  Aligned_cols=171  Identities=12%  Similarity=0.174  Sum_probs=122.2

Q ss_pred             ccccCcchhhHHhhhhc-ccccccccCcccccccccccch---hhhccc-----------------------cCCCCeEE
Q 023703           52 EVWFGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEP---VEENDK-----------------------YLSSWSVL  104 (278)
Q Consensus        52 ~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~vL  104 (278)
                      +|--++|.+++++.|.. .+...+.++.++|+++ ++..+   +..+..                       ..++.+||
T Consensus        65 rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpe-TE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VL  143 (506)
T PRK01544         65 RRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSD-TEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNIL  143 (506)
T ss_pred             HHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCc-HHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEE
Confidence            44467899999885442 2234799999999874 22212   111110                       11346899


Q ss_pred             EEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccceec---
Q 023703          105 DIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG---  179 (278)
Q Consensus       105 DiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~---  179 (278)
                      |+|||+|.++..++.. +..+|+++|+|+.+++.|++|+..+++. ++.++++|+.+....++||+|++|+++-...   
T Consensus       144 DlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~~~~~  223 (506)
T PRK01544        144 ELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKS  223 (506)
T ss_pred             EccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCchhhh
Confidence            9999999999998875 4458999999999999999999888764 5899999987644456899999998863211   


Q ss_pred             ----------------cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          180 ----------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       180 ----------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                                      ...++......+++.+.++|+|||.+++.......+.....+..
T Consensus       224 ~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~  283 (506)
T PRK01544        224 EMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLD  283 (506)
T ss_pred             hcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHh
Confidence                            01123344567788999999999999998766666655555543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.69  E-value=3.9e-17  Score=131.55  Aligned_cols=110  Identities=27%  Similarity=0.432  Sum_probs=90.9

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc------ceEEEEccccCCccCCCccEEEeCC
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------CIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      |.+|||+|||+|.++..|++.|+ +|+|+|+++.+++.|++..+.....      .+++.+.|+.+.  .++||.|+|..
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--ccccceeeeHH
Confidence            47899999999999999999985 8999999999999999985443221      244555665543  45699999999


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      +++|+.       +...++..+.+.|||||.+++++.+.+......
T Consensus       167 vleHV~-------dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~  205 (282)
T KOG1270|consen  167 VLEHVK-------DPQEFLNCLSALLKPNGRLFITTINRTILSFAG  205 (282)
T ss_pred             HHHHHh-------CHHHHHHHHHHHhCCCCceEeeehhhhHHHhhc
Confidence            999997       888899999999999999999998887655443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.68  E-value=9.3e-16  Score=124.32  Aligned_cols=107  Identities=17%  Similarity=0.134  Sum_probs=88.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh------------hCCCcceEEEEccccCCcc----
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDGFSCIKFLVDDVLDTKL----  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~------------~~~~~~~~~~~~d~~~~~~----  162 (278)
                      ++.+||..|||.|..+..|+.+|+ +|+|+|+|+.+++.+.+...            ...-.++++.++|+++++.    
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            457999999999999999999998 79999999999999866210            0111368999999999853    


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .++||+|+....+.+++     +..+..+++.+.++|+|||.+++.+..
T Consensus       122 ~~~fD~VyDra~~~Alp-----p~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        122 LPVFDIWYDRGAYIALP-----NDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             cCCcCeeeeehhHhcCC-----HHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence            26899999988887775     668889999999999999999887653

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.68  E-value=9.1e-16  Score=127.79  Aligned_cols=165  Identities=16%  Similarity=0.162  Sum_probs=115.1

Q ss_pred             ccCcchhhHHhhhhc-ccccccccCcccccccccccchhhhc----cccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEE
Q 023703           54 WFGADVMDVVASWTK-SLCISISQGHMLNHVEDLKSEPVEEN----DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTG  127 (278)
Q Consensus        54 ~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~  127 (278)
                      --++|.+++++.+.. .....+.++.+.|+. .+ ..++..+    ....++.+|||+|||+|.++..++.. +..+|++
T Consensus        38 ~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~-~T-e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~  115 (251)
T TIGR03704        38 VAGLPLEHVLGWAEFCGLRIAVDPGVFVPRR-RT-EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHA  115 (251)
T ss_pred             HcCCCHHHhcccCeEcCeEEEECCCCcCCCc-cH-HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEE
Confidence            356788888885553 233467777777543 22 2233322    11223458999999999999999876 3348999


Q ss_pred             EeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCCccceec----c---------------CCCCh
Q 023703          128 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAIG----L---------------HPDGP  185 (278)
Q Consensus       128 ~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~~~~~~~----~---------------~~~~~  185 (278)
                      +|+|+.+++.|++|++.++   ++++++|+.+...   .++||+|++|+++....    +               ..++.
T Consensus       116 vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl  192 (251)
T TIGR03704       116 ADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGL  192 (251)
T ss_pred             EECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHH
Confidence            9999999999999998765   4788999876432   36799999999874211    0               11223


Q ss_pred             hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          186 LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       186 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      .....+++.+.++|+|||.+++........+....+.+
T Consensus       193 ~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~  230 (251)
T TIGR03704       193 DVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFAR  230 (251)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHH
Confidence            33457888899999999999999877766666665544

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=3.9e-16  Score=130.33  Aligned_cols=139  Identities=22%  Similarity=0.312  Sum_probs=105.3

Q ss_pred             cccccccCcccccc-cccccchhhhccc-cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC
Q 023703           70 LCISISQGHMLNHV-EDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  147 (278)
Q Consensus        70 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~  147 (278)
                      ....+++|.-+.+. .++...++..+.. ..++.+|||+|||||.+++..+..|+.+|+|+|++|.+++.|+.|+..|++
T Consensus       131 ~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v  210 (300)
T COG2264         131 LNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGV  210 (300)
T ss_pred             eEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCC
Confidence            33566777666655 3466666776644 468899999999999999999999988999999999999999999999987


Q ss_pred             cc-eEEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHH
Q 023703          148 SC-IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  218 (278)
Q Consensus       148 ~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  218 (278)
                      .. +.....+.......++||+|++|=..+          -...+...+.+.|||||.++++..-....+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~DvIVANILA~----------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V  272 (300)
T COG2264         211 ELLVQAKGFLLLEVPENGPFDVIVANILAE----------VLVELAPDIKRLLKPGGRLILSGILEDQAESV  272 (300)
T ss_pred             chhhhcccccchhhcccCcccEEEehhhHH----------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHH
Confidence            54 333334443333457999999974322          33466699999999999999998655554433

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.68  E-value=2.6e-16  Score=122.73  Aligned_cols=105  Identities=23%  Similarity=0.284  Sum_probs=83.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      .-.++||+|||.|.++..|+.+ +.+++++|+|+.+++.|++++...  ++|++++.|+.+..++++||+|+...++.++
T Consensus        43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL  119 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLSEVLYYL  119 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES-GGGS
T ss_pred             ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEehHhHcC
Confidence            3458999999999999999999 569999999999999999998754  6899999999998889999999999888766


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .    +..+...++..+...|+|||.+++.+.
T Consensus       120 ~----~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  120 D----DAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             S----SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             C----CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            3    234677888999999999999999876

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.67  E-value=3.6e-16  Score=131.04  Aligned_cols=100  Identities=19%  Similarity=0.219  Sum_probs=85.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++       +++++++|+.+....++||+|+++.+++
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~  100 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPDTDVVVSNAALQ  100 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCCceEEEEehhhh
Confidence            466899999999999999999872 24899999999999999762       5788999998775568999999999998


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.       +...+++++.++|||||.+++..+.
T Consensus       101 ~~~-------d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103        101 WVP-------EHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             hCC-------CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            875       5577889999999999999987543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.67  E-value=9.7e-16  Score=127.74  Aligned_cols=106  Identities=20%  Similarity=0.280  Sum_probs=88.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      .++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|++++...+.. +++++++|+.+.+.+ .+|+|+++.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~  133 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF  133 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence            46789999999999999888762   3358999999999999999999876654 599999999876543 599999988


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++++.     ......+++++.++|||||.+++.+
T Consensus       134 ~l~~l~-----~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        134 TLQFLE-----PSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             HHHhCC-----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            776653     3356778899999999999999986

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.66  E-value=1e-15  Score=128.57  Aligned_cols=102  Identities=22%  Similarity=0.353  Sum_probs=87.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.|+++.     +++.++.+|+.....+.+||+|+++.+++
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  104 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQALDLIFANASLQ  104 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCCccEEEEccChh
Confidence            46779999999999999999886 3358999999999999999874     46889999998766667999999999988


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.       +...+++++.++|||||.+++..+.
T Consensus       105 ~~~-------d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683        105 WLP-------DHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             hCC-------CHHHHHHHHHHhcCCCcEEEEECCC
Confidence            775       5667889999999999999997543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=9.7e-16  Score=132.03  Aligned_cols=105  Identities=22%  Similarity=0.284  Sum_probs=87.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++++|||||||+|.++..++..|...|+|+|+|+.++..++......+ -.++.++.+|+.+.+.+++||+|++.++++
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~  200 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY  200 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence            4678999999999999999999876679999999999876554333222 136899999998877778899999999987


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+.       +...++++++++|+|||.+++.+
T Consensus       201 H~~-------dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        201 HRR-------SPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ccC-------CHHHHHHHHHHhcCCCcEEEEEE
Confidence            764       56778899999999999999875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.66  E-value=2.9e-15  Score=118.92  Aligned_cols=123  Identities=16%  Similarity=0.265  Sum_probs=96.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++..++. ++++..+|+.+.. .++||+|+++.++..
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPYLP   94 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCCCC
Confidence            4567899999999999999999875 899999999999999999988775 6889999987653 458999999998854


Q ss_pred             eccCC--------------CChhhHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHHhh
Q 023703          178 IGLHP--------------DGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVSN  223 (278)
Q Consensus       178 ~~~~~--------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~  223 (278)
                      ..-..              .+......+++++.++|+|||.+++...... ..+....+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~  155 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE  155 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence            43110              1112246788999999999999999876555 5555555543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.66  E-value=2.5e-16  Score=123.21  Aligned_cols=112  Identities=20%  Similarity=0.230  Sum_probs=96.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .+..+|.|+|||+|..+..|+++ +.+.++|+|-|+.|++.|+++.     ++++|..+|+.++.++.++|++++|.+++
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~dllfaNAvlq  103 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTDLLFANAVLQ  103 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccchhhhhhhhh
Confidence            34569999999999999999998 5569999999999999998765     68999999999999999999999999999


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      +++       +...++.++...|.|||.+.+.-+..-.+.....+
T Consensus       104 Wlp-------dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~m  141 (257)
T COG4106         104 WLP-------DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLM  141 (257)
T ss_pred             hcc-------ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHH
Confidence            997       66677899999999999999987765554444433

>PRK14967 putative methyltransferase; Provisional

Probab=99.66  E-value=2.8e-15  Score=123.12  Aligned_cols=125  Identities=25%  Similarity=0.273  Sum_probs=95.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++..+++ ++.++.+|+.+...+++||+|++++++.
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECCCCC
Confidence            456789999999999999999987655899999999999999999988775 6889999987754567899999998764


Q ss_pred             eec--------------cCCCChhhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHHHh
Q 023703          177 AIG--------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS  222 (278)
Q Consensus       177 ~~~--------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~  222 (278)
                      ...              ....+......+++++.++|||||++++..... ...+....+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~  173 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLS  173 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHH
Confidence            221              011122234567889999999999999876543 4445555444

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.66  E-value=4.4e-16  Score=111.77  Aligned_cols=95  Identities=29%  Similarity=0.539  Sum_probs=78.4

Q ss_pred             EEEEecCCCHHHHHHhhC---CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC-Cccc
Q 023703          103 VLDIGTGNGLLLQELSKQ---GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK-GTLD  176 (278)
Q Consensus       103 vLDiGcG~G~~~~~l~~~---~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~-~~~~  176 (278)
                      |||+|||+|..+..+++.   +. .+++|+|+|+.+++.++++....+. +++++++|+.+++. .++||+|++. .+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence            799999999999999876   22 5899999999999999999988765 79999999998764 6799999995 4476


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCc
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGG  203 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG  203 (278)
                      ++.     +.+...+++++.++|+|||
T Consensus        80 ~~~-----~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HLS-----PEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GSS-----HHHHHHHHHHHHHTEEEEE
T ss_pred             CCC-----HHHHHHHHHHHHHHhCCCC
Confidence            653     6678899999999999998

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.66  E-value=3.8e-16  Score=115.16  Aligned_cols=112  Identities=25%  Similarity=0.407  Sum_probs=88.9

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc---cCCCccEEEeCCcc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK---LERQFQLVMDKGTL  175 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~---~~~~fD~v~~~~~~  175 (278)
                      |.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.++...++ .+++++++|..+..   ..++||+|++++++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            458999999999999999998745999999999999999999999876 46999999998865   36899999999998


Q ss_pred             ceecc-CCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          176 DAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       176 ~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ..... ..........+++++.++|+|||.+++..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            53321 1111224567889999999999999988753

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.65  E-value=1.4e-15  Score=123.74  Aligned_cols=134  Identities=20%  Similarity=0.251  Sum_probs=107.7

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc---CC
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ER  164 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~---~~  164 (278)
                      ++..........+|||+|||+|.+++.++++ ...+++++|+.+.+.+.|+++.+.+++. ++++++.|+.++..   ..
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~  114 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA  114 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence            3444444455789999999999999999999 5469999999999999999999998875 49999999998753   35


Q ss_pred             CccEEEeCCccceeccC--C---------CChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          165 QFQLVMDKGTLDAIGLH--P---------DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~--~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      +||+|+||++|......  +         ........+++.+.++|||||.+.++.+.....++...+..
T Consensus       115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~  184 (248)
T COG4123         115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKS  184 (248)
T ss_pred             ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHh
Confidence            69999999998644322  1         11223467889999999999999999988888777777664

>TIGR00452 methyltransferase, putative

Probab=99.65  E-value=1.5e-15  Score=129.58  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=86.5

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..++++|||+|||+|.++..++..|...|+|+|+|+.++..++...+..+ ..++.+..+++.+.+...+||+|++.+++
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL  198 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL  198 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence            35678999999999999999998876689999999999876543222111 13578888888887666789999999999


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .|+.       +...++++++++|||||.+++.+.
T Consensus       199 ~H~~-------dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       199 YHRK-------SPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             hccC-------CHHHHHHHHHHhcCCCCEEEEEEE
Confidence            8775       666788999999999999999753

Known examples to date are restricted to the proteobacteria.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.65  E-value=2.9e-15  Score=130.55  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=88.4

Q ss_pred             CCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCC---cceEEEEccccCCccCCCccEEEeCCcc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      +.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|+++++.++.   .++++...|+.+...+++||+|++|++|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf  308 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF  308 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence            4699999999999999999873 35899999999999999999987753   3588999998765445689999999999


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +...  .........+++.+.++|+|||.++++.
T Consensus       309 h~~~--~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        309 HQQH--ALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             ccCc--cCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            6432  1223345678899999999999999985

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.64  E-value=3.9e-15  Score=126.69  Aligned_cols=131  Identities=21%  Similarity=0.270  Sum_probs=96.0

Q ss_pred             cccccCccccccc-ccccchhhhccc-cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc
Q 023703           72 ISISQGHMLNHVE-DLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC  149 (278)
Q Consensus        72 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~  149 (278)
                      ..+.++..+.+.. .+...++..+.. ..++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++..+++..
T Consensus       130 i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~  209 (288)
T TIGR00406       130 IMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSD  209 (288)
T ss_pred             EEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            4555665554332 233334444432 35678999999999999999988876789999999999999999999887753


Q ss_pred             -eEEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          150 -IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       150 -~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                       +.+...+... ..+++||+|+++...+          ....++.++.++|||||.++++.....
T Consensus       210 ~~~~~~~~~~~-~~~~~fDlVvan~~~~----------~l~~ll~~~~~~LkpgG~li~sgi~~~  263 (288)
T TIGR00406       210 RLQVKLIYLEQ-PIEGKADVIVANILAE----------VIKELYPQFSRLVKPGGWLILSGILET  263 (288)
T ss_pred             ceEEEeccccc-ccCCCceEEEEecCHH----------HHHHHHHHHHHHcCCCcEEEEEeCcHh
Confidence             5666666332 2357899999975432          345677999999999999999876443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.64  E-value=2.5e-15  Score=125.48  Aligned_cols=108  Identities=22%  Similarity=0.351  Sum_probs=82.5

Q ss_pred             chhhhccc-cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCc
Q 023703           89 EPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQF  166 (278)
Q Consensus        89 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~f  166 (278)
                      .++..+.. ..++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.|++++..+++. .+.+..+|.       +|
T Consensus       108 ~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~f  180 (250)
T PRK00517        108 LCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KA  180 (250)
T ss_pred             HHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------Cc
Confidence            34444432 4578899999999999999888887667999999999999999999888762 344433332       69


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      |+|+++...+          ....++.++.++|||||.++++.....
T Consensus       181 D~Vvani~~~----------~~~~l~~~~~~~LkpgG~lilsgi~~~  217 (250)
T PRK00517        181 DVIVANILAN----------PLLELAPDLARLLKPGGRLILSGILEE  217 (250)
T ss_pred             CEEEEcCcHH----------HHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence            9999874322          345667899999999999999875443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.64  E-value=2.4e-15  Score=126.34  Aligned_cols=109  Identities=23%  Similarity=0.386  Sum_probs=89.1

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      .+.++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....  .++.+..+|+.+.+. +++||+|++..+
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~~~~~~~FD~V~s~~~  126 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKKDFPENTFDMIYSRDA  126 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccCCCCCCCeEEEEEhhh
Confidence            44678899999999999999888752248999999999999999987542  469999999987654 578999999776


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +.|+.     ..+...+++++.++|||||.+++....
T Consensus       127 l~h~~-----~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        127 ILHLS-----YADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             HHhCC-----HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            65542     236678889999999999999998753

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.64  E-value=1.5e-15  Score=123.29  Aligned_cols=105  Identities=30%  Similarity=0.375  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh------------CCCcceEEEEccccCCccC--
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVDDVLDTKLE--  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~------------~~~~~~~~~~~d~~~~~~~--  163 (278)
                      .++.+||..|||.|.....|+++|+ +|+|+|+|+.+++.+.+....            ....+|++.++|++++...  
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~  114 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV  114 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred             CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence            4567999999999999999999997 899999999999998543221            0113578999999997653  


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ++||+|+....+.+++     +..+..+.+.+.++|+|||.+++.
T Consensus       115 g~fD~iyDr~~l~Alp-----p~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  115 GKFDLIYDRTFLCALP-----PEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             HSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             CCceEEEEecccccCC-----HHHHHHHHHHHHHHhCCCCcEEEE
Confidence            5799999998887775     678889999999999999995444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.64  E-value=2.4e-15  Score=125.88  Aligned_cols=101  Identities=23%  Similarity=0.333  Sum_probs=85.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++..     ...++++|+...+. +++||+|+++.++++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            46799999999999999998886 489999999999999988642     35678899988764 568999999988876


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +.       +...++.++.++|+|||.++++++..
T Consensus       116 ~~-------d~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        116 CG-------NLSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             cC-------CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            54       56778899999999999999998654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.63  E-value=2.3e-15  Score=123.86  Aligned_cols=104  Identities=21%  Similarity=0.350  Sum_probs=89.1

Q ss_pred             CeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCcccee
Q 023703          101 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      ++|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++. ++.++..|+...+.+++||+|++..+++++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            379999999999999998873 348999999999999999999887764 489999999766556789999999888877


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .       +...+++++.++|+|||.+++.+..
T Consensus        81 ~-------~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       81 K-------DKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             C-------CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            5       5678889999999999999998653

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.63  E-value=3.8e-15  Score=126.11  Aligned_cols=108  Identities=17%  Similarity=0.393  Sum_probs=90.8

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.|+++....++.++++..+|+.+.+. +++||+|+++
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence            3467889999999999988777665 43 3799999999999999999988887789999999988664 5689999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .++++..       +...+++++.++|||||++++...
T Consensus       154 ~v~~~~~-------d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        154 CVINLSP-------DKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             CcccCCC-------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            8876553       456678999999999999999754

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.63  E-value=7.3e-15  Score=109.22  Aligned_cols=103  Identities=19%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++.++.++..|+....  ..++||.|++...
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence            45679999999999999999987 33589999999999999999998887778899999876422  3468999998654


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..          ....+++.+.+.|+|||.+++...
T Consensus        98 ~~----------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        98 GG----------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             ch----------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            32          335778999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.63  E-value=8.6e-15  Score=122.44  Aligned_cols=125  Identities=25%  Similarity=0.346  Sum_probs=96.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .+.+|||+|||+|.++..++.. +..+++|+|+++.+++.+++++...+++++.++++|+.+....++||+|++++++..
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence            3468999999999999999987 334899999999999999999998888779999999987545688999999988753


Q ss_pred             ec----cC---------------CCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          178 IG----LH---------------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       178 ~~----~~---------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      ..    +.               ..+......+++.+.++|+|||.+++........++...+.+
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~  231 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEA  231 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHh
Confidence            21    00               011122357789999999999999998765555555555443

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00740 methyltransferase, putative

Probab=99.63  E-value=7e-15  Score=122.09  Aligned_cols=108  Identities=18%  Similarity=0.254  Sum_probs=88.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      .++.+|||+|||+|..+..+++.   +..+++|+|+|+.+++.|++++...+. .+++++++|+.+.+.+ .+|+|++..
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~  130 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF  130 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence            36679999999999999998874   234899999999999999999876543 3589999999887554 589999887


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++++.     ..+...+++++.++|+|||.+++.+..
T Consensus       131 ~l~~~~-----~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       131 TLQFLP-----PEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             chhhCC-----HHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence            776553     345678889999999999999998743

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.63  E-value=8.9e-15  Score=116.93  Aligned_cols=117  Identities=19%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++++..+++.+++++.+|... ...++||+|++...
T Consensus        28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~v~~~~~  106 (187)
T PRK08287         28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADAIFIGGS  106 (187)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCEEEECCC
Confidence            34577899999999999999998863 34899999999999999999988877779999998753 33568999998654


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec-CCChHHHHHHHhh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSN  223 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~  223 (278)
                      ..          ....+++.+.+.|+|||.+++... .....+....+.+
T Consensus       107 ~~----------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~  146 (187)
T PRK08287        107 GG----------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEK  146 (187)
T ss_pred             cc----------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHH
Confidence            32          234567889999999999988753 3333444444443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.62  E-value=5.3e-15  Score=119.50  Aligned_cols=124  Identities=16%  Similarity=0.193  Sum_probs=91.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc-cCCc--c-CCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDTK--L-ERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~-~~~~--~-~~~fD~v~~~~  173 (278)
                      ++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|++++...+++++.++++|+ ...+  . +++||+|+++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            5679999999999999999876 3358999999999999999999888877899999999 5443  2 57899999864


Q ss_pred             ccceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH-HHHHHHh
Q 023703          174 TLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD-ELVHEVS  222 (278)
Q Consensus       174 ~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~  222 (278)
                      +..... .+.........+++++.++|||||.+++.+.+.... ++.+.+.
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~  170 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLS  170 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence            321111 011111124667899999999999999987655432 3444443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.62  E-value=6.1e-17  Score=115.82  Aligned_cols=95  Identities=32%  Similarity=0.424  Sum_probs=64.1

Q ss_pred             EEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC---CccCCCccEEEeCCccceec
Q 023703          104 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---TKLERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       104 LDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~  179 (278)
                      ||+|||+|.++..+++. +..+++++|+|+.+++.+++++......+......+..+   ....++||+|++..+++++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            79999999999999887 345999999999999999998887764444444433333   33346999999999999884


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCcEE
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGGLL  205 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG~l  205 (278)
                             +...+++++.++|||||.|
T Consensus        81 -------~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 -------DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --------HHHHHHHHTTT-TSS-EE
T ss_pred             -------hHHHHHHHHHHHcCCCCCC
Confidence                   7778889999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.62  E-value=6e-15  Score=134.44  Aligned_cols=107  Identities=22%  Similarity=0.304  Sum_probs=90.4

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      ..++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+ .++.+.++|+...+. +++||+|++..++
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l  342 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTI  342 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCcc
Confidence            35678999999999999999988632489999999999999998875443 368999999988764 5789999999998


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .|+.       +...+++++.++|||||.+++.+..
T Consensus       343 ~h~~-------d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        343 LHIQ-------DKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             cccC-------CHHHHHHHHHHHcCCCeEEEEEEec
Confidence            8875       6678889999999999999998643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.61  E-value=1.6e-14  Score=122.48  Aligned_cols=148  Identities=23%  Similarity=0.292  Sum_probs=103.3

Q ss_pred             ccccCcccccccccccchhhhc---cccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc
Q 023703           73 SISQGHMLNHVEDLKSEPVEEN---DKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS  148 (278)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~  148 (278)
                      ....+.+.|+++  ...++..+   ....++.+|||+|||+|.++..++... ..+++++|+|+.+++.|++++......
T Consensus        81 ~~~~~~lipr~~--te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~  158 (275)
T PRK09328         81 KVSPGVLIPRPE--TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGA  158 (275)
T ss_pred             EECCCceeCCCC--cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCC
Confidence            455556655432  12222322   233467799999999999999999873 358999999999999999998733334


Q ss_pred             ceEEEEccccCCccCCCccEEEeCCccceec----c---------------CCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          149 CIKFLVDDVLDTKLERQFQLVMDKGTLDAIG----L---------------HPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       149 ~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~----~---------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.++.+|+.+....++||+|++++++....    +               +..+......+++++.++|+|||.+++..
T Consensus       159 ~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        159 RVEFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             cEEEEEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            6999999997654457899999998873211    0               11223445678889999999999999977


Q ss_pred             cCCChHHHHHHHh
Q 023703          210 CNSTKDELVHEVS  222 (278)
Q Consensus       210 ~~~~~~~~~~~~~  222 (278)
                      .......+...+.
T Consensus       239 g~~~~~~~~~~l~  251 (275)
T PRK09328        239 GYDQGEAVRALLA  251 (275)
T ss_pred             CchHHHHHHHHHH
Confidence            6554444444433

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.60  E-value=1.7e-14  Score=117.42  Aligned_cols=101  Identities=17%  Similarity=0.263  Sum_probs=84.3

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  172 (278)
                      ...++.+|||||||+|.++..+++. +. .+|+++|+++.+++.++++++..++.+++++++|..... ..++||+|++.
T Consensus        73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~  152 (212)
T PRK13942         73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT  152 (212)
T ss_pred             CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence            4568899999999999999988876 32 489999999999999999999888878999999987654 35789999987


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .....+.             +.+.+.|||||++++..
T Consensus       153 ~~~~~~~-------------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        153 AAGPDIP-------------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcccch-------------HHHHHhhCCCcEEEEEE
Confidence            6654332             56777899999998865

>PRK05785 hypothetical protein; Provisional

Probab=99.60  E-value=3.6e-15  Score=122.43  Aligned_cols=139  Identities=15%  Similarity=0.172  Sum_probs=96.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||||.++..+++....+|+|+|+|+.|++.|+++        ..++++|+.+.++ +++||+|++..++++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~  122 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHA  122 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence            4679999999999999999987223899999999999999863        1356888888765 688999999988876


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcccccccchhhhcccccCCCCceeee-eecC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLN-HVRT  256 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  256 (278)
                      +.       +....++++.++|||. ..++ +.+.+.......+..++...+.+..+..+    ..+...|.++. .+..
T Consensus       123 ~~-------d~~~~l~e~~RvLkp~-~~il-e~~~p~~~~~~~~~~~y~~~~~P~~~~~~----~~~~~~Y~yl~~si~~  189 (226)
T PRK05785        123 SD-------NIEKVIAEFTRVSRKQ-VGFI-AMGKPDNVIKRKYLSFYLRYIMPYIACLA----GAKCRDYKYIYYIYER  189 (226)
T ss_pred             cC-------CHHHHHHHHHHHhcCc-eEEE-EeCCCCcHHHHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Confidence            64       6677889999999994 2233 33333334455555565555544333322    33345576665 2444


Q ss_pred             Cc
Q 023703          257 YP  258 (278)
Q Consensus       257 ~~  258 (278)
                      +|
T Consensus       190 f~  191 (226)
T PRK05785        190 LP  191 (226)
T ss_pred             CC
Confidence            43

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.59  E-value=2e-14  Score=116.40  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=83.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc-cCCCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-LERQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~  172 (278)
                      ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++. +++++.+|..+.. ..++||+|++.
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~  149 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT  149 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence            457789999999999999888875 2 248999999999999999999888765 4899999998743 34689999998


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .++.++.             +++.+.|+|||++++...
T Consensus       150 ~~~~~~~-------------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        150 AAASTIP-------------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             cCcchhh-------------HHHHHhcCcCcEEEEEEc
Confidence            8766553             578899999999988653

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.59  E-value=2.6e-14  Score=123.86  Aligned_cols=108  Identities=19%  Similarity=0.254  Sum_probs=88.2

Q ss_pred             CCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703          100 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      ..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++++.+++ ..++...|+... .+++||+|+++++|+..
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~fDlIvsNPPFH~g  274 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGRFDMIISNPPFHDG  274 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCCccEEEECCCccCC
Confidence            4589999999999999999873 34899999999999999999998876 467788887653 46789999999998642


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .  .........+++++.+.|||||.++++...
T Consensus       275 ~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        275 I--QTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             c--cccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            1  112335678889999999999999888644

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=2.1e-14  Score=119.27  Aligned_cols=109  Identities=22%  Similarity=0.256  Sum_probs=89.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .+.+|||+|||.|.+++.+++.. ..+++-+|+|..+++.+++|+..+++++..+...|..+...+ +||+|++|++|+.
T Consensus       158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~  236 (300)
T COG2813         158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHA  236 (300)
T ss_pred             CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccC
Confidence            34499999999999999999984 469999999999999999999999887667778888765444 9999999999963


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      =.  .....-...+++.+.+.|++||.|.++..
T Consensus       237 G~--~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         237 GK--AVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             Cc--chhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            21  11112334788999999999999998865

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.59  E-value=1.6e-14  Score=117.99  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=85.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|.++..++....  .+|+++|+++.+++.|+++++..++++++++.+|..+... ..+||+|++.
T Consensus        74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~  153 (215)
T TIGR00080        74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT  153 (215)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence            456788999999999999999988732  2599999999999999999999988889999999976533 4689999987


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .....+.             +.+.+.|+|||++++...
T Consensus       154 ~~~~~~~-------------~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       154 AAGPKIP-------------EALIDQLKEGGILVMPVG  178 (215)
T ss_pred             CCccccc-------------HHHHHhcCcCcEEEEEEc
Confidence            6654443             567889999999998654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.59  E-value=8.9e-15  Score=113.80  Aligned_cols=99  Identities=33%  Similarity=0.521  Sum_probs=81.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-ccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~  175 (278)
                      ..++.+|||+|||+|.++..++..|. +++|+|+++.+++.          .++.....+.... .++++||+|++..++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l   88 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVL   88 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence            46778999999999999999999887 99999999999988          1223333322232 246899999999999


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +++.       +...+++++.++|||||.+++.++...
T Consensus        89 ~~~~-------d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   89 EHLP-------DPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             GGSS-------HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             hhcc-------cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            9987       788899999999999999999998764

...

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.59  E-value=3e-14  Score=127.44  Aligned_cols=142  Identities=20%  Similarity=0.276  Sum_probs=110.0

Q ss_pred             ccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--c
Q 023703           87 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L  162 (278)
Q Consensus        87 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~  162 (278)
                      ..+++..+....++.+|||+|||+|..+..++..  +..+|+++|+++.+++.++++++..|+.++.+.++|.....  .
T Consensus       225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~  304 (431)
T PRK14903        225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV  304 (431)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence            3344444456678899999999999999998876  23489999999999999999999999878999999998764  3


Q ss_pred             CCCccEEEeCCccceeccCCCCh---------------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhc
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGP---------------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQR  227 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  227 (278)
                      .++||.|+++.+......-...+               .....++.++.+.|||||.+++++|+...++....+..|-.+
T Consensus       305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~  384 (431)
T PRK14903        305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE  384 (431)
T ss_pred             hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence            57899999987764443211111               123567899999999999999999998888877777665544


Q ss_pred             c
Q 023703          228 R  228 (278)
Q Consensus       228 ~  228 (278)
                      +
T Consensus       385 ~  385 (431)
T PRK14903        385 Q  385 (431)
T ss_pred             C
Confidence            3

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=3.8e-14  Score=112.10  Aligned_cols=110  Identities=17%  Similarity=0.216  Sum_probs=95.6

Q ss_pred             chhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCcc
Q 023703           89 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQ  167 (278)
Q Consensus        89 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD  167 (278)
                      ..+..+..+.++.+|||||||+|..+..|++.. .+|+.+|..++..+.|++|++..|+.|+.++++|...-. ...+||
T Consensus        62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD  140 (209)
T COG2518          62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYD  140 (209)
T ss_pred             HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcC
Confidence            344445566788999999999999999999984 389999999999999999999999989999999998754 458999


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .|+.......++             +.+.+.|||||++++-....
T Consensus       141 ~I~Vtaaa~~vP-------------~~Ll~QL~~gGrlv~PvG~~  172 (209)
T COG2518         141 RIIVTAAAPEVP-------------EALLDQLKPGGRLVIPVGSG  172 (209)
T ss_pred             EEEEeeccCCCC-------------HHHHHhcccCCEEEEEEccC
Confidence            999998887776             78899999999999987733

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.59  E-value=4.6e-14  Score=113.33  Aligned_cols=124  Identities=17%  Similarity=0.241  Sum_probs=91.2

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~~  173 (278)
                      ...+|||||||+|.++..++.. +..+++|+|+++.+++.|+++....++++++++++|+.+..    .++.+|.|+.+.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            3458999999999999999987 34589999999999999999998888888999999997643    235799998764


Q ss_pred             ccceecc-CCCChhhHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHHh
Q 023703          174 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  222 (278)
Q Consensus       174 ~~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~  222 (278)
                      +-.+..- |.........+++++.++|||||.+++.+.+.. .+++...+.
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~  146 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS  146 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3221110 101111124678999999999999999876554 333444443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.58  E-value=2.6e-14  Score=115.66  Aligned_cols=158  Identities=20%  Similarity=0.261  Sum_probs=117.6

Q ss_pred             cCcchhhHHhhhhc-ccccccccCccccccc--ccccchhhhcccc--CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEE
Q 023703           55 FGADVMDVVASWTK-SLCISISQGHMLNHVE--DLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGV  128 (278)
Q Consensus        55 ~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~  128 (278)
                      -..|.+++++.|.. ++.+...+|.++|+++  ..+..+++.+.+.  .++..|||+|||+|.+++.++.. +...|+++
T Consensus        99 ~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~Ai  178 (328)
T KOG2904|consen   99 KRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAI  178 (328)
T ss_pred             hcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEE
Confidence            34577888888884 4557889999999884  3444445544332  34558999999999999998886 44589999


Q ss_pred             eCChHHHHHHHHHhhhCCCcc-eEEEEccccCC----c--cCCCccEEEeCCccce---e----------------ccCC
Q 023703          129 DYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT----K--LERQFQLVMDKGTLDA---I----------------GLHP  182 (278)
Q Consensus       129 D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~----~--~~~~fD~v~~~~~~~~---~----------------~~~~  182 (278)
                      |.|+.++..|.+|++.+++.+ +.+++-++...    .  +.+++|++++|++|-.   +                ....
T Consensus       179 D~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~  258 (328)
T KOG2904|consen  179 DVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGL  258 (328)
T ss_pred             eccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhcccc
Confidence            999999999999999988765 77775554432    1  3589999999998721   0                0122


Q ss_pred             CChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          183 DGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       183 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++......++.-+.|.|+|||.+.+.....
T Consensus       259 eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  259 EGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             chhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence            445566778888999999999999987633

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.58  E-value=2.4e-14  Score=115.53  Aligned_cols=103  Identities=22%  Similarity=0.356  Sum_probs=82.6

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.     +++.+.++|+.+...+++||+|+++.+
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~~~~~sfD~V~~~~v  114 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDPFKDNFFDLVLTKGV  114 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCCCCCCCEEEEEECCh
Confidence            3346679999999999999999886 4458999999999999998864     356788899887434689999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +.|+.     +.....+++++.+++  ++.+++...
T Consensus       115 L~hl~-----p~~~~~~l~el~r~~--~~~v~i~e~  143 (204)
T TIGR03587       115 LIHIN-----PDNLPTAYRELYRCS--NRYILIAEY  143 (204)
T ss_pred             hhhCC-----HHHHHHHHHHHHhhc--CcEEEEEEe
Confidence            87763     446778889999987  456666653

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK14968 putative methyltransferase; Provisional

Probab=99.57  E-value=8.8e-14  Score=111.13  Aligned_cols=124  Identities=21%  Similarity=0.343  Sum_probs=94.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCccCCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..++..+ .+++++|+|+.+++.+++++..+++.+  +.++++|+.+...+.+||+|+++.++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~  100 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY  100 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence            467799999999999999999985 589999999999999999998877654  88999998775555689999998876


Q ss_pred             ceec--------------cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHHh
Q 023703          176 DAIG--------------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  222 (278)
Q Consensus       176 ~~~~--------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~  222 (278)
                      ....              ....+......+++++.++|||||.+++..+... .+.+...+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~  162 (188)
T PRK14968        101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLE  162 (188)
T ss_pred             CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHH
Confidence            3210              0111233456788999999999999988766543 333444333

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.57  E-value=4.8e-14  Score=122.36  Aligned_cols=118  Identities=14%  Similarity=0.060  Sum_probs=96.2

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      ....++.+|||+|||+|.++..++..+. +++|+|+++.+++.++.|++..++.++.+.++|+.+.+. +++||+|++++
T Consensus       178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dP  256 (329)
T TIGR01177       178 ARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDP  256 (329)
T ss_pred             hCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECC
Confidence            4556788999999999999998888764 899999999999999999999888778999999998765 57899999999


Q ss_pred             ccceeccC-CC-ChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          174 TLDAIGLH-PD-GPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       174 ~~~~~~~~-~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++..-... .. .......+++++.++|+|||++++..++..
T Consensus       257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~  298 (329)
T TIGR01177       257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI  298 (329)
T ss_pred             CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence            88532211 11 112356788999999999999998877653

This family is found exclusively in the Archaea.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.57  E-value=6e-14  Score=126.44  Aligned_cols=135  Identities=20%  Similarity=0.240  Sum_probs=103.3

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEE
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  170 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~  170 (278)
                      .+....++.+|||+|||+|..+..+++.  +..+|+++|+|+.+++.++++++..|+.+++++++|+.+...+++||.|+
T Consensus       244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl  323 (445)
T PRK14904        244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAIL  323 (445)
T ss_pred             HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEE
Confidence            3344567889999999999999888874  22489999999999999999999999878999999998876667899999


Q ss_pred             eCCccceecc---CCC-----Chh-------hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhc
Q 023703          171 DKGTLDAIGL---HPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQR  227 (278)
Q Consensus       171 ~~~~~~~~~~---~~~-----~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  227 (278)
                      .+.+......   +++     ...       ....++..+.++|||||++++++|+...++....+..+-..
T Consensus       324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~  395 (445)
T PRK14904        324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR  395 (445)
T ss_pred             EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence            8755432211   110     111       23468899999999999999999998877665555554443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.57  E-value=2.9e-14  Score=125.55  Aligned_cols=106  Identities=27%  Similarity=0.488  Sum_probs=88.1

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++..  ++ ++++...|..+.  +++||.|++.+.
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~  237 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGM  237 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCc
Confidence            3467889999999999999999986 54 89999999999999999874  32 478888888764  578999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++++.     ......+++++.++|||||.+++.+...
T Consensus       238 ~ehvg-----~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        238 FEHVG-----PKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             hhhCC-----hHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            87763     3355678899999999999999986543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.56  E-value=6.2e-14  Score=117.86  Aligned_cols=141  Identities=18%  Similarity=0.147  Sum_probs=104.9

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  162 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~  162 (278)
                      +...++...+....++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++++++..++.++.+++.|......
T Consensus        57 d~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~  136 (264)
T TIGR00446        57 EASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA  136 (264)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh
Confidence            333334444455678899999999999999998875 2 23799999999999999999999998789999999876542


Q ss_pred             -CCCccEEEeCCccceecc---CCC-----Ch-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          163 -ERQFQLVMDKGTLDAIGL---HPD-----GP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~~~---~~~-----~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                       .+.||.|+++.+......   ++.     ..       .....+|+.+.++|||||++++++|+...++....+..+-
T Consensus       137 ~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l  215 (264)
T TIGR00446       137 AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLL  215 (264)
T ss_pred             hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHH
Confidence             456999998876543311   111     01       1234688999999999999999999887766555544443

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.56  E-value=2.9e-14  Score=122.63  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=86.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++...   .+++++.+|+.+.+. +++||+|+++.++
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence            45679999999999999988875 335899999999999999987642   368899999988764 5789999999888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++.       +....++++.++|+|||.+++....
T Consensus       189 ~~~~-------d~~~~L~e~~rvLkPGG~LvIi~~~  217 (340)
T PLN02490        189 EYWP-------DPQRGIKEAYRVLKIGGKACLIGPV  217 (340)
T ss_pred             hhCC-------CHHHHHHHHHHhcCCCcEEEEEEec
Confidence            7664       4556789999999999999887543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.55  E-value=5.7e-14  Score=123.87  Aligned_cols=125  Identities=19%  Similarity=0.210  Sum_probs=94.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCc-----cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~-----~~~~fD~v~  170 (278)
                      .++++|||+|||+|.+++.++..|..+|+++|+|+.+++.|++|+..+++.  +++++++|+.+..     ..++||+|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            467899999999999999877777679999999999999999999999874  6899999998752     135899999


Q ss_pred             eCCccceeccC--CCChhhHHHHHHHHHhcccCCcEEEEEecCC--ChHHHHHHHh
Q 023703          171 DKGTLDAIGLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS--TKDELVHEVS  222 (278)
Q Consensus       171 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~  222 (278)
                      +++++-.-.-.  .........++..+.++|+|||.++.++|+.  +.+.+.+.+.
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~  354 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIA  354 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence            99886221100  0001134455677899999999999987764  4444555443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.55  E-value=3.5e-14  Score=117.86  Aligned_cols=106  Identities=24%  Similarity=0.215  Sum_probs=83.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..|++|||||||+|..+..++..|++.|+|+|.++-..-..+-.-...|.+. +.+...-+.+++..+.||+|++.+++.
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY  193 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY  193 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence            4788999999999999999999998899999999887666443333333222 333334555555568899999999998


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |..       +....|.+++..|+|||.+++.+.
T Consensus       194 Hrr-------~Pl~~L~~Lk~~L~~gGeLvLETl  220 (315)
T PF08003_consen  194 HRR-------SPLDHLKQLKDSLRPGGELVLETL  220 (315)
T ss_pred             ccC-------CHHHHHHHHHHhhCCCCEEEEEEe
Confidence            876       777788999999999999999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK06922 hypothetical protein; Provisional

Probab=99.55  E-value=5e-14  Score=128.50  Aligned_cols=112  Identities=16%  Similarity=0.286  Sum_probs=90.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~  173 (278)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+ .++.++++|+.+.+   .+++||+|+++.
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~fedeSFDvVVsn~  495 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSSFEKESVDTIVYSS  495 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccccCCCCEEEEEEch
Confidence            46789999999999999888875 33599999999999999999876555 36888999988764   357899999998


Q ss_pred             ccceeccC------CCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLH------PDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++++...      ..+......+++++.++|||||.+++.+.
T Consensus       496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            88765211      11235678889999999999999999864

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.54  E-value=7.5e-14  Score=114.41  Aligned_cols=104  Identities=26%  Similarity=0.329  Sum_probs=84.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+. .++.+.++|+.+.+  ++||+|++..++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l  129 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVL  129 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHH
Confidence            34678999999999999999998864 899999999999999999877664 36899999998764  789999998776


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .++.     ......+++++.+++++++.+.+.
T Consensus       130 ~~~~-----~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       130 IHYP-----ASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             HhCC-----HHHHHHHHHHHHHHhCCCEEEEEC
Confidence            5542     235567788999988876555543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.54  E-value=8.6e-14  Score=115.40  Aligned_cols=105  Identities=23%  Similarity=0.366  Sum_probs=88.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~  176 (278)
                      ++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++..    +++.++.+|+.+.+ .+++||+|+++.+++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ  109 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence            44689999999999999999884 3478999999999999988764    36889999998876 357899999998887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++.       +...++.++.++|+|||.+++.++....
T Consensus       110 ~~~-------~~~~~l~~~~~~L~~~G~l~~~~~~~~~  140 (240)
T TIGR02072       110 WCD-------DLSQALSELARVLKPGGLLAFSTFGPGT  140 (240)
T ss_pred             hcc-------CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence            764       5667889999999999999998765543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.54  E-value=9.9e-14  Score=113.10  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=84.8

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      ....++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++..++.++++..+|..+... .++||+|++..
T Consensus        74 l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~  152 (212)
T PRK00312         74 LELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA  152 (212)
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEcc
Confidence            345677899999999999999888774 4899999999999999999998888789999999866433 47899999877


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+..+.             +.+.+.|+|||.+++...
T Consensus       153 ~~~~~~-------------~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        153 AAPEIP-------------RALLEQLKEGGILVAPVG  176 (212)
T ss_pred             Cchhhh-------------HHHHHhcCCCcEEEEEEc
Confidence            654332             567889999999998765

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.54  E-value=1.3e-13  Score=123.83  Aligned_cols=135  Identities=23%  Similarity=0.313  Sum_probs=104.8

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCc
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQF  166 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~f  166 (278)
                      .....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++++..|+.++.++++|.....     ..++|
T Consensus       247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~f  326 (434)
T PRK14901        247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYF  326 (434)
T ss_pred             HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccC
Confidence            345567889999999999999999886 2 2489999999999999999999999888999999998764     24689


Q ss_pred             cEEEeCCccceecc---CCC-----Chh-------hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcc
Q 023703          167 QLVMDKGTLDAIGL---HPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRR  228 (278)
Q Consensus       167 D~v~~~~~~~~~~~---~~~-----~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  228 (278)
                      |.|+++.+......   +++     .+.       ....++.++.++|||||++++++|+-..++....+..+..++
T Consensus       327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~  403 (434)
T PRK14901        327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH  403 (434)
T ss_pred             CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence            99998766432211   111     011       135788999999999999999999888777777666655443

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.53  E-value=1.6e-13  Score=123.77  Aligned_cols=132  Identities=19%  Similarity=0.291  Sum_probs=100.4

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEE
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLV  169 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v  169 (278)
                      .....++.+|||+|||+|..+..++..  +..+|+++|+++.+++.++++++..|+.++.++++|+.+..  ..++||+|
T Consensus       245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~V  324 (444)
T PRK14902        245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKI  324 (444)
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEE
Confidence            344567889999999999999999885  23589999999999999999999999878999999998753  24789999


Q ss_pred             EeCCccceecc---CCC-----Chh-------hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          170 MDKGTLDAIGL---HPD-----GPL-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       170 ~~~~~~~~~~~---~~~-----~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                      +++++......   ++.     ...       ....++..+.++|||||.++++++....++....+..+.
T Consensus       325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l  395 (444)
T PRK14902        325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL  395 (444)
T ss_pred             EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence            99876432211   110     011       124678999999999999999988876665554444433

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.53  E-value=6.8e-14  Score=108.81  Aligned_cols=107  Identities=19%  Similarity=0.274  Sum_probs=87.9

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceE-EEEccccCCc--cCCCccEEEeCCccce
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVDDVLDTK--LERQFQLVMDKGTLDA  177 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~-~~~~d~~~~~--~~~~fD~v~~~~~~~~  177 (278)
                      ..||++|||||..-...-..+..+|+++|.++.|-+.+.+.++.+.-.++. |++++..+++  .+++||.|++.-++..
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS  157 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS  157 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence            468999999998877766554458999999999999999998887555665 9999999987  5899999999766654


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +.       +..+.|++++++|+|||++++..-....
T Consensus       158 ve-------~~~k~L~e~~rlLRpgG~iifiEHva~~  187 (252)
T KOG4300|consen  158 VE-------DPVKQLNEVRRLLRPGGRIIFIEHVAGE  187 (252)
T ss_pred             cC-------CHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            43       7777889999999999999987654443

>PRK08317 hypothetical protein; Provisional

Probab=99.53  E-value=1.8e-13  Score=113.44  Aligned_cols=107  Identities=23%  Similarity=0.362  Sum_probs=88.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      ..++.+|||+|||+|.++..++...  ..+++++|+|+.+++.++++..... .++.+...|+...+. +++||+|++..
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-PNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-CceEEEecccccCCCCCCCceEEEEec
Confidence            3567899999999999999998862  3589999999999999998833322 468999999887553 57899999998


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++++.       +...+++++.++|+|||.+++..+.
T Consensus        96 ~~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         96 VLQHLE-------DPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             hhhccC-------CHHHHHHHHHHHhcCCcEEEEEecC
Confidence            888775       6677889999999999999987653

>PLN03075 nicotianamine synthase; Provisional

Probab=99.52  E-value=3.7e-13  Score=112.92  Aligned_cols=106  Identities=22%  Similarity=0.314  Sum_probs=82.8

Q ss_pred             CCCeEEEEecCCCHHHHH-Hh-hC-CCCcEEEEeCChHHHHHHHHHhhh-CCCcc-eEEEEccccCCcc-CCCccEEEeC
Q 023703           99 SSWSVLDIGTGNGLLLQE-LS-KQ-GFSDLTGVDYSEDAINLAQSLANR-DGFSC-IKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~-l~-~~-~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~-~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ++++|+|||||.|.++.. ++ .. +..+++++|+++.+++.|++.+.. .++.+ ++|..+|+.+... .++||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            678999999998855443 33 23 334899999999999999999964 66654 9999999988643 4789999997


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                       ++..+     ...+...+++++.+.|+|||.+++...
T Consensus       203 -ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        203 -ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             -ccccc-----ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence             43322     123667888999999999999999874

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.52  E-value=2.2e-13  Score=122.19  Aligned_cols=133  Identities=19%  Similarity=0.261  Sum_probs=101.4

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEE
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLV  169 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v  169 (278)
                      .....++.+|||+|||+|..+..++.... .+|+++|+++.+++.++++++..|+ ++.++++|+.+..   ..++||.|
T Consensus       239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~V  317 (427)
T PRK10901        239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRI  317 (427)
T ss_pred             HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEE
Confidence            34556889999999999999999998732 4899999999999999999999886 4789999998653   24679999


Q ss_pred             EeCCccceecc---CC-----CCh-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhc
Q 023703          170 MDKGTLDAIGL---HP-----DGP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQR  227 (278)
Q Consensus       170 ~~~~~~~~~~~---~~-----~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  227 (278)
                      +++++......   ++     ...       .....++..+.++|||||.+++++|+....+....+..+..+
T Consensus       318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~  390 (427)
T PRK10901        318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR  390 (427)
T ss_pred             EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence            98887543210   11     011       123478899999999999999999877776666655554443

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.52  E-value=1.5e-13  Score=110.02  Aligned_cols=114  Identities=11%  Similarity=-0.052  Sum_probs=86.5

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCcc
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQ  167 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD  167 (278)
                      ++..+....++.+|||+|||+|.+++.++.+++.+|+++|.++.+++.+++|++.+++.++.++++|+.+..  ..++||
T Consensus        44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fD  123 (199)
T PRK10909         44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHN  123 (199)
T ss_pred             HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCce
Confidence            444444435678999999999999997666666799999999999999999999998878999999997642  235699


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHh--cccCCcEEEEEecC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSK--LVAPGGLLVITSCN  211 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~  211 (278)
                      +|+++++|..-        .....++.+..  +|+|+|++++....
T Consensus       124 lV~~DPPy~~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        124 VVFVDPPFRKG--------LLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             EEEECCCCCCC--------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            99999996321        12223344443  47999988888654

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.52  E-value=2.1e-13  Score=112.86  Aligned_cols=108  Identities=30%  Similarity=0.462  Sum_probs=90.4

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~  174 (278)
                      ..++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+. ++.+...|..+..  ..++||+|++..+
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~  123 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEM  123 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence            35678999999999999999998864 799999999999999998877664 5788888887654  3578999999888


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +.++.       +...+++.+.++|+|||.+++..++..
T Consensus       124 l~~~~-------~~~~~l~~~~~~L~~gG~l~v~~~~~~  155 (233)
T PRK05134        124 LEHVP-------DPASFVRACAKLVKPGGLVFFSTLNRN  155 (233)
T ss_pred             hhccC-------CHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence            77664       556678999999999999999876544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.51  E-value=2.3e-13  Score=109.69  Aligned_cols=105  Identities=25%  Similarity=0.323  Sum_probs=84.8

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc--cCCCccEEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      ...++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++++.+++ .++.++.+|..+..  ..++||.|+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~  116 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF  116 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence            4567889999999999999998764 2 34899999999999999999998884 57899999987642  246899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +....          .....+++.+.++|+|||++++...
T Consensus       117 ~~~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        117 IGGGS----------EKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             ECCCc----------ccHHHHHHHHHHHcCCCcEEEEEee
Confidence            85422          1445677999999999999988654

>PLN02672 methionine S-methyltransferase

Probab=99.51  E-value=2.3e-13  Score=131.42  Aligned_cols=184  Identities=12%  Similarity=0.106  Sum_probs=126.1

Q ss_pred             hhhcccccccccCcccccccccccchhhhcccc----CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHH
Q 023703           65 SWTKSLCISISQGHMLNHVEDLKSEPVEENDKY----LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQ  139 (278)
Q Consensus        65 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~  139 (278)
                      +|...+  .+.++.++|+. +++. +++.+...    .++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+
T Consensus        84 F~~l~~--~V~p~VLIPRp-eTE~-lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~  159 (1082)
T PLN02672         84 RKKLTM--MEIPSIFIPED-WSFT-FYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW  159 (1082)
T ss_pred             ecCCce--eeCCCcccCch-hHHH-HHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            444444  67888888875 2222 22222211    13468999999999999999987 3358999999999999999


Q ss_pred             HHhhhCCC----------------cceEEEEccccCCccC--CCccEEEeCCccce------------------------
Q 023703          140 SLANRDGF----------------SCIKFLVDDVLDTKLE--RQFQLVMDKGTLDA------------------------  177 (278)
Q Consensus       140 ~~~~~~~~----------------~~~~~~~~d~~~~~~~--~~fD~v~~~~~~~~------------------------  177 (278)
                      +|++.+++                .+++++++|+.+....  .+||+|++|+++-.                        
T Consensus       160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~  239 (1082)
T PLN02672        160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLS  239 (1082)
T ss_pred             HHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccC
Confidence            99987643                2589999999875432  37999999998621                        


Q ss_pred             --ecc-----CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHH-HHHhhhh-------hcccccc---cchhhhc
Q 023703          178 --IGL-----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV-HEVSNLS-------QRRIGVS---QEHEIKD  239 (278)
Q Consensus       178 --~~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~---~~~~~~~  239 (278)
                        ..+     +.++..-...++.++.++|+|||.+++.....+.+... ..+....       ..++.-.   +...+..
T Consensus       240 p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~~~~~~~~~~~~~~~~  319 (1082)
T PLN02672        240 NYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQTKINQAADTDISALVE  319 (1082)
T ss_pred             ccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeeehhhhccccchHHHHH
Confidence              000     13444455778889999999999999998888777766 3554322       1111111   2223366


Q ss_pred             ccccCCCCceeee
Q 023703          240 EEACREPPFRYLN  252 (278)
Q Consensus       240 ~~~~~~~~~~~~~  252 (278)
                      ++..+++.|+++-
T Consensus       320 ~~~~~~~~~~~~~  332 (1082)
T PLN02672        320 IEKNSRHRFEFFM  332 (1082)
T ss_pred             HhhcCccceeeee
Confidence            7777888888874

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.51  E-value=2.3e-13  Score=109.61  Aligned_cols=106  Identities=20%  Similarity=0.243  Sum_probs=82.5

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++++..++.+++++.+|+.+..  ....+|.++..
T Consensus        37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~  116 (196)
T PRK07402         37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE  116 (196)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence            4457789999999999999998865 23589999999999999999999888777999999986521  12335655432


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .           ......+++++.++|+|||.+++...+.
T Consensus       117 ~-----------~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        117 G-----------GRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             C-----------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence            1           1134567799999999999999987654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.51  E-value=3.5e-13  Score=111.77  Aligned_cols=108  Identities=22%  Similarity=0.322  Sum_probs=88.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ++.+|||+|||+|.++..++..+  ..+++++|+++.+++.+++++...+. .++.+..+|+.+.+. .++||+|++...
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            56799999999999999998875  36899999999999999999876543 358999999987654 478999998777


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++++.       +...+++.+.++|+|||.+++.+...+
T Consensus       131 l~~~~-------~~~~~l~~~~~~L~~gG~li~~~~~~~  162 (239)
T PRK00216        131 LRNVP-------DIDKALREMYRVLKPGGRLVILEFSKP  162 (239)
T ss_pred             cccCC-------CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence            66554       566778999999999999988765443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.50  E-value=3.3e-13  Score=110.92  Aligned_cols=108  Identities=30%  Similarity=0.497  Sum_probs=91.2

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~  176 (278)
                      ++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+..++.+...|+.+...  +++||+|++...++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            467999999999999999988865 799999999999999999887765468888898876643  37899999988887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++.       +...+++.+.++|+|||.+++...+.+.
T Consensus       124 ~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~~~  154 (224)
T TIGR01983       124 HVP-------DPQAFIRACAQLLKPGGILFFSTINRTP  154 (224)
T ss_pred             hCC-------CHHHHHHHHHHhcCCCcEEEEEecCCCc
Confidence            765       5667889999999999999998776543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.50  E-value=1.8e-13  Score=129.51  Aligned_cols=142  Identities=17%  Similarity=0.147  Sum_probs=104.3

Q ss_pred             ccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ce
Q 023703           73 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CI  150 (278)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~  150 (278)
                      ...+|.+.++...     ...+....++++|||+|||+|.+++.++..|..+|+++|+|+.+++.|++|++.+++.  ++
T Consensus       517 ~~~tG~flDqr~~-----R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v  591 (702)
T PRK11783        517 YLDTGLFLDHRPT-----RRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQH  591 (702)
T ss_pred             CCcceECHHHHHH-----HHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccce
Confidence            3445556554321     1223333467899999999999999999988768999999999999999999999885  59


Q ss_pred             EEEEccccCCc--cCCCccEEEeCCccceeccC----CCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          151 KFLVDDVLDTK--LERQFQLVMDKGTLDAIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       151 ~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      +++++|+.+..  ..++||+|++++++-.-.-.    .........++..+.++|+|||.++++++.........
T Consensus       592 ~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~  666 (702)
T PRK11783        592 RLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEE  666 (702)
T ss_pred             EEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHH
Confidence            99999997643  25689999999876321100    01123445677889999999999999887665544333

>PRK04266 fibrillarin; Provisional

Probab=99.50  E-value=6.8e-13  Score=108.53  Aligned_cols=103  Identities=14%  Similarity=0.198  Sum_probs=79.8

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC----ccCCCccEE
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLV  169 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~fD~v  169 (278)
                      ..+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+.++++..  .++.++.+|....    ...++||+|
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i  145 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVI  145 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEE
Confidence            34568889999999999999999987 3238999999999999887776544  5789999998753    124569998


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ++...         .+.....+++++.++|||||.++++
T Consensus       146 ~~d~~---------~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        146 YQDVA---------QPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             EECCC---------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            86422         1223345679999999999999994

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.50  E-value=1.3e-13  Score=115.68  Aligned_cols=107  Identities=15%  Similarity=0.213  Sum_probs=82.6

Q ss_pred             CCCeEEEEecCCCH----HHHHHhhCC------CCcEEEEeCChHHHHHHHHHhhh----CC------------------
Q 023703           99 SSWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQSLANR----DG------------------  146 (278)
Q Consensus        99 ~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~~~D~s~~~i~~a~~~~~~----~~------------------  146 (278)
                      ++.+|+|+|||+|.    +++.+++..      ..+|+|+|+|+.+++.|++....    .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    455555531      13799999999999999986410    00                  


Q ss_pred             ----C-cceEEEEccccCCcc-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          147 ----F-SCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       147 ----~-~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                          + .++.|.+.|+.+.++ .++||+|+|..++.++.     ......+++++.++|+|||.+++...
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-----~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-----EPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-----HHHHHHHHHHHHHHhCCCeEEEEECc
Confidence                1 258999999998765 68899999988886663     34667888999999999999998643

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.50  E-value=4.4e-13  Score=120.28  Aligned_cols=138  Identities=19%  Similarity=0.222  Sum_probs=101.2

Q ss_pred             hhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc---cCCC
Q 023703           91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK---LERQ  165 (278)
Q Consensus        91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~---~~~~  165 (278)
                      +.......++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++..|+. .+.+..+|.....   ..++
T Consensus       230 ~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~  309 (426)
T TIGR00563       230 VATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ  309 (426)
T ss_pred             HHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence            333445567899999999999999999886 3348999999999999999999998875 1334667766543   2567


Q ss_pred             ccEEEeCCccceecc---CCC-----Ch-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhhcc
Q 023703          166 FQLVMDKGTLDAIGL---HPD-----GP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRR  228 (278)
Q Consensus       166 fD~v~~~~~~~~~~~---~~~-----~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  228 (278)
                      ||.|+++.+......   ++.     .+       .....+|.++.++|||||.+++++|+...++....+..+-.++
T Consensus       310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~  387 (426)
T TIGR00563       310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH  387 (426)
T ss_pred             cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence            999998766543321   111     11       1135788999999999999999999987766666665554433

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.50  E-value=4.1e-13  Score=104.04  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=91.7

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCC-CccEEEe
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER-QFQLVMD  171 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~fD~v~~  171 (278)
                      ...+.++.+++|||||||..++.++..+ ..+|+++|-++++++..++|+.+.+++|+.++.+|+.+...+. ++|.|+.
T Consensus        29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFI  108 (187)
T COG2242          29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFI  108 (187)
T ss_pred             hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEE
Confidence            3556788999999999999999999553 3499999999999999999999999999999999998764432 7999998


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .+. -          ....+++.+...|||||++++.....
T Consensus       109 GGg-~----------~i~~ile~~~~~l~~ggrlV~naitl  138 (187)
T COG2242         109 GGG-G----------NIEEILEAAWERLKPGGRLVANAITL  138 (187)
T ss_pred             CCC-C----------CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence            776 2          55667799999999999999976543

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.49  E-value=8.8e-14  Score=110.88  Aligned_cols=152  Identities=22%  Similarity=0.295  Sum_probs=108.6

Q ss_pred             cCcHHHHHHHHHHHhhchhccCCccccccCcchhhHHhhhhcccccccccCcccccccccccchhhhccccCCCCeEEEE
Q 023703           27 LGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDI  106 (278)
Q Consensus        27 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDi  106 (278)
                      .....|||.+|.....+|.    ..++|......+.    .                        .. .. ....+||++
T Consensus        33 ~~~~k~wD~fy~~~~~rFf----kdR~wL~~Efpel----~------------------------~~-~~-~~~~~ilEv   78 (264)
T KOG2361|consen   33 REASKYWDTFYKIHENRFF----KDRNWLLREFPEL----L------------------------PV-DE-KSAETILEV   78 (264)
T ss_pred             cchhhhhhhhhhhcccccc----chhHHHHHhhHHh----h------------------------Cc-cc-cChhhheee
Confidence            3456799999999887764    4455553331111    0                        00 00 122389999


Q ss_pred             ecCCCHHHHHHhhCCC---CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEEeCCcccee
Q 023703          107 GTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDKGTLDAI  178 (278)
Q Consensus       107 GcG~G~~~~~l~~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~~~~~~~~~  178 (278)
                      |||.|.....+.+...   -.|+++|.||.+++..+++..... .++...+.|+....     ..+++|++++.-++.++
T Consensus        79 GCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi  157 (264)
T KOG2361|consen   79 GCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI  157 (264)
T ss_pred             ccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEecc
Confidence            9999999998888632   279999999999999999876553 35666677776543     35789999987777666


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHH
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  218 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  218 (278)
                      .     ++.....+.++.++|||||.+++.+.....-..+
T Consensus       158 ~-----pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql  192 (264)
T KOG2361|consen  158 H-----PEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL  192 (264)
T ss_pred             C-----hHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH
Confidence            4     6677788899999999999999998766554433

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.49  E-value=1.5e-13  Score=119.71  Aligned_cols=136  Identities=23%  Similarity=0.291  Sum_probs=106.0

Q ss_pred             cccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--c
Q 023703           72 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--C  149 (278)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~  149 (278)
                      ..+.+|.+.++...     ...+.....|++|||+.|-||.++++.+..|+++|++||.|..+++.|++|++.+|++  .
T Consensus       195 ~g~kTGfFlDqR~~-----R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~  269 (393)
T COG1092         195 DGLKTGFFLDQRDN-----RRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDR  269 (393)
T ss_pred             CcccceeeHHhHHH-----HHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence            45667777765422     2233344458999999999999999999999889999999999999999999999985  3


Q ss_pred             eEEEEccccCCcc-----CCCccEEEeCCccceeccC----CCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          150 IKFLVDDVLDTKL-----ERQFQLVMDKGTLDAIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       150 ~~~~~~d~~~~~~-----~~~fD~v~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +.++++|++++-.     ..+||+|+.+++-  +.-.    .....+...++..+.++|+|||+++++++....
T Consensus       270 ~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPs--F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~  341 (393)
T COG1092         270 HRFIVGDVFKWLRKAERRGEKFDLIILDPPS--FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF  341 (393)
T ss_pred             eeeehhhHHHHHHHHHhcCCcccEEEECCcc--cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence            8899999998632     3589999988763  2111    122345567889999999999999999876654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.49  E-value=4.9e-13  Score=109.69  Aligned_cols=106  Identities=25%  Similarity=0.342  Sum_probs=87.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      ++.+|||+|||+|.++..+++...  .+++++|+++.+++.++++..  ...++.+..+|+.+.+. +++||+|+++..+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~  116 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL  116 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence            677999999999999999988843  389999999999999999875  22468999999988654 4689999987776


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +++.       +...+++++.++|+|||++++.+....
T Consensus       117 ~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~~  147 (223)
T TIGR01934       117 RNVT-------DIQKALREMYRVLKPGGRLVILEFSKP  147 (223)
T ss_pred             CCcc-------cHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            5543       566788999999999999998765443

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.48  E-value=2.7e-13  Score=109.26  Aligned_cols=103  Identities=22%  Similarity=0.297  Sum_probs=82.9

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  172 (278)
                      .+.++.+|||||||+|..+..++.. +. ..|+++|..+..++.|++++...+..++.++++|..... ...+||.|+..
T Consensus        69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~  148 (209)
T PF01135_consen   69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVT  148 (209)
T ss_dssp             TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEES
T ss_pred             hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEe
Confidence            3778999999999999999999886 32 269999999999999999999999889999999987643 35789999998


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .....++             ..+.+.|++||++++....
T Consensus       149 ~a~~~ip-------------~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  149 AAVPEIP-------------EALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             SBBSS---------------HHHHHTEEEEEEEEEEESS
T ss_pred             eccchHH-------------HHHHHhcCCCcEEEEEEcc
Confidence            8776665             6788899999999997654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.47  E-value=2.1e-13  Score=114.41  Aligned_cols=136  Identities=22%  Similarity=0.264  Sum_probs=96.9

Q ss_pred             cccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--c
Q 023703           72 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--C  149 (278)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~  149 (278)
                      ....+|.++++++.+     ..+....++++|||+.|-||.++...+..|+.+|+.+|.|..+++.+++|+..++++  .
T Consensus       101 ~gqktGlFlDqR~nR-----~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~  175 (286)
T PF10672_consen  101 DGQKTGLFLDQRENR-----KWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDR  175 (286)
T ss_dssp             SSSSTSS-GGGHHHH-----HHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred             CCCcceEcHHHHhhH-----HHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence            456778888766433     122333568899999999999999999988889999999999999999999999874  5


Q ss_pred             eEEEEccccCCc----cCCCccEEEeCCccceeccCCCC-hhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          150 IKFLVDDVLDTK----LERQFQLVMDKGTLDAIGLHPDG-PLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       150 ~~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +++++.|+.+..    ..++||+|+++++-  +.-.... ..+...++..+.++|+|||.++++++++..
T Consensus       176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPs--F~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i  243 (286)
T PF10672_consen  176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPS--FAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHI  243 (286)
T ss_dssp             EEEEES-HHHHHHHHHHTT-EEEEEE--SS--EESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred             eEEEecCHHHHHHHHhcCCCCCEEEECCCC--CCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999998742    25789999998773  2211111 234567789999999999999988876544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.46  E-value=1.5e-12  Score=111.35  Aligned_cols=101  Identities=20%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-----CcceEEEEccccCCccCCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++...+     ..++.+...|+.+.  +++||+|++..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence            577999999999999999999875 89999999999999999987642     23578888998653  57899999988


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ++.|+.     ......+++.+.+ +.+||.++..
T Consensus       221 vL~H~p-----~~~~~~ll~~l~~-l~~g~liIs~  249 (315)
T PLN02585        221 VLIHYP-----QDKADGMIAHLAS-LAEKRLIISF  249 (315)
T ss_pred             EEEecC-----HHHHHHHHHHHHh-hcCCEEEEEe
Confidence            876543     1233445566664 4566654433

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.46  E-value=8.6e-13  Score=114.72  Aligned_cols=115  Identities=11%  Similarity=0.074  Sum_probs=89.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC---ccCCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~v~~~~~  174 (278)
                      .+..+||||||+|.++..+|.. +...++|+|+++.+++.|.+++...+++|+.++++|+...   ..++++|.|+.+.+
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            4558999999999999999987 3358999999999999999999999988999999998653   24678999997644


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ..+..-.+ .......+++.+.++|+|||.+.+.+-...-
T Consensus       202 dPW~KkrH-RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y  240 (390)
T PRK14121        202 VPWDKKPH-RRVISEDFLNEALRVLKPGGTLELRTDSELY  240 (390)
T ss_pred             CCccccch-hhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence            32211000 1112257889999999999999998765543

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.46  E-value=6.9e-13  Score=112.19  Aligned_cols=97  Identities=22%  Similarity=0.377  Sum_probs=76.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-C---CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-G---FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      +..+|||+|||+|.++..++.. +   ...++|+|+|+.+++.|+++.     +++.+.++|+.+.++ +++||+|++..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~  159 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIY  159 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEec
Confidence            4468999999999999988865 1   136999999999999998753     468899999988765 57899999743


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      .       +       ..++++.++|||||.+++.+++...
T Consensus       160 ~-------~-------~~~~e~~rvLkpgG~li~~~p~~~~  186 (272)
T PRK11088        160 A-------P-------CKAEELARVVKPGGIVITVTPGPRH  186 (272)
T ss_pred             C-------C-------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence            2       1       1137899999999999998876543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.46  E-value=1e-12  Score=113.17  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=87.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ...++.+|||||||+|.++..++++ +..+++++|. +.+++.+++++...++. +++++.+|+.+...+ .+|+|+...
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~  223 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR  223 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence            3456789999999999999999988 3348999997 78999999999888774 599999999865443 379998766


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++..     +......+++++.++|+|||++++.+.
T Consensus       224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            65433     234556788999999999999999864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PHA03412 putative methyltransferase; Provisional

Probab=99.44  E-value=7.4e-13  Score=107.10  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=78.7

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC----CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      .+.+|||+|||+|.++..++..    +..+|+++|+++.+++.|+++.     .++.++++|+.....+++||+|++|++
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP  123 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP  123 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence            3679999999999999988864    2348999999999999999875     357899999987666679999999999


Q ss_pred             cceeccC-----CCChhhHHHHHHHHHhcccCCcE
Q 023703          175 LDAIGLH-----PDGPLKRIMYWDSVSKLVAPGGL  204 (278)
Q Consensus       175 ~~~~~~~-----~~~~~~~~~~l~~~~~~LkpgG~  204 (278)
                      |..+...     +.+......+++.+.+++++|+.
T Consensus       124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            9654321     11223455688888886666664

>PHA03411 putative methyltransferase; Provisional

Probab=99.44  E-value=9.7e-13  Score=108.83  Aligned_cols=106  Identities=15%  Similarity=0.218  Sum_probs=83.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ...+|||+|||+|.++..++.+ +..+|+++|+++.+++.+++++     +++.++++|+.+...+.+||+|+++++|.+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~  138 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGK  138 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence            4569999999999999988775 2358999999999999999864     368899999998766678999999999976


Q ss_pred             eccCCCCh-----------h--hHHHHHHHHHhcccCCcEEEEEe
Q 023703          178 IGLHPDGP-----------L--KRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       178 ~~~~~~~~-----------~--~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ........           .  ....++.....+|+|+|.+++..
T Consensus       139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence            53211000           0  13567788899999999887763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.44  E-value=9e-13  Score=120.22  Aligned_cols=104  Identities=21%  Similarity=0.357  Sum_probs=84.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--c-cCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--K-LERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--~-~~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++...  ..+++.++++|+...  + ++++||+|+++.+
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~  112 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWL  112 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence            356799999999999999999985 589999999999998765332  225789999999642  3 3578999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++++.     ......+++++.++|||||++++.+
T Consensus       113 l~~l~-----~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        113 LMYLS-----DKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             HHhCC-----HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            87664     3346788899999999999999864

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.44  E-value=9.6e-13  Score=108.52  Aligned_cols=112  Identities=18%  Similarity=0.286  Sum_probs=89.6

Q ss_pred             cchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc--
Q 023703           88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--  162 (278)
Q Consensus        88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~--  162 (278)
                      ..++..+....++++|||+|||+|..++.++..  +..+|+++|+++.+++.|+++++..++. +++++.+|+.+...  
T Consensus        57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL  136 (234)
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence            445566666677889999999999988888765  2358999999999999999999999885 49999999977421  


Q ss_pred             -----CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          163 -----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 -----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                           .++||+|+.+..-          .....++..+.+.|+|||.+++..
T Consensus       137 ~~~~~~~~fD~VfiDa~k----------~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        137 LNNDPKPEFDFAFVDADK----------PNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             HhCCCCCCCCEEEECCCH----------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence                 3689999875431          244567799999999999998864

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.43  E-value=1.9e-12  Score=105.05  Aligned_cols=113  Identities=24%  Similarity=0.300  Sum_probs=80.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cCCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQF  166 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~f  166 (278)
                      .++.+|||+|||+|.++..+++. +. ..|+|+|+++.           ...+++.++++|+.+..         .+++|
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~  118 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV  118 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence            56789999999999999999887 22 38999999981           12356899999998852         25789


Q ss_pred             cEEEeCCccceeccCCC-Ch----hhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHHHh
Q 023703          167 QLVMDKGTLDAIGLHPD-GP----LKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS  222 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~  222 (278)
                      |+|+++....... .+. +.    .....+++.+.++|+|||.+++..... ...+++..+.
T Consensus       119 D~V~S~~~~~~~g-~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~  179 (209)
T PRK11188        119 QVVMSDMAPNMSG-TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR  179 (209)
T ss_pred             CEEecCCCCccCC-ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH
Confidence            9999976543321 110 00    012467899999999999999976544 3345554443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.43  E-value=2.8e-12  Score=91.37  Aligned_cols=101  Identities=28%  Similarity=0.420  Sum_probs=83.3

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCccceec
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~  179 (278)
                      +|+|+|||+|.++..++..+..+++++|+++.+++.+++.....+..++.+...|..+..  ..++||+|+++.+++++ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence            489999999999999988544699999999999999986544444456899999998875  35789999999888663 


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                           ......+++.+.+.|+|||.+++.
T Consensus        80 -----~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -----VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence                 236677889999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.42  E-value=2.7e-12  Score=105.92  Aligned_cols=99  Identities=23%  Similarity=0.276  Sum_probs=78.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+. .++.+..+|+..  .+++||+|++..++.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~  138 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLI  138 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhh
Confidence            4677999999999999999999875 799999999999999999887765 368999999532  357899999988875


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcE
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGL  204 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~  204 (278)
                      ++.     ......+++.+.+.+++++.
T Consensus       139 ~~~-----~~~~~~~l~~l~~~~~~~~~  161 (230)
T PRK07580        139 HYP-----QEDAARMLAHLASLTRGSLI  161 (230)
T ss_pred             cCC-----HHHHHHHHHHHHhhcCCeEE
Confidence            542     23456677888887654443

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.41  E-value=2.3e-12  Score=102.74  Aligned_cols=121  Identities=11%  Similarity=-0.014  Sum_probs=89.2

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--  161 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--  161 (278)
                      .....+...+....++.+|||++||+|.+++.++.+|+++|+++|.++.+++.+++|++.+++. +++++++|+.+..  
T Consensus        35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~  114 (189)
T TIGR00095        35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF  114 (189)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH
Confidence            3333444444444578899999999999999999998779999999999999999999998875 5899999996531  


Q ss_pred             c--C-CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          162 L--E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       162 ~--~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .  . ..||+|+.+++|..-.     .......+.+ ..+|+++|.+++....
T Consensus       115 ~~~~~~~~dvv~~DPPy~~~~-----~~~~l~~l~~-~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       115 LAKKPTFDNVIYLDPPFFNGA-----LQALLELCEN-NWILEDTVLIVVEEDR  161 (189)
T ss_pred             hhccCCCceEEEECcCCCCCc-----HHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence            1  2 2489999999885311     1122222222 3578999988887654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.41  E-value=5.2e-13  Score=105.63  Aligned_cols=128  Identities=16%  Similarity=0.187  Sum_probs=95.2

Q ss_pred             cccccccccccchhhhcccc-CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc
Q 023703           78 HMLNHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD  155 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~  155 (278)
                      ...|+.+.....+...+... .++.++||+.||||.+++..+.+|+++|+.+|.++.++...++|++..+..+ +.++..
T Consensus        20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~   99 (183)
T PF03602_consen   20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG   99 (183)
T ss_dssp             TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred             CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence            44555556666666666666 6889999999999999999999999999999999999999999999988765 889999


Q ss_pred             cccCCc-----cCCCccEEEeCCccceeccCCCChhhHHHHHHHHH--hcccCCcEEEEEecCC
Q 023703          156 DVLDTK-----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNS  212 (278)
Q Consensus       156 d~~~~~-----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~  212 (278)
                      |.....     ...+||+|+.+++|..-.       ....+++.+.  .+|+++|.+++.....
T Consensus       100 d~~~~l~~~~~~~~~fDiIflDPPY~~~~-------~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  100 DAFKFLLKLAKKGEKFDIIFLDPPYAKGL-------YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             SHHHHHHHHHHCTS-EEEEEE--STTSCH-------HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CHHHHHHhhcccCCCceEEEECCCcccch-------HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            976532     257899999999986432       1345556665  7999999999987655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.40  E-value=2.7e-12  Score=110.05  Aligned_cols=101  Identities=18%  Similarity=0.242  Sum_probs=81.5

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-C-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|.++..+++.. . ..|+++|+++.+++.|+++++..+.+++.++.+|..+... .++||+|++.
T Consensus        77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~  156 (322)
T PRK13943         77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT  156 (322)
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence            34577899999999999999998862 1 2699999999999999999998888789999999876543 3679999986


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .....++             ..+.+.|+|||++++..
T Consensus       157 ~g~~~ip-------------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        157 VGVDEVP-------------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             CchHHhH-------------HHHHHhcCCCCEEEEEe
Confidence            5443322             45778999999988864

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.40  E-value=3e-12  Score=108.53  Aligned_cols=132  Identities=18%  Similarity=0.160  Sum_probs=104.8

Q ss_pred             cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-cccCCcc
Q 023703           84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKL  162 (278)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~~~~~  162 (278)
                      .+..+..+-.+.+..+|..|||..||||.+++.+.-.|. +++|+|++..|++-|+.|++..+++...+... |+...++
T Consensus       182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl  260 (347)
T COG1041         182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL  260 (347)
T ss_pred             CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence            344444555667778999999999999999999999986 89999999999999999999998877666555 9999887


Q ss_pred             CC-CccEEEeCCccceecc-CCCC-hhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          163 ER-QFQLVMDKGTLDAIGL-HPDG-PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       163 ~~-~fD~v~~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      ++ ++|.|++.+++..-.. .... ..-...+++.+.++|++||.+++..+-.+..+
T Consensus       261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~  317 (347)
T COG1041         261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE  317 (347)
T ss_pred             CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh
Confidence            65 4999999999864431 1222 23356888999999999999999988444433

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.40  E-value=9.2e-12  Score=107.45  Aligned_cols=111  Identities=22%  Similarity=0.187  Sum_probs=84.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~  176 (278)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++++.+++.+++++++|+.+..  ..++||+|+.+++-.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~  251 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR  251 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence            56899999999999999999986 589999999999999999999999878999999997753  235799999987743


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  220 (278)
                      .+.         ..+ .++...++|+++++++....+.......
T Consensus       252 G~~---------~~~-~~~l~~~~~~~ivyvsc~p~t~~rd~~~  285 (315)
T PRK03522        252 GIG---------KEL-CDYLSQMAPRFILYSSCNAQTMAKDLAH  285 (315)
T ss_pred             Ccc---------HHH-HHHHHHcCCCeEEEEECCcccchhHHhh
Confidence            221         111 2223336788777776655555544443

>PRK04457 spermidine synthase; Provisional

Probab=99.40  E-value=1.9e-12  Score=108.57  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=85.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc--cCCCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~--~~~~fD~v~~~  172 (278)
                      ..++.+|||||||+|.++..++.. +..+++++|+++.+++.|++++...+. ++++++.+|..+..  .+++||+|+.+
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            345679999999999999998876 445899999999999999999865543 56999999987642  24689999975


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      . ++..  ..+.......+++.+.+.|+|||++++....
T Consensus       144 ~-~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        144 G-FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             C-CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            3 2211  1112223467889999999999999986443

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=2e-11  Score=94.33  Aligned_cols=84  Identities=27%  Similarity=0.368  Sum_probs=73.4

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      .....+++|+|+|||||.+++..+..|+.+|+|+|+++++++.+++|....+ .++.|..+|+.+.  ..++|.++.|++
T Consensus        41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~--~~~~dtvimNPP  117 (198)
T COG2263          41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF--RGKFDTVIMNPP  117 (198)
T ss_pred             cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhc--CCccceEEECCC
Confidence            3446788999999999999999999998899999999999999999998844 5799999999874  577999999999


Q ss_pred             cceeccC
Q 023703          175 LDAIGLH  181 (278)
Q Consensus       175 ~~~~~~~  181 (278)
                      |....-|
T Consensus       118 FG~~~rh  124 (198)
T COG2263         118 FGSQRRH  124 (198)
T ss_pred             Ccccccc
Confidence            9766434

>TIGR03438 probable methyltransferase

Probab=99.39  E-value=5e-12  Score=108.34  Aligned_cols=107  Identities=17%  Similarity=0.223  Sum_probs=79.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCC-ccCCCc----c-E
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDT-KLERQF----Q-L  168 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~-~~~~~f----D-~  168 (278)
                      .++.+|||+|||+|..+..+++..  ..+|+++|+|+.|++.+++++.... --++.++++|+.+. .....+    + +
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            456799999999999999998873  2489999999999999999876532 11467789999873 232222    2 3


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++..++.++     .+.+...++++++++|+|||.+++..
T Consensus       142 ~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       142 FFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            3333344333     35677889999999999999999864

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.39  E-value=1.3e-11  Score=111.26  Aligned_cols=113  Identities=18%  Similarity=0.215  Sum_probs=86.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----c-CCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~-~~~fD~v~~  171 (278)
                      ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++|++.+++++++++++|+.+..    . +++||+|++
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~  373 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL  373 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence            3567899999999999999999885 589999999999999999999988888999999997532    1 357999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      +++...+          ...++.+.+ ++|+++++++....+....+..+
T Consensus       374 dPPr~g~----------~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L  412 (443)
T PRK13168        374 DPPRAGA----------AEVMQALAK-LGPKRIVYVSCNPATLARDAGVL  412 (443)
T ss_pred             CcCCcCh----------HHHHHHHHh-cCCCeEEEEEeChHHhhccHHHH
Confidence            8876422          123344554 68988888776555544444433

>PRK06202 hypothetical protein; Provisional

Probab=99.38  E-value=6.5e-12  Score=103.83  Aligned_cols=106  Identities=19%  Similarity=0.262  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC----CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEe
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMD  171 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~----~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~  171 (278)
                      .++.+|||+|||+|.++..++..    |. .+|+|+|+|+.+++.|+++....   ++.+...+....+ .+++||+|++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence            45679999999999998888752    32 38999999999999999876543   3555555554433 3578999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +.+++++.     ..+...+++++.++++  |.+++.....+
T Consensus       136 ~~~lhh~~-----d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        136 NHFLHHLD-----DAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             CCeeecCC-----hHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence            99988774     2235678899999998  56666665554

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.1e-11  Score=100.47  Aligned_cols=120  Identities=22%  Similarity=0.235  Sum_probs=96.0

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEE
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLV  169 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v  169 (278)
                      ....+.++.+|||.|+|+|.++..|+.. | ..+|+..|+.+...+.|++|++..++.+ +++..+|+.+...++.||.|
T Consensus        88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav  167 (256)
T COG2519          88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAV  167 (256)
T ss_pred             HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEE
Confidence            3356689999999999999999999974 3 3489999999999999999999988877 99999999987766788888


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH-HHHHHHhhh
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD-ELVHEVSNL  224 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~  224 (278)
                      +...+            ++-.+++.+.++|+|||.+++..++-++- .....+++.
T Consensus       168 ~LDmp------------~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~  211 (256)
T COG2519         168 FLDLP------------DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER  211 (256)
T ss_pred             EEcCC------------ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence            86432            45566699999999999998877655442 333334443

>PTZ00146 fibrillarin; Provisional

Probab=99.37  E-value=4.1e-11  Score=100.33  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=76.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~  170 (278)
                      +.++.+|||+|||+|.++..++.. + ...|+++|+++.+.+.+...++..  +|+.++..|+....    +.+.+|+|+
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEE
Confidence            478889999999999999999997 3 237999999998765555544332  47889999986532    235799998


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ++..      .   +.+...++.++.++|||||.+++.
T Consensus       208 ~Dva------~---pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        208 ADVA------Q---PDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             EeCC------C---cchHHHHHHHHHHhccCCCEEEEE
Confidence            8653      1   224455667899999999999994

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.37  E-value=3.3e-12  Score=99.62  Aligned_cols=100  Identities=21%  Similarity=0.276  Sum_probs=80.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||.|.+...|.+....+.+|+|+++..+..|.++       .+.++++|+.+--   ++++||.|+.+.+
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt   84 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQT   84 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence            57899999999999999999986435899999999999988762       4778999998742   4789999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++++.       ....+|+++.|+   |...+++-+|...
T Consensus        85 LQ~~~-------~P~~vL~EmlRV---gr~~IVsFPNFg~  114 (193)
T PF07021_consen   85 LQAVR-------RPDEVLEEMLRV---GRRAIVSFPNFGH  114 (193)
T ss_pred             HHhHh-------HHHHHHHHHHHh---cCeEEEEecChHH
Confidence            98886       666666777555   6677777666543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00811 spermidine synthase; Provisional

Probab=99.37  E-value=6e-12  Score=106.73  Aligned_cols=109  Identities=19%  Similarity=0.308  Sum_probs=84.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC-----CcceEEEEccccCCc--cCCCccEEE
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      .+++||+||||+|..+..++++ +..+|+++|+++.+++.|++.+...+     -++++++.+|.....  ..++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            4679999999999999999887 55689999999999999999886421     246899999987643  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++.+-. .  .+........+++.+++.|+|||++++...
T Consensus       156 ~D~~dp-~--~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        156 VDSTDP-V--GPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             ECCCCC-C--CchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            864321 1  111122346788999999999999988643

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.37  E-value=1.1e-11  Score=109.26  Aligned_cols=138  Identities=19%  Similarity=0.172  Sum_probs=97.5

Q ss_pred             ccccCcccccccccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc
Q 023703           73 SISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC  149 (278)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~  149 (278)
                      .+..+.+..........+...+..   ..++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|++|++.+++++
T Consensus       204 ~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~  282 (374)
T TIGR02085       204 VIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDN  282 (374)
T ss_pred             EECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            444455554444444444443322   2356799999999999999999876 589999999999999999999998878


Q ss_pred             eEEEEccccCCcc--CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          150 IKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       150 ~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      ++++.+|+.+...  ..+||+|+.+++...+.         ..+++.+. .++|+++++++....+.......+
T Consensus       283 ~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~---------~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L  346 (374)
T TIGR02085       283 LSFAALDSAKFATAQMSAPELVLVNPPRRGIG---------KELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL  346 (374)
T ss_pred             EEEEECCHHHHHHhcCCCCCEEEECCCCCCCc---------HHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence            9999999976432  25699999988864321         22234443 378988888876555555444444

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.35  E-value=7.4e-12  Score=100.10  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=78.5

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LE  163 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~  163 (278)
                      ....++.+|||+|||+|.++..++...  ..+|+++|+|+.+           ...++.++++|+.+..         ..
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~   96 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGD   96 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence            344678899999999999999888762  3479999999864           1246788888987642         24


Q ss_pred             CCccEEEeCCccceec---cC-CCChhhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHH
Q 023703          164 RQFQLVMDKGTLDAIG---LH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHE  220 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~  220 (278)
                      ++||+|+++++.+...   .+ .........++..+.++|+|||.+++..... ...+....
T Consensus        97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~  158 (188)
T TIGR00438        97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNE  158 (188)
T ss_pred             CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHH
Confidence            6799999876422110   00 0111234577899999999999999965433 33444443

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.34  E-value=3.9e-11  Score=94.27  Aligned_cols=100  Identities=16%  Similarity=0.169  Sum_probs=75.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..+++++ .+++++|+++.+++.+++++...  ++++++++|+.+.... ..||.|+++.+++
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~   88 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLPKLQPYKVVGNLPYN   88 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCccccCCCEEEECCCcc
Confidence            456799999999999999999984 58999999999999999988542  4799999999987654 4699999998885


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ..      ......+++.  ..+.++|.+++.
T Consensus        89 ~~------~~~i~~~l~~--~~~~~~~~l~~q  112 (169)
T smart00650       89 IS------TPILFKLLEE--PPAFRDAVLMVQ  112 (169)
T ss_pred             cH------HHHHHHHHhc--CCCcceEEEEEE
Confidence            21      1122222221  124477888775

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.33  E-value=7.7e-12  Score=100.53  Aligned_cols=97  Identities=20%  Similarity=0.264  Sum_probs=73.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-Cc--cCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK--LERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~~--~~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||+|.++..++......++|+|+|+.+++.+++       .+++++++|+.+ ..  .+++||+|+++.+
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            4667999999999999999987643479999999999998865       246788888865 22  3578999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.       +...+++++.+.++   .+++..++
T Consensus        85 l~~~~-------d~~~~l~e~~r~~~---~~ii~~p~  111 (194)
T TIGR02081        85 LQATR-------NPEEILDEMLRVGR---HAIVSFPN  111 (194)
T ss_pred             hHcCc-------CHHHHHHHHHHhCC---eEEEEcCC
Confidence            98775       56666677776654   45555443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.31  E-value=1.4e-11  Score=106.05  Aligned_cols=112  Identities=26%  Similarity=0.355  Sum_probs=84.2

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------CC---cceEEEEccccCCc-----cC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF---SCIKFLVDDVLDTK-----LE  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~~---~~~~~~~~d~~~~~-----~~  163 (278)
                      ++.+|||+|||-|..+..+...+...++|+|+++.+|+.|+++++..       ..   -...++.+|.....     .+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            67899999999999888888887789999999999999999999321       10   13678899887642     12


Q ss_pred             --CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          164 --RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       164 --~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                        .+||+|-+...+|...   ........+|+++.+.|+|||.++.++++..
T Consensus       142 ~~~~FDvVScQFalHY~F---ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~  190 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAF---ESEEKARQFLKNVSSLLKPGGYFIGTTPDSD  190 (331)
T ss_dssp             TTS-EEEEEEES-GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred             cCCCcceeehHHHHHHhc---CCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence              5899999987776543   4456778899999999999999999988654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.31  E-value=2.8e-11  Score=95.34  Aligned_cols=115  Identities=18%  Similarity=0.210  Sum_probs=88.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-cc-CCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~-~~~fD~v~~~~~~~  176 (278)
                      .+.-|||||||+|..+..+.+.|. ..+|+|+|+.|++.|.+.--.     -.++.+|+-+. ++ +++||.+|+...++
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-----gdlil~DMG~GlpfrpGtFDg~ISISAvQ  123 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-----GDLILCDMGEGLPFRPGTFDGVISISAVQ  123 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-----cCeeeeecCCCCCCCCCccceEEEeeeee
Confidence            567899999999999999999986 899999999999999873221     35778888653 33 69999999988887


Q ss_pred             eecc----CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          177 AIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       177 ~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      ++.-    ..........|+..+..+|++|++.++.....+.+..-.
T Consensus       124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~  170 (270)
T KOG1541|consen  124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDM  170 (270)
T ss_pred             eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHH
Confidence            6631    112233456778889999999999999987766655433

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.30  E-value=1.3e-11  Score=97.52  Aligned_cols=131  Identities=15%  Similarity=0.157  Sum_probs=88.4

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCC--CC--------cEEEEeCChHHHHHHHHHhhhCCCcc-eEEE
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG--FS--------DLTGVDYSEDAINLAQSLANRDGFSC-IKFL  153 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~--------~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~  153 (278)
                      +.....+-.+....++..|||..||+|.+.+..+..+  ..        +++|+|+++.+++.|++|++..++.. +.+.
T Consensus        14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~   93 (179)
T PF01170_consen   14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI   93 (179)
T ss_dssp             HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence            3334444445556778899999999999998877662  22        28899999999999999999988765 8999


Q ss_pred             EccccCCc-cCCCccEEEeCCccceeccC-CCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          154 VDDVLDTK-LERQFQLVMDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       154 ~~d~~~~~-~~~~fD~v~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      +.|+.+++ .++.+|.|+++++|..-.-. .....-...+++++.++|++ ..+++.+.......
T Consensus        94 ~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~  157 (179)
T PF01170_consen   94 QWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELEK  157 (179)
T ss_dssp             E--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHHH
T ss_pred             ecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHH
Confidence            99999988 56899999999998532211 11122335778999999999 55555555554443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02476 O-methyltransferase

Probab=99.30  E-value=2.5e-11  Score=101.44  Aligned_cols=117  Identities=11%  Similarity=0.152  Sum_probs=94.4

Q ss_pred             cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCC
Q 023703           84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT  160 (278)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~  160 (278)
                      .+...+++..+....++++|||||||+|..++.++.. + ..+|+++|.+++..+.|+++++..|+. +++++.+|+.+.
T Consensus       103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~  182 (278)
T PLN02476        103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES  182 (278)
T ss_pred             CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            4455566777777778899999999999999999874 2 237999999999999999999999986 599999999764


Q ss_pred             cc-------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          161 KL-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       161 ~~-------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      -.       .++||+|+....          ......+++.+.+.|+|||.+++...
T Consensus       183 L~~l~~~~~~~~FD~VFIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        183 LKSMIQNGEGSSYDFAFVDAD----------KRMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             HHHHHhcccCCCCCEEEECCC----------HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence            21       357999986543          23667788999999999999998643

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.28  E-value=1.2e-11  Score=99.36  Aligned_cols=116  Identities=19%  Similarity=0.296  Sum_probs=91.4

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK  161 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~  161 (278)
                      +...+++..+.+..++++||||||++|..++.++.. + ..+|+.+|+++...+.|+++++..|+. +++++.+|+.+.-
T Consensus        31 ~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l  110 (205)
T PF01596_consen   31 PETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL  110 (205)
T ss_dssp             HHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH
T ss_pred             HHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH
Confidence            334445666666667789999999999999999976 2 348999999999999999999999885 5999999998642


Q ss_pred             c-------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          162 L-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       162 ~-------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .       .++||+|+....          ......+++.+.+.|+|||.+++...
T Consensus       111 ~~l~~~~~~~~fD~VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  111 PELANDGEEGQFDFVFIDAD----------KRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             HHHHHTTTTTSEEEEEEEST----------GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             HHHHhccCCCceeEEEEccc----------ccchhhHHHHHhhhccCCeEEEEccc
Confidence            1       257999997543          23667788899999999999999753

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.27  E-value=1.1e-10  Score=91.11  Aligned_cols=129  Identities=18%  Similarity=0.197  Sum_probs=98.8

Q ss_pred             cccccccccccchhhhccc-cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEc
Q 023703           78 HMLNHVEDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVD  155 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~  155 (278)
                      ...|+.+.....+...+.+ ...+.++||+.+|||.+++..+.+|+..++.+|.+..++...++|.+..++. +..++..
T Consensus        21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~  100 (187)
T COG0742          21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN  100 (187)
T ss_pred             CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence            4555555566666667776 4789999999999999999999999999999999999999999999988853 5888899


Q ss_pred             cccCC--ccC--CCccEEEeCCccceeccCCCChhhHHHHHHH--HHhcccCCcEEEEEecCC
Q 023703          156 DVLDT--KLE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDS--VSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       156 d~~~~--~~~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~  212 (278)
                      |....  ...  ++||+|+.+++|..=      ..+....+..  -..+|+|+|.+++.....
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPYAKG------LLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCCccc------hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            98843  123  349999999999621      1121222222  457899999999987654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.26  E-value=4.7e-11  Score=96.05  Aligned_cols=116  Identities=22%  Similarity=0.302  Sum_probs=93.1

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEE-ccccCC
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV-DDVLDT  160 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~-~d~~~~  160 (278)
                      +....++..+....++++|||||++.|..+++++.. + ..+++.+|++++..+.|+++++..|+.+ +.++. +|..+.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            344445666666678899999999999999999987 3 3589999999999999999999999876 78888 577664


Q ss_pred             c---cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          161 K---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       161 ~---~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      -   ..++||+|+....          ..+...+++.+.++|+|||.+++-..
T Consensus       125 l~~~~~~~fDliFIDad----------K~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         125 LSRLLDGSFDLVFIDAD----------KADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             HHhccCCCccEEEEeCC----------hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence            3   2588999986432          22566788999999999999999753

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.24  E-value=1.7e-10  Score=103.73  Aligned_cols=142  Identities=17%  Similarity=0.186  Sum_probs=106.1

Q ss_pred             ccccchhhhcc--ccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703           85 DLKSEPVEEND--KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  160 (278)
Q Consensus        85 ~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~  160 (278)
                      +...++...+.  ...++.+|||+|||.|.-+..++..  +...|++.|+++.-++.++++++..|+.++.+.+.|....
T Consensus        97 d~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~  176 (470)
T PRK11933         97 EASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF  176 (470)
T ss_pred             CHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence            33344433333  5578899999999999999998886  2237999999999999999999999998899999998765


Q ss_pred             c--cCCCccEEEeCCccceeccCCCCh---------------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          161 K--LERQFQLVMDKGTLDAIGLHPDGP---------------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       161 ~--~~~~fD~v~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      .  ..+.||.|+.+.+-....+-...+               .....+|..+.++|||||+++.++|+-..+|.-..+..
T Consensus       177 ~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~  256 (470)
T PRK11933        177 GAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLW  256 (470)
T ss_pred             hhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHH
Confidence            3  356799999776544332111111               12257889999999999999999999888777666654


Q ss_pred             hhh
Q 023703          224 LSQ  226 (278)
Q Consensus       224 ~~~  226 (278)
                      +-.
T Consensus       257 ~L~  259 (470)
T PRK11933        257 LKE  259 (470)
T ss_pred             HHH
Confidence            433

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.24  E-value=1.4e-10  Score=101.74  Aligned_cols=75  Identities=15%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------------C
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------------E  163 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------------~  163 (278)
                      .+|||++||+|.+++.+++. +.+|+|+|+++.+++.|++|+..+++.+++++.+|+.+...                 .
T Consensus       208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~  286 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS  286 (362)
T ss_pred             CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence            57999999999999988886 46899999999999999999999998889999999976321                 1


Q ss_pred             CCccEEEeCCccc
Q 023703          164 RQFQLVMDKGTLD  176 (278)
Q Consensus       164 ~~fD~v~~~~~~~  176 (278)
                      .+||+|+.+++..
T Consensus       287 ~~~D~v~lDPPR~  299 (362)
T PRK05031        287 YNFSTIFVDPPRA  299 (362)
T ss_pred             CCCCEEEECCCCC
Confidence            1589999887753

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.23  E-value=9.5e-11  Score=105.57  Aligned_cols=102  Identities=15%  Similarity=0.224  Sum_probs=78.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----c-CCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~-~~~fD~v~~  171 (278)
                      ..++.+|||+|||+|.++..++... .+|+|+|+++.+++.|++|+..+++.+++++.+|+.+..    . ..+||+|+.
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~  368 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL  368 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence            3466799999999999999999874 589999999999999999999999888999999997531    1 346899998


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++-..+         ...+++.+.+ ++|+++++++.
T Consensus       369 dPPr~G~---------~~~~l~~l~~-l~~~~ivyvsc  396 (431)
T TIGR00479       369 DPPRKGC---------AAEVLRTIIE-LKPERIVYVSC  396 (431)
T ss_pred             CcCCCCC---------CHHHHHHHHh-cCCCEEEEEcC
Confidence            7664321         1233344443 78988666653

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.23  E-value=2.2e-11  Score=94.72  Aligned_cols=94  Identities=17%  Similarity=0.358  Sum_probs=73.8

Q ss_pred             EEEeCChHHHHHHHHHhhhCC---CcceEEEEccccCCcc-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccC
Q 023703          126 TGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP  201 (278)
Q Consensus       126 ~~~D~s~~~i~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  201 (278)
                      +|+|+|+.|++.|+++....+   ..+++++++|+.+.+. +++||+|++..+++++.       +...++++++++|||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-------d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-------DRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-------CHHHHHHHHHHHcCc
Confidence            589999999999987765322   2469999999998875 56899999988777664       677888999999999


Q ss_pred             CcEEEEEecCCChHHHHHHHhhhhh
Q 023703          202 GGLLVITSCNSTKDELVHEVSNLSQ  226 (278)
Q Consensus       202 gG~l~~~~~~~~~~~~~~~~~~~~~  226 (278)
                      ||.+++.+...+.......+..++.
T Consensus        74 GG~l~i~d~~~~~~~~~~~~~~~~~   98 (160)
T PLN02232         74 GSRVSILDFNKSNQSVTTFMQGWMI   98 (160)
T ss_pred             CeEEEEEECCCCChHHHHHHHHHHc
Confidence            9999999877665555554444443

>PLN02366 spermidine synthase

Probab=99.23  E-value=1.1e-10  Score=99.62  Aligned_cols=109  Identities=17%  Similarity=0.369  Sum_probs=83.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhC--CC--cceEEEEccccCCc---cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK---LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~--~~--~~~~~~~~d~~~~~---~~~~fD~v  169 (278)
                      .++++||+||||.|..+..+++++ ..+|+.+|+++.+++.|++.+...  ++  ++++++.+|.....   .+++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            456899999999999999999884 458999999999999999987642  12  46999999986542   24689999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++...-. .  .+........+++.+++.|+|||+++...
T Consensus       170 i~D~~dp-~--~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDP-V--GPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCC-C--CchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            9864321 1  12222234678899999999999998754

>PRK01581 speE spermidine synthase; Validated

Probab=99.22  E-value=2.6e-10  Score=98.10  Aligned_cols=113  Identities=19%  Similarity=0.204  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHh--h---h--CCCcceEEEEccccCCc--cCCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA--N---R--DGFSCIKFLVDDVLDTK--LERQFQ  167 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~--~---~--~~~~~~~~~~~d~~~~~--~~~~fD  167 (278)
                      ..+.+||+||||+|..+..+++++ ..+|+++|+++.+++.|++..  .   .  ..-++++++.+|+.+..  ..++||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            456799999999999999888873 458999999999999999621  1   1  12257999999998753  356899


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +|+++.+ +... ..........+++.+++.|+|||++++...++
T Consensus       229 VIIvDl~-DP~~-~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp  271 (374)
T PRK01581        229 VIIIDFP-DPAT-ELLSTLYTSELFARIATFLTEDGAFVCQSNSP  271 (374)
T ss_pred             EEEEcCC-Cccc-cchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence            9998743 1110 11122344678899999999999988875433

>TIGR00417 speE spermidine synthase

Probab=99.21  E-value=1.2e-10  Score=98.26  Aligned_cols=110  Identities=24%  Similarity=0.324  Sum_probs=82.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCCCccEEEe
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVMD  171 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~v~~  171 (278)
                      .+.+||+||||+|.++..+++++ ..+++++|+++.+++.+++.+...+    .++++++.+|.....  ..++||+|+.
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            34599999999999999988874 5689999999999999999875432    235888888876532  2578999998


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +.+.. .  .+........+++.+++.|+|||++++...+
T Consensus       152 D~~~~-~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       152 DSTDP-V--GPAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             eCCCC-C--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            65421 1  1111112467789999999999999987543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.21  E-value=1.7e-10  Score=100.91  Aligned_cols=108  Identities=13%  Similarity=0.121  Sum_probs=77.9

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-----------------
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-----------------  163 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-----------------  163 (278)
                      .+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|++|++.+++.+++++.+|+.+....                 
T Consensus       199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS  277 (353)
T ss_pred             CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence            47999999999999988887 458999999999999999999999988899999999764211                 


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      ..||+|+.+++-..         ....+++.+.   +|+++++++....+....+..+
T Consensus       278 ~~~d~v~lDPPR~G---------~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L  323 (353)
T TIGR02143       278 YNCSTIFVDPPRAG---------LDPDTCKLVQ---AYERILYISCNPETLKANLEQL  323 (353)
T ss_pred             CCCCEEEECCCCCC---------CcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHH
Confidence            13688887666321         2222333333   4777777665554444444433

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=1.5e-10  Score=92.54  Aligned_cols=116  Identities=23%  Similarity=0.309  Sum_probs=84.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-----c-----------------------
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-----S-----------------------  148 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-----~-----------------------  148 (278)
                      ..+..+|||||.+|.++..+++. |+..|+|+||++..|+.|+++.....-     .                       
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            45678999999999999999998 777999999999999999998753210     0                       


Q ss_pred             -------ce-------EEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          149 -------CI-------KFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       149 -------~~-------~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                             ++       .+...|+. ......||+|+|-..--++.+..-+. ....+++++.++|.|||+|++.--.+..
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~-GL~~ff~kis~ll~pgGiLvvEPQpWks  214 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDD-GLRRFFRKISSLLHPGGILVVEPQPWKS  214 (288)
T ss_pred             ccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccH-HHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence                   01       11111111 01235799999987776776655433 5677889999999999999998766554


Q ss_pred             H
Q 023703          215 D  215 (278)
Q Consensus       215 ~  215 (278)
                      -
T Consensus       215 Y  215 (288)
T KOG2899|consen  215 Y  215 (288)
T ss_pred             H
Confidence            3

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.20  E-value=2.5e-11  Score=97.17  Aligned_cols=112  Identities=20%  Similarity=0.279  Sum_probs=81.2

Q ss_pred             eEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEEeCCccc
Q 023703          102 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKGTLD  176 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~~~~~  176 (278)
                      .+||||||.|.+...+|.. +...++|+|++...+..+.+++...+++|+.++++|+....    .++++|.|+.+-+=-
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP   99 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP   99 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence            8999999999999999987 45699999999999999999999999999999999998732    247777777532211


Q ss_pred             eec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +.- -|...-.-...+++.+.++|+|||.+.+.+-...
T Consensus       100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~  137 (195)
T PF02390_consen  100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE  137 (195)
T ss_dssp             --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred             CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence            110 0111111225788999999999999999875543

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK03612 spermidine synthase; Provisional

Probab=99.18  E-value=1.1e-10  Score=107.17  Aligned_cols=111  Identities=24%  Similarity=0.315  Sum_probs=82.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHh--hh-----CCCcceEEEEccccCCc--cCCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLA--NR-----DGFSCIKFLVDDVLDTK--LERQFQ  167 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~--~~-----~~~~~~~~~~~d~~~~~--~~~~fD  167 (278)
                      .++++|||+|||+|..+..+++++. .+|+++|+++++++.++++.  ..     ..-++++++.+|..+..  .+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4567999999999999999998854 69999999999999999842  21     11146899999998743  357899


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+++.+.....  .........+++.+++.|||||.+++...
T Consensus       376 vIi~D~~~~~~~--~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        376 VIIVDLPDPSNP--ALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             EEEEeCCCCCCc--chhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            999975432110  01112335678999999999999998754

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.16  E-value=3.5e-10  Score=89.04  Aligned_cols=107  Identities=19%  Similarity=0.230  Sum_probs=74.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC---CcceEEEEccccCCc-----cCCCccE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTK-----LERQFQL  168 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~---~~~~~~~~~d~~~~~-----~~~~fD~  168 (278)
                      .++.+|||+|||+|..++.++.. +..+|+.+|.++ .++.++.|++.++   ..++.+...|..+..     ...+||+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            56789999999999999999998 667999999999 9999999998876   235888888876532     1358999


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      |+...++..       ......+++.+.++|+|+|.+++.....
T Consensus       123 IlasDv~Y~-------~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  123 ILASDVLYD-------EELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEES--S--------GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEecccch-------HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            998877642       2366777899999999999977776443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.16  E-value=1.5e-10  Score=96.13  Aligned_cols=122  Identities=22%  Similarity=0.293  Sum_probs=94.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC------cceEEEEccccCCc------cCC-
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------SCIKFLVDDVLDTK------LER-  164 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~------~~~~~~~~d~~~~~------~~~-  164 (278)
                      .++..++++|||-|..++..-..|...++|+||++..|+.|++++....-      -.+.|+.+|.+...      ++. 
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            46778999999999999998888888999999999999999999864321      13689999997642      233 


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhh
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  224 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  224 (278)
                      +||+|-|...++.-   ....+....++.++.++|+|||.++-+.++.  +.++..++..
T Consensus       196 ~fDivScQF~~HYa---Fetee~ar~~l~Nva~~LkpGG~FIgTiPds--d~Ii~rlr~~  250 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYA---FETEESARIALRNVAKCLKPGGVFIGTIPDS--DVIIKRLRAG  250 (389)
T ss_pred             CcceeeeeeeEeee---eccHHHHHHHHHHHHhhcCCCcEEEEecCcH--HHHHHHHHhc
Confidence            49999887666432   3456677888899999999999999887754  4555555543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.16  E-value=2.3e-10  Score=94.25  Aligned_cols=110  Identities=22%  Similarity=0.287  Sum_probs=80.6

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc----CCC
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL----ERQ  165 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~----~~~  165 (278)
                      ....+.||.+|||.|+|+|.++..|++. + ..+|+..|+.+...+.|+++++..++. ++++.+.|+.+..+    +..
T Consensus        34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~  113 (247)
T PF08704_consen   34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD  113 (247)
T ss_dssp             HHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred             HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence            3356689999999999999999999976 2 348999999999999999999999986 59999999975332    356


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcc-cCCcEEEEEecCCCh
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSCNSTK  214 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~  214 (278)
                      +|.|+.+.         +.+.   .++..+.++| +|||++++-+++-++
T Consensus       114 ~DavfLDl---------p~Pw---~~i~~~~~~L~~~gG~i~~fsP~ieQ  151 (247)
T PF08704_consen  114 FDAVFLDL---------PDPW---EAIPHAKRALKKPGGRICCFSPCIEQ  151 (247)
T ss_dssp             EEEEEEES---------SSGG---GGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred             ccEEEEeC---------CCHH---HHHHHHHHHHhcCCceEEEECCCHHH
Confidence            78777532         2232   2347899999 899998887765443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.16  E-value=1.2e-10  Score=98.46  Aligned_cols=107  Identities=21%  Similarity=0.267  Sum_probs=81.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~~  174 (278)
                      +.+++.|||+|||+|.+++..|+.|+++|+++|.|.-+ +.|++.+..+++.+ ++++.+.+.+...+ ++.|+|++--.
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM  136 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence            35788999999999999999999998899999988776 99999999999887 89999999987655 89999997311


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      =.++.  ...  ....+|-.--+.|+|||.++=.
T Consensus       137 Gy~Ll--~Es--MldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  137 GYFLL--YES--MLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             hHHHH--Hhh--hhhhhhhhhhhccCCCceEccc
Confidence            00110  011  1122233345789999987653

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.15  E-value=2.2e-10  Score=94.61  Aligned_cols=115  Identities=16%  Similarity=0.205  Sum_probs=91.2

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK  161 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~  161 (278)
                      +....++..+....+.++|||||+++|..++.++.. + ..+|+.+|.++...+.|+++++..|+. +++++.+|+.+.-
T Consensus        65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L  144 (247)
T PLN02589         65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence            344456666666667789999999999999999875 2 248999999999999999999999875 4999999987742


Q ss_pred             c--------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          162 L--------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       162 ~--------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .        .++||+|+...-          ......+++.+.+.|+|||.+++..
T Consensus       145 ~~l~~~~~~~~~fD~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        145 DQMIEDGKYHGTFDFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             HHHHhccccCCcccEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence            1        258999986533          2355677788999999999998864

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.14  E-value=5.9e-11  Score=94.91  Aligned_cols=101  Identities=17%  Similarity=0.298  Sum_probs=73.6

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc-cCCCccEEEeCCccceec
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~  179 (278)
                      .++|+|||+|..++.++.+ +.+|+|+|+|+.|++.|++.....-. ....+...++.++. .+++.|+|++...++++ 
T Consensus        36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-  113 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-  113 (261)
T ss_pred             eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence            7999999999888888888 67999999999999999876432110 01222333333322 26889999998888776 


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCc-EEEEEecC
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGG-LLVITSCN  211 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~  211 (278)
                             +...+.+++.++||++| ++.+-..+
T Consensus       114 -------dle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  114 -------DLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             -------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence                   67778899999999877 55554444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.14  E-value=6.1e-12  Score=99.57  Aligned_cols=101  Identities=26%  Similarity=0.360  Sum_probs=79.0

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC---ccCCCccEEEeCCccc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGTLD  176 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~v~~~~~~~  176 (278)
                      -.++||+|||||..+..+... ..+++|+|+|.+|+++|.++--.     -.+.+.|+..+   ..+++||+|.+..++.
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~  199 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY-----DTLYVAEAVLFLEDLTQERFDLIVAADVLP  199 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch-----HHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence            369999999999999999998 45899999999999999875211     12334444432   2357899999999887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .+.       ....++.-+...|+|||.|.++.-...
T Consensus       200 YlG-------~Le~~~~~aa~~L~~gGlfaFSvE~l~  229 (287)
T COG4976         200 YLG-------ALEGLFAGAAGLLAPGGLFAFSVETLP  229 (287)
T ss_pred             hhc-------chhhHHHHHHHhcCCCceEEEEecccC
Confidence            776       667777899999999999999864443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.13  E-value=1.9e-10  Score=93.65  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=86.5

Q ss_pred             CeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEEeCCcc
Q 023703          101 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKGTL  175 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~~~~  175 (278)
                      ..+||||||.|.+...+|.. +...++|+|+....+..|.+.+...+++|+.+++.|+....    .+++.|-|+.+-+=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            48999999999999999998 44589999999999999999999999889999999998752    23466666653221


Q ss_pred             ceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          176 DAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       176 ~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      -+.- -|...-.-...+++.+.+.|+|||.+.+.+-+..-
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y  169 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY  169 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence            1110 01122223357889999999999999998765543

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.13  E-value=1.7e-10  Score=101.53  Aligned_cols=98  Identities=27%  Similarity=0.286  Sum_probs=80.6

Q ss_pred             CCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  177 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~  177 (278)
                      +.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|++.+++.++.+.++|+..... .++||+|+.++. . 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-G-  135 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-G-  135 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC-C-
Confidence            458999999999999999876 545899999999999999999999998778899999876433 467999988652 1 


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                               ....++..+.+.+++||+++++
T Consensus       136 ---------s~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        136 ---------SPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ---------CcHHHHHHHHHHhcCCCEEEEE
Confidence                     2234567777788999999998

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.3e-09  Score=83.53  Aligned_cols=122  Identities=16%  Similarity=0.203  Sum_probs=94.1

Q ss_pred             CCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ..-++|||||+|..+..|++.  +...+.++|++|.+++..++.+..++. ++..++.|+.+.-..++.|+++.|++|--
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYVp  122 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYVP  122 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcCc
Confidence            568999999999999999887  345789999999999999999988875 68899999988655699999999998732


Q ss_pred             ecc--------------CCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh-HHHHHHHh
Q 023703          178 IGL--------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEVS  222 (278)
Q Consensus       178 ~~~--------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~  222 (278)
                      -..              ...+..-...++.++..+|.|.|.+++.....+. .+..+.++
T Consensus       123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~  182 (209)
T KOG3191|consen  123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE  182 (209)
T ss_pred             CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh
Confidence            211              2233334567778889999999999998754433 34444333

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.11  E-value=4.5e-10  Score=89.48  Aligned_cols=106  Identities=18%  Similarity=0.254  Sum_probs=79.7

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~  177 (278)
                      ...+.||.|+|-|+.+..+...-+.+|..+|..+..++.|++.+....-.-.++.+..+.++.++ .+||+|++.=++.|
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            45699999999999999887766789999999999999999876652212368889999988774 79999999777766


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.     ..+...+|++++..|+|+|.+++-+
T Consensus       135 LT-----D~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  135 LT-----DEDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             S------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-----HHHHHHHHHHHHHhCcCCcEEEEEe
Confidence            65     6788999999999999999999954

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.11  E-value=2.1e-10  Score=91.60  Aligned_cols=100  Identities=19%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ...++.+|+|+.||.|.+++.++.. ..+.|+++|++|.+++.++++++.+++.+ +..+++|..+....+.||-|+++.
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l  177 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL  177 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence            3567889999999999999999983 24589999999999999999999999876 889999999876678899888865


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEE
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV  206 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  206 (278)
                      +-.           ...++..+..++++||.+.
T Consensus       178 p~~-----------~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  178 PES-----------SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             TSS-----------GGGGHHHHHHHEEEEEEEE
T ss_pred             hHH-----------HHHHHHHHHHHhcCCcEEE
Confidence            432           2345688999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.10  E-value=8.7e-10  Score=94.36  Aligned_cols=108  Identities=15%  Similarity=0.172  Sum_probs=92.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~~  174 (278)
                      ..+|.+|||+.||-|.+++.+|..|..+|+++|++|.+++.+++|++.|++.+ +..+++|..+.... +.+|-|+++.+
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            35689999999999999999999987669999999999999999999999977 89999999988765 78888887644


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      -           ....++..+.+.+++||++.+....+...
T Consensus       266 ~-----------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~  295 (341)
T COG2520         266 K-----------SAHEFLPLALELLKDGGIIHYYEFVPEDD  295 (341)
T ss_pred             C-----------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence            3           44556688999999999998877655544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.07  E-value=2.6e-09  Score=89.66  Aligned_cols=76  Identities=20%  Similarity=0.309  Sum_probs=65.4

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++++..  .++++++++|+.+.+.+ .||.|++|.++.
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~-~~d~Vv~NlPy~  102 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP-EFNKVVSNLPYQ  102 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch-hceEEEEcCCcc
Confidence            4567899999999999999999985 5899999999999999998754  35799999999886543 489999998875

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.06  E-value=2.8e-09  Score=90.58  Aligned_cols=79  Identities=16%  Similarity=0.256  Sum_probs=67.5

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++++...+ .++++++++|+.+... ..||.|++|.+|
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNlPY  111 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANVPY  111 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecCCc
Confidence            4567899999999999999999985 489999999999999999987665 3579999999987543 468999999888


Q ss_pred             ce
Q 023703          176 DA  177 (278)
Q Consensus       176 ~~  177 (278)
                      ..
T Consensus       112 ~I  113 (294)
T PTZ00338        112 QI  113 (294)
T ss_pred             cc
Confidence            53

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.06  E-value=1.2e-09  Score=89.05  Aligned_cols=93  Identities=20%  Similarity=0.374  Sum_probs=75.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~~  177 (278)
                      ...++||||+|.|..+..++.. +.+|+++|.|+.|....++    .|   .+++  |..++. .+.+||+|.|.+++|.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg---~~vl--~~~~w~~~~~~fDvIscLNvLDR  163 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KG---FTVL--DIDDWQQTDFKFDVISCLNVLDR  163 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CC---CeEE--ehhhhhccCCceEEEeehhhhhc
Confidence            4568999999999999999997 6799999999999776665    33   3332  222232 2468999999999987


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ..       .+..+|+.+++.|+|+|++++.
T Consensus       164 c~-------~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  164 CD-------RPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             cC-------CHHHHHHHHHHHhCCCCEEEEE
Confidence            75       7788899999999999999885

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.06  E-value=1.3e-09  Score=97.72  Aligned_cols=103  Identities=19%  Similarity=0.360  Sum_probs=75.6

Q ss_pred             CCeEEEEecCCCHHHHHHhhCC-----CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCC
Q 023703          100 SWSVLDIGTGNGLLLQELSKQG-----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      +..|+|+|||+|.++...++.+     ..+|+++|-++.++..++++.+.++.. .|+++++|+.+...+.+.|+|++- 
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE-  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE-  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe-
Confidence            5789999999999987776653     459999999999999888877777774 599999999999988999999972 


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                      .+..+..+.    .....|..+.+.|||||+++=
T Consensus       266 lLGsfg~nE----l~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  266 LLGSFGDNE----LSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             --BTTBTTT----SHHHHHHHGGGGEEEEEEEES
T ss_pred             ccCCccccc----cCHHHHHHHHhhcCCCCEEeC
Confidence            222222111    223456788899999998764

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.05  E-value=1.3e-09  Score=90.56  Aligned_cols=99  Identities=20%  Similarity=0.277  Sum_probs=79.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .+..+|+|||+|+|.++..+++. +..+++..|. |..++.+++      .++++++.+|+++ +.+. +|+++...+++
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~~P~-~D~~~l~~vLh  169 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-PLPV-ADVYLLRHVLH  169 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-CCSS-ESEEEEESSGG
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-hhcc-ccceeeehhhh
Confidence            45568999999999999999887 4458999998 888888887      2589999999994 4445 99999988886


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCC--cEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPG--GLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~  210 (278)
                      ...     ..+...+|+++++.|+||  |++++.+.
T Consensus       170 ~~~-----d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  170 DWS-----DEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             GS------HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             hcc-----hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            654     668889999999999999  99999763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.04  E-value=1e-09  Score=93.91  Aligned_cols=105  Identities=17%  Similarity=0.207  Sum_probs=73.1

Q ss_pred             ccccCcccccccccccchh---hhccc-----c--CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHH
Q 023703           73 SISQGHMLNHVEDLKSEPV---EENDK-----Y--LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  141 (278)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~---~~~~~-----~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~  141 (278)
                      .+..+.+.|....+...+.   .++..     .  .++.+|||||||+|.+...++.+ ...+++|+|+++.+++.|+++
T Consensus        78 dip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~N  157 (321)
T PRK11727         78 DIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAI  157 (321)
T ss_pred             cCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHH
Confidence            3677777776643333222   22211     1  24579999999999888877765 224899999999999999999


Q ss_pred             hhhC-CCc-ceEEEE-ccccCCc-----cCCCccEEEeCCccce
Q 023703          142 ANRD-GFS-CIKFLV-DDVLDTK-----LERQFQLVMDKGTLDA  177 (278)
Q Consensus       142 ~~~~-~~~-~~~~~~-~d~~~~~-----~~~~fD~v~~~~~~~~  177 (278)
                      ++.+ ++. ++.++. .|.....     ..++||+|+||++|..
T Consensus       158 v~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~  201 (321)
T PRK11727        158 ISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA  201 (321)
T ss_pred             HHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence            9998 675 477754 3332211     2468999999999853

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.04  E-value=1.9e-09  Score=91.17  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=64.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCC-ccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~-fD~v~~~~~~  175 (278)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.+++++..   ++++++++|+.+.+.+.- ++.|++|.+|
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY  115 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPY  115 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence            35677999999999999999999964 899999999999999987643   479999999998765432 5889999887


Q ss_pred             c
Q 023703          176 D  176 (278)
Q Consensus       176 ~  176 (278)
                      .
T Consensus       116 ~  116 (272)
T PRK00274        116 N  116 (272)
T ss_pred             c
Confidence            4

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=6.6e-09  Score=90.81  Aligned_cols=148  Identities=20%  Similarity=0.195  Sum_probs=113.2

Q ss_pred             cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCC---CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703           84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  160 (278)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~  160 (278)
                      ++...++...+....++.+|||++++.|.=+.++++...   ..|+++|.++.-++..++|++..|+.++...+.|....
T Consensus       141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~  220 (355)
T COG0144         141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL  220 (355)
T ss_pred             cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence            455556666677788999999999999998888888731   24799999999999999999999998888888887654


Q ss_pred             c---cC-CCccEEEeCCccceecc---CCCC------------hhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          161 K---LE-RQFQLVMDKGTLDAIGL---HPDG------------PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       161 ~---~~-~~fD~v~~~~~~~~~~~---~~~~------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      .   .. ++||.|+...+-.....   +|+-            ......+|..+.++|||||.|+.++|+...+|.-..+
T Consensus       221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV  300 (355)
T COG0144         221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV  300 (355)
T ss_pred             cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence            3   22 36999998776543321   1211            1123578899999999999999999999888887777


Q ss_pred             hhhhhccccc
Q 023703          222 SNLSQRRIGV  231 (278)
Q Consensus       222 ~~~~~~~~~~  231 (278)
                      ..+..++..+
T Consensus       301 ~~~L~~~~~~  310 (355)
T COG0144         301 ERFLERHPDF  310 (355)
T ss_pred             HHHHHhCCCc
Confidence            7666555433

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=2.8e-09  Score=94.87  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC----CCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE----RQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~----~~fD~v~~~~  173 (278)
                      .++.++||+-||.|.+++.++... .+|+|+|+++.+++.|++|++.+++.|+.|..++..+....    ..+|.|+.++
T Consensus       292 ~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP  370 (432)
T COG2265         292 AGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP  370 (432)
T ss_pred             cCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence            466799999999999999999874 59999999999999999999999999999999999886532    4678888655


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      +=         ..--..+++.+.+ ++|..+++++....+.......+.
T Consensus       371 PR---------~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~  409 (432)
T COG2265         371 PR---------AGADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILA  409 (432)
T ss_pred             CC---------CCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHH
Confidence            43         2222233344444 577777777766555555555444

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=4.2e-10  Score=82.91  Aligned_cols=79  Identities=22%  Similarity=0.293  Sum_probs=69.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      -.|++++|+|||.|-++...+..+...|+|+|++|.+++.+.+|+....+ ++++.++|+.+.-+ .+.||.++.|++|.
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPFG  125 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCCC
Confidence            46889999999999999777777777999999999999999999988876 68999999998765 47899999999985


Q ss_pred             e
Q 023703          177 A  177 (278)
Q Consensus       177 ~  177 (278)
                      .
T Consensus       126 T  126 (185)
T KOG3420|consen  126 T  126 (185)
T ss_pred             c
Confidence            3

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.00  E-value=6e-09  Score=86.12  Aligned_cols=120  Identities=20%  Similarity=0.268  Sum_probs=95.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-C--CCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCCc----cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTK----LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~~----~~~~fD~v  169 (278)
                      ..+.+||||.||.|+..+..... +  ..+|...|+|+..++..++..+..|+.++ +|.++|+++..    .....+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            45679999999999887776655 3  35899999999999999999999999885 99999999853    24557999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe-cCCChHHHHHHH
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEV  221 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~  221 (278)
                      +..+.++.+.    +.......+..+.+++.|||.++.+. +.++..++...+
T Consensus       214 iVsGL~ElF~----Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~  262 (311)
T PF12147_consen  214 IVSGLYELFP----DNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARV  262 (311)
T ss_pred             EEecchhhCC----cHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHH
Confidence            9999998664    11234456789999999999999987 555556655544

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.00  E-value=5e-09  Score=79.23  Aligned_cols=128  Identities=22%  Similarity=0.300  Sum_probs=98.4

Q ss_pred             cccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceE
Q 023703           74 ISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIK  151 (278)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~  151 (278)
                      -.-|.+.|+..-+.+.|...+ ....+..|||+|.|||.++..+.++|.  ..++++|+|+..+....+.+     +.++
T Consensus        24 rtVGaI~PsSs~lA~~M~s~I-~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~   97 (194)
T COG3963          24 RTVGAILPSSSILARKMASVI-DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVN   97 (194)
T ss_pred             ceeeeecCCcHHHHHHHHhcc-CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCcc
Confidence            334555555544444444443 345678999999999999999999963  48999999999999998876     4567


Q ss_pred             EEEccccCCc------cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          152 FLVDDVLDTK------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       152 ~~~~d~~~~~------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++.+|+.+..      ....||.|+|.-++-.++     .....++++.+...|.+||.++..+..+
T Consensus        98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P-----~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963          98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFP-----MHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             ccccchhhHHHHHhhcCCCeeeeEEeccccccCc-----HHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            8999998764      246799999976665554     4467788999999999999999887764

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.99  E-value=2e-09  Score=94.31  Aligned_cols=97  Identities=16%  Similarity=0.248  Sum_probs=82.6

Q ss_pred             CeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCccc
Q 023703          101 WSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD  176 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~  176 (278)
                      .+|||+.||+|..++.++.+  |..+|+++|+++.+++.+++|++.+++.++.+.+.|+.....  ..+||+|..++ +.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG  124 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG  124 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence            58999999999999999987  667999999999999999999999988778999999987533  36799998765 42


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                                ....++..+.+.+++||.++++
T Consensus       125 ----------s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       125 ----------TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             ----------CcHHHHHHHHHhcccCCEEEEE
Confidence                      2235678899999999999997

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.99  E-value=2.9e-09  Score=89.05  Aligned_cols=106  Identities=17%  Similarity=0.299  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.|||+|||+|.++...++.|+++|++++. .+|.+.|++..+.+.+. +|.++.+-+.+..++++.|++++-+. .
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM-G  253 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM-G  253 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc-h
Confidence            367899999999999999999999999999995 56789999998888764 49999999999989999999997542 2


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+..+    +....-.-.+++.|||.|.++-+.
T Consensus       254 ~mL~N----ERMLEsYl~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  254 YMLVN----ERMLESYLHARKWLKPNGKMFPTV  282 (517)
T ss_pred             hhhhh----HHHHHHHHHHHhhcCCCCcccCcc
Confidence            22211    122222245779999999987653

>PLN02823 spermine synthase

Probab=98.98  E-value=4.3e-09  Score=90.88  Aligned_cols=111  Identities=14%  Similarity=0.308  Sum_probs=82.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCCCccEEEe
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVMD  171 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~v~~  171 (278)
                      .+++||.||+|.|..+..++++ +..+|+.+|+++..++.|++.+...+    -++++++.+|....-  ..++||+|+.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            4579999999999999998886 45689999999999999999876431    256999999998753  3578999998


Q ss_pred             CCccceeccCCCChhhHHHHHH-HHHhcccCCcEEEEEec
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWD-SVSKLVAPGGLLVITSC  210 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~  210 (278)
                      ... +-....+....-...+++ .+++.|+|||++++...
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~  221 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG  221 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence            632 211101111123456777 89999999999887643

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.98  E-value=2e-09  Score=85.92  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=69.8

Q ss_pred             CCCeEEEEecCCC----HHHHHHhh---C--C-CCcEEEEeCChHHHHHHHHHhh-------------------hCC---
Q 023703           99 SSWSVLDIGTGNG----LLLQELSK---Q--G-FSDLTGVDYSEDAINLAQSLAN-------------------RDG---  146 (278)
Q Consensus        99 ~~~~vLDiGcG~G----~~~~~l~~---~--~-~~~v~~~D~s~~~i~~a~~~~~-------------------~~~---  146 (278)
                      +..+|+..||++|    .+++.+.+   .  + .-+|+|+|+|+.+++.|++-.-                   ..+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4569999999999    34444555   1  2 1289999999999999976420                   001   


Q ss_pred             -C-----cceEEEEccccC-CccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          147 -F-----SCIKFLVDDVLD-TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       147 -~-----~~~~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                       +     ..|.|.+.|+.+ .+..+.||+|+|.+++-.+.     ......+++.+.+.|+|||.|++...
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~-----~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD-----PETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC-----HHHHHHHHHHHHHHcCCCCEEEEecC
Confidence             0     258999999999 45578999999999986553     55778889999999999999999743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.97  E-value=5.5e-09  Score=90.09  Aligned_cols=118  Identities=19%  Similarity=0.179  Sum_probs=90.7

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhCCC---------------------------------C-------cEEEEeCCh
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------S-------DLTGVDYSE  132 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------~-------~v~~~D~s~  132 (278)
                      .+.+-.++..++|..||+|++.+..|..+.                                 +       .++|+|+++
T Consensus       185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~  264 (381)
T COG0116         185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP  264 (381)
T ss_pred             HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence            344556667999999999999998887641                                 1       277999999


Q ss_pred             HHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCCccceeccCCCCh-h-hHHHHHHHHHhcccCCcEEEEE
Q 023703          133 DAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDGP-L-KRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       133 ~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .+++.|+.|+...|+.. |+|.++|+..+..+ +.+|+||+|+++. ..+..... . -...+.+.+++.++--+.++++
T Consensus       265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYG-eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t  343 (381)
T COG0116         265 RHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYG-ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcc-hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            99999999999999866 99999999998766 8999999999995 22222211 1 2345556777888887888887


Q ss_pred             ecC
Q 023703          209 SCN  211 (278)
Q Consensus       209 ~~~  211 (278)
                      +..
T Consensus       344 t~e  346 (381)
T COG0116         344 TSE  346 (381)
T ss_pred             ccH
Confidence            653

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.97  E-value=7.6e-09  Score=90.48  Aligned_cols=85  Identities=25%  Similarity=0.359  Sum_probs=56.8

Q ss_pred             ccccCcccccccccccchhhhcc---ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc
Q 023703           73 SISQGHMLNHVEDLKSEPVEEND---KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC  149 (278)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~  149 (278)
                      .+.++.+...-......++..+.   ...++ +|||+.||.|.+++.++... .+|+|+|+++.+++.|++|++.+++.|
T Consensus       168 ~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n  245 (352)
T PF05958_consen  168 RISPGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDN  245 (352)
T ss_dssp             EEETTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred             EECCCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence            34444444333333444444332   22233 89999999999999999984 699999999999999999999999999


Q ss_pred             eEEEEccccC
Q 023703          150 IKFLVDDVLD  159 (278)
Q Consensus       150 ~~~~~~d~~~  159 (278)
                      ++|+.+++.+
T Consensus       246 ~~f~~~~~~~  255 (352)
T PF05958_consen  246 VEFIRGDAED  255 (352)
T ss_dssp             EEEEE--SHH
T ss_pred             ceEEEeeccc
Confidence            9999887654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.96  E-value=7.7e-09  Score=91.09  Aligned_cols=108  Identities=31%  Similarity=0.450  Sum_probs=92.2

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccceecc
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGL  180 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~  180 (278)
                      ++|-+|||...++..+.+.|+..|+.+|+|+..++.+..... ...+-+.+...|+....+ +++||+|+..+++|++..
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~  129 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE  129 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence            899999999999999999999999999999999999887654 222358889999988775 689999999999999976


Q ss_pred             CCCChh---hHHHHHHHHHhcccCCcEEEEEec
Q 023703          181 HPDGPL---KRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       181 ~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +.....   .....+.++.++|+|||+++..+.
T Consensus       130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            655554   556777999999999999888776

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.95  E-value=3.7e-09  Score=91.25  Aligned_cols=116  Identities=20%  Similarity=0.285  Sum_probs=79.8

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC--------CCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCcc---
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKL---  162 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~---  162 (278)
                      ...++.+|+|.+||+|.+...+...        ...+++|+|+++.++..|+.++...+...  ..+..+|......   
T Consensus        43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~  122 (311)
T PF02384_consen   43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK  122 (311)
T ss_dssp             TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred             hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence            4456778999999999999888762        23489999999999999998887665432  4688999876543   


Q ss_pred             CCCccEEEeCCccceeccC--------------CCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          163 ERQFQLVMDKGTLDAIGLH--------------PDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ..+||+|+++++|......              .........++..+.+.|++||++.+..++
T Consensus       123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred             ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence            3689999999999765110              011122245889999999999998777653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.94  E-value=1.5e-08  Score=84.79  Aligned_cols=76  Identities=22%  Similarity=0.366  Sum_probs=63.2

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCcc---EEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ---LVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD---~v~~~~  173 (278)
                      ..++.+|||+|||+|.++..+++.+ ..|+++|+++.+++.+++++..  .++++++++|+.+.+.. .||   +|++|.
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-~~d~~~~vvsNl  102 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-DFPKQLKVVSNL  102 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-HcCCcceEEEcC
Confidence            3467899999999999999999996 4799999999999999988754  25799999999886643 466   888887


Q ss_pred             ccc
Q 023703          174 TLD  176 (278)
Q Consensus       174 ~~~  176 (278)
                      +++
T Consensus       103 Py~  105 (253)
T TIGR00755       103 PYN  105 (253)
T ss_pred             Chh
Confidence            764

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.89  E-value=3.5e-09  Score=81.44  Aligned_cols=115  Identities=19%  Similarity=0.281  Sum_probs=72.4

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCC----CccEEEeCCccc
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLER----QFQLVMDKGTLD  176 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~----~fD~v~~~~~~~  176 (278)
                      .|+|++||.|..++.+|+. +.+|+++|+++..++.|+.|++..|+. +++++++|+.+.....    .+|+|+.+++..
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG   80 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG   80 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence            6999999999999999999 468999999999999999999999975 6999999998864322    289999988775


Q ss_pred             eec--------c-CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          177 AIG--------L-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       177 ~~~--------~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      ...        + ....+.....+++.+.++ .+. ++++.-.+.+..++..
T Consensus        81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~n-v~l~LPRn~dl~ql~~  130 (163)
T PF09445_consen   81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TPN-VVLFLPRNSDLNQLSQ  130 (163)
T ss_dssp             SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S--EEEEEETTB-HHHHHH
T ss_pred             CccccccCccCHHHccCCCCHHHHHHHHHhh-CCC-EEEEeCCCCCHHHHHH
Confidence            322        1 112222344555555444 332 3344445555555543

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.89  E-value=2.2e-08  Score=79.16  Aligned_cols=108  Identities=19%  Similarity=0.276  Sum_probs=85.8

Q ss_pred             eEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceecc
Q 023703          102 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL  180 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~  180 (278)
                      +++|||+|.|.-++.++-. +..+++.+|.+..-+...+.-....+++|++++++.+.+.....+||+|++..+-     
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~-----  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA-----  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence            8999999999888877765 4458999999999999999999999999999999999984457899999997553     


Q ss_pred             CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703          181 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       181 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  220 (278)
                            ....+++-+...+++||.+++.-.....+++...
T Consensus       126 ------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~  159 (184)
T PF02527_consen  126 ------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEA  159 (184)
T ss_dssp             ------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTH
T ss_pred             ------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHH
Confidence                  4456668899999999999998776666655443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.89  E-value=2.1e-08  Score=95.40  Aligned_cols=114  Identities=25%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC------C-------------------------------------CCcEEEEeCChHH
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ------G-------------------------------------FSDLTGVDYSEDA  134 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~------~-------------------------------------~~~v~~~D~s~~~  134 (278)
                      .++..++|.+||+|.+.+..+..      |                                     ..+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            45789999999999999887652      0                                     1259999999999


Q ss_pred             HHHHHHHhhhCCCcc-eEEEEccccCCccC---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcc---cCCcEEEE
Q 023703          135 INLAQSLANRDGFSC-IKFLVDDVLDTKLE---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV---APGGLLVI  207 (278)
Q Consensus       135 i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---kpgG~l~~  207 (278)
                      ++.|++|+..+|+.+ +.+.++|+.+....   ++||+|++|++|..-...   ..+...+...+.+.+   .+|+.+++
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~---~~~l~~lY~~lg~~lk~~~~g~~~~l  345 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE---EPALIALYSQLGRRLKQQFGGWNAAL  345 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc---hHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            999999999999865 89999999886532   469999999998532211   112233333333333   49999988


Q ss_pred             EecCCCh
Q 023703          208 TSCNSTK  214 (278)
Q Consensus       208 ~~~~~~~  214 (278)
                      .+.....
T Consensus       346 lt~~~~l  352 (702)
T PRK11783        346 FSSSPEL  352 (702)
T ss_pred             EeCCHHH
Confidence            8776543

>PRK04148 hypothetical protein; Provisional

Probab=98.88  E-value=2.5e-08  Score=73.97  Aligned_cols=68  Identities=24%  Similarity=0.463  Sum_probs=57.3

Q ss_pred             CCCeEEEEecCCCH-HHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~-~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~  174 (278)
                      ++.+|||||||+|. ++..|++.|+ +|+++|+++.+++.++++       .+.++.+|+++..+  -+.+|+|++..+
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysirp   86 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSIRP   86 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence            45789999999995 8999998886 899999999999988774       36889999998765  378999997543

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.88  E-value=7.4e-09  Score=84.56  Aligned_cols=89  Identities=16%  Similarity=0.211  Sum_probs=59.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHH-HHHHhhhCCCcce-EEEEccccCCcc-----C-CCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL-AQSLANRDGFSCI-KFLVDDVLDTKL-----E-RQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~-a~~~~~~~~~~~~-~~~~~d~~~~~~-----~-~~fD~v  169 (278)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+++.++.. .+++      +++ .+...|+.....     + ..+|++
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~------~~v~~~~~~ni~~~~~~~~~~d~~~~Dvs  147 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD------ERVKVLERTNIRYVTPADIFPDFATFDVS  147 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC------CCeeEeecCCcccCCHhHcCCCceeeeEE
Confidence            4677999999999999999999987799999999987765 3322      122 233334432211     1 234444


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      +.               .....+..+.++|+| |.+++.
T Consensus       148 fi---------------S~~~~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       148 FI---------------SLISILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             Ee---------------ehHhHHHHHHHHhCc-CeEEEE
Confidence            43               222245889999999 776654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.87  E-value=2e-08  Score=84.39  Aligned_cols=107  Identities=21%  Similarity=0.326  Sum_probs=85.6

Q ss_pred             CeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCCCccEEEeCC
Q 023703          101 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVMDKG  173 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~v~~~~  173 (278)
                      ++||-||-|.|..+..+.++. ..+++.+|+++..++.|++.+....    -++++++..|..++-  ...+||+|+.+.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            699999999999999999994 5699999999999999999987654    356899999998764  245899999865


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +=. .  .+........+++.+++.|+|+|+++..+.
T Consensus       158 tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~  191 (282)
T COG0421         158 TDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQAG  191 (282)
T ss_pred             CCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence            422 1  222223446788999999999999999843

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.85  E-value=4.6e-09  Score=83.72  Aligned_cols=113  Identities=19%  Similarity=0.238  Sum_probs=89.4

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCc---cCCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK---LERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~---~~~~fD~v~~  171 (278)
                      ..++.+|||.+.|-|..++..+++|+.+|+.++.+|..++.|+-|==..++.  .++++.+|+.+.-   .+++||+|+-
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence            4568999999999999999999999879999999999999998663333322  4799999998753   3578999997


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +++=-.+    .+..-...+.+++.|+|||||.++--+.++.
T Consensus       212 DPPRfS~----AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         212 DPPRFSL----AGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             CCCccch----hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            6653222    2344567888999999999999988776655

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.85  E-value=9.9e-09  Score=86.57  Aligned_cols=105  Identities=16%  Similarity=0.266  Sum_probs=78.4

Q ss_pred             CCeEEEEecCCC----HHHHHHhhC-C----CCcEEEEeCChHHHHHHHHHhhh-----------------------CC-
Q 023703          100 SWSVLDIGTGNG----LLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANR-----------------------DG-  146 (278)
Q Consensus       100 ~~~vLDiGcG~G----~~~~~l~~~-~----~~~v~~~D~s~~~i~~a~~~~~~-----------------------~~-  146 (278)
                      ..+|+..||+||    .+++.+.+. +    .-+|+|+|+|+.+++.|++..-.                       .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            469999999999    344444442 1    12799999999999999876210                       01 


Q ss_pred             ------C-cceEEEEccccCCc--cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          147 ------F-SCIKFLVDDVLDTK--LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       147 ------~-~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                            + ..|.|.+.|+.+.+  +.+.||+|+|.+++-++.     ......+++.+.+.|+|||.|++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-----~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-----KTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-----HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                  1 23789999998853  358899999998875552     4567788899999999999887764

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.85  E-value=1.6e-08  Score=80.20  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=81.0

Q ss_pred             eEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCCcc---------CCCccEEE
Q 023703          102 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL---------ERQFQLVM  170 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~~~---------~~~fD~v~  170 (278)
                      +|||||||||.-+..++++ +.-.-.-.|.++......+......+++|+ .-+..|+.....         .++||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            5999999999999999998 333677789999988777777777776663 345677766421         35899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +.++++.++     ......+++.+.++|+|||.|++-.+
T Consensus       108 ~~N~lHI~p-----~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen  108 CINMLHISP-----WSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             ehhHHHhcC-----HHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            998886543     44667888999999999999999643

The function of this family is unknown.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.81  E-value=3.8e-08  Score=81.73  Aligned_cols=109  Identities=19%  Similarity=0.257  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCC-CccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LER-QFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~-~fD~v  169 (278)
                      ..+++||-||-|.|..+..+.++. ..+|+.+|+++..++.|++.+....    -++++++.+|....-  ..+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            357899999999999999999884 4689999999999999999876532    146999999997753  234 89999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +....-   +..+....-...+++.+++.|+|||++++..
T Consensus       155 i~D~~d---p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTD---PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEESSS---TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCC---CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            975432   1111111234678899999999999999875

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.80  E-value=1.1e-08  Score=80.92  Aligned_cols=112  Identities=16%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             cchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCc
Q 023703           88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQF  166 (278)
Q Consensus        88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~f  166 (278)
                      ..++..+....++..|.|+|||.+.++..+... . +|...|+-+.               +-.+..+|+...|+ ++..
T Consensus        61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~-~V~SfDLva~---------------n~~Vtacdia~vPL~~~sv  123 (219)
T PF05148_consen   61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H-KVHSFDLVAP---------------NPRVTACDIANVPLEDESV  123 (219)
T ss_dssp             HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S---------------STTEEES-TTS-S--TT-E
T ss_pred             HHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c-eEEEeeccCC---------------CCCEEEecCccCcCCCCce
Confidence            345555555566779999999999999776533 3 7999998432               22467899988876 5889


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC---hHHHHHHHhhh
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST---KDELVHEVSNL  224 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~  224 (278)
                      |+++..-++...        +...++.++.|+|||||.|.|.+....   ...+.+.+..+
T Consensus       124 Dv~VfcLSLMGT--------n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~  176 (219)
T PF05148_consen  124 DVAVFCLSLMGT--------NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKL  176 (219)
T ss_dssp             EEEEEES---SS---------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCT
T ss_pred             eEEEEEhhhhCC--------CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHC
Confidence            999875554322        778889999999999999999864433   34444444433

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.79  E-value=8.7e-08  Score=81.12  Aligned_cols=73  Identities=15%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CC---CccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ER---QFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~---~fD~v~  170 (278)
                      .++..+||.+||.|..+..+++..  ..+|+|+|.++.+++.|++++..  ..++.++++|..+...  +.   ++|.|+
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl   95 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGIL   95 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence            567799999999999999999883  35899999999999999998865  3579999999987531  22   789888


Q ss_pred             eC
Q 023703          171 DK  172 (278)
Q Consensus       171 ~~  172 (278)
                      .+
T Consensus        96 ~D   97 (296)
T PRK00050         96 LD   97 (296)
T ss_pred             EC
Confidence            65

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.79  E-value=1.5e-08  Score=85.87  Aligned_cols=144  Identities=22%  Similarity=0.267  Sum_probs=107.4

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-  161 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-  161 (278)
                      +...++...+....++.+|||++++.|.=+..+++. + ...+++.|+++.-+...+.+++..|+.++.....|..... 
T Consensus        71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~  150 (283)
T PF01189_consen   71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP  150 (283)
T ss_dssp             HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc
Confidence            444445555566778899999999999998888886 2 3489999999999999999999999988888888887753 


Q ss_pred             --cCCCccEEEeCCccceecc---CCC--------Ch----hhHHHHHHHHHhcc----cCCcEEEEEecCCChHHHHHH
Q 023703          162 --LERQFQLVMDKGTLDAIGL---HPD--------GP----LKRIMYWDSVSKLV----APGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       162 --~~~~fD~v~~~~~~~~~~~---~~~--------~~----~~~~~~l~~~~~~L----kpgG~l~~~~~~~~~~~~~~~  220 (278)
                        ....||.|+.+.+-.....   ++.        ..    .....+|+.+.+.+    ||||+++.++|+-..+|....
T Consensus       151 ~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~v  230 (283)
T PF01189_consen  151 KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEV  230 (283)
T ss_dssp             HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHH
T ss_pred             cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHH
Confidence              2346999998665443321   111        11    12257889999999    999999999998877776666


Q ss_pred             Hhhhhhcc
Q 023703          221 VSNLSQRR  228 (278)
Q Consensus       221 ~~~~~~~~  228 (278)
                      +..+-.++
T Consensus       231 V~~fl~~~  238 (283)
T PF01189_consen  231 VEKFLKRH  238 (283)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhC
Confidence            66555444

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.77  E-value=3.8e-08  Score=82.01  Aligned_cols=106  Identities=16%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             CCCeEEEEecCCC----HHHHHHhhCC------CCcEEEEeCChHHHHHHHHHhhh-----C----------------C-
Q 023703           99 SSWSVLDIGTGNG----LLLQELSKQG------FSDLTGVDYSEDAINLAQSLANR-----D----------------G-  146 (278)
Q Consensus        99 ~~~~vLDiGcG~G----~~~~~l~~~~------~~~v~~~D~s~~~i~~a~~~~~~-----~----------------~-  146 (278)
                      ...+|+-+||+||    .+++.+.+..      .-+|+|+|+|..+++.|+.-.-.     .                + 
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            3679999999999    4555555542      13899999999999999654211     0                1 


Q ss_pred             ------C-cceEEEEccccCCc-cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          147 ------F-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       147 ------~-~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                            + ..|.|...|+.+.. ..+.||+|+|.+++-.+.     ......++...+..|+|||.|++-.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-----~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-----EETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-----HHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                  1 23788888888876 678899999999986553     4466788899999999999999964

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=3.6e-08  Score=77.46  Aligned_cols=104  Identities=17%  Similarity=0.316  Sum_probs=81.0

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-CC--CcEEEEeCChHHHHHHHHHhhhCC----------CcceEEEEccccCCc
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GF--SDLTGVDYSEDAINLAQSLANRDG----------FSCIKFLVDDVLDTK  161 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--~~v~~~D~s~~~i~~a~~~~~~~~----------~~~~~~~~~d~~~~~  161 (278)
                      .++.|+.+.||+|+|+|.++..++.. +.  ...+|||.-++.++.+++++...-          ..++.++.+|.....
T Consensus        78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~  157 (237)
T KOG1661|consen   78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY  157 (237)
T ss_pred             HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence            45789999999999999999888854 22  245999999999999999976532          135788899998865


Q ss_pred             c-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          162 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       162 ~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      . ..+||.|.+-....-++             +++...|+|||.+++-...
T Consensus       158 ~e~a~YDaIhvGAaa~~~p-------------q~l~dqL~~gGrllip~~~  195 (237)
T KOG1661|consen  158 AEQAPYDAIHVGAAASELP-------------QELLDQLKPGGRLLIPVGQ  195 (237)
T ss_pred             CccCCcceEEEccCccccH-------------HHHHHhhccCCeEEEeecc
Confidence            4 57899999864433332             7888999999999987653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.73  E-value=9.5e-08  Score=87.45  Aligned_cols=115  Identities=13%  Similarity=0.031  Sum_probs=84.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~  174 (278)
                      .+..+||||||.|.++..+|.. +...++|+|++...+..+.+.....++.|+.++..|+....   +++++|.|+.+.+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            3568999999999999999998 44589999999999999988888888889999888874322   3466777765432


Q ss_pred             cceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          175 LDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       175 ~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      =-+.. -|.....-...+++.+.++|+|||.+.+.+-...
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~  466 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN  466 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence            21111 0222222335788999999999999998875543

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.71  E-value=4.9e-08  Score=90.21  Aligned_cols=113  Identities=15%  Similarity=0.161  Sum_probs=78.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC---------CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LE  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~  163 (278)
                      ...+|||.|||+|.+...++...         ..+++|+|+++.+++.++.++...+...+.+.+.|.....      ..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            34689999999999998887641         1378999999999999999987765223555555543321      13


Q ss_pred             CCccEEEeCCccceeccCCC--------------------------------------C-hhhHHH-HHHHHHhcccCCc
Q 023703          164 RQFQLVMDKGTLDAIGLHPD--------------------------------------G-PLKRIM-YWDSVSKLVAPGG  203 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~--------------------------------------~-~~~~~~-~l~~~~~~LkpgG  203 (278)
                      ++||+|+.|+++..+.....                                      + ...... +++.+.++|+|||
T Consensus       111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G  190 (524)
T TIGR02987       111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG  190 (524)
T ss_pred             CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence            58999999999975432110                                      0 011122 3467889999999


Q ss_pred             EEEEEecC
Q 023703          204 LLVITSCN  211 (278)
Q Consensus       204 ~l~~~~~~  211 (278)
                      ++.+..+.
T Consensus       191 ~~~~I~P~  198 (524)
T TIGR02987       191 YVSIISPA  198 (524)
T ss_pred             EEEEEECh
Confidence            99887664

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.68  E-value=2.1e-07  Score=77.40  Aligned_cols=99  Identities=15%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEccccCCccCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ..+++||-||.|.|..+..+.++. .+|+.+|+++..++.+++.+...    .-++++++.. +.+ ...++||+|+...
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence            456899999999999999999996 49999999999999999965432    1134666541 211 1236899999875


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .++            ..+.+.+++.|+|||+++....+
T Consensus       148 ~~~------------~~fy~~~~~~L~~~Gi~v~Qs~s  173 (262)
T PRK00536        148 EPD------------IHKIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_pred             CCC------------hHHHHHHHHhcCCCcEEEECCCC
Confidence            421            34558899999999999997533

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.66  E-value=9.7e-08  Score=74.29  Aligned_cols=104  Identities=18%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      -.+++|||+|+|+|..++..+..|.+.|+..|+.|..+...+-|.+.+++ ++.+...|...  .+..||+++....+..
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~LagDlfy~  154 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLLLAGDLFYN  154 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCcceeEEEeeceecC
Confidence            46889999999999999999999988999999999999999999999986 79999999876  5678999998766532


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEE-EecCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVI-TSCNS  212 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~  212 (278)
                      -.       ....++. +.+.|+..|..++ .++..
T Consensus       155 ~~-------~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         155 HT-------EADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             ch-------HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            21       3334445 5555555555444 44433

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.2e-07  Score=78.17  Aligned_cols=76  Identities=17%  Similarity=0.193  Sum_probs=66.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCC--CccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER--QFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~fD~v~~~~~~  175 (278)
                      .++..|||||+|.|.+|..|++++. +|+++|+++.+++..++.+...  .+++++++|+....++.  .++.|++|-+|
T Consensus        29 ~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~--~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY  105 (259)
T COG0030          29 SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY--DNLTVINGDALKFDFPSLAQPYKVVANLPY  105 (259)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc--cceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence            4578999999999999999999964 7999999999999999987633  57999999999987765  78899999888


Q ss_pred             c
Q 023703          176 D  176 (278)
Q Consensus       176 ~  176 (278)
                      .
T Consensus       106 ~  106 (259)
T COG0030         106 N  106 (259)
T ss_pred             c
Confidence            5

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.65  E-value=9.1e-08  Score=77.52  Aligned_cols=100  Identities=14%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             cchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCc
Q 023703           88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQF  166 (278)
Q Consensus        88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~f  166 (278)
                      ..++..+........|.|+|||.+.++.   ... .+|+..|+-+.               +-+++.+|+...+. +++.
T Consensus       169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~sv  229 (325)
T KOG3045|consen  169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SER-HKVHSFDLVAV---------------NERVIACDMRNVPLEDESV  229 (325)
T ss_pred             HHHHHHHHhCcCceEEEecccchhhhhh---ccc-cceeeeeeecC---------------CCceeeccccCCcCccCcc
Confidence            3345555555667789999999998876   222 37999997332               45778999999876 6889


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      |+++..-++..        .+...++.++.|+|+|||.+++.......
T Consensus       230 DvaV~CLSLMg--------tn~~df~kEa~RiLk~gG~l~IAEv~SRf  269 (325)
T KOG3045|consen  230 DVAVFCLSLMG--------TNLADFIKEANRILKPGGLLYIAEVKSRF  269 (325)
T ss_pred             cEEEeeHhhhc--------ccHHHHHHHHHHHhccCceEEEEehhhhc
Confidence            99887544422        26778889999999999999998654443

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.64  E-value=2e-08  Score=79.37  Aligned_cols=76  Identities=21%  Similarity=0.194  Sum_probs=64.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-----CCCccEEEeC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-----ERQFQLVMDK  172 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-----~~~fD~v~~~  172 (278)
                      ....|+|..||.|..++..+..++ .|+++|++|.-+..|+.|++-.|+++ ++|+++|+.+...     ...+|+|+..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            445899999999999999999975 89999999999999999999999975 9999999988642     2346688776


Q ss_pred             Ccc
Q 023703          173 GTL  175 (278)
Q Consensus       173 ~~~  175 (278)
                      ++.
T Consensus       173 ppw  175 (263)
T KOG2730|consen  173 PPW  175 (263)
T ss_pred             CCC
Confidence            655

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.64  E-value=3.4e-08  Score=78.59  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=87.1

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcccee
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAI  178 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~  178 (278)
                      ...++|||||-|.+..++...+..+++-+|.|-.|++.++.. +..++ .+...++|-..+++ +.++|+|++...++++
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslHW~  150 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLHWT  150 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhhhh
Confidence            348999999999999999999877999999999999998863 22333 36677888777765 5789999998888766


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEec-CCChHHHHHHH
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEV  221 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~  221 (278)
                      .       +......+++..|||+|.++.+-. ..+..++...+
T Consensus       151 N-------dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~sl  187 (325)
T KOG2940|consen  151 N-------DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSL  187 (325)
T ss_pred             c-------cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHh
Confidence            4       444445889999999999988754 44445554433

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.1e-07  Score=84.29  Aligned_cols=89  Identities=24%  Similarity=0.297  Sum_probs=68.4

Q ss_pred             ccccccCcccccccccccchhh---hccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC
Q 023703           71 CISISQGHMLNHVEDLKSEPVE---ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  147 (278)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~  147 (278)
                      +..+.++.++.........+-.   .......++.+||+.||||.+++.+++. ..+|+|+++++.+++-|+.|++.+|+
T Consensus       352 tF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi  430 (534)
T KOG2187|consen  352 TFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI  430 (534)
T ss_pred             EEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc
Confidence            3455666665444333222222   2345567789999999999999999997 56999999999999999999999999


Q ss_pred             cceEEEEccccCC
Q 023703          148 SCIKFLVDDVLDT  160 (278)
Q Consensus       148 ~~~~~~~~d~~~~  160 (278)
                      +|.+|+++-+.+.
T Consensus       431 sNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  431 SNATFIVGQAEDL  443 (534)
T ss_pred             cceeeeecchhhc
Confidence            9999999965553

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.61  E-value=1.9e-07  Score=74.69  Aligned_cols=112  Identities=16%  Similarity=0.296  Sum_probs=87.6

Q ss_pred             cchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc---
Q 023703           88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK---  161 (278)
Q Consensus        88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~---  161 (278)
                      .+++..+.+...++++||||.-||..++.+|..  ...+|+++|+++.+.+.+.+..+..|+.. |++++++..+.-   
T Consensus        62 g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l  141 (237)
T KOG1663|consen   62 GQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL  141 (237)
T ss_pred             HHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence            344555555567789999999999888888776  12389999999999999999999888865 999999987742   


Q ss_pred             ----cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          162 ----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       162 ----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                          ..++||.++...         ... ....+++++.+++|+||++++..
T Consensus       142 ~~~~~~~tfDfaFvDa---------dK~-nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  142 LADGESGTFDFAFVDA---------DKD-NYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HhcCCCCceeEEEEcc---------chH-HHHHHHHHHHhhcccccEEEEec
Confidence                146788888532         222 44477899999999999999975

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.57  E-value=3.1e-07  Score=73.86  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=82.3

Q ss_pred             CCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCC-ccEEEeCCccce
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLDA  177 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~-fD~v~~~~~~~~  177 (278)
                      +.+++|||+|.|.-++.++-. +..+|+-+|....-+...+......+++|++++++.+.+.....+ ||+|.+..+.  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva--  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA--  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence            579999999999999888733 334799999999999999999999999899999999998765545 9999987543  


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                               ....+.+-+...+|+||.++..-...
T Consensus       146 ---------~L~~l~e~~~pllk~~g~~~~~k~~~  171 (215)
T COG0357         146 ---------SLNVLLELCLPLLKVGGGFLAYKGLA  171 (215)
T ss_pred             ---------chHHHHHHHHHhcccCCcchhhhHHh
Confidence                     33445577889999999876554433

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.53  E-value=1.4e-07  Score=72.89  Aligned_cols=101  Identities=16%  Similarity=0.193  Sum_probs=80.3

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceecc
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL  180 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~  180 (278)
                      ..+.|+|+|+|.++...+.. +.+|++++.+|.-.+.|.+|++..|..+++++.+|+.+..+ +..|+|+|-. +|...+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEm-lDTaLi  110 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEM-LDTALI  110 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHH-hhHHhh
Confidence            58999999999999988887 66999999999999999999988888889999999998766 5678888743 222211


Q ss_pred             CCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          181 HPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       181 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .    +.....+..+.+.|+.++.++-.
T Consensus       111 ~----E~qVpV~n~vleFLr~d~tiiPq  134 (252)
T COG4076         111 E----EKQVPVINAVLEFLRYDPTIIPQ  134 (252)
T ss_pred             c----ccccHHHHHHHHHhhcCCccccH
Confidence            1    23445567778888999888754

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.50  E-value=6.7e-07  Score=73.13  Aligned_cols=80  Identities=20%  Similarity=0.266  Sum_probs=67.0

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ....++..|||+|.|||.++..|.+.| ++|++++++|.++....++.+.....+ .+++++|...... ..||.+++|-
T Consensus        54 a~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~fd~cVsNl  131 (315)
T KOG0820|consen   54 ADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRFDGCVSNL  131 (315)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cccceeeccC
Confidence            345788899999999999999999997 589999999999999999987554333 8999999987532 4589999987


Q ss_pred             ccc
Q 023703          174 TLD  176 (278)
Q Consensus       174 ~~~  176 (278)
                      ++.
T Consensus       132 Pyq  134 (315)
T KOG0820|consen  132 PYQ  134 (315)
T ss_pred             Ccc
Confidence            774

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.44  E-value=2.3e-07  Score=73.65  Aligned_cols=113  Identities=23%  Similarity=0.333  Sum_probs=68.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------cC---CC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LE---RQ  165 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--------~~---~~  165 (278)
                      ++.+|||+||++|.++..+.+++  ..+|+|+|+.+.           ...+++.++++|..+..        ..   ++
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence            45799999999999999999996  459999999887           11134666677765431        11   58


Q ss_pred             ccEEEeCCccceeccCCCC----hhhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHHHh
Q 023703          166 FQLVMDKGTLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVS  222 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~  222 (278)
                      +|+|+++...........+    .......+.-+.+.|+|||.+++..... ...++...+.
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~  153 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLK  153 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHH
T ss_pred             cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHH
Confidence            9999998854322210000    1122344456667899999998876543 2235555444

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.43  E-value=3.6e-06  Score=72.24  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=77.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC----C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEE--EEccccCC----cc---
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF--LVDDVLDT----KL---  162 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~--~~~d~~~~----~~---  162 (278)
                      ..++..++|+|||+|.=+..|.+.    + ...++++|+|..+++.+.+++....++.+.+  +++|..+.    +.   
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~  153 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN  153 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence            356678999999999766554442    1 2479999999999999999987444455554  78888653    11   


Q ss_pred             CCCccEEEeCC-ccceeccCCCChhhHHHHHHHHHh-cccCCcEEEEEe
Q 023703          163 ERQFQLVMDKG-TLDAIGLHPDGPLKRIMYWDSVSK-LVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~  209 (278)
                      .....+++..+ ++..     ..+.....+|+++++ .|+|||.|++..
T Consensus       154 ~~~~r~~~flGSsiGN-----f~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       154 RSRPTTILWLGSSIGN-----FSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             cCCccEEEEeCccccC-----CCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence            22356666554 3332     346688899999999 999999998863

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.43  E-value=5.4e-06  Score=66.77  Aligned_cols=111  Identities=22%  Similarity=0.227  Sum_probs=76.8

Q ss_pred             EEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCCccceec
Q 023703          103 VLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTLDAIG  179 (278)
Q Consensus       103 vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~  179 (278)
                      |.||||--|.+...|.+.|. .+++++|+++..++.|+++.+..++.+ ++++.+|..+.-.+ +..|.|+..+.     
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM-----   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM-----   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC-----
Confidence            68999999999999999974 489999999999999999999998755 99999998764333 33787775432     


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                          +-.....+|+.....++....|++. ++.....++..+..
T Consensus        76 ----GG~lI~~ILe~~~~~~~~~~~lILq-P~~~~~~LR~~L~~  114 (205)
T PF04816_consen   76 ----GGELIIEILEAGPEKLSSAKRLILQ-PNTHAYELRRWLYE  114 (205)
T ss_dssp             -----HHHHHHHHHHTGGGGTT--EEEEE-ESS-HHHHHHHHHH
T ss_pred             ----CHHHHHHHHHhhHHHhccCCeEEEe-CCCChHHHHHHHHH
Confidence                1235566777777777666666665 55666666666554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.38  E-value=5.2e-06  Score=72.03  Aligned_cols=130  Identities=16%  Similarity=0.105  Sum_probs=97.8

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCcc
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQ  167 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD  167 (278)
                      .+..++++.+|||+++..|.=+.++|..  .-..|++.|.+..-+...+.++...|+.+..+...|..+.+   ..++||
T Consensus       235 ~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fD  314 (460)
T KOG1122|consen  235 MALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFD  314 (460)
T ss_pred             eecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccc
Confidence            3455688999999999999877777764  22379999999999999999999999988888888887654   245899


Q ss_pred             EEEeCCccce--eccCC------CC-------hhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          168 LVMDKGTLDA--IGLHP------DG-------PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       168 ~v~~~~~~~~--~~~~~------~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      -|+...+-..  +..-+      ..       ..-..++|..+.+++++||+|+.++|+-..++.-..+.
T Consensus       315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~  384 (460)
T KOG1122|consen  315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVD  384 (460)
T ss_pred             eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHH
Confidence            9997766554  22111      00       11224677889999999999999999887766555443

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.38  E-value=2.9e-06  Score=72.26  Aligned_cols=141  Identities=23%  Similarity=0.318  Sum_probs=97.3

Q ss_pred             hhhhcccccccccCcccccccc---cccchhhhccccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHH
Q 023703           64 ASWTKSLCISISQGHMLNHVED---LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQ  139 (278)
Q Consensus        64 ~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~  139 (278)
                      ..|.++....++-+.-..++++   .+..+...+.......+||-+|.|.|.....+.+.+ ..+|+-+|.+|.+++.++
T Consensus       251 Tr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~  330 (508)
T COG4262         251 TRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS  330 (508)
T ss_pred             EEecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence            3677777667766665555532   111111222223445689999999999999999985 679999999999999999


Q ss_pred             HHhhhC-----CC--cceEEEEccccCCcc--CCCccEEEeCCccceeccCCCCh----hhHHHHHHHHHhcccCCcEEE
Q 023703          140 SLANRD-----GF--SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLV  206 (278)
Q Consensus       140 ~~~~~~-----~~--~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~  206 (278)
                      ++....     ..  ++++++..|+.++-.  .++||.||.+-+      +|..+    .-...+..-+++.|+++|+++
T Consensus       331 ~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~------DP~tps~~rlYS~eFY~ll~~~l~e~Gl~V  404 (508)
T COG4262         331 HATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP------DPSTPSIGRLYSVEFYRLLSRHLAETGLMV  404 (508)
T ss_pred             hhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC------CCCCcchhhhhhHHHHHHHHHhcCcCceEE
Confidence            553221     11  458999999988643  468999886321      22221    233567788999999999999


Q ss_pred             EEec
Q 023703          207 ITSC  210 (278)
Q Consensus       207 ~~~~  210 (278)
                      +...
T Consensus       405 vQag  408 (508)
T COG4262         405 VQAG  408 (508)
T ss_pred             EecC
Confidence            9753

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.36  E-value=1.3e-06  Score=70.31  Aligned_cols=105  Identities=18%  Similarity=0.237  Sum_probs=63.6

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhh-------hCCC--cceEEEEccccCCcc---
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVDDVLDTKL---  162 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~-------~~~~--~~~~~~~~d~~~~~~---  162 (278)
                      ++.++...+|||||.|.....++.. ++.+.+|||+.+...+.|+....       ..|.  .++.+..+|+.+...   
T Consensus        39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~  118 (205)
T PF08123_consen   39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD  118 (205)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence            3567889999999999988877655 77679999999998887765432       2332  358889999887542   


Q ss_pred             -CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          163 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                       -...|+|++|...-        ..+....+.+...-||+|.+++..
T Consensus       119 ~~s~AdvVf~Nn~~F--------~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  119 IWSDADVVFVNNTCF--------DPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             HGHC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             hhcCCCEEEEecccc--------CHHHHHHHHHHHhcCCCCCEEEEC
Confidence             13468999987531        113444446777788998877654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.31  E-value=1.3e-06  Score=76.16  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=88.8

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-CCCccEEEeC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ....++..++|+|||.|.....++..+.+.++|+|.++..+..+........+.+ ..++.+|+...++ +..||.+.+.
T Consensus       106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l  185 (364)
T KOG1269|consen  106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL  185 (364)
T ss_pred             hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence            3446777899999999999999999865699999999999988888777666654 5567888888765 6889999988


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+..+..       .....++++.++++|||.++...
T Consensus       186 d~~~~~~-------~~~~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  186 EVVCHAP-------DLEKVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             eecccCC-------cHHHHHHHHhcccCCCceEEeHH
Confidence            7776665       66777799999999999998853

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.29  E-value=5.4e-06  Score=69.16  Aligned_cols=102  Identities=25%  Similarity=0.340  Sum_probs=73.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh---C------------------------------
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR---D------------------------------  145 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~---~------------------------------  145 (278)
                      ...+||-.|||.|+++..++..|+ .+.|.|.|--|+=..+-.+..   .                              
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            356999999999999999999998 799999999886554433221   0                              


Q ss_pred             -------CCcceEEEEccccCCcc-C---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          146 -------GFSCIKFLVDDVLDTKL-E---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       146 -------~~~~~~~~~~d~~~~~~-~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                             .-.++....+|..+... +   ++||+|+..--+|       ...+...+++.+.++|||||..+=.
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-------TA~Ni~~Yi~tI~~lLkpgG~WIN~  201 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-------TAENIIEYIETIEHLLKPGGYWINF  201 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-------chHHHHHHHHHHHHHhccCCEEEec
Confidence                   00135555666665432 2   5788888753333       2447889999999999999966543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.29  E-value=1.9e-06  Score=71.42  Aligned_cols=110  Identities=20%  Similarity=0.293  Sum_probs=74.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC----------------------------cc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----------------------------SC  149 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~----------------------------~~  149 (278)
                      .++.++||||||+-..-...+..-+.+|+..|+++..++..++.++..+.                            ..
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            35779999999996554433433466899999999999877776543210                            11


Q ss_pred             e-EEEEccccCCcc-------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          150 I-KFLVDDVLDTKL-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       150 ~-~~~~~d~~~~~~-------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      | .++.+|+++.++       +.+||+|++...++...   .+.......++++.++|||||.|++...
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~---~d~~~y~~al~ni~~lLkpGG~Lil~~~  200 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC---KDLDEYRRALRNISSLLKPGGHLILAGV  200 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc---CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            3 367889987643       23599999987777654   3355777888999999999999999753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=2e-05  Score=62.79  Aligned_cols=115  Identities=17%  Similarity=0.266  Sum_probs=79.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---------CCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQF  166 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~f  166 (278)
                      .++..|+|+|+..|.++..+++. +. ..|+|+|+.|-.           ..+++.++++|++....         ..++
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~  112 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGAPV  112 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence            57889999999999999999988 32 259999997752           12569999999988641         2457


Q ss_pred             cEEEeCCccceec---cCCCChhh-HHHHHHHHHhcccCCcEEEEEec-CCChHHHHHHHhh
Q 023703          167 QLVMDKGTLDAIG---LHPDGPLK-RIMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSN  223 (278)
Q Consensus       167 D~v~~~~~~~~~~---~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~  223 (278)
                      |+|++.+.-..-.   .++..... ....+.-+..+|+|||.+++-.+ ....+.++..+..
T Consensus       113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~  174 (205)
T COG0293         113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR  174 (205)
T ss_pred             ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence            9999876542111   11111111 13445667789999999999874 4455666666653

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.25  E-value=1.6e-05  Score=63.70  Aligned_cols=103  Identities=17%  Similarity=0.253  Sum_probs=74.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v  169 (278)
                      .+.++.+||-+|..+|....+++.- | ...|+++++|+...+..-..++..  +|+--+..|+..+..    -+..|+|
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI  147 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVI  147 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEE
Confidence            3478899999999999999998886 3 237999999997766665555554  588889999987532    3578888


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++-.         .+.+...++.++...||+||.+++..
T Consensus       148 ~~DVa---------Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  148 FQDVA---------QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             EEE-S---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EecCC---------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            87311         23466667789999999999999863

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.24  E-value=9.3e-06  Score=69.22  Aligned_cols=102  Identities=15%  Similarity=0.264  Sum_probs=82.2

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceec
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  179 (278)
                      -...+|+|.|.|+.+..+... +.+|-++++....+-.++..+. .   .|+.+-+|++...|.  -|+|+..-+++++.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~~P~--~daI~mkWiLhdwt  250 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQDTPK--GDAIWMKWILHDWT  250 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C---CcceecccccccCCC--cCeEEEEeecccCC
Confidence            368999999999999999995 6689999999888877777664 3   377888998876433  35999876666554


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                           .++-.++|+++++.|+|||.+++.+...+
T Consensus       251 -----DedcvkiLknC~~sL~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  251 -----DEDCVKILKNCKKSLPPGGKIIVVENVTP  279 (342)
T ss_pred             -----hHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence                 67889999999999999999999876433

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=1.8e-05  Score=64.92  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=76.9

Q ss_pred             hhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc---CC
Q 023703           91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ER  164 (278)
Q Consensus        91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~---~~  164 (278)
                      +-......||.+||+-|+|+|.++..+++. + -.+++..|+...-.+.|.+-++..+++ ++++.+-|+....+   +.
T Consensus        97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~  176 (314)
T KOG2915|consen   97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL  176 (314)
T ss_pred             HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence            333456689999999999999999999887 2 238999999999999999999999885 49999999987543   35


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcE
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGL  204 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  204 (278)
                      .+|.|+.+-+         .+...   +-.+.++||.+|.
T Consensus       177 ~aDaVFLDlP---------aPw~A---iPha~~~lk~~g~  204 (314)
T KOG2915|consen  177 KADAVFLDLP---------APWEA---IPHAAKILKDEGG  204 (314)
T ss_pred             ccceEEEcCC---------Chhhh---hhhhHHHhhhcCc
Confidence            6777775433         22222   2456667887774

>PRK10742 putative methyltransferase; Provisional

Probab=98.23  E-value=5.4e-06  Score=67.92  Aligned_cols=84  Identities=14%  Similarity=0.107  Sum_probs=68.1

Q ss_pred             hccccCCCC--eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC------CC---cceEEEEccccCCc
Q 023703           93 ENDKYLSSW--SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------GF---SCIKFLVDDVLDTK  161 (278)
Q Consensus        93 ~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~------~~---~~~~~~~~d~~~~~  161 (278)
                      ...+++++.  +|||+.+|+|..+..++..|+ +|+++|-++.+....+.+++..      +.   .+++++++|..++-
T Consensus        80 kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L  158 (250)
T PRK10742         80 KAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (250)
T ss_pred             HHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence            334445555  899999999999999999997 5999999999999999988874      21   45888999987753


Q ss_pred             --cCCCccEEEeCCccce
Q 023703          162 --LERQFQLVMDKGTLDA  177 (278)
Q Consensus       162 --~~~~fD~v~~~~~~~~  177 (278)
                        ....||+|+..++|.+
T Consensus       159 ~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        159 TDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             hhCCCCCcEEEECCCCCC
Confidence              2357999999998865

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.22  E-value=1.7e-05  Score=72.45  Aligned_cols=126  Identities=18%  Similarity=0.209  Sum_probs=88.0

Q ss_pred             cccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C----CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccC
Q 023703           86 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD  159 (278)
Q Consensus        86 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~----~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~  159 (278)
                      ....++..+.. .+..+|.|..||+|.+....... +    ...++|.|+++.....|+.++-.+|+. ++....+|-..
T Consensus       174 v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~  252 (489)
T COG0286         174 VSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS  252 (489)
T ss_pred             HHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc
Confidence            33334444443 56679999999999887776654 1    136999999999999999999988875 35666776655


Q ss_pred             Ccc------CCCccEEEeCCccceecc------------------CCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          160 TKL------ERQFQLVMDKGTLDAIGL------------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       160 ~~~------~~~fD~v~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .+.      .++||.|++++++.....                  .+.....-..+++.+...|+|||+..++.++.
T Consensus       253 ~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         253 NPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             CCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            432      267999999999951110                  11222232678899999999998776654433

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.21  E-value=1.9e-07  Score=73.27  Aligned_cols=94  Identities=16%  Similarity=0.324  Sum_probs=71.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      .+.++||+|+|.|.++..++.. +.+|++++.|..|....++.- .+-+..+++.+.       +-+||+|.|...+|..
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~-ynVl~~~ew~~t-------~~k~dli~clNlLDRc  182 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN-YNVLTEIEWLQT-------DVKLDLILCLNLLDRC  182 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC-Cceeeehhhhhc-------CceeehHHHHHHHHhh
Confidence            4579999999999999999998 678999999999998887631 000011222222       3358999998888766


Q ss_pred             ccCCCChhhHHHHHHHHHhcccC-CcEEEEE
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAP-GGLLVIT  208 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~  208 (278)
                      .       +..++++.++.+|+| +|++++.
T Consensus       183 ~-------~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  183 F-------DPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             c-------ChHHHHHHHHHHhccCCCcEEEE
Confidence            5       677888999999999 8988774

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.21  E-value=1.5e-05  Score=63.14  Aligned_cols=115  Identities=12%  Similarity=0.144  Sum_probs=84.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC---ccCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~v~~~~~  174 (278)
                      .+|.+||++|-|.|.....+.+....+-+.++..|..++..+...-... .++.+..+-..+.   .+++.||-|+-.. 
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDT-  177 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYDT-  177 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeEeec-
Confidence            6788999999999999999988865678889999999999987653332 3566666655553   3467799887431 


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  220 (278)
                      |   .   +-.++...+.+.+.++|||+|++-+.....-.+.+...
T Consensus       178 y---~---e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~  217 (271)
T KOG1709|consen  178 Y---S---ELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYD  217 (271)
T ss_pred             h---h---hHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhh
Confidence            1   1   11346677779999999999999887765555554443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.18  E-value=2.7e-05  Score=59.56  Aligned_cols=103  Identities=31%  Similarity=0.480  Sum_probs=68.9

Q ss_pred             EEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC--CccC--CCccEEEeCCccc
Q 023703          103 VLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLE--RQFQLVMDKGTLD  176 (278)
Q Consensus       103 vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~--~~~~--~~fD~v~~~~~~~  176 (278)
                      ++|+|||+|... .+.....  ..++++|+++.+++.++......+...+.+...|...  .+..  ..||++.......
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            999999999965 3333311  3799999999999986555433211116788888776  4444  3799994333322


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +.        .....+.++.+.|+|+|.+++.......
T Consensus       131 ~~--------~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         131 LL--------PPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             cC--------CHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            21        1456669999999999999998765443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.18  E-value=7.2e-06  Score=69.28  Aligned_cols=104  Identities=16%  Similarity=0.239  Sum_probs=53.6

Q ss_pred             ccccCcccccccccccc---hhhhccccC----CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhh
Q 023703           73 SISQGHMLNHVEDLKSE---PVEENDKYL----SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLAN  143 (278)
Q Consensus        73 ~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~  143 (278)
                      .+..+.+.|....+...   +..++....    ...++||||||...+--.|..+  +. +++|+|+++.+++.|+++.+
T Consensus        69 diP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~  147 (299)
T PF05971_consen   69 DIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVE  147 (299)
T ss_dssp             ---TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHH
T ss_pred             cCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHH
Confidence            36667777666533222   222222221    2468999999999765444433  65 89999999999999999999


Q ss_pred             hC-CCcc-eEEEEccccCC----c--cCCCccEEEeCCccce
Q 023703          144 RD-GFSC-IKFLVDDVLDT----K--LERQFQLVMDKGTLDA  177 (278)
Q Consensus       144 ~~-~~~~-~~~~~~d~~~~----~--~~~~fD~v~~~~~~~~  177 (278)
                      .+ ++.+ |+++...-...    .  ..+.||+.+||++|..
T Consensus       148 ~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  148 RNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             HT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred             hccccccceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence            99 7754 88776532221    1  2468999999999854

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.18  E-value=7.7e-07  Score=79.04  Aligned_cols=101  Identities=19%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEE---eCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCCccc
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGV---DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD  176 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~---D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~~  176 (278)
                      ..+||+|||+|.++..|.+++. .+..+   |..+..++.|-+    .|++-+--..+. ..++ +++.||+|-|.....
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~~~s-~rLPfp~~~fDmvHcsrc~i  192 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGVLGS-QRLPFPSNAFDMVHCSRCLI  192 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhhhcc-ccccCCccchhhhhcccccc
Confidence            4789999999999999999953 22222   334445555544    344322111112 2333 468899999877653


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .  .+..+    ..++-++-|+|+|||.++++.+...
T Consensus       193 ~--W~~~~----g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  193 P--WHPND----GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             c--chhcc----cceeehhhhhhccCceEEecCCccc
Confidence            2  22222    2356789999999999999876543

; GO: 0008168 methyltransferase activity

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.16  E-value=7.1e-06  Score=62.30  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=51.2

Q ss_pred             eEEEEecCCCHHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703          102 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  160 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~  160 (278)
                      ++||+|||.|..+..++..+.. +++++|+++.+.+.++++++.++++++.+++..+.+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence            4899999999999999988543 7999999999999999999988877788888777653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.15  E-value=1.3e-05  Score=67.89  Aligned_cols=109  Identities=23%  Similarity=0.201  Sum_probs=70.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCcc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      .+.+|||+|||+|..+..+.+.  ...+++++|.|+.+++.++..+....-.. .........+...-.+.|+|++..++
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L  112 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL  112 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence            4569999999999876665553  34589999999999999998776442111 11111111111112334999998887


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ..+.    + .....+++.+.+.+.+  .|+++++..+.
T Consensus       113 ~EL~----~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~  144 (274)
T PF09243_consen  113 NELP----S-AARAELVRSLWNKTAP--VLVLVEPGTPA  144 (274)
T ss_pred             hcCC----c-hHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence            6664    2 4666777777776666  77777655443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.15  E-value=9.3e-06  Score=69.43  Aligned_cols=86  Identities=15%  Similarity=0.166  Sum_probs=63.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.++||+||++|.++..+.++|. +|++||..+-.     ..+...  ++|.....|.....+ .+.+|+++|+.+- 
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmve-  280 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMVE-  280 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhCC--CCEEEEeccCcccCCCCCCCCEEEEeccc-
Confidence            5788999999999999999999986 89999966522     112122  468889999887765 6789999986542 


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPG  202 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~Lkpg  202 (278)
                                .+...++-+.+.|..|
T Consensus       281 ----------~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        281 ----------KPARVAELMAQWLVNG  296 (357)
T ss_pred             ----------CHHHHHHHHHHHHhcC
Confidence                      3334446677777665

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.13  E-value=4.9e-05  Score=64.67  Aligned_cols=74  Identities=16%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc------CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------~~~fD~v~  170 (278)
                      .++..++|.-||.|..+..++.. +..+|+|+|.++.+++.++++++..+ .++.+++++..+...      ..++|.|+
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl   97 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGIL   97 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence            56789999999999999999886 33589999999999999999887653 468899988876531      24578777


Q ss_pred             eC
Q 023703          171 DK  172 (278)
Q Consensus       171 ~~  172 (278)
                      .+
T Consensus        98 ~D   99 (305)
T TIGR00006        98 VD   99 (305)
T ss_pred             Ee
Confidence            54

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.12  E-value=7.7e-06  Score=68.83  Aligned_cols=75  Identities=25%  Similarity=0.303  Sum_probs=63.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCC----CccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER----QFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~----~fD~v~~~~  173 (278)
                      .++..|||+|+|.|.++..|++.+ ++++++|+++..++..++++...  ++++++.+|+.++....    ....|++|-
T Consensus        29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~--~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl  105 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN--PNVEVINGDFLKWDLYDLLKNQPLLVVGNL  105 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC--SSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred             CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc--ccceeeecchhccccHHhhcCCceEEEEEe
Confidence            367899999999999999999997 69999999999999999987633  57999999999986543    566888877


Q ss_pred             cc
Q 023703          174 TL  175 (278)
Q Consensus       174 ~~  175 (278)
                      ++
T Consensus       106 Py  107 (262)
T PF00398_consen  106 PY  107 (262)
T ss_dssp             TG
T ss_pred             cc
Confidence            76

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.12  E-value=2.3e-06  Score=70.66  Aligned_cols=103  Identities=19%  Similarity=0.248  Sum_probs=79.3

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCCcc-CCCccEEEe
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL-ERQFQLVMD  171 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~~~-~~~fD~v~~  171 (278)
                      +.....+..++|+|||.|..+..-   +...++|+|++...+..+++       .+. ....+|+...+. +.+||.+++
T Consensus        40 l~~~~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~-------~~~~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   40 LDSQPTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKR-------SGGDNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             HhccCCcceeeecccCCcccCcCC---Ccceeeecchhhhhcccccc-------CCCceeehhhhhcCCCCCCccccchh
Confidence            334455789999999998654221   22369999999999988875       233 678899988775 688999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..+++|+.    .......+++++.++|+|||..++...
T Consensus       110 iavihhls----T~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  110 IAVIHHLS----TRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             hhhhhhhh----hHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            99988875    344667888999999999999877643

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=3e-05  Score=62.69  Aligned_cols=97  Identities=19%  Similarity=0.175  Sum_probs=73.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc---CCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL---ERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~---~~~fD~v~~~~  173 (278)
                      .++..+||+|+-||.|+..+.++|+++|+++|..-..+..--++    . ++ +.+...|+....+   .+..|++++.-
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv  152 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPEDFTEKPDLIVIDV  152 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence            57889999999999999999999999999999988766543321    1 34 4556667766543   35778999876


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|-          ....+|..+..+++|+|.++...
T Consensus       153 SFI----------SL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         153 SFI----------SLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             ehh----------hHHHHHHHHHHhcCCCceEEEEe
Confidence            653          44566688999999999877754

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.02  E-value=2.1e-05  Score=59.76  Aligned_cols=74  Identities=23%  Similarity=0.404  Sum_probs=55.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhh-----CCCCcEEEEeCChHHHHHHHHHhhhCC--C-cceEEEEccccCCccCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSK-----QGFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~~~D~s~~~i~~a~~~~~~~~--~-~~~~~~~~d~~~~~~~~~fD~v  169 (278)
                      .+..+|+|+|||.|.++..++.     ....+|+++|.++..++.+.++.+..+  . .++.+..++..+.......+++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL  103 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence            5677999999999999999999     533489999999999999999988776  3 3466666666544334445555


Q ss_pred             Ee
Q 023703          170 MD  171 (278)
Q Consensus       170 ~~  171 (278)
                      +.
T Consensus       104 vg  105 (141)
T PF13679_consen  104 VG  105 (141)
T ss_pred             EE
Confidence            54

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.00  E-value=5.7e-05  Score=63.28  Aligned_cols=107  Identities=27%  Similarity=0.378  Sum_probs=64.6

Q ss_pred             CCeEEEEecCCCHHHHH-HhhC-C-CCcEEEEeCChHHHHHHHHHhh-hCCCc-ceEEEEccccCCccC-CCccEEEeCC
Q 023703          100 SWSVLDIGTGNGLLLQE-LSKQ-G-FSDLTGVDYSEDAINLAQSLAN-RDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG  173 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~-l~~~-~-~~~v~~~D~s~~~i~~a~~~~~-~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~  173 (278)
                      +.+|+=||||.=-++.. +++. + ...|+++|+++.+++.+++... ..++. ++.|+.+|..+...+ ..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            46999999998766554 4433 3 2479999999999999998877 33443 599999999876543 6899998654


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ...      ...+....++.++.+.++||..+++-+.+.
T Consensus       201 lVg------~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G  233 (276)
T PF03059_consen  201 LVG------MDAEPKEEILEHLAKHMAPGARLVVRSAHG  233 (276)
T ss_dssp             T-S----------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred             hcc------cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence            321      112355678899999999999999985543

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.99  E-value=1e-05  Score=68.39  Aligned_cols=120  Identities=18%  Similarity=0.103  Sum_probs=89.0

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHH-------HHHHHhhhCCCcc--eEEEEccccCC
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN-------LAQSLANRDGFSC--IKFLVDDVLDT  160 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~-------~a~~~~~~~~~~~--~~~~~~d~~~~  160 (278)
                      +........+|.-|.|...|||.+....+..|. -|+|.||+-.++.       ..+.|+++.|...  +.+..+|....
T Consensus       199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~  277 (421)
T KOG2671|consen  199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP  277 (421)
T ss_pred             HHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc
Confidence            344445668999999999999999999999985 8999999988877       3467888887543  77888998876


Q ss_pred             cc--CCCccEEEeCCccceec--------------------cCCCCh------hhHHHHHHHHHhcccCCcEEEEEec
Q 023703          161 KL--ERQFQLVMDKGTLDAIG--------------------LHPDGP------LKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       161 ~~--~~~fD~v~~~~~~~~~~--------------------~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +.  ...||.|+|.+++..=.                    .|.+..      .-...++.-..+.|..||++++--+
T Consensus       278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            54  57899999999884110                    011111      1113555778899999999998765

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.99  E-value=2.7e-05  Score=62.20  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=68.3

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEEEeCCccc
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKGTLD  176 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~~~~~  176 (278)
                      .++|||||=+......-  .+.-.|+.||+++.               .-.+.+.|+.+.+.    .++||+|.+.-+++
T Consensus        53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN  115 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN  115 (219)
T ss_pred             ceEEeecccCCCCcccc--cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence            69999999765544332  23236999999763               23456788877643    47899999988887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcE-----EEEEecCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGL-----LVITSCNS  212 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~  212 (278)
                      .++    ++..+-.++.++.+.|+|+|.     ++++.+.+
T Consensus       116 fVP----~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen  116 FVP----DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP  152 (219)
T ss_pred             eCC----CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence            764    566888999999999999999     88886544

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=0.0001  Score=57.96  Aligned_cols=102  Identities=18%  Similarity=0.288  Sum_probs=77.9

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM  170 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~  170 (278)
                      .+.++.+||-+|+.+|....+++.- |...++++++|+......-..++..  +|+--+..|+..+.    .-+..|+|+
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy  150 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIY  150 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEE
Confidence            3478999999999999999999887 4347999999998777666655554  57888999998753    135577777


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ..         -..+.+..-+..++...||+||.+++.
T Consensus       151 ~D---------VAQp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         151 QD---------VAQPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             Ee---------cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence            53         223446666779999999999977775

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.87  E-value=0.00064  Score=55.40  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~  173 (278)
                      ..|++||-+|=..-. ++.++. ...++|+.+|+++..++..++.++..|++ ++.++.|+...-+   .++||+++.++
T Consensus        43 L~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDP  120 (243)
T PF01861_consen   43 LEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDP  120 (243)
T ss_dssp             STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE--
T ss_pred             ccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCC
Confidence            578899999855542 333332 33469999999999999999999999985 9999999998643   48999999988


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCc-EEEEE
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGG-LLVIT  208 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~  208 (278)
                      ++-        ......++.+....||..| ..++.
T Consensus       121 PyT--------~~G~~LFlsRgi~~Lk~~g~~gy~~  148 (243)
T PF01861_consen  121 PYT--------PEGLKLFLSRGIEALKGEGCAGYFG  148 (243)
T ss_dssp             -SS--------HHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred             CCC--------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence            763        3467788899999999777 44443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.85  E-value=3.9e-05  Score=67.59  Aligned_cols=100  Identities=24%  Similarity=0.307  Sum_probs=74.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCc--cCCCccEEEeC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTK--LERQFQLVMDK  172 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~--~~~~fD~v~~~  172 (278)
                      .+.+|||.-+|+|.=++..+..  +..+|+.-|+|+.+++..++|++.++++.  +++.+.|+...-  ....||+|=.+
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD  128 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD  128 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence            4468999999999888777776  45689999999999999999999999875  788888987654  46778876432


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       +|        +  ....++..+.+.++.||.+.++.
T Consensus       129 -Pf--------G--Sp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  129 -PF--------G--SPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             --S--------S----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CC--------C--CccHhHHHHHHHhhcCCEEEEec
Confidence             22        2  55677899999999999999973

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.82  E-value=7.5e-05  Score=61.13  Aligned_cols=82  Identities=20%  Similarity=0.161  Sum_probs=63.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ...++.+|+|||||.--++..+.... ...++|+|++..+++....-+...+. +.++...|+....+....|+.+..-+
T Consensus       102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~DlaLllK~  180 (251)
T PF07091_consen  102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLALLLKT  180 (251)
T ss_dssp             CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEEEEET-
T ss_pred             cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchhhHHHH
Confidence            33457899999999999999877763 34899999999999999999888874 68888889988878888999998776


Q ss_pred             ccee
Q 023703          175 LDAI  178 (278)
Q Consensus       175 ~~~~  178 (278)
                      +..+
T Consensus       181 lp~l  184 (251)
T PF07091_consen  181 LPCL  184 (251)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=6.8e-05  Score=64.39  Aligned_cols=98  Identities=21%  Similarity=0.260  Sum_probs=75.3

Q ss_pred             CCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCccc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD  176 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~  176 (278)
                      +.+|||.-||+|.=++..+.. +..+|+.-|+||.+++.+++|+..+...+...++.|+...-.  ...||+|=      
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID------  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID------  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe------
Confidence            679999999999988888877 444899999999999999999999844566677777765433  25666552      


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                         ++|.+  ....|+..+.+.++.||++.++
T Consensus       127 ---iDPFG--SPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         127 ---IDPFG--SPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             ---cCCCC--CCchHHHHHHHHhhcCCEEEEE
Confidence               23322  4455678899999999999886

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.81  E-value=0.00014  Score=56.87  Aligned_cols=115  Identities=14%  Similarity=0.164  Sum_probs=75.1

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHH----HH--HHHHHhhhCCCcceEEEEccccCCccCCCc
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDA----IN--LAQSLANRDGFSCIKFLVDDVLDTKLERQF  166 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~----i~--~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f  166 (278)
                      .+++++.+|+|+-.|.|.++..++.. |. ..|++.-..+..    .+  ..+.........|++.+..+...+.+.+..
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~  123 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL  123 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence            45578999999999999999999886 32 156665443331    11  111111122334566666666666566778


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+++.+..++.+..-...+.....+...+.+.|||||.+++.+
T Consensus       124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            8888776665554322334455666799999999999999875

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.80  E-value=1.4e-05  Score=57.48  Aligned_cols=97  Identities=25%  Similarity=0.322  Sum_probs=42.2

Q ss_pred             EEEecCCCHHHHHHhhC----CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc--c-CCCccEEEeCCcc
Q 023703          104 LDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--L-ERQFQLVMDKGTL  175 (278)
Q Consensus       104 LDiGcG~G~~~~~l~~~----~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~--~-~~~fD~v~~~~~~  175 (278)
                      ||+|+..|..+..+++.    +..+++++|..+. .+.+++.++..++ .+++++.++..+..  . .++||+++..+.-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH   79 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence            68999999988887764    1127999999995 2333333333333 35999999987642  2 3789999876531


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                        -      .......++.+.+.|+|||++++-+
T Consensus        80 --~------~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   80 --S------YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             --C------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence              1      1255566788999999999998754

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=0.0011  Score=57.01  Aligned_cols=127  Identities=14%  Similarity=0.017  Sum_probs=85.1

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhCCC---C--cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQGF---S--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------  161 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~--~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------  161 (278)
                      ++....|+.+|||+++..|.=+..+.+..+   .  .|++-|.++.-+...+...+....+++.+...|+...+      
T Consensus       149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~  228 (375)
T KOG2198|consen  149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD  228 (375)
T ss_pred             hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence            345668999999999999988877766521   1  69999999998888887776655445555555554432      


Q ss_pred             ----cCCCccEEEeCCccce--eccCC--------------CChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          162 ----LERQFQLVMDKGTLDA--IGLHP--------------DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       162 ----~~~~fD~v~~~~~~~~--~~~~~--------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                          ....||-|++.-+-..  ..-+.              .=+.-...++.+..++||+||.++.++|+-+..+...
T Consensus       229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEa  306 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEA  306 (375)
T ss_pred             CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHH
Confidence                1246888887532210  00000              0112335778999999999999999998776654443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.75  E-value=0.0003  Score=52.63  Aligned_cols=89  Identities=13%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             cEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc--C-CCccEEEeCCccceeccCC----CChhhHHHHHHHH
Q 023703          124 DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL--E-RQFQLVMDKGTLDAIGLHP----DGPLKRIMYWDSV  195 (278)
Q Consensus       124 ~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~--~-~~fD~v~~~~~~~~~~~~~----~~~~~~~~~l~~~  195 (278)
                      +|+|+|+-+.+++.++++++..++.+ +++++.+-..+..  + +++|+++-|--+  ++-..    -.+......++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY--LPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY--LPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB---CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc--CCCCCCCCCcCcHHHHHHHHHH
Confidence            58999999999999999999988754 9999988777642  3 489988876332  22111    1234567888999


Q ss_pred             HhcccCCcEEEEEecCCCh
Q 023703          196 SKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       196 ~~~LkpgG~l~~~~~~~~~  214 (278)
                      .+.|+|||++.++......
T Consensus        79 l~lL~~gG~i~iv~Y~GH~   97 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHP   97 (140)
T ss_dssp             HHHEEEEEEEEEEE--STC
T ss_pred             HHhhccCCEEEEEEeCCCC
Confidence            9999999999998765444

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.74  E-value=0.00088  Score=56.25  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=58.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc------CCCccE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQL  168 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------~~~fD~  168 (278)
                      ..+++..+|.--|.|..+..+....  ..+++|+|.++.+++.|++++...+ +++.+++.+..+...      .+++|-
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDG   99 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDG   99 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence            3567899999999999999999883  2479999999999999999998766 578999887765421      245665


Q ss_pred             EE
Q 023703          169 VM  170 (278)
Q Consensus       169 v~  170 (278)
                      |+
T Consensus       100 iL  101 (314)
T COG0275         100 IL  101 (314)
T ss_pred             EE
Confidence            55

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=0.00064  Score=52.93  Aligned_cols=109  Identities=20%  Similarity=0.214  Sum_probs=69.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-cccCCc---------cCCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTK---------LERQ  165 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~~~~---------~~~~  165 (278)
                      .|+.+|||+||..|.++....++  +...|.|+|+-.-           .....+.++++ |+.+..         +..+
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~  136 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP  136 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence            57899999999999999988887  2347999998322           11234566666 776642         3467


Q ss_pred             ccEEEeCCccceeccCCCChhhHH----HHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRI----MYWDSVSKLVAPGGLLVITSCNSTKDEL  217 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~LkpgG~l~~~~~~~~~~~~  217 (278)
                      .|+|++...-..-.....+.....    ..+.-....++|+|.+++-......+..
T Consensus       137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~  192 (232)
T KOG4589|consen  137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL  192 (232)
T ss_pred             ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH
Confidence            999998755433222111111221    2223345667899999998866555433

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.67  E-value=0.00024  Score=55.95  Aligned_cols=124  Identities=12%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC-------CcceEEEEccccCCccC--CC---
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------FSCIKFLVDDVLDTKLE--RQ---  165 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~-------~~~~~~~~~d~~~~~~~--~~---  165 (278)
                      +...+.|||||-|.+...|+.. +..-++|.+|--...+..+.+.....       +.|+.+...+.....+.  .+   
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            3457999999999999999998 44579999998888888888776554       45677777776654321  11   


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe-cCCChHHHHHHHh
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEVS  222 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~  222 (278)
                      .-..++.+.-+.-.-......-...++.+..=+|++||.++..+ .-...+.+...++
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e  197 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLE  197 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHH
Confidence            11111111110000000111122356688888999999998775 3334444444444

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.62  E-value=0.00037  Score=57.89  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=67.7

Q ss_pred             CeEEEEecCCC--HHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCcc--
Q 023703          101 WSVLDIGTGNG--LLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ--  167 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~fD--  167 (278)
                      .-.||||||-=  ...-.+++.  +.++|+-+|.+|..+..++..+....-....++++|+.+...       .+-+|  
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            36999999954  344455554  446999999999999999998876632238899999988531       12233  


Q ss_pred             ---EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          168 ---LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       168 ---~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                         .++..++++++.    +..+...+++.++..|.||..|+++.....
T Consensus       150 rPVavll~~vLh~v~----D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  150 RPVAVLLVAVLHFVP----DDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             S--EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CCeeeeeeeeeccCC----CccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence               456667776663    234667788999999999999999976554

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.58  E-value=0.00063  Score=54.15  Aligned_cols=110  Identities=17%  Similarity=0.218  Sum_probs=68.2

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhh-------------------------------
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANR-------------------------------  144 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~-------------------------------  144 (278)
                      .+.++.|.+||+|.+...+.-.   ....|+|.|+++.+++.|++|+..                               
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4568999999999887765543   235899999999999999988721                               


Q ss_pred             ----------C-CCcceEEEEccccCCcc------CCCccEEEeCCccceeccCCCC---hhhHHHHHHHHHhcccCCcE
Q 023703          145 ----------D-GFSCIKFLVDDVLDTKL------ERQFQLVMDKGTLDAIGLHPDG---PLKRIMYWDSVSKLVAPGGL  204 (278)
Q Consensus       145 ----------~-~~~~~~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~  204 (278)
                                . +.....+.+.|+++...      ....|+|+..-++..+. ++.+   ......++..+..+|.++++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t-~W~g~~~~~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT-SWQGEGSGGPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS-STTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc-cccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence                      1 22246788999988532      33469999988886664 3222   34556888999999965566


Q ss_pred             EEEEe
Q 023703          205 LVITS  209 (278)
Q Consensus       205 l~~~~  209 (278)
                      +.++.
T Consensus       210 V~v~~  214 (246)
T PF11599_consen  210 VAVSD  214 (246)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            65543

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.57  E-value=0.00011  Score=59.04  Aligned_cols=104  Identities=13%  Similarity=0.240  Sum_probs=69.2

Q ss_pred             cccCccccccccc---ccchhhhcc---c--cCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhh
Q 023703           74 ISQGHMLNHVEDL---KSEPVEEND---K--YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLAN  143 (278)
Q Consensus        74 ~~~~~~~~~~~~~---~~~~~~~~~---~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~  143 (278)
                      +..+.+.|....+   ...+..++.   .  ..++.++||||.|...+--.+-.+  |. +.+|.|+++.+++.|+.+..
T Consensus        45 iPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~  123 (292)
T COG3129          45 IPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIIS  123 (292)
T ss_pred             CCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHH
Confidence            5566665555432   222333321   1  135678999999988765555444  65 89999999999999999998


Q ss_pred             hC-CCcc-eEEEEccccCCc------cCCCccEEEeCCcccee
Q 023703          144 RD-GFSC-IKFLVDDVLDTK------LERQFQLVMDKGTLDAI  178 (278)
Q Consensus       144 ~~-~~~~-~~~~~~d~~~~~------~~~~fD~v~~~~~~~~~  178 (278)
                      .+ ++.+ ++++...-.+..      ..+.||+..||++|+.-
T Consensus       124 ~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         124 ANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             cCcchhhheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence            87 5543 666554333321      24789999999999643

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.56  E-value=0.0022  Score=51.47  Aligned_cols=115  Identities=18%  Similarity=0.141  Sum_probs=84.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc-cCCCccEEEeCCcc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLVMDKGTL  175 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~~~  175 (278)
                      .+.++.||||-.+.+...+...+ +..+++.|+++..++.|.+++..+++.. ++...+|....- .+..+|+++-.+. 
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM-   94 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM-   94 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence            45569999999999999999984 5689999999999999999999988754 888889986543 3457888775432 


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                              +-.....++++-.+-|+.--.+++ .|+.....+++.+..
T Consensus        95 --------GG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~~  133 (226)
T COG2384          95 --------GGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLSA  133 (226)
T ss_pred             --------cHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHHh
Confidence                    122445666777777665434444 466666666666553

>PHA01634 hypothetical protein

Probab=97.50  E-value=0.0006  Score=49.57  Aligned_cols=48  Identities=10%  Similarity=-0.020  Sum_probs=44.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  146 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~  146 (278)
                      .+++|+|||.+-|..++.++.+|++.|++++.++...+..+++.+.+.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            678999999999999999999999999999999999999999887664

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.49  E-value=0.0015  Score=52.88  Aligned_cols=103  Identities=16%  Similarity=0.192  Sum_probs=71.2

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v  169 (278)
                      +++++.+||-+|+++|....++..- |. .-|++++.|+..=...-..+++.  +||--+..|+..+..    -.-.|+|
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmVDvI  230 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMVDVI  230 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeEEEE
Confidence            3589999999999999988888876 32 26999999986655444443333  577778888876421    1344555


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++         +-..+.+...+.-++.-.||+||-++++.
T Consensus       231 Fa---------Dvaqpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  231 FA---------DVAQPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             ec---------cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence            54         22333444445567888999999999974

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.34  E-value=0.0029  Score=52.94  Aligned_cols=130  Identities=18%  Similarity=0.267  Sum_probs=94.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhC--CC--cceEEEEccccCCc---cCCCccE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK---LERQFQL  168 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~--~~--~~~~~~~~d~~~~~---~~~~fD~  168 (278)
                      ...+++||-||-|.|......+.+. ..++.-+|++...++..++.+...  |.  +++.+.-+|...+-   ..++||+
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV  198 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV  198 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence            3456799999999999999998883 348999999999999998876543  22  45888899887642   2688999


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe-cCCChHHHHHHHhhhhhccc
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS-CNSTKDELVHEVSNLSQRRI  229 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~~~~~~  229 (278)
                      |+....= -  ..+....-...+++.+.+.||+||+++... +-+-...+.+...+++...+
T Consensus       199 ii~dssd-p--vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f  257 (337)
T KOG1562|consen  199 IITDSSD-P--VGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIF  257 (337)
T ss_pred             EEEecCC-c--cchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhc
Confidence            9864220 0  011112234577789999999999988864 66677777777777775544

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.00021  Score=54.24  Aligned_cols=118  Identities=15%  Similarity=0.167  Sum_probs=76.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCC---cceEEEEccccCCc---cCCCccEEE
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTK---LERQFQLVM  170 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~---~~~~fD~v~  170 (278)
                      .+.+||++|.|--.++-.+...  ....|..+|-++.+++..++....+..   ..+.....+.....   ...+||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            5679999999976665555444  345899999999999998887655421   22222222222211   235899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC--ChHHHHHHHhh
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS--TKDELVHEVSN  223 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~  223 (278)
                      +...+- +      .+....+.+.++..|+|.|..++.++-.  +.+.+...+..
T Consensus       109 aADClF-f------dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~  156 (201)
T KOG3201|consen  109 AADCLF-F------DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGT  156 (201)
T ss_pred             eccchh-H------HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHh
Confidence            865431 1      2355667799999999999988876533  33444444443

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.00076  Score=56.70  Aligned_cols=101  Identities=21%  Similarity=0.285  Sum_probs=63.9

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-------------------------------
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-------------------------------  148 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-------------------------------  148 (278)
                      ..+||-.|||.|+++..++..|+ .+-|-++|--|+=...-.+..-..+                               
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            45899999999999999999987 5777788776653332222100000                               


Q ss_pred             ---------ceEEEEccccCCcc----CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          149 ---------CIKFLVDDVLDTKL----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       149 ---------~~~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                               +...-.+|..+...    .+.||+|+..--+       +.......+++.+..+|||||..+=.
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-------DTa~NileYi~tI~~iLk~GGvWiNl  295 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-------DTAHNILEYIDTIYKILKPGGVWINL  295 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-------echHHHHHHHHHHHHhccCCcEEEec
Confidence                     11112234433221    1357777754222       23457889999999999999987754

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.0015  Score=48.90  Aligned_cols=105  Identities=14%  Similarity=0.232  Sum_probs=73.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccC-CCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~~  175 (278)
                      .+..+.+|+|+|.|++....+++|....+|++++|-.+..++-+.-..|+. ...|..-|+.+.... -.+-+|+.... 
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes-  149 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES-  149 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH-
Confidence            455689999999999999999998668999999999999998887777764 478888888775542 22223332211 


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                       .+.       +..   .++..-+..+..++.+-+.-+.
T Consensus       150 -~m~-------dLe---~KL~~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  150 -VMP-------DLE---DKLRTELPANTRVVACRFPLPT  177 (199)
T ss_pred             -HHh-------hhH---HHHHhhCcCCCeEEEEecCCCc
Confidence             111       111   4566567778888877655443

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.22  E-value=0.00081  Score=57.32  Aligned_cols=75  Identities=12%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCccE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQL  168 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~fD~  168 (278)
                      ..++..++|.--|.|..+..+++. +..+++|+|.++.+++.+++++.... +++.+++++..+...       ..++|.
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~~~~~~dg   96 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELNGINKVDG   96 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHccCCCccCE
Confidence            456779999999999999999987 33699999999999999998887553 468999998876531       246777


Q ss_pred             EEeC
Q 023703          169 VMDK  172 (278)
Q Consensus       169 v~~~  172 (278)
                      |+..
T Consensus        97 iL~D  100 (310)
T PF01795_consen   97 ILFD  100 (310)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7743

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.21  E-value=0.00017  Score=60.16  Aligned_cols=96  Identities=16%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             CCCCeEEEEecCCCHHHH-HHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~-~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..+..|.|+-+|-|.++. .+...|++.|.++|.+|.+++..+++++.+++.. ..++.+|-....+....|-|..-   
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG---  269 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG---  269 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec---
Confidence            456789999999999999 6777788899999999999999999999887643 56677787776666666666531   


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcE
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGL  204 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  204 (278)
                          +-|...    +-+-.+.++|||.|-
T Consensus       270 ----LlPSse----~~W~~A~k~Lk~egg  290 (351)
T KOG1227|consen  270 ----LLPSSE----QGWPTAIKALKPEGG  290 (351)
T ss_pred             ----cccccc----cchHHHHHHhhhcCC
Confidence                112111    222456777887654

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=97.21  E-value=0.00045  Score=52.46  Aligned_cols=107  Identities=20%  Similarity=0.283  Sum_probs=70.8

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCC--ccCCCccEEEeCCccc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDT--KLERQFQLVMDKGTLD  176 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~--~~~~~fD~v~~~~~~~  176 (278)
                      +++++-+|+..=..-....++|+++|..+|.++--++.--+       +++ ++...|....  ...++||.+.+..+++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~-------dr~ssi~p~df~~~~~~y~~~fD~~as~~siE   74 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR-------DRLSSILPVDFAKNWQKYAGSFDFAASFSSIE   74 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc-------cccccccHHHHHHHHHHhhccchhhheechhc
Confidence            46788888887777666777788899999987632221100       111 1222233221  1357899999999999


Q ss_pred             eecc----CCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      |+.+    +|.++..-...+.++.++|||||.+++..+-.+
T Consensus        75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   75 HFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             cccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            9865    344444445556889999999999999987664

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.09  E-value=0.0014  Score=55.52  Aligned_cols=71  Identities=15%  Similarity=0.163  Sum_probs=56.9

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCCcccee
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAI  178 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~~~~~~  178 (278)
                      +|+|+.||.|.++..+.+.|+..+.++|+++.+++..+.|+..     . ++.+|+.+...   ...+|+++...+...+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f   75 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF   75 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence            6999999999999999988887899999999999999888632     1 45677776543   3579999987766544

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.02  E-value=0.0024  Score=52.18  Aligned_cols=76  Identities=24%  Similarity=0.249  Sum_probs=47.5

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh---hC-CC-----cceEEEEccccCCc--cCCCccEE
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN---RD-GF-----SCIKFLVDDVLDTK--LERQFQLV  169 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~---~~-~~-----~~~~~~~~d~~~~~--~~~~fD~v  169 (278)
                      .+|||.-+|-|.-+..++..|+ +|+++|-||......+.-++   .. ..     .+++++++|..+.-  .+.+||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            4899999999999999998886 89999999987666554332   22 11     36999999998853  36789999


Q ss_pred             EeCCccce
Q 023703          170 MDKGTLDA  177 (278)
Q Consensus       170 ~~~~~~~~  177 (278)
                      +..+.|.+
T Consensus       156 Y~DPMFp~  163 (234)
T PF04445_consen  156 YFDPMFPE  163 (234)
T ss_dssp             EE--S---
T ss_pred             EECCCCCC
Confidence            99888754

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.02  E-value=0.0012  Score=57.99  Aligned_cols=60  Identities=28%  Similarity=0.449  Sum_probs=51.4

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCC
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT  160 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~  160 (278)
                      ..|||||+|||.++...++.|+..|++++.-..|.+.|++....+|.+ +|.++...-.+.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev  128 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV  128 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence            368999999999999999998779999999999999999999999875 377776555544

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.96  E-value=0.0019  Score=52.00  Aligned_cols=103  Identities=21%  Similarity=0.272  Sum_probs=75.4

Q ss_pred             CeEEEEecCCCHHHHHHhhC--------CC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------c
Q 023703          101 WSVLDIGTGNGLLLQELSKQ--------GF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L  162 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~--------~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--------~  162 (278)
                      .+++|+++..|.++..|.++        +.  ..|+++|+-+-           ..++.+..+++|++...        +
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf  111 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF  111 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence            58999999999999988775        11  13999998553           23356888999998863        2


Q ss_pred             -CCCccEEEeCCccceeccCCCCh----hhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          163 -ERQFQLVMDKGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                       .++.|+|+|.+.-|...+|..+.    .-....|.-...+|||||.|+.-.+-...
T Consensus       112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~  168 (294)
T KOG1099|consen  112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD  168 (294)
T ss_pred             CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence             35899999999888777765443    22235556677899999999987654443

>PRK11524 putative methyltransferase; Provisional

Probab=96.92  E-value=0.0021  Score=54.79  Aligned_cols=46  Identities=15%  Similarity=0.091  Sum_probs=42.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR  144 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~  144 (278)
                      .+|..|||..||+|..+.+..+.| ++.+|+|++++.++.|++++..
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence            688999999999999999999886 6899999999999999999753

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.92  E-value=0.0061  Score=52.66  Aligned_cols=95  Identities=18%  Similarity=0.245  Sum_probs=65.0

Q ss_pred             ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc-ccCCc-cCCCccEEEe
Q 023703           96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLDTK-LERQFQLVMD  171 (278)
Q Consensus        96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d-~~~~~-~~~~fD~v~~  171 (278)
                      +..|+.+|+-+|+| .|..+..+++. | ++|+++|.|+.-.+.|++.-.      -.++... ..... ..+.||+|+.
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA------d~~i~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA------DHVINSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC------cEEEEcCCchhhHHhHhhCcEEEE
Confidence            45788999999987 33667777774 7 599999999999999987532      1233322 11111 1234999987


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .-+ .             ..+....+.|++||++++....
T Consensus       236 tv~-~-------------~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         236 TVG-P-------------ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             CCC-h-------------hhHHHHHHHHhcCCEEEEECCC
Confidence            543 2             1237788999999999998654

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.0026  Score=54.41  Aligned_cols=112  Identities=21%  Similarity=0.252  Sum_probs=70.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcccc----CCccCCCccEEEeC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL----DTKLERQFQLVMDK  172 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~----~~~~~~~fD~v~~~  172 (278)
                      .+.+|||+|.|.|....++-.. + ...++.++.|+..-+...................|+.    +++....|++++..
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~  192 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL  192 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence            4567999999999877666554 2 2478888888876666554443222222233333333    23334567777754


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      .-+    ++.........+++.+..++.|||.+++++...+.
T Consensus       193 ~eL----l~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~  230 (484)
T COG5459         193 DEL----LPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA  230 (484)
T ss_pred             hhh----ccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence            332    22233334455789999999999999999876654

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.85  E-value=0.0052  Score=49.19  Aligned_cols=101  Identities=18%  Similarity=0.264  Sum_probs=54.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-----CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc---------C
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL---------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~---------~  163 (278)
                      ++..|+|+|.-.|..+..+|..     +..+|+|+|++.........  +.... ++|+++++|..+...         .
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            5679999999999888777652     33599999996443322211  11111 469999999987531         1


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ....+|+....  |.      .......|+....++++|+++++.+
T Consensus       110 ~~~vlVilDs~--H~------~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  110 PHPVLVILDSS--HT------HEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             -SSEEEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             CCceEEEECCC--cc------HHHHHHHHHHhCccCCCCCEEEEEe
Confidence            23446665432  11      1144555677899999999999864

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK13699 putative methylase; Provisional

Probab=96.73  E-value=0.0042  Score=51.07  Aligned_cols=47  Identities=19%  Similarity=0.117  Sum_probs=42.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  145 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~  145 (278)
                      .++..|||..||+|..+....+.| .+.+|+|+++...+.+.++++..
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHH
Confidence            578899999999999999999887 58999999999999999988653

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.72  E-value=0.019  Score=47.66  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=84.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEe
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMD  171 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~  171 (278)
                      +...|+.|+-+| -.-..+++++-.+ +.+|..+|+++..++.-.+-++..|+.|++.+.-|+.++-+   .++||+.+.
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT  227 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT  227 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec
Confidence            345778899999 4445555555543 45899999999999999999999999889999999998654   478999988


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCC---cEEEEEecCCChHHH
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG---GLLVITSCNSTKDEL  217 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~~  217 (278)
                      .++. .+.       ....++.+-...||.-   |++.++....+....
T Consensus       228 DPpe-Ti~-------alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW  268 (354)
T COG1568         228 DPPE-TIK-------ALKLFLGRGIATLKGEGCAGYFGITRRESSIDKW  268 (354)
T ss_pred             Cchh-hHH-------HHHHHHhccHHHhcCCCccceEeeeeccccHHHH
Confidence            7654 222       5566777777778766   778777666555433

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.69  E-value=0.0026  Score=51.98  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=35.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHH
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS  140 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~  140 (278)
                      .++..|||..||+|..+.+....| ++.+|+|+++..++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence            578899999999999999999987 589999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.65  E-value=0.00092  Score=59.58  Aligned_cols=104  Identities=23%  Similarity=0.294  Sum_probs=79.3

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc-----cCCCc
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-----LERQF  166 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~-----~~~~f  166 (278)
                      ....++.+|||.-|++|.-++..+..  +..+|++.|.++.+++..++|.+.+++.+ ++....|+...-     ....|
T Consensus       105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F  184 (525)
T KOG1253|consen  105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF  184 (525)
T ss_pred             hhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence            34456779999999999999888887  55689999999999999999999987755 566677765432     13567


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+|=.         +|.+  ....||+.+.+.++.||+|+++.
T Consensus       185 DvIDL---------DPyG--s~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  185 DVIDL---------DPYG--SPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             ceEec---------CCCC--CccHHHHHHHHHhhcCCEEEEEe
Confidence            76532         2222  44567799999999999999863

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.59  E-value=0.018  Score=47.57  Aligned_cols=107  Identities=11%  Similarity=0.072  Sum_probs=64.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-----CCc-ceEEEEccccCCc----cCCC-cc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-----GFS-CIKFLVDDVLDTK----LERQ-FQ  167 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-----~~~-~~~~~~~d~~~~~----~~~~-fD  167 (278)
                      ...+||++|+|+|..++.++.....+|+..|..... +..+.+...+     .+. .+.+...+.....    .... +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            456899999999988888888644589998875543 3333332222     111 3444444443322    1233 89


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +|++..++-..    .   ....++..++..|..+|.+++...-..
T Consensus       165 lilasDvvy~~----~---~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  165 LILASDVVYEE----E---SFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             EEEEeeeeecC----C---cchhHHHHHHHHHhcCCeEEEEEeccc
Confidence            99987765322    2   233344677788888887666665443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.37  E-value=0.0044  Score=55.70  Aligned_cols=107  Identities=15%  Similarity=0.286  Sum_probs=66.8

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCC--cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-c-cCCCccEEEeCCccc
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLVMDKGTLD  176 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~-~~~~fD~v~~~~~~~  176 (278)
                      ..|+|+.+|.|.|+.+|.+.+..  +|+-++ .+..+...-    ..|+  +- .-.|..+. + .+.+||++-+++.|.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIy----dRGL--IG-~yhDWCE~fsTYPRTYDLlHA~~lfs  438 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIY----DRGL--IG-VYHDWCEAFSTYPRTYDLLHADGLFS  438 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhh----hccc--ch-hccchhhccCCCCcchhheehhhhhh
Confidence            47999999999999999987531  222221 122222211    1222  11 12344332 2 478999999998886


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      ... +.   -....++-++-|+|+|||.+++.+...-.++...
T Consensus       439 ~~~-~r---C~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~  477 (506)
T PF03141_consen  439 LYK-DR---CEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKK  477 (506)
T ss_pred             hhc-cc---ccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHH
Confidence            543 22   3456667899999999999999865544444333

; GO: 0008168 methyltransferase activity

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.24  E-value=0.0088  Score=50.03  Aligned_cols=76  Identities=17%  Similarity=0.279  Sum_probs=48.7

Q ss_pred             CCeEEEEecCCCHHHHHHhhC--C-------CCcEEEEeCChHHHHHHHHHhhhCC-----C-cceEEEEccccCCccCC
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ--G-------FSDLTGVDYSEDAINLAQSLANRDG-----F-SCIKFLVDDVLDTKLER  164 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~--~-------~~~v~~~D~s~~~i~~a~~~~~~~~-----~-~~~~~~~~d~~~~~~~~  164 (278)
                      +.+|+|+|+|+|.++..+++.  .       ..+++.+|+||.+.+.-++++....     . .++.+ ..++.+.+   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            359999999999999887763  1       1379999999999999988876521     1 23555 33443332   


Q ss_pred             CccEEEeCCccceec
Q 023703          165 QFQLVMDKGTLDAIG  179 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~  179 (278)
                      ..-+|++|..+|+++
T Consensus        95 ~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 FPGFIIANELFDALP  109 (252)
T ss_dssp             CCEEEEEESSGGGS-
T ss_pred             CCEEEEEeeehhcCc
Confidence            234666777776554

; PDB: 4F3N_A 1ZKD_B.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=96.23  E-value=0.016  Score=50.12  Aligned_cols=69  Identities=17%  Similarity=0.266  Sum_probs=54.1

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCCccce
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDA  177 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~~~~~  177 (278)
                      +++|+.||.|.+...+...|+..+.++|+++.+++.-+.|+.       ....+|+.+...   ++.+|+++...+-..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~   73 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQG   73 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCce
Confidence            699999999999999999998789999999999999998873       678899988752   225999987665443

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=96.12  E-value=0.11  Score=48.15  Aligned_cols=112  Identities=17%  Similarity=0.191  Sum_probs=74.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC---C--CCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCc---cCCCccE
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ---G--FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK---LERQFQL  168 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~---~~~~fD~  168 (278)
                      ++..|.|+.||+|.+.......   |  ...++|.+..+.+...++.++..++..  ......+|-...+   ...+||.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            5678999999999988764432   2  136999999999999999987655542  2333344443321   1356999


Q ss_pred             EEeCCccceec----------------cC--CCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDKGTLDAIG----------------LH--PDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~~~~~~~~----------------~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |++++++...-                .|  ++....-..++..+..+|++||...+.-+
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~  356 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF  356 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence            99999875320                01  11112335677889999999998766544

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.12  E-value=0.027  Score=47.94  Aligned_cols=101  Identities=20%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             cccCCCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCC------cc-C
Q 023703           95 DKYLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDT------KL-E  163 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~------~~-~  163 (278)
                      .+.+++.+||-+|+|.=. .+...|+. |+++|+.+|+++..++.|++ +   |...+......-  .+.      .. .
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~  240 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGK  240 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhccc
Confidence            345789999999999744 44444554 88899999999999999998 3   332222211111  110      01 2


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ..+|+.+...-++.             -++.+...+++||.+++.....
T Consensus       241 ~~~d~~~dCsG~~~-------------~~~aai~a~r~gGt~vlvg~g~  276 (354)
T KOG0024|consen  241 KQPDVTFDCSGAEV-------------TIRAAIKATRSGGTVVLVGMGA  276 (354)
T ss_pred             cCCCeEEEccCchH-------------HHHHHHHHhccCCEEEEeccCC
Confidence            44888876544321             1266788899999988875433

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=96.12  E-value=0.0053  Score=51.23  Aligned_cols=104  Identities=17%  Similarity=0.245  Sum_probs=62.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHH-------Hh----hhCCCcceEEEEccccCCc--cCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-------LA----NRDGFSCIKFLVDDVLDTK--LER  164 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~-------~~----~~~~~~~~~~~~~d~~~~~--~~~  164 (278)
                      ..+++|||+|||+|...+.....|...+...|+|...++.-.-       .+    +... .-..+.+.++.+..  ..+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~-~~~~i~~s~l~dg~~~~t~  193 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENH-KVDEILNSLLSDGVFNHTE  193 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcc-cceeccccccccchhhhcc
Confidence            4678999999999999999988876689999998887731110       00    0000 01223333111211  123


Q ss_pred             --CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          165 --QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       165 --~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                        .||+|.+..++-...    .  ....+.......++++|+++..
T Consensus       194 ~~~ydlIlsSetiy~~~----~--~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  194 RTHYDLILSSETIYSID----S--LAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             ccchhhhhhhhhhhCcc----h--hhhhHhhhhhhcCCccchhhhh
Confidence              788888776654332    1  1111135566778899988765

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.03  E-value=0.048  Score=47.51  Aligned_cols=103  Identities=13%  Similarity=0.191  Sum_probs=71.8

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC---C-CccEEEeCCccc
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---R-QFQLVMDKGTLD  176 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~---~-~fD~v~~~~~~~  176 (278)
                      .+++|+.||.|.+..-+...|+.-+.++|+++.+++.-+.|+..     ..+...|+......   . .+|+++...+-+
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpPCQ   78 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPPCQ   78 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCCCc
Confidence            48999999999999999999988899999999999998887742     45667777765432   2 789999877765


Q ss_pred             eeccCC-C-Chh----hHHHHHHHHHhcccCCcEEEEEe
Q 023703          177 AIGLHP-D-GPL----KRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       177 ~~~~~~-~-~~~----~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+..-- . +..    ...--+.++...++| -.+++..
T Consensus        79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~EN  116 (328)
T COG0270          79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLEN  116 (328)
T ss_pred             chhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEec
Confidence            554211 0 111    112233566677788 5555553

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.015  Score=50.30  Aligned_cols=80  Identities=11%  Similarity=0.134  Sum_probs=54.7

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC---------CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEE
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ---------GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV  169 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v  169 (278)
                      .+..++|||.|+|.++..+++.         ...++..+++|+...+.-+++++...   -.+......+..+..-.-++
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~---~~~~~~~~~e~~p~~~~~i~  153 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE---DLIRWVEWVEDLPKKFPGIV  153 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc---cchhHHHHHHhccccCceEE
Confidence            3468999999999998877663         13489999999999998888886543   11122222222222224578


Q ss_pred             EeCCccceeccC
Q 023703          170 MDKGTLDAIGLH  181 (278)
Q Consensus       170 ~~~~~~~~~~~~  181 (278)
                      ++|..||+++++
T Consensus       154 ~~NElfDAlPv~  165 (370)
T COG1565         154 VSNELFDALPVE  165 (370)
T ss_pred             Eechhhccccce
Confidence            899999988753

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.00  E-value=0.024  Score=50.51  Aligned_cols=110  Identities=22%  Similarity=0.263  Sum_probs=66.5

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc-ccC----CccCCCcc
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLD----TKLERQFQ  167 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d-~~~----~~~~~~fD  167 (278)
                      ....++.+||..|||. |..+..+++. |..+++++|.++...+.+++..   +...+.....+ ..+    ......+|
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~D  256 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGPD  256 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCCC
Confidence            3446788999999987 7777777776 5446999999999998888742   21112222221 111    11123689


Q ss_pred             EEEeCCccc-----------eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          168 LVMDKGTLD-----------AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++..-.-+           ++ +.+.+  +....+..+.+.|+|+|.++....
T Consensus       257 ~vld~vg~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         257 VCIDAVGMEAHGSPLHKAEQAL-LKLET--DRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             EEEECCCCcccccccccccccc-ccccc--CchHHHHHHHHHhccCCEEEEEcC
Confidence            988742111           00 00000  112345788899999999988753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.75  E-value=0.062  Score=46.51  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=53.6

Q ss_pred             EEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCcccee
Q 023703          103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAI  178 (278)
Q Consensus       103 vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~  178 (278)
                      |+|+.||.|.++.-+.+.|+.-+.++|+++.+++.-+.|+.     + .+..+|+.+...  -..+|+++...+-..+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f   72 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQPF   72 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence            68999999999999998888677889999999999888763     2 345677776542  2358999876655444

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.64  E-value=0.0026  Score=45.26  Aligned_cols=46  Identities=17%  Similarity=0.325  Sum_probs=32.9

Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +||+|+|..+.-++.++.- .+....+++.+.+.|+|||.+++..-+
T Consensus         1 ~yDvilclSVtkWIHLn~G-D~Gl~~~f~~~~~~L~pGG~lilEpQ~   46 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWG-DEGLKRFFRRIYSLLRPGGILILEPQP   46 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHH-HHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred             CccEEEEEEeeEEEEecCc-CHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence            4899999887766654432 335678889999999999999998543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.55  E-value=0.012  Score=41.70  Aligned_cols=32  Identities=34%  Similarity=0.570  Sum_probs=27.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS  131 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s  131 (278)
                      +....+|||||+|.+.-.|.+.|+ .-.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence            345799999999999999999997 68899963

; GO: 0008168 methyltransferase activity

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.49  E-value=0.011  Score=52.04  Aligned_cols=63  Identities=17%  Similarity=0.208  Sum_probs=55.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT  160 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~  160 (278)
                      .++|..|.|+.||.|-+++.++..++ .|++-|.++.+++..+.+++.+.+.  +++.+..|+...
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            46788999999999999999999985 8999999999999999999988774  378888887653

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.44  E-value=0.041  Score=49.40  Aligned_cols=112  Identities=17%  Similarity=0.152  Sum_probs=75.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--------ccCCCccE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--------KLERQFQL  168 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--------~~~~~fD~  168 (278)
                      ..+.++|-+|-|.|.+...+... +...++++++.|.+++.|++++....-.+..+...|..+.        ..+..||+
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            34568999999999998888776 5569999999999999999987543212233333443321        12457998


Q ss_pred             EEeC-Cc--cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDK-GT--LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++.. ..  .+.+.+.++.. -...++..++.+|.|.|.+++-..
T Consensus       374 l~~dvds~d~~g~~~pp~~f-va~~~l~~~k~~l~p~g~f~inlv  417 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPAF-VAQVALQPVKMILPPRGMFIINLV  417 (482)
T ss_pred             EEEECCCCCcccCcCCchHH-HHHHHHHHHhhccCccceEEEEEe
Confidence            8742 11  22333333332 335677899999999999988643

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.24  E-value=0.14  Score=42.43  Aligned_cols=126  Identities=14%  Similarity=0.100  Sum_probs=72.3

Q ss_pred             hhhccccCCCCeEEEEecCCCHHHHHHhh----CC--CCcEEEEeCC--------------------------hHHHHHH
Q 023703           91 VEENDKYLSSWSVLDIGTGNGLLLQELSK----QG--FSDLTGVDYS--------------------------EDAINLA  138 (278)
Q Consensus        91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~--~~~v~~~D~s--------------------------~~~i~~a  138 (278)
                      ++.+....-++.|+|.||-.|..+..++.    .+  .+++++.|-=                          ....+..
T Consensus        66 ~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V  145 (248)
T PF05711_consen   66 VEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEV  145 (248)
T ss_dssp             HHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHH
T ss_pred             HHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHH
Confidence            33333334456999999999976654432    22  3468887632                          1246666


Q ss_pred             HHHhhhCCC--cceEEEEccccCCccC---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          139 QSLANRDGF--SCIKFLVDDVLDTKLE---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       139 ~~~~~~~~~--~~~~~~~~d~~~~~~~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++++...++  +++.++.+.+.+..+.   +++-+         +.++-+-.+.....|+.+...|.|||++++-+.+. 
T Consensus       146 ~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAl---------l~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~-  215 (248)
T PF05711_consen  146 RENFARYGLLDDNVRFVKGWFPDTLPDAPIERIAL---------LHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH-  215 (248)
T ss_dssp             HHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEE---------EEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT-
T ss_pred             HHHHHHcCCCcccEEEECCcchhhhccCCCccEEE---------EEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC-
Confidence            777766664  4699999998654332   22222         22333344567788899999999999999998777 


Q ss_pred             hHHHHHHHhhhhhc
Q 023703          214 KDELVHEVSNLSQR  227 (278)
Q Consensus       214 ~~~~~~~~~~~~~~  227 (278)
                       ..-.+.+.+|...
T Consensus       216 -~gcr~AvdeF~~~  228 (248)
T PF05711_consen  216 -PGCRKAVDEFRAE  228 (248)
T ss_dssp             -HHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHH
Confidence             3334445555433

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.14  E-value=0.21  Score=45.96  Aligned_cols=102  Identities=13%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             cCCCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEE--Ecc------ccCCc-----
Q 023703           97 YLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL--VDD------VLDTK-----  161 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~--~~d------~~~~~-----  161 (278)
                      ..++.+|+-+|||.=. .+...+.. |+ +|+++|.++..++.+++    .|...+.+-  ..+      +....     
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~~~  236 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEFIK  236 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhHHH
Confidence            3578899999999754 44444544 76 89999999999998886    232111111  100      00000     


Q ss_pred             ------cC--CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          162 ------LE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       162 ------~~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                            .+  ..+|+++.......       ......+.+++.+.+||||.++....
T Consensus       237 ~~~~~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        237 AEMALFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                  01  35899987433211       00112223889999999999888765

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.12  E-value=0.034  Score=50.31  Aligned_cols=105  Identities=20%  Similarity=0.309  Sum_probs=69.7

Q ss_pred             CCeEEEEecCCCHHHHHHhh---CC--CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccC-CCccEEEeC
Q 023703          100 SWSVLDIGTGNGLLLQELSK---QG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDK  172 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~---~~--~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-~~fD~v~~~  172 (278)
                      ...|+-+|.|-|-+.....+   .-  .-++++++-+|.++--.+.+ +.... .+++++..|+.++..+ ++.|++++-
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE  446 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNAPREQADIIVSE  446 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCCchhhccchHHH
Confidence            34678899999966554433   21  12799999999998877653 22222 3599999999999865 889988862


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                       .+..+......+    .-|.-+-+.|||+|+.+=...
T Consensus       447 -LLGSFGDNELSP----ECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822|consen  447 -LLGSFGDNELSP----ECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             -hhccccCccCCH----HHHHHHHhhcCCCceEccchh
Confidence             222222122222    334778899999998776543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.08  E-value=0.086  Score=46.07  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=56.6

Q ss_pred             CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc-cCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK-LERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~-~~~~fD~v~~~~  173 (278)
                      .++.+||-.|||. |..+..+++. |..+|+++|.++..++.+++    .|... +.....+..+.. ..+.+|+++..-
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~  243 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEVS  243 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEECC
Confidence            4678999888742 2334445554 66579999999998888875    33221 111111221111 123478887532


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .            . ...++.+.++|++||++++...
T Consensus       244 G------------~-~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        244 G------------H-PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             C------------C-HHHHHHHHHHhhcCCEEEEEcc
Confidence            1            0 1123678889999999988754

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.95  E-value=0.28  Score=44.76  Aligned_cols=77  Identities=12%  Similarity=0.153  Sum_probs=54.4

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------------
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------------  162 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------------  162 (278)
                      ..+++|+.||.|.+...+-..|+..|.++|+++.+.+.-+.|+...  +....+..|+.+...                 
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~  165 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ  165 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCccccccccchhhhhhhhhc
Confidence            4599999999999999998888777899999999998888775311  123344556555431                 


Q ss_pred             -CCCccEEEeCCcccee
Q 023703          163 -ERQFQLVMDKGTLDAI  178 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~  178 (278)
                       -...|+++...+-..+
T Consensus       166 ~~p~~DvL~gGpPCQ~F  182 (467)
T PRK10458        166 HIPDHDVLLAGFPCQPF  182 (467)
T ss_pred             cCCCCCEEEEcCCCCcc
Confidence             1257888876554433

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.63  E-value=0.33  Score=34.98  Aligned_cols=95  Identities=14%  Similarity=0.203  Sum_probs=60.6

Q ss_pred             cCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeCCccceec
Q 023703          108 TGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       108 cG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~~~~~~~~  179 (278)
                      ||.|.++..+++.   +..+|+.+|.++..++.++..       .+.++.+|..+...     -.+.+.+++...     
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTD-----   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccC-----
Confidence            6777788777664   334799999999998888762       36789999988531     246776665322     


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                          +. ..-..+....+.+.|...++....+....+.+.
T Consensus        72 ----~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~  106 (116)
T PF02254_consen   72 ----DD-EENLLIALLARELNPDIRIIARVNDPENAELLR  106 (116)
T ss_dssp             ----SH-HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred             ----CH-HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence                11 222223445566778888888776665544444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=94.62  E-value=0.41  Score=42.44  Aligned_cols=112  Identities=12%  Similarity=0.124  Sum_probs=61.4

Q ss_pred             CCeEEEEecCCCHHHHHHhhC------------C----CCcEEEEeCChHHHHHHHHHhhh--------------CCCcc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ------------G----FSDLTGVDYSEDAINLAQSLANR--------------DGFSC  149 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~------------~----~~~v~~~D~s~~~i~~a~~~~~~--------------~~~~~  149 (278)
                      ..+|+|+|||+|.+++.+...            +    .-+|..-|...+--...-+.+..              .+...
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            568999999999777655321            1    12566666654322222111110              01001


Q ss_pred             --eEEEEccccCC-ccCCCccEEEeCCccceeccCCCCh-------------------------------hhHHHHHHHH
Q 023703          150 --IKFLVDDVLDT-KLERQFQLVMDKGTLDAIGLHPDGP-------------------------------LKRIMYWDSV  195 (278)
Q Consensus       150 --~~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~~~~~~~-------------------------------~~~~~~l~~~  195 (278)
                        +.-+.+....- -+.++.+++++.-.++++.--|.+.                               .+...+|+.-
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              11112333222 2467889999888887765222111                               1234566667


Q ss_pred             HhcccCCcEEEEEecC
Q 023703          196 SKLVAPGGLLVITSCN  211 (278)
Q Consensus       196 ~~~LkpgG~l~~~~~~  211 (278)
                      .+-|.|||+++++...
T Consensus       224 a~ELvpGG~mvl~~~G  239 (386)
T PLN02668        224 AQEMKRGGAMFLVCLG  239 (386)
T ss_pred             HHHhccCcEEEEEEec
Confidence            7788999999998643

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.49  E-value=0.23  Score=43.58  Aligned_cols=95  Identities=19%  Similarity=0.319  Sum_probs=55.0

Q ss_pred             CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeC---ChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC
Q 023703           98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDY---SEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~---s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      .++.+||-+|+|. |.++..+++. |+ +|++++.   ++.-.+.+++    .|...+.....+..+....+.+|+|+..
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~~~~~~~~d~vid~  245 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAEVKLVGEFDLIIEA  245 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhhhhhcCCCCEEEEC
Confidence            4678999998753 3444555555 65 7999987   6676666654    3332121111111110112457888763


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      -.-             ...+..+.++|+++|.+++...
T Consensus       246 ~g~-------------~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         246 TGV-------------PPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             cCC-------------HHHHHHHHHHccCCcEEEEEec
Confidence            211             1134778899999999987653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.41  E-value=0.3  Score=42.21  Aligned_cols=97  Identities=26%  Similarity=0.343  Sum_probs=59.4

Q ss_pred             cccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-ccc---CCccCCCccE
Q 023703           95 DKYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVL---DTKLERQFQL  168 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~---~~~~~~~fD~  168 (278)
                      ....++.+||..|+| .|..+..+++. |. +|++++.++...+.+++    .+...+-.... +..   .....+.+|+
T Consensus       161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceE
Confidence            345677899998775 36666677775 64 79999999988887754    23221111000 100   0112356888


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.....             ...++.+.+.|+++|.++...
T Consensus       236 vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         236 IFDFVGT-------------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             EEECCCC-------------HHHHHHHHHHhhcCCEEEEEC
Confidence            8753211             123377889999999998764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=94.38  E-value=0.078  Score=45.02  Aligned_cols=105  Identities=17%  Similarity=0.200  Sum_probs=67.2

Q ss_pred             ccccccCcccccccccccch---hhhccccCCC-Ce---EEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHH
Q 023703           71 CISISQGHMLNHVEDLKSEP---VEENDKYLSS-WS---VLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSL  141 (278)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~---vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~  141 (278)
                      ...+..|++.|........+   -.++...+.+ .+   -+|||+|...+--.+...  ++ ..+++|++...++.|+++
T Consensus        67 ~veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~sn  145 (419)
T KOG2912|consen   67 SVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSN  145 (419)
T ss_pred             eEecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhcc
Confidence            34677777777764433222   2222222222 22   479998887765555444  33 789999999999999999


Q ss_pred             hhhCCCcc-eEEEEccccC--------CccCCCccEEEeCCccc
Q 023703          142 ANRDGFSC-IKFLVDDVLD--------TKLERQFQLVMDKGTLD  176 (278)
Q Consensus       142 ~~~~~~~~-~~~~~~d~~~--------~~~~~~fD~v~~~~~~~  176 (278)
                      ..++++.. +.+++....+        ...+..||.+.||++|-
T Consensus       146 V~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFf  189 (419)
T KOG2912|consen  146 VEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFF  189 (419)
T ss_pred             ccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchh
Confidence            99988754 5555543322        12245699999999873

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.33  E-value=0.29  Score=35.16  Aligned_cols=63  Identities=24%  Similarity=0.419  Sum_probs=46.9

Q ss_pred             CCCeEEEEecCCC-HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~  173 (278)
                      ..++|.++|-|-= ..+..|+++|+ .++++|+++.       +.   + ..+++...|++++..  -...|+|++-.
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~iY~~A~lIYSiR   78 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TA---P-EGLRFVVDDITNPNISIYEGADLIYSIR   78 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cC---c-ccceEEEccCCCccHHHhhCccceeecC
Confidence            4459999998876 45667888887 7999999887       11   1 358899999998754  35678888743

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.09  E-value=1.1  Score=37.03  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhh----CC-CCcEEEEeCChHHHHHHHHHh-hhC-CCcceEEEEccccCCc---cCCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSK----QG-FSDLTGVDYSEDAINLAQSLA-NRD-GFSCIKFLVDDVLDTK---LERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~----~~-~~~v~~~D~s~~~i~~a~~~~-~~~-~~~~~~~~~~d~~~~~---~~~~  165 (278)
                      ....+.+.+|+|+|+..-+..|..    .+ ..+++.+|+|...++...+.+ ... ++ .+.-+++|....-   +...
T Consensus        75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~~~~  153 (321)
T COG4301          75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELPRGG  153 (321)
T ss_pred             HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhcccCCC
Confidence            345578999999999976665544    33 248999999998887544433 222 22 3666677765421   1111


Q ss_pred             ccE-EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          166 FQL-VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       166 fD~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      --+ ++...++     ....+.+...++.+++..|+||-.+++..-....
T Consensus       154 ~Rl~~flGStl-----GN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~  198 (321)
T COG4301         154 RRLFVFLGSTL-----GNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP  198 (321)
T ss_pred             eEEEEEecccc-----cCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence            122 2222233     3344667888999999999999999986544333

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.03  E-value=0.37  Score=42.37  Aligned_cols=99  Identities=22%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             CCCCeEEEEecCCC-HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc-ccC----CccCCCccEEE
Q 023703           98 LSSWSVLDIGTGNG-LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-VLD----TKLERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G-~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d-~~~----~~~~~~fD~v~  170 (278)
                      .++.+|+=+|||+= .++..+++. |+++|+.+|.++.-++.|++....   ..+.....+ ...    ......+|+++
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---~~~~~~~~~~~~~~~~~~t~g~g~D~vi  243 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---DVVVNPSEDDAGAEILELTGGRGADVVI  243 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---eEeecCccccHHHHHHHHhCCCCCCEEE
Confidence            34458999999974 444555555 778999999999999999884321   111111111 110    01123699988


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ....             ....+..+.++++|||.+.+.....
T Consensus       244 e~~G-------------~~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         244 EAVG-------------SPPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             ECCC-------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence            6332             1124478999999999999876443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=93.99  E-value=0.11  Score=38.21  Aligned_cols=84  Identities=27%  Similarity=0.349  Sum_probs=55.8

Q ss_pred             CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-------ccCCCccEEEeCCccceecc
Q 023703          109 GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQFQLVMDKGTLDAIGL  180 (278)
Q Consensus       109 G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-------~~~~~fD~v~~~~~~~~~~~  180 (278)
                      |.|..+..+++. | .+|+++|.++.-.+.+++.    |..  .++..+-.+.       .....+|+|+..-.-     
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-----   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-----   68 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----ccc--ccccccccccccccccccccccceEEEEecCc-----
Confidence            457777777776 7 6999999999999888763    321  2222222211       112479999864321     


Q ss_pred             CCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          181 HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       181 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                              ...++...++|+|+|.+++.....
T Consensus        69 --------~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 --------GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             --------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             --------HHHHHHHHHHhccCCEEEEEEccC
Confidence                    123478889999999999987654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.75  E-value=0.26  Score=43.32  Aligned_cols=98  Identities=17%  Similarity=0.095  Sum_probs=57.1

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccE
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQL  168 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~  168 (278)
                      ...++.+||-.|||. |..+..+++. |..+|+++|.++.-.+.+++    .|.+. +.....+..+    ......+|+
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~  248 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADV  248 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence            456788999988742 2344445554 65469999999998888864    33221 1111111111    011235888


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++..-.-             ...+....+.+++||++++...
T Consensus       249 vid~~g~-------------~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       249 VIDAVGR-------------PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             EEECCCC-------------HHHHHHHHHHhccCCEEEEECC
Confidence            8753210             1123667788999999988653

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PTZ00357 methyltransferase; Provisional

Probab=93.72  E-value=0.26  Score=46.35  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             CeEEEEecCCCHHHHHHhhC----CCC-cEEEEeCChHHHHHHHHHhhh-CCC--------cceEEEEccccCCccC---
Q 023703          101 WSVLDIGTGNGLLLQELSKQ----GFS-DLTGVDYSEDAINLAQSLANR-DGF--------SCIKFLVDDVLDTKLE---  163 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~----~~~-~v~~~D~s~~~i~~a~~~~~~-~~~--------~~~~~~~~d~~~~~~~---  163 (278)
                      ..|+-+|+|-|-+.....+.    +.. +|+++|.++.++.....+... ...        ..|+++..|+..+..+   
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            36899999999665544332    322 899999997755444444321 122        1389999999997532   


Q ss_pred             ---------CCccEEEe
Q 023703          164 ---------RQFQLVMD  171 (278)
Q Consensus       164 ---------~~fD~v~~  171 (278)
                               +++|++|+
T Consensus       782 ~s~~~P~~~gKaDIVVS  798 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS  798 (1072)
T ss_pred             ccccccccccccceehH
Confidence                     37999987

>PRK13699 putative methylase; Provisional

Probab=93.64  E-value=0.22  Score=40.91  Aligned_cols=69  Identities=9%  Similarity=0.064  Sum_probs=43.6

Q ss_pred             EEEEccccCC---ccCCCccEEEeCCccceeccC-------CCC-hhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          151 KFLVDDVLDT---KLERQFQLVMDKGTLDAIGLH-------PDG-PLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       151 ~~~~~d~~~~---~~~~~fD~v~~~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      +++++|+.+.   -+++++|+|+.+++|..-.-+       ... ..-....+.++.++|||||.+++.........+..
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~   82 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMA   82 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHH
Confidence            5678888764   246899999999998521000       000 12234677999999999998887544333333333

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.55  E-value=0.023  Score=43.03  Aligned_cols=44  Identities=14%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++.|+|++..+++|+.     ......+++++.+.|||||++-+..+.
T Consensus        45 dns~d~iyaeHvlEHlt-----~~Eg~~alkechr~Lrp~G~LriAvPd   88 (185)
T COG4627          45 DNSVDAIYAEHVLEHLT-----YDEGTSALKECHRFLRPGGKLRIAVPD   88 (185)
T ss_pred             CcchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence            57889999998988886     346677889999999999999987553

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=93.55  E-value=0.62  Score=40.65  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=60.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC------------C-----CCcEEEEeCChHHHHHHHHHhhhC-----CCcc--eEEEE
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ------------G-----FSDLTGVDYSEDAINLAQSLANRD-----GFSC--IKFLV  154 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~------------~-----~~~v~~~D~s~~~i~~a~~~~~~~-----~~~~--~~~~~  154 (278)
                      ..-+|+|+||.+|..++.+...            +     .-+|+-.|.-.+--...-+.+...     ...+  +.-+.
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            4468999999999888876541            1     016788887654322221111111     0112  33345


Q ss_pred             ccccCC-ccCCCccEEEeCCccceeccCCCC---------------------h-----------hhHHHHHHHHHhcccC
Q 023703          155 DDVLDT-KLERQFQLVMDKGTLDAIGLHPDG---------------------P-----------LKRIMYWDSVSKLVAP  201 (278)
Q Consensus       155 ~d~~~~-~~~~~fD~v~~~~~~~~~~~~~~~---------------------~-----------~~~~~~l~~~~~~Lkp  201 (278)
                      +....- -++++.|++++...++++.--|..                     +           .+...+|+.=++-|+|
T Consensus        96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  175 (334)
T PF03492_consen   96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP  175 (334)
T ss_dssp             S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence            565543 356889999999888877521100                     1           2334566666778899


Q ss_pred             CcEEEEEecC
Q 023703          202 GGLLVITSCN  211 (278)
Q Consensus       202 gG~l~~~~~~  211 (278)
                      ||++++....
T Consensus       176 GG~mvl~~~g  185 (334)
T PF03492_consen  176 GGRMVLTFLG  185 (334)
T ss_dssp             EEEEEEEEEE
T ss_pred             CcEEEEEEee
Confidence            9999997543

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=93.21  E-value=0.44  Score=41.35  Aligned_cols=94  Identities=20%  Similarity=0.378  Sum_probs=56.1

Q ss_pred             CCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-CCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ++.+||-.|||. |..+..+++. |..++++++.++...+.+++.    +... +.....+...... .+.+|+++....
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g  240 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GADETVNLARDPLAAYAADKGDFDVVFEASG  240 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCCEEEcCCchhhhhhhccCCCccEEEECCC
Confidence            778999988765 5555566665 654799999998888766542    2211 1111111111111 234888886322


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .             ...++.+.+.|+++|+++...
T Consensus       241 ~-------------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         241 A-------------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             C-------------HHHHHHHHHHHhcCCEEEEEe
Confidence            1             112367889999999998764

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.16  E-value=0.32  Score=41.83  Aligned_cols=88  Identities=23%  Similarity=0.266  Sum_probs=52.9

Q ss_pred             CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      .++.+||-+|||. |.++..+++. |+..|+++|.++..++.+...    .     ++  |..+. ....+|+|+..-.-
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~-~~~g~Dvvid~~G~  210 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD-PRRDYRAIYDASGD  210 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc-cCCCCCEEEECCCC
Confidence            3567899888753 3445555554 765688889888776665431    1     01  11110 12458888863221


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                                   ...+..+.+.|+++|++++...
T Consensus       211 -------------~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       211 -------------PSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             -------------HHHHHHHHHhhhcCcEEEEEee
Confidence                         1233678889999999997653

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.16  E-value=0.15  Score=44.43  Aligned_cols=51  Identities=27%  Similarity=0.382  Sum_probs=40.4

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHH
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  141 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~  141 (278)
                      ++..+.....-..|+|+|.|.|.++..+.-+ |. .|.+||-|....+.|++.
T Consensus       144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             HHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHH
Confidence            3444444455678999999999999999887 44 899999999888888664

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=93.10  E-value=2.9  Score=34.56  Aligned_cols=158  Identities=10%  Similarity=0.069  Sum_probs=100.8

Q ss_pred             ccccccCcchhhHHhhhhcccccccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEe
Q 023703           50 AGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVD  129 (278)
Q Consensus        50 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D  129 (278)
                      .+..-.....++..++|...+.--.....++    ......+..+...+++.+ |..-||+-.++..+.+.. .++.+++
T Consensus        44 ~G~YdL~~~eA~ktgE~~~GI~RL~~a~~lp----a~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~q-DRl~l~E  117 (279)
T COG2961          44 AGRYDLSGEEAEKTGEYEQGIARLWQAADLP----AELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQ-DRLVLTE  117 (279)
T ss_pred             cceeeccchHhhhhhHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchh-ceeeeee
Confidence            3443344444555666665432111111111    222233444555667666 899999999999998875 4899999


Q ss_pred             CChHHHHHHHHHhhhCCCcceEEEEccccCC-----ccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhccc--CC
Q 023703          130 YSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA--PG  202 (278)
Q Consensus       130 ~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pg  202 (278)
                      +-|.-....++++...  .++.+..+|-...     ++.++=-+|+..++|+.-.       +...+++.+.+.++  ++
T Consensus       118 LHp~D~~~L~~~f~~d--~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~-------eY~rvv~~l~~~~kRf~~  188 (279)
T COG2961         118 LHPSDAPLLRNNFAGD--RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKD-------EYQRVVEALAEAYKRFAT  188 (279)
T ss_pred             cCccHHHHHHHHhCCC--cceEEEecCcHHHHhhhCCCCCcceEEEeCCCccccc-------HHHHHHHHHHHHHHhhcC
Confidence            9999999999998732  5799999998652     3445566888888886432       44444455555554  77


Q ss_pred             cEEEEEecCCChHHHHHHHh
Q 023703          203 GLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       203 G~l~~~~~~~~~~~~~~~~~  222 (278)
                      |+..+--+-....+.....+
T Consensus       189 g~yaiWYPik~r~~~~~f~~  208 (279)
T COG2961         189 GTYAIWYPIKDRRQIRRFLR  208 (279)
T ss_pred             ceEEEEEeecchHHHHHHHH
Confidence            88877776666665555444

>PRK11524 putative methyltransferase; Provisional

Probab=93.08  E-value=0.21  Score=42.59  Aligned_cols=62  Identities=10%  Similarity=0.072  Sum_probs=42.2

Q ss_pred             ceEEEEccccCCc---cCCCccEEEeCCccceec-c-CCC---Ch----hhHHHHHHHHHhcccCCcEEEEEec
Q 023703          149 CIKFLVDDVLDTK---LERQFQLVMDKGTLDAIG-L-HPD---GP----LKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       149 ~~~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~-~-~~~---~~----~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +..++++|+.+..   .+++||+|+++++|..-. . ...   ..    .-...++.++.++|||||.+++...
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            4578889988742   367899999999985310 0 000   00    1124677999999999999998643

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.07  E-value=0.27  Score=40.76  Aligned_cols=97  Identities=26%  Similarity=0.378  Sum_probs=58.6

Q ss_pred             cCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC---CccCCCccEEE
Q 023703           97 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD---TKLERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~---~~~~~~fD~v~  170 (278)
                      ..++.+||..|+|+ |..+..++.. | .+|++++.++...+.+++.    +... +.....+...   ....+.+|+++
T Consensus       132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vi  206 (271)
T cd05188         132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADVVI  206 (271)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence            36788999999986 5555556665 5 5899999998877777543    2111 1111111100   01135688888


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ....-.             ..+..+.+.|+++|.++.....
T Consensus       207 ~~~~~~-------------~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         207 DAVGGP-------------ETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             ECCCCH-------------HHHHHHHHhcccCCEEEEEccC
Confidence            642210             1236778889999999887543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.00  E-value=0.17  Score=44.68  Aligned_cols=98  Identities=18%  Similarity=0.202  Sum_probs=56.9

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCC---ccCCCccEE
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT---KLERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~---~~~~~fD~v  169 (278)
                      ...++.+||-.|+|. |..+..+++. |..+|+++|.++.-.+.+++    .|... +.....|..+.   ...+.+|++
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~v  263 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDYA  263 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence            356788999888642 2334444554 65579999999998888865    33221 11111111110   012368888


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +..-.-             ...+..+.+.|+++|.+++...
T Consensus       264 id~~G~-------------~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         264 FEMAGS-------------VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             EECCCC-------------hHHHHHHHHHHhcCCEEEEEcc
Confidence            853211             1123667888999999987653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.98  E-value=0.81  Score=35.43  Aligned_cols=105  Identities=12%  Similarity=0.152  Sum_probs=66.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEEeC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK  172 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~~~  172 (278)
                      ....+|+-|||=+-...+.-......+++..|++...-        ..+ ++ .|..-|.....     ..++||+|+.+
T Consensus        24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~--------~~~-~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D   93 (162)
T PF10237_consen   24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE--------QFG-GD-EFVFYDYNEPEELPEELKGKFDVVVID   93 (162)
T ss_pred             CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH--------hcC-Cc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence            34579999999875554444112234899999987543        222 23 46666666542     24789999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      ++|  +.     .+-.......++.++++++.++++++.....-+.+
T Consensus        94 PPF--l~-----~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~  133 (162)
T PF10237_consen   94 PPF--LS-----EECLTKTAETIRLLLKPGGKIILCTGEEMEELIKK  133 (162)
T ss_pred             CCC--CC-----HHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHH
Confidence            998  21     22334555677777799999999876554443333

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.97  E-value=0.1  Score=38.30  Aligned_cols=64  Identities=23%  Similarity=0.445  Sum_probs=38.5

Q ss_pred             CCCCeEEEEecCCC-HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC--CCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~fD~v~~~~  173 (278)
                      .+..+|+|+|-|.- ..+..|.++|+ .|+++|+.+.       ++.    ..+.++..|++++...  ...|+|++-.
T Consensus        12 ~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~----~g~~~v~DDif~P~l~iY~~a~lIYSiR   78 (127)
T PF03686_consen   12 NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP----EGVNFVVDDIFNPNLEIYEGADLIYSIR   78 (127)
T ss_dssp             S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES
T ss_pred             CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc----cCcceeeecccCCCHHHhcCCcEEEEeC
Confidence            34559999999987 46667777786 8999999988       111    2577899999987542  6789999743

; PDB: 2K4M_A.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.27  E-value=0.65  Score=40.55  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=55.4

Q ss_pred             cCCCCeEEEEecCCCH-HHHHHhh--CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGL-LLQELSK--QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~-~~~~l~~--~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ..++.+||-+|||.=. ++..+++  .|..+|+++|.++.-++.+++    .+.  . ....+.   .....+|+|+..-
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~~~---~~~~g~d~viD~~  230 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLIDDI---PEDLAVDHAFECV  230 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehhhh---hhccCCcEEEECC
Confidence            3568899999975422 3334444  245589999999988888764    211  1 111111   1112478887532


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .-      .    .....+....++|++||++++...
T Consensus       231 G~------~----~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         231 GG------R----GSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             CC------C----ccHHHHHHHHHhCcCCcEEEEEee
Confidence            10      0    012234778899999999987653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=92.21  E-value=0.42  Score=40.80  Aligned_cols=114  Identities=21%  Similarity=0.239  Sum_probs=70.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-------CC--------------CcEEEEeCCh--HHHHHHHHHhhhC---------
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-------GF--------------SDLTGVDYSE--DAINLAQSLANRD---------  145 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-------~~--------------~~v~~~D~s~--~~i~~a~~~~~~~---------  145 (278)
                      .+..+||-||-|.|.-...++..       ..              -+++.+|+.+  ..++.....+...         
T Consensus        85 ~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~  164 (315)
T PF11312_consen   85 KKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASA  164 (315)
T ss_pred             ccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccc
Confidence            34579999999998544444321       00              1799999986  4556555544333         


Q ss_pred             ----CC----cceEEEEccccCCccCC--------CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          146 ----GF----SCIKFLVDDVLDTKLER--------QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       146 ----~~----~~~~~~~~d~~~~~~~~--------~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                          ..    -++.|.+.|+.....++        ..++|....+++-+.  ........++|.++-..++||..|++++
T Consensus       165 ~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELf--s~s~~kTt~FLl~Lt~~~~~GslLLVvD  242 (315)
T PF11312_consen  165 ANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELF--STSISKTTKFLLRLTDICPPGSLLLVVD  242 (315)
T ss_pred             cccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHH--hcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence                00    14788999998764321        234444333332221  1223466789999999999999999987


Q ss_pred             cCCC
Q 023703          210 CNST  213 (278)
Q Consensus       210 ~~~~  213 (278)
                      ....
T Consensus       243 SpGS  246 (315)
T PF11312_consen  243 SPGS  246 (315)
T ss_pred             CCCC
Confidence            5443

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.09  E-value=1  Score=39.10  Aligned_cols=92  Identities=14%  Similarity=0.055  Sum_probs=55.8

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      +..++.+||-.|+|. |..+..+++. |. +|++++.++.-.+.+++    .|...+  +.  ..+. ..+.+|+++...
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~v--i~--~~~~-~~~~~d~~i~~~  231 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAASA--GG--AYDT-PPEPLDAAILFA  231 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCcee--cc--cccc-CcccceEEEECC
Confidence            456788999999742 2344445554 65 79999999988877766    343221  11  1111 123577665321


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..             ...+....++|++||++++...
T Consensus       232 ~~-------------~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       232 PA-------------GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             Cc-------------HHHHHHHHHhhCCCcEEEEEec
Confidence            11             1134778899999999988654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=92.00  E-value=1.1  Score=37.49  Aligned_cols=96  Identities=22%  Similarity=0.235  Sum_probs=56.0

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      .+..++.+||-.|||. |..+..+++. |..+|++++.++...+.+++.-.   ...+.....   .......+|+++..
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~---~~~~~~~~~---~~~~~~~~d~vl~~  166 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGP---ADPVAADTA---DEIGGRGADVVIEA  166 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCC---Cccccccch---hhhcCCCCCEEEEc
Confidence            3456778899888754 4455555555 65349999999888876665310   111110000   01123458888753


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ...             ...+....+.|+++|.++...
T Consensus       167 ~~~-------------~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         167 SGS-------------PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             cCC-------------hHHHHHHHHHhcCCcEEEEEe
Confidence            111             112367788899999998764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.99  E-value=3.9  Score=33.24  Aligned_cols=108  Identities=14%  Similarity=0.078  Sum_probs=61.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..+++.|+ +|++++-++...+.+.+.....  .++.++.+|+.+...           -+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4568999998654   23334455576 8999999988776654444332  257888999886421           13


Q ss_pred             CccEEEeCCcccee-ccCCC---------ChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAI-GLHPD---------GPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~-~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.|.++.+...... .....         .......+++.+.+.++++|.+++.+
T Consensus        81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            46777765432110 00000         00011233456666777888877765

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.90  E-value=0.28  Score=41.47  Aligned_cols=95  Identities=20%  Similarity=0.203  Sum_probs=54.5

Q ss_pred             CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc----cCCccCCCccEEEe
Q 023703           98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV----LDTKLERQFQLVMD  171 (278)
Q Consensus        98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~----~~~~~~~~fD~v~~  171 (278)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++.-.+.+++    .|...+ +...+.    ........+|+++.
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~g~d~vid  193 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQNGRGVDVALE  193 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHhCCCCCCEEEE
Confidence            4678999887642 2233344444 66459999999988877765    332211 100111    00111235888875


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ...-             ...++.+.+.|+|+|++++...
T Consensus       194 ~~G~-------------~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       194 FSGA-------------TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CCCC-------------hHHHHHHHHHhcCCCEEEEecc
Confidence            3210             1123678889999999988753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=91.87  E-value=0.83  Score=36.16  Aligned_cols=101  Identities=16%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC----C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQF  166 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~f  166 (278)
                      ++..|+++|.-.|..++..|..    | ..+|+++|++-...+-+...     .+++.|+.++-.++..       ...|
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y  143 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY  143 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence            4569999999999887777664    4 23899999997765544332     3689999999887631       1222


Q ss_pred             cEEE-eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          167 QLVM-DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       167 D~v~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      --|+ +-.+-++.       +...+-++-...+|.-|-.+++.+.+
T Consensus       144 ~kIfvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeDs~  182 (237)
T COG3510         144 PKIFVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVEDSN  182 (237)
T ss_pred             CcEEEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEeccc
Confidence            2222 22222222       25566667888899999998887543

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=91.59  E-value=2.6  Score=34.03  Aligned_cols=83  Identities=11%  Similarity=0.138  Sum_probs=52.8

Q ss_pred             chhhhccccCCCCeEEEEecCCC----HHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC-C
Q 023703           89 EPVEENDKYLSSWSVLDIGTGNG----LLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD-T  160 (278)
Q Consensus        89 ~~~~~~~~~~~~~~vLDiGcG~G----~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~-~  160 (278)
                      +++..+..-...+.|++..|+.|    .+++..|.+  | .++++|-..+......++.+...++.+ ++|+.++..+ .
T Consensus        31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~Tg-GR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~  109 (218)
T PF07279_consen   31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTG-GRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEV  109 (218)
T ss_pred             HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHH
Confidence            34444444445568999976644    334444444  4 379999999888888888887777655 6888888543 2


Q ss_pred             c-cCCCccEEEeC
Q 023703          161 K-LERQFQLVMDK  172 (278)
Q Consensus       161 ~-~~~~fD~v~~~  172 (278)
                      . .-...|+++.+
T Consensus       110 ~~~~~~iDF~vVD  122 (218)
T PF07279_consen  110 MPGLKGIDFVVVD  122 (218)
T ss_pred             HhhccCCCEEEEe
Confidence            2 12457776643

The function of this family is unknown.

>PRK06701 short chain dehydrogenase; Provisional

Probab=91.51  E-value=4  Score=34.69  Aligned_cols=109  Identities=15%  Similarity=0.181  Sum_probs=62.5

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh-HHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      ++++||-.|++.|   .++..++++|+ +|+.++.++ ...+.....++..+ .++.++.+|+.+...           -
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4678888887655   34555666675 788888764 33333333343333 357788999876421           1


Q ss_pred             CCccEEEeCCcccee--ccCCCC-----------hhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAI--GLHPDG-----------PLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~--~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.|+++.+......  .+....           ......+++.+.+.++++|.+++.+
T Consensus       123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is  181 (290)
T PRK06701        123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG  181 (290)
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            467888866543211  011111           1122445566677777778777654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=91.28  E-value=1.9  Score=37.22  Aligned_cols=96  Identities=25%  Similarity=0.305  Sum_probs=56.7

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-----CccCCCcc
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----TKLERQFQ  167 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-----~~~~~~fD  167 (278)
                      .+..++.+||-+|+|. |..+..+++. |...+++++.++...+.+++.    +..  .++..+-.+     ......+|
T Consensus       155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~vd  228 (334)
T cd08234         155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT--ETVDPSREDPEAQKEDNPYGFD  228 (334)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe--EEecCCCCCHHHHHHhcCCCCc
Confidence            3456778999998642 4444555555 653489999998887777542    222  222211111     01235688


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++..-..             ...+..+.+.|+++|.++...
T Consensus       229 ~v~~~~~~-------------~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         229 VVIEATGV-------------PKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             EEEECCCC-------------hHHHHHHHHHHhcCCEEEEEe
Confidence            88863211             123367788999999998764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=90.95  E-value=3.2  Score=32.69  Aligned_cols=107  Identities=21%  Similarity=0.354  Sum_probs=65.1

Q ss_pred             eEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-------CC-C---------cceEEEEccccCCcc
Q 023703          102 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG-F---------SCIKFLVDDVLDTKL  162 (278)
Q Consensus       102 ~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-------~~-~---------~~~~~~~~d~~~~~~  162 (278)
                      +|.-+|+|+=  .++..++..|. +|+.+|.+++.++.+++.+..       .+ +         .++. ...|+.+.  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence            3556777654  34455566676 899999999999988877654       11 1         1232 23444332  


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                       ...|+|+..     +   +++......+++++.+++.|+.+|...+.+.+..++...+
T Consensus        77 -~~adlViEa-----i---~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~  126 (180)
T PF02737_consen   77 -VDADLVIEA-----I---PEDLELKQELFAELDEICPPDTILASNTSSLSISELAAAL  126 (180)
T ss_dssp             -CTESEEEE------S----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTS
T ss_pred             -hhhheehhh-----c---cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhcc
Confidence             256788753     2   2334466788899999999999988888877777666544

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=90.80  E-value=2.6  Score=32.81  Aligned_cols=107  Identities=15%  Similarity=0.163  Sum_probs=63.9

Q ss_pred             EecCCCHHHHHHhhC-C-CCcEEEEeCChH--HHHHH---HHHhhhCCCcce-EEEEccccCCc-----cCCCccEEEeC
Q 023703          106 IGTGNGLLLQELSKQ-G-FSDLTGVDYSED--AINLA---QSLANRDGFSCI-KFLVDDVLDTK-----LERQFQLVMDK  172 (278)
Q Consensus       106 iGcG~G~~~~~l~~~-~-~~~v~~~D~s~~--~i~~a---~~~~~~~~~~~~-~~~~~d~~~~~-----~~~~fD~v~~~  172 (278)
                      +|=|.=.++..|+.. + ..+++++-+...  ..+.-   ..++....-.++ -....|+.++.     ...+||.|+-|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            566666788888887 4 446777655543  33222   233333211122 33556776653     24789999987


Q ss_pred             CccceeccCC-CC-------hhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          173 GTLDAIGLHP-DG-------PLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       173 ~~~~~~~~~~-~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      .|-..  ... ..       ..-...+++.+.++|+++|.+.++......
T Consensus        83 FPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p  130 (166)
T PF10354_consen   83 FPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP  130 (166)
T ss_pred             CCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence            66322  111 00       123358889999999999999999766654

>PRK08265 short chain dehydrogenase; Provisional

Probab=90.72  E-value=6.3  Score=32.74  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..+++.|+ +|+.+|.++...+...+..   + .++.++.+|+.+...           .+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   79 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFG   79 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4568888886555   34455666676 8999999876555443322   2 357888999987521           14


Q ss_pred             CccEEEeCCc
Q 023703          165 QFQLVMDKGT  174 (278)
Q Consensus       165 ~fD~v~~~~~  174 (278)
                      +.|+++.+..
T Consensus        80 ~id~lv~~ag   89 (261)
T PRK08265         80 RVDILVNLAC   89 (261)
T ss_pred             CCCEEEECCC
Confidence            6898887654

>PLN02740 Alcohol dehydrogenase-like

Probab=90.67  E-value=1.2  Score=39.45  Aligned_cols=97  Identities=20%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc-----ccCC---ccCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD-----VLDT---KLER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d-----~~~~---~~~~  164 (278)
                      ....++.+||-+|||. |..+..+++. |..+|+++|.++.-++.+++    .|.+.  ++...     ..+.   ...+
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~~~~  267 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREMTGG  267 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHHhCC
Confidence            3456788999998742 1233344444 65479999999998888865    33322  22111     1110   0122


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  210 (278)
                      .+|+++....-             ...+......+++| |++++...
T Consensus       268 g~dvvid~~G~-------------~~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        268 GVDYSFECAGN-------------VEVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             CCCEEEECCCC-------------hHHHHHHHHhhhcCCCEEEEEcc
Confidence            68888863221             11236677788886 98877643

>PRK07806 short chain dehydrogenase; Provisional

Probab=90.32  E-value=7.7  Score=31.72  Aligned_cols=109  Identities=11%  Similarity=0.047  Sum_probs=59.5

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh-HHHHHHHHHhhhCCCcceEEEEccccCCcc-----C------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~------  163 (278)
                      +++++|-.|+..|   .+...++..|+ +|++++.+. ...+.....++..+ .++.++.+|+.+...     .      
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            4568998887544   23334455675 788887654 33343333333333 357788899887421     1      


Q ss_pred             CCccEEEeCCccceec-cCC-----CChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIG-LHP-----DGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~-~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +..|+++.+....... ..+     .+......+++.+.+.++.+|.+++.+
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence            3578888665321100 000     111123455677777776677766654

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=90.26  E-value=1.6  Score=37.99  Aligned_cols=98  Identities=21%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             cccCCCCeEEEEecCC--CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc----cCCCc
Q 023703           95 DKYLSSWSVLDIGTGN--GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK----LERQF  166 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~----~~~~f  166 (278)
                      .+.+++.+||-.|...  |.++..|++. |. .++++--+++-.+.+++    .|.+. +.+...|+.+..    ....+
T Consensus       138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gv  212 (326)
T COG0604         138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGV  212 (326)
T ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence            3457789999999644  4778888887 65 67777777766665554    33222 344444443321    12469


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      |+|+..-.-              ..+....+.|+++|+++.....
T Consensus       213 Dvv~D~vG~--------------~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         213 DVVLDTVGG--------------DTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             eEEEECCCH--------------HHHHHHHHHhccCCEEEEEecC
Confidence            999863221              2236688889999999887543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.24  E-value=3.6  Score=35.08  Aligned_cols=108  Identities=17%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC----------CC----------cceEEEEcccc
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GF----------SCIKFLVDDVL  158 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~----------~~----------~~~~~~~~d~~  158 (278)
                      .+|.=||+|.=  .++..++..|. +|+.+|.++..++.+++.....          +.          .++.+ ..|..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSYE   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCHH
Confidence            36888898843  45556666776 8999999999998776543321          10          00111 11111


Q ss_pred             CCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          159 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       159 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                         .-...|+|+..     +   ++.......+++++.+.++|+.+++..+......++...+
T Consensus        82 ---~~~~aDlViea-----v---~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~  133 (291)
T PRK06035         82 ---SLSDADFIVEA-----V---PEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATAL  133 (291)
T ss_pred             ---HhCCCCEEEEc-----C---cCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence               11345777753     2   1222234566788888888887665444444445444433

>PRK12939 short chain dehydrogenase; Provisional

Probab=90.22  E-value=4.5  Score=33.10  Aligned_cols=73  Identities=11%  Similarity=0.034  Sum_probs=47.4

Q ss_pred             CCCeEEEEecCCCHHHHHH----hhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l----~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      +++++|=.|+ +|.++..+    +++|+ +|++++.++..++...+.++..+ .++.++.+|+.+...           -
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4568887775 44444444    44575 79999988876666555554433 368888999987421           1


Q ss_pred             CCccEEEeCCc
Q 023703          164 RQFQLVMDKGT  174 (278)
Q Consensus       164 ~~fD~v~~~~~  174 (278)
                      ++.|+++.+..
T Consensus        83 ~~id~vi~~ag   93 (250)
T PRK12939         83 GGLDGLVNNAG   93 (250)
T ss_pred             CCCCEEEECCC
Confidence            46888886643

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=90.20  E-value=0.57  Score=40.91  Aligned_cols=97  Identities=21%  Similarity=0.267  Sum_probs=53.6

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEcccc---CCccCCCcc-E
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVL---DTKLERQFQ-L  168 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~---~~~~~~~fD-~  168 (278)
                      ...++.+||-.|||. |..+..+++. |...|++++.++...+.+++    .|... +.....+..   .......+| +
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~  232 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQL  232 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence            345778999988643 2233344444 65458999999988877754    23211 111111100   011123566 5


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++..     ..       . ...+....+.|++||.+++..
T Consensus       233 v~d~-----~G-------~-~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        233 ILET-----AG-------V-PQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             EEEC-----CC-------C-HHHHHHHHHHhhcCCEEEEEc
Confidence            5532     11       1 123477889999999998875

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.16  E-value=0.57  Score=40.67  Aligned_cols=98  Identities=26%  Similarity=0.247  Sum_probs=55.0

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccc---cCCccCCCccEE
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV---LDTKLERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~---~~~~~~~~fD~v  169 (278)
                      ...++.+||-+|+|. |..+..+++. |..+|++++.++...+.+++    .|... +.....+.   .+......+|++
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~v  235 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADVA  235 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCEE
Confidence            345688999987642 1233334444 65449999999988877754    23221 11111110   011112368988


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +....-             ...+....+.|+++|.+++...
T Consensus       236 id~~g~-------------~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         236 IECSGN-------------TAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             EECCCC-------------HHHHHHHHHHhhcCCEEEEEcC
Confidence            853211             1122567788999999987653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.15  E-value=2.5  Score=35.96  Aligned_cols=107  Identities=13%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             eEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------C-C---------cceEEEEccccCCcc
Q 023703          102 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDTKL  162 (278)
Q Consensus       102 ~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~-~---------~~~~~~~~d~~~~~~  162 (278)
                      +|.=||+|.=  .++..++..|+ +|+.+|.++..++.+.++....       + +         .++. ...|..+  .
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~--~   78 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKA--A   78 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHH--h
Confidence            6778888742  34555666676 7999999999999887643211       0 0         0111 1122211  1


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  220 (278)
                      -...|+|+..-+        .+......++.++.+.++|+.++...+.+.+...+.+.
T Consensus        79 ~~~aD~Vi~avp--------e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~  128 (288)
T PRK09260         79 VADADLVIEAVP--------EKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASF  128 (288)
T ss_pred             hcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhh
Confidence            134577775321        22223345667788888888776666555555554443

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=90.13  E-value=1.4  Score=38.29  Aligned_cols=98  Identities=19%  Similarity=0.285  Sum_probs=57.3

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEcc-------ccCCccCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD-------VLDTKLER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d-------~~~~~~~~  164 (278)
                      ....++.+||-.|+|. |..+..+++. |...|+.++.++...+.+++.    +... +.....+       +.......
T Consensus       158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~  233 (343)
T cd05285         158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGK  233 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCC
Confidence            4456788888877654 4555556665 653489998888877776542    3222 1111111       11111234


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+|+++.....             ...+....+.|+++|+++...
T Consensus       234 ~~d~vld~~g~-------------~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         234 GPDVVIECTGA-------------ESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             CCCEEEECCCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence            58998864221             112367888999999988764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=90.00  E-value=2.3  Score=35.23  Aligned_cols=118  Identities=12%  Similarity=0.102  Sum_probs=65.8

Q ss_pred             hhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-----ccCCC
Q 023703           91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQ  165 (278)
Q Consensus        91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~  165 (278)
                      +..+...+++.. |..=.|+=.++..+.+.. .+.+.+|+-+.-.+..++++...  .++.++..|..+.     ++..+
T Consensus        50 l~~v~~~n~~~~-l~~YPGSP~ia~~llR~q-Drl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~~r  125 (245)
T PF04378_consen   50 LDAVRALNPDGE-LRFYPGSPAIAARLLREQ-DRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPPER  125 (245)
T ss_dssp             HHHHHHHSSSSS---EEE-HHHHHHHHS-TT-SEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-TTS
T ss_pred             HHHHHHhccCCC-cCcCCCCHHHHHHhCCcc-ceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCCCC
Confidence            333333334333 677778778888888775 58999999999999998887653  4799999998763     34455


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhccc--CCcEEEEEecCCChHHHHH
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA--PGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~  219 (278)
                      =-+|+..++|+.-.       +...+...+.+.+|  |.|++++=-+-........
T Consensus       126 RglVLIDPpYE~~~-------dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~  174 (245)
T PF04378_consen  126 RGLVLIDPPYEQKD-------DYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDR  174 (245)
T ss_dssp             -EEEEE-----STT-------HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHH
T ss_pred             CeEEEECCCCCCch-------HHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHH
Confidence            56888888876332       45445555555554  7888777666555544333

; PDB: 2OO3_A.

>PRK07109 short chain dehydrogenase; Provisional

Probab=89.90  E-value=5.9  Score=34.49  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=51.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..+++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           -+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g-~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG-GEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            4567888887555   23445566676 79999999888777766665555 357788999877421           24


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        85 ~iD~lInnAg~   95 (334)
T PRK07109         85 PIDTWVNNAMV   95 (334)
T ss_pred             CCCEEEECCCc
Confidence            78998877543

>PRK08324 short chain dehydrogenase; Validated

Probab=89.86  E-value=4  Score=39.43  Aligned_cols=108  Identities=16%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..+++.|. +|+.+|.++...+.+...+...  .++.++.+|+.+...           .+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5678888886544   23344555676 8999999988777665544332  357888899876421           24


Q ss_pred             CccEEEeCCccceec-cCCCChh-----------hHHHHHHHHHhcccC---CcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIG-LHPDGPL-----------KRIMYWDSVSKLVAP---GGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~-~~~~~~~-----------~~~~~l~~~~~~Lkp---gG~l~~~~  209 (278)
                      ++|+++.+....... +......           ....+++.+.+.+++   +|.+++.+
T Consensus       498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            689998765432110 0000111           123445666666665   67777654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.70  E-value=2  Score=36.48  Aligned_cols=107  Identities=19%  Similarity=0.277  Sum_probs=62.7

Q ss_pred             eEEEEecCC--CHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh-------hCCC-c---------ceEEEEccccCCcc
Q 023703          102 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGF-S---------CIKFLVDDVLDTKL  162 (278)
Q Consensus       102 ~vLDiGcG~--G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~-------~~~~-~---------~~~~~~~d~~~~~~  162 (278)
                      +|.=||+|.  +.++..++..|. +|+++|.++..++.+++++.       ..+. .         ++.+ ..|...   
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---   79 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---   79 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence            577788874  355566667776 89999999999876654322       2221 0         1111 222211   


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      -...|+|+..-        ++.......+++++.+.++|+..+...+...+...+...+
T Consensus        80 ~~~aDlVi~av--------~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~  130 (282)
T PRK05808         80 LKDADLVIEAA--------TENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAAT  130 (282)
T ss_pred             hccCCeeeecc--------cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhh
Confidence            23467777531        1222234577788999999988775555555555554443

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=89.68  E-value=1.6  Score=38.15  Aligned_cols=97  Identities=19%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccE
Q 023703           96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQL  168 (278)
Q Consensus        96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~  168 (278)
                      ...++.+||-.|+| .|..+..+++. |...++++|.++...+.+++    .|... +.....+...    ......+|+
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~  238 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDA  238 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence            45677889988764 22344445554 66569999999887777764    33221 1111111111    111245888


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++....-             ...+..+.++|+++|+++...
T Consensus       239 vld~~g~-------------~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         239 VIIAGGG-------------QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             EEECCCC-------------HHHHHHHHHHhhcCCEEEEec
Confidence            8853110             123377888899999988754

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=89.63  E-value=1.1  Score=39.27  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=58.9

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc-cccCC---ccCCCcc
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD-DVLDT---KLERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~-d~~~~---~~~~~fD  167 (278)
                      ...++.+||-.|+  |.|..+..+++. |. +|++++.++.-.+.+++.   .|... +..... +..+.   ...+.+|
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gvD  230 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGID  230 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCcE
Confidence            4567889999998  356677777776 65 799999998877776532   23322 111111 11110   0123588


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++..-.            .  ..+..+.++|+++|++++..
T Consensus       231 ~v~d~vG------------~--~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        231 IYFDNVG------------G--DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             EEEECCC------------H--HHHHHHHHHhccCCEEEEEC
Confidence            8875311            1  13367888999999998764

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.61  E-value=1  Score=40.03  Aligned_cols=63  Identities=13%  Similarity=0.255  Sum_probs=51.3

Q ss_pred             CCcceEEEEccccCCc---cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          146 GFSCIKFLVDDVLDTK---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       146 ~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++++++++.+++.+..   +++++|.++....+|++.     +......++++.+.++|||++++-+...+
T Consensus       273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~-----~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMD-----PEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCC-----HHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            4467999999998853   368999999888877775     56778888999999999999999875543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK08589 short chain dehydrogenase; Validated

Probab=89.60  E-value=9.1  Score=32.04  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=48.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|-.|++.|   .++..+++.|+ +|+.++.+ ..++...+.+...+ .++.++.+|+.+...           .+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNG-GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4668888888766   34555666775 89999988 44444433343333 257788899877521           25


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus        82 ~id~li~~Ag~   92 (272)
T PRK08589         82 RVDVLFNNAGV   92 (272)
T ss_pred             CcCEEEECCCC
Confidence            68999887654

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.29  E-value=11  Score=31.19  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             CCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------c
Q 023703           99 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L  162 (278)
Q Consensus        99 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~  162 (278)
                      .++++|-.|+++  |   .++..+++.|+ +|+.++.++...+.+++..+..  ..+.++.+|+.+..           .
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHH
Confidence            467899999875  3   34445566675 7888888865443333332222  23456788887642           0


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+..+
T Consensus        86 ~g~ld~lv~nAg~   98 (258)
T PRK07533         86 WGRLDFLLHSIAF   98 (258)
T ss_pred             cCCCCEEEEcCcc
Confidence            2578999987644

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=89.29  E-value=0.62  Score=40.47  Aligned_cols=97  Identities=22%  Similarity=0.289  Sum_probs=55.6

Q ss_pred             ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccE
Q 023703           96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQL  168 (278)
Q Consensus        96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~  168 (278)
                      +..++.+||..|+| .|..+..+++. |...+++++.++...+.+++.    +... +.....+..+    ....+.+|+
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~  239 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDC  239 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence            44677888887654 24455556665 544788998888777766542    2111 1111111111    112256888


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++..-..             ...+..+.+.|+++|+++...
T Consensus       240 vld~~g~-------------~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         240 VIEAVGF-------------EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             EEEccCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence            8853111             123477888999999988654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=89.28  E-value=2.4  Score=36.48  Aligned_cols=95  Identities=17%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCCccCCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      ...++.+||-.||| .|..+..+++. |. +|++++.++...+.+++.    +...+ .....+.... ..+.+|+++..
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~-~~~~~d~vi~~  232 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL----GADEVVDSGAELDEQA-AAGGADVILVT  232 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----CCcEEeccCCcchHHh-ccCCCCEEEEC
Confidence            44677889999886 55555555655 65 799999999888777442    21111 1100011000 12457888753


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..-             ...+..+.+.|+++|.++...
T Consensus       233 ~~~-------------~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         233 VVS-------------GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             CCc-------------HHHHHHHHHhcccCCEEEEEC
Confidence            110             112367788999999998764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.21  E-value=4  Score=35.42  Aligned_cols=109  Identities=11%  Similarity=0.223  Sum_probs=64.1

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-------CCCc------ceEEEEccccCCccCCC
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DGFS------CIKFLVDDVLDTKLERQ  165 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-------~~~~------~~~~~~~d~~~~~~~~~  165 (278)
                      .+|.-||+|+=  .++..++..|+ +|+..|.++..++.++..+..       .+..      ++.+. .|+.+  .-..
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--av~~   83 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--CVAD   83 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH--HhcC
Confidence            47888999843  45556677786 899999999988876654331       1110      11111 11110  1134


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      .|+|+..-        +++..-...+++++.+.++|+.++...+......++...+
T Consensus        84 aDlViEav--------pE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~  131 (321)
T PRK07066         84 ADFIQESA--------PEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARA  131 (321)
T ss_pred             CCEEEECC--------cCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhc
Confidence            67777632        2333345567789999999988555555544445555433

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.14  E-value=2.7  Score=39.94  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=59.8

Q ss_pred             CeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEe
Q 023703          101 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD  171 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~  171 (278)
                      .+|+=+|+  |.++..+++    ++. +++.+|.+++.++.+++    .   ....+.+|..+...     -++.|.++.
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGF--GRFGQVIGRLLMANKM-RITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVI  470 (601)
T ss_pred             CCEEEecC--chHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence            35665555  556665554    354 89999999999998875    2   46788999987531     245677665


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  217 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  217 (278)
                      .-         ++....... ....+.+.|+..++....+..+.+.
T Consensus       471 ~~---------~d~~~n~~i-~~~~r~~~p~~~IiaRa~~~~~~~~  506 (601)
T PRK03659        471 TC---------NEPEDTMKI-VELCQQHFPHLHILARARGRVEAHE  506 (601)
T ss_pred             Ee---------CCHHHHHHH-HHHHHHHCCCCeEEEEeCCHHHHHH
Confidence            21         111222222 3344557788888877665544433

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.11  E-value=2.5  Score=35.95  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=60.5

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cC
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~  163 (278)
                      -.+..||-=|.|+|   .++..++++|+ ++...|+++...+...+..+..|  .+....+|+.+..           .-
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            36789999999998   57788888886 89999999999888888877665  6888999998752           13


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      +..|+++.|..+
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            678999988755

>PRK06181 short chain dehydrogenase; Provisional

Probab=89.10  E-value=11  Score=31.22  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=46.2

Q ss_pred             CeEEEEecCCCHHHH----HHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCC
Q 023703          101 WSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ  165 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~----~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~  165 (278)
                      ++||-.|+.. .++.    .++..|+ +|++++.++...+...+.+...+ .++.+..+|+.+...           -++
T Consensus         2 ~~vlVtGasg-~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          2 KVVIITGASE-GIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG-GEALVVPTDVSDAEACERLIEAAVARFGG   78 (263)
T ss_pred             CEEEEecCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            3677777544 4444    3455575 89999999877666655554444 357888999877531           136


Q ss_pred             ccEEEeCCc
Q 023703          166 FQLVMDKGT  174 (278)
Q Consensus       166 fD~v~~~~~  174 (278)
                      .|+++.+..
T Consensus        79 id~vi~~ag   87 (263)
T PRK06181         79 IDILVNNAG   87 (263)
T ss_pred             CCEEEECCC
Confidence            788887653

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=88.89  E-value=1.1  Score=38.17  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  145 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~  145 (278)
                      ...++..|||..+|+|..+......| ...+|+|+++..++.+.+++...
T Consensus       219 ~s~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         219 YSFPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             cCCCCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHHHHHHHHHHhh
Confidence            34678899999999999999998886 58999999999999999988754

>PRK09072 short chain dehydrogenase; Provisional

Probab=88.87  E-value=8.9  Score=31.80  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------CCC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ  165 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~~  165 (278)
                      ++.++|=.|++.|   .++..++++|+ +|++++.++..++.....+. .+ .++.++.+|+.+...          .+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YP-GRHRWVVADLTSEAGREAVLARAREMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh-cC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence            4567888887765   34555666786 79999999887766655442 22 358888999987531          145


Q ss_pred             ccEEEeCCcc
Q 023703          166 FQLVMDKGTL  175 (278)
Q Consensus       166 fD~v~~~~~~  175 (278)
                      .|.++.+...
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            7888876543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=88.86  E-value=6.8  Score=34.84  Aligned_cols=99  Identities=15%  Similarity=0.036  Sum_probs=64.7

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceeccC
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLH  181 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~  181 (278)
                      +||-++=.-|.++..++..+..  ...| |-.+-...+.|+..++++.-.+...+..+ .+++.+|+|+..     +   
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~~--~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~~-~~~~~~d~vl~~-----~---  114 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKPY--SIGD-SYISELATRENLRLNGIDESSVKFLDSTA-DYPQQPGVVLIK-----V---  114 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCCC--eeeh-HHHHHHHHHHHHHHcCCCcccceeecccc-cccCCCCEEEEE-----e---
Confidence            8999999999999999976432  2233 44555567888888887532222333332 234568988863     2   


Q ss_pred             CCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          182 PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       182 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      |.........+..+..+|.||+.++......
T Consensus       115 PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k  145 (378)
T PRK15001        115 PKTLALLEQQLRALRKVVTSDTRIIAGAKAR  145 (378)
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence            1222355566788999999999987665443

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=88.80  E-value=1.4  Score=39.24  Aligned_cols=51  Identities=20%  Similarity=0.055  Sum_probs=36.8

Q ss_pred             hhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh
Q 023703           92 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  143 (278)
Q Consensus        92 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~  143 (278)
                      ..+.++.++.+||-|.+|.......+.. +.++|++||+||..+...+-+..
T Consensus        28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   28 MEALNIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHhCCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence            3445667888999998765555555444 45799999999998887765543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=88.78  E-value=2.4  Score=37.03  Aligned_cols=44  Identities=18%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHH
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  140 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~  140 (278)
                      ...++.+||-.|||. |..+..+++. |. +|+++|.++.-++.+++
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence            346788999999844 4455555555 65 79999999998887765

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=88.69  E-value=1.7  Score=41.71  Aligned_cols=110  Identities=12%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhh-------C-C-----CCcEEEEeCCh---HHHHHH-----------HHHhhh-----CC
Q 023703           99 SSWSVLDIGTGNGLLLQELSK-------Q-G-----FSDLTGVDYSE---DAINLA-----------QSLANR-----DG  146 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~-------~-~-----~~~v~~~D~s~---~~i~~a-----------~~~~~~-----~~  146 (278)
                      +.-+|+|+|-|+|.......+       . .     .-+++++|..|   ..+..+           ++..+.     .|
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            346899999999976554431       1 1     12789999754   222222           121111     12


Q ss_pred             C-------c--ceEEEEccccCCcc--CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          147 F-------S--CIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       147 ~-------~--~~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +       .  .+++..+|+.+...  ...+|+++.++-    .-......=...+++.+.++++|||++.-.+...
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F----sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~  209 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF----APAKNPDMWSPNLFNALARLARPGATLATFTSAG  209 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC----CCccChhhccHHHHHHHHHHhCCCCEEEEeehHH
Confidence            1       1  34566788765422  356888886532    1111112233577899999999999988665433

>PLN02827 Alcohol dehydrogenase-like

Probab=88.63  E-value=2.2  Score=37.84  Aligned_cols=99  Identities=20%  Similarity=0.169  Sum_probs=55.2

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEE--ccccCC-c--cCCCc
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV--DDVLDT-K--LERQF  166 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~--~d~~~~-~--~~~~f  166 (278)
                      ....++.+||-.|+|. |.++..+++. |...|+++|.++...+.+++    .|.+. +....  .+.... .  ..+.+
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~  264 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA  264 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence            3456788999997632 2233334443 66569999999988777754    34321 11111  011110 0  12358


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  210 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  210 (278)
                      |+++..-.-             ...+....+.+++| |++++...
T Consensus       265 d~vid~~G~-------------~~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        265 DYSFECVGD-------------TGIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             CEEEECCCC-------------hHHHHHHHHhhccCCCEEEEECC
Confidence            888753211             11236678888998 99987543

>cd08293 PTGR2 Prostaglandin reductase

Probab=88.47  E-value=3.4  Score=35.82  Aligned_cols=96  Identities=17%  Similarity=0.242  Sum_probs=56.7

Q ss_pred             cCCC--CeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCC---ccCCCcc
Q 023703           97 YLSS--WSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDT---KLERQFQ  167 (278)
Q Consensus        97 ~~~~--~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~---~~~~~fD  167 (278)
                      ..++  .+||=.|+  |.|..+..+++. |..+|++++.++...+.+++.   .|.+.+ .....+..+.   ..++.+|
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~gvd  226 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPEGVD  226 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCCCce
Confidence            4444  78998886  455666667766 654799999998877776653   233221 1111111110   0124688


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++..-.-           .   .+..+.++|+++|+++...
T Consensus       227 ~vid~~g~-----------~---~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         227 VYFDNVGG-----------E---ISDTVISQMNENSHIILCG  254 (345)
T ss_pred             EEEECCCc-----------H---HHHHHHHHhccCCEEEEEe
Confidence            88753110           1   1267788999999998753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.44  E-value=1.6  Score=36.41  Aligned_cols=70  Identities=16%  Similarity=0.164  Sum_probs=53.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      +.++....|+|+-.|.++-.|.+++- .|+++|-.+-+-...     ..  ..++....|.+.+.+ ..+.|-.+|..+
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~-----dt--g~v~h~r~DGfk~~P~r~~idWmVCDmV  279 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM-----DT--GQVTHLREDGFKFRPTRSNIDWMVCDMV  279 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh-----cc--cceeeeeccCcccccCCCCCceEEeehh
Confidence            46888999999999999999999975 899999765432222     22  358888899988766 577888887644

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.24  E-value=11  Score=32.17  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------CC----------cceEEEEccccCCc
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF----------SCIKFLVDDVLDTK  161 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~~----------~~~~~~~~d~~~~~  161 (278)
                      .+|.=||+|.-  .++..++..|. +|+..|.+++.++.+.+....+       +.          .++.+ ..|...  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence            46888888854  34555666676 8999999999988765433211       11          11221 122211  


Q ss_pred             cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                       -...|+|+..     +   +.+......+++.+...++|+.+++..+.+.+...
T Consensus        81 -~~~aD~Viea-----v---pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~  126 (292)
T PRK07530         81 -LADCDLVIEA-----A---TEDETVKRKIFAQLCPVLKPEAILATNTSSISITR  126 (292)
T ss_pred             -hcCCCEEEEc-----C---cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence             1346777752     1   12222344666888889999887664444444433

>PRK05872 short chain dehydrogenase; Provisional

Probab=88.23  E-value=10  Score=32.25  Aligned_cols=74  Identities=20%  Similarity=0.224  Sum_probs=48.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..+++.|+ +|+.++.++..++...+.+.. + ..+..+.+|+.+...           .+
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5678998887665   34555666676 899999998877665544421 1 235556688876421           25


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            78999987654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=88.18  E-value=7.7  Score=33.36  Aligned_cols=99  Identities=12%  Similarity=0.120  Sum_probs=55.5

Q ss_pred             CeEEEEecCC--CHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-----ceEEEEccccCCccCCCccEEEeCC
Q 023703          101 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus       101 ~~vLDiGcG~--G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      .+|+-+|+|.  |.++..|++.|. +|+.++-++..++..++.   .|+.     ...............+.||+|+..-
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v   78 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC   78 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence            3789999885  345666777675 799999987666655542   1210     0001111111111234688776421


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      -          ..+....++.+...+.++..++..-..-.
T Consensus        79 K----------~~~~~~al~~l~~~l~~~t~vv~lQNGv~  108 (305)
T PRK05708         79 K----------AYDAEPAVASLAHRLAPGAELLLLQNGLG  108 (305)
T ss_pred             C----------HHhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence            1          11344566888899999987766543333

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=87.99  E-value=5.6  Score=35.32  Aligned_cols=113  Identities=17%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             CeEEEEecCCCH--HHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC------------Cc--c--
Q 023703          101 WSVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD------------TK--L--  162 (278)
Q Consensus       101 ~~vLDiGcG~G~--~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~------------~~--~--  162 (278)
                      .+|--+|-|-=.  ++..++..|+ +|+|+|+++..++...+.       ...+..-+...            ..  +  
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G-------~~~i~e~~~~~~v~~~v~~g~lraTtd~~~   81 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRG-------ESYIEEPDLDEVVKEAVESGKLRATTDPEE   81 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCC-------cceeecCcHHHHHHHHHhcCCceEecChhh
Confidence            466677665433  2334455676 899999999999877542       12222222211            00  0  


Q ss_pred             CCCccEEE-eCCc-cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe--cCCChHHHHHHHhh
Q 023703          163 ERQFQLVM-DKGT-LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS--CNSTKDELVHEVSN  223 (278)
Q Consensus       163 ~~~fD~v~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~  223 (278)
                      -...|+++ +-++ +..  .+.++........+.+.+.|++|-.+++.+  +..+.+++...+.+
T Consensus        82 l~~~dv~iI~VPTPl~~--~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle  144 (436)
T COG0677          82 LKECDVFIICVPTPLKK--YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE  144 (436)
T ss_pred             cccCCEEEEEecCCcCC--CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence            01345433 3222 221  144555566677799999999999999975  55555666665543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.92  E-value=3.7  Score=34.96  Aligned_cols=108  Identities=16%  Similarity=0.238  Sum_probs=65.4

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------CC----------cceEEEEccccCCc
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF----------SCIKFLVDDVLDTK  161 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~~----------~~~~~~~~d~~~~~  161 (278)
                      .+|-=||+|+=  .++..++..|+ +|+..|.++..++.+++++...       |.          .+++ ...|...  
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--   81 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD--   81 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH--
Confidence            37888999853  45556677786 8999999999999877664321       11          0111 1222211  


Q ss_pred             cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcc-cCCcEEEEEecCCChHHHHHHH
Q 023703          162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~  221 (278)
                       -...|+|+..     +   +++..-...++..+.+++ +|+.++...+...+...+....
T Consensus        82 -~~~~d~ViEa-----v---~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~  133 (286)
T PRK07819         82 -FADRQLVIEA-----V---VEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAAT  133 (286)
T ss_pred             -hCCCCEEEEe-----c---ccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc
Confidence             1346777753     2   233334556778888888 7777666666666666555543

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.89  E-value=2.3  Score=37.49  Aligned_cols=98  Identities=14%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEE--ccccC-C--ccCCCcc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV--DDVLD-T--KLERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~--~d~~~-~--~~~~~fD  167 (278)
                      ...++.+||-.|||. |..+..+++. |..+|+++|.++...+.+++    .|... +....  .+..+ .  ...+.+|
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d  257 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGGVD  257 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCCCC
Confidence            456788999998743 3344455554 65579999999998888865    23221 11110  01101 0  0123578


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  210 (278)
                      +++..-.-             ...+..+.+.++++ |++++...
T Consensus       258 ~vid~~G~-------------~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       258 YSFECIGN-------------VNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             EEEECCCC-------------HHHHHHHHHHhhcCCCeEEEEec
Confidence            88753210             11236677888886 98887653

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=87.84  E-value=0.73  Score=37.27  Aligned_cols=61  Identities=21%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  160 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~  160 (278)
                      ...-|.+||.|.|.++..+...+.++...+++++..+.-.+...+... ..+.++.+|+...
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF  110 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence            345799999999999999999988899999999988887776655433 3578888888764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.76  E-value=15  Score=30.54  Aligned_cols=72  Identities=15%  Similarity=0.058  Sum_probs=43.9

Q ss_pred             CCCeEEEEecCC-CH----HHHHHhhCCCCcEEEEeCCh---HHHHHHHHHhhhCCCcceEEEEccccCCcc--------
Q 023703           99 SSWSVLDIGTGN-GL----LLQELSKQGFSDLTGVDYSE---DAINLAQSLANRDGFSCIKFLVDDVLDTKL--------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~-G~----~~~~l~~~~~~~v~~~D~s~---~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--------  162 (278)
                      .++++|-.|+++ +.    ++..+++.|+ +|+.++.+.   ..++...+...  + .++.++.+|+.+...        
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dv~d~~~v~~~~~~~   81 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--G-QESLLLPCDVTSDEEITACFETI   81 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--C-CceEEEecCCCCHHHHHHHHHHH
Confidence            467899999862 33    4445566676 788876543   33333333221  2 357788899987521        


Q ss_pred             ---CCCccEEEeCCc
Q 023703          163 ---ERQFQLVMDKGT  174 (278)
Q Consensus       163 ---~~~fD~v~~~~~  174 (278)
                         -++.|+++.+..
T Consensus        82 ~~~~g~ld~lv~nag   96 (257)
T PRK08594         82 KEEVGVIHGVAHCIA   96 (257)
T ss_pred             HHhCCCccEEEECcc
Confidence               267899887654

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=87.71  E-value=1.2  Score=38.52  Aligned_cols=96  Identities=14%  Similarity=0.183  Sum_probs=58.8

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc-cccCC---ccCCCc
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD-DVLDT---KLERQF  166 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~-d~~~~---~~~~~f  166 (278)
                      .+..++.+||=.|.  |.|..+..+++. |. +|++++.++...+.+++    .|... +..... +..+.   ...+.+
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gv  208 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGY  208 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCe
Confidence            34567889998884  456677777776 65 79999999888777754    34322 111111 11110   012458


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+++..-.            .  ..+..+.++|+++|+++...
T Consensus       209 dvv~d~~G------------~--~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       209 DCYFDNVG------------G--EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             EEEEECCC------------H--HHHHHHHHHhCcCcEEEEec
Confidence            88875211            1  12367888999999998764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=87.61  E-value=1.1  Score=38.79  Aligned_cols=97  Identities=25%  Similarity=0.310  Sum_probs=55.8

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEcc---ccCCccCCCccEE
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD---VLDTKLERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d---~~~~~~~~~fD~v  169 (278)
                      ...++.+||-.|+|. |..+..+++. |...+++++-++...+.+++    .+... +......   +........+|++
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~v  231 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGADDTINPKEEDVEKVRELTEGRGADLV  231 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEecCccccHHHHHHHhCCCCCCEE
Confidence            445778899988654 4555556655 65349999988887776643    23211 1111111   0111112458888


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +....             ....+..+.++|+++|.++...
T Consensus       232 ld~~g-------------~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         232 IEAAG-------------SPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             EECCC-------------CHHHHHHHHHHhhcCCEEEEEc
Confidence            86311             0112367889999999988764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=87.57  E-value=6.9  Score=33.13  Aligned_cols=82  Identities=20%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             eEEEEecCC--CHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceec
Q 023703          102 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       102 ~vLDiGcG~--G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  179 (278)
                      +|.=||+|.  |.++..+.+.|. +|+++|.++..++.+.+.    +.  +.....+..   .-...|+|+..-+..   
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~--~~~~~~~~~---~~~~aDlVilavp~~---   68 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL--VDEASTDLS---LLKDCDLVILALPIG---   68 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC--cccccCCHh---HhcCCCEEEEcCCHH---
Confidence            467788875  356666666675 899999999888777642    21  111111111   113468887643322   


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCc
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGG  203 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG  203 (278)
                             ....+++++...++|+.
T Consensus        69 -------~~~~~~~~l~~~l~~~~   85 (279)
T PRK07417         69 -------LLLPPSEQLIPALPPEA   85 (279)
T ss_pred             -------HHHHHHHHHHHhCCCCc
Confidence                   33455677878787764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=87.38  E-value=4.1  Score=38.27  Aligned_cols=92  Identities=10%  Similarity=0.077  Sum_probs=55.5

Q ss_pred             CeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEe
Q 023703          101 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD  171 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~  171 (278)
                      .+|+=+|||  .++..+++    +|. +++.+|.+++.++.+++       .+...+.+|..+...     -++.|.++.
T Consensus       418 ~hiiI~G~G--~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~-------~g~~~i~GD~~~~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYG--RVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE-------RGIRAVLGNAANEEIMQLAHLDCARWLLL  487 (558)
T ss_pred             CCEEEECCC--hHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH-------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence            467776665  45555544    454 79999999999888875       256789999988531     246776654


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .-.        + ..+...... ..+...|+..++....+.
T Consensus       488 ~~~--------~-~~~~~~iv~-~~~~~~~~~~iiar~~~~  518 (558)
T PRK10669        488 TIP--------N-GYEAGEIVA-SAREKRPDIEIIARAHYD  518 (558)
T ss_pred             EcC--------C-hHHHHHHHH-HHHHHCCCCeEEEEECCH
Confidence            211        1 111112223 344557877777765443

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=87.29  E-value=12  Score=33.30  Aligned_cols=116  Identities=17%  Similarity=0.196  Sum_probs=62.3

Q ss_pred             hhhhccccCCCCeEEEEecCCC----HHHHHHhhC--CC--CcEEEEeC----ChHHHHHHHHHhhh----CCCcceEEE
Q 023703           90 PVEENDKYLSSWSVLDIGTGNG----LLLQELSKQ--GF--SDLTGVDY----SEDAINLAQSLANR----DGFSCIKFL  153 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G----~~~~~l~~~--~~--~~v~~~D~----s~~~i~~a~~~~~~----~~~~~~~~~  153 (278)
                      +++.+.+. +..+|+|+|.|.|    .+...|+.+  |.  -+||+++.    +...++.+.+++..    .|+ ..+|.
T Consensus       102 IleA~~g~-~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~  179 (374)
T PF03514_consen  102 ILEAFEGE-RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFH  179 (374)
T ss_pred             HHHHhccC-cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEE
Confidence            33433333 5579999999999    455566665  22  28999999    77777777766543    354 34444


Q ss_pred             Ec---cccCCcc---C-CCccEEEeCC--ccceeccCCCChh-hHHHHHHHHHhcccCCcEEEEE
Q 023703          154 VD---DVLDTKL---E-RQFQLVMDKG--TLDAIGLHPDGPL-KRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       154 ~~---d~~~~~~---~-~~fD~v~~~~--~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ..   ++.+..+   . .+=+.++.|.  .++++.-++.... ....+|+.+ +.|+|.-.++..
T Consensus       180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E  243 (374)
T PF03514_consen  180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVE  243 (374)
T ss_pred             ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEe
Confidence            42   3332211   1 1112333333  3344432222222 234455544 467998666554

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=87.24  E-value=1  Score=39.03  Aligned_cols=97  Identities=25%  Similarity=0.307  Sum_probs=57.9

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCcc
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQ  167 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD  167 (278)
                      ....++.+||-.|+|. |..+..+++. |. +|+++..+++..+.+++.    +... +.....+..+    ......+|
T Consensus       155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd  229 (337)
T cd08261         155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGAD  229 (337)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCC
Confidence            4456788999998753 5566666666 64 799998888877777542    2222 1111111111    11234588


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++..-.-             ...+..+.+.|+++|.++...
T Consensus       230 ~vld~~g~-------------~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         230 VVIDATGN-------------PASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             EEEECCCC-------------HHHHHHHHHHHhcCCEEEEEc
Confidence            88863110             112367888999999988654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=87.06  E-value=8.4  Score=32.35  Aligned_cols=105  Identities=14%  Similarity=0.090  Sum_probs=67.2

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCC-hHHHHHHHHHhhhCCC---cceEEEEccccCCc---c-CCCc-----c
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGF---SCIKFLVDDVLDTK---L-ERQF-----Q  167 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s-~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~---~-~~~f-----D  167 (278)
                      ..|+.+|||-=.-...+... . .+..+|++ |..++.-++.+...+.   .+..++..|+.+..   . ...|     -
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt  160 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT  160 (260)
T ss_pred             cEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence            46999999987777666433 2 34444444 5566666666664332   35788888987211   0 1222     3


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++++-+++..+.     ......+++.+.+...||+.+++...+.
T Consensus       161 l~i~EGvl~YL~-----~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       161 AWLWEGLLMYLT-----EEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             eeeecchhhcCC-----HHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            566666654443     5577788899988888999999886554

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.04  E-value=8.3  Score=32.77  Aligned_cols=106  Identities=18%  Similarity=0.265  Sum_probs=59.8

Q ss_pred             eEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC--------CC----------cceEEEEccccCCc
Q 023703          102 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--------GF----------SCIKFLVDDVLDTK  161 (278)
Q Consensus       102 ~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~--------~~----------~~~~~~~~d~~~~~  161 (278)
                      +|.=||+|.-  .++..++..|. +|+.+|.++..++.++++....        .+          .++. ...|..+. 
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a-   81 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA-   81 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH-
Confidence            6888888854  34455566675 8999999999988887653211        00          1121 12222211 


Q ss_pred             cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                       -...|+|+..-+        ........+++++...++++.++...+......++..
T Consensus        82 -~~~aDlVieavp--------e~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~  130 (287)
T PRK08293         82 -VKDADLVIEAVP--------EDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE  130 (287)
T ss_pred             -hcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh
Confidence             134577775322        1222345666888888887776544444444444444

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=86.91  E-value=3  Score=37.46  Aligned_cols=99  Identities=20%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             ccCCCCeEEEEec-C-CCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEc----cccC---
Q 023703           96 KYLSSWSVLDIGT-G-NGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVD----DVLD---  159 (278)
Q Consensus        96 ~~~~~~~vLDiGc-G-~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~----d~~~---  159 (278)
                      ...++.+||=+|+ | .|..+..+++.   |..+|+++|.++.-++.+++.+...    |. ...++..    +..+   
T Consensus       172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v~  250 (410)
T cd08238         172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATLM  250 (410)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHHH
Confidence            3466789998874 3 45666666665   3347999999999999888753211    21 1112211    1111   


Q ss_pred             -CccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          160 -TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       160 -~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                       ......+|+++....-             ...+....+.++++|.+++.
T Consensus       251 ~~t~g~g~D~vid~~g~-------------~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         251 ELTGGQGFDDVFVFVPV-------------PELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHhCCCCCCEEEEcCCC-------------HHHHHHHHHHhccCCeEEEE
Confidence             0112358888753110             11236778889988876654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK08703 short chain dehydrogenase; Provisional

Probab=86.87  E-value=4.9  Score=32.77  Aligned_cols=75  Identities=11%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------------  161 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--------------  161 (278)
                      ++++||-.||+.|   .++..++++|. +|++++.++...+.....+...+...+.+...|+.+..              
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4568999997554   34445555676 79999999877666655544333224556667765321              


Q ss_pred             cCCCccEEEeCCc
Q 023703          162 LERQFQLVMDKGT  174 (278)
Q Consensus       162 ~~~~fD~v~~~~~  174 (278)
                      ..+..|.++.+..
T Consensus        84 ~~~~id~vi~~ag   96 (239)
T PRK08703         84 TQGKLDGIVHCAG   96 (239)
T ss_pred             hCCCCCEEEEecc
Confidence            1146788886654

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=86.87  E-value=1.1  Score=39.37  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=56.3

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCcc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD  167 (278)
                      ...++.+||-.|+|. |..+..+++. |...++++|.++...+.+++    .+..  .++..+-.+..      ....+|
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~~~d  256 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREITGGGVD  256 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHhCCCCc
Confidence            345678898887643 3444455554 66579999999887776654    2221  12221111100      134688


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++..-..             ...+..+.+.|+++|.++....
T Consensus       257 ~vld~~g~-------------~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         257 YALDTTGV-------------PAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             EEEECCCC-------------cHHHHHHHHHhccCCEEEEeCc
Confidence            88853210             0123678888999999887653

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=86.75  E-value=3.5  Score=37.11  Aligned_cols=90  Identities=8%  Similarity=0.035  Sum_probs=54.3

Q ss_pred             cCCCCeEEEEecCCCHHH-HHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLL-QELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~-~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++++|+-+|||.=... ..+++ .|+ +|+.+|.++.-.+.|+.    .|.   ...  +..+  .-...|+|+....
T Consensus       199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e--~v~~aDVVI~atG  266 (413)
T cd00401         199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY---EVM--TMEE--AVKEGDIFVTTTG  266 (413)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC---EEc--cHHH--HHcCCCEEEECCC
Confidence            357899999999873322 22333 366 79999999987777764    332   111  1111  1134688886321


Q ss_pred             cceeccCCCChhhHHHHH-HHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYW-DSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~  211 (278)
                      -            . ..+ ....+.+|+||+++.....
T Consensus       267 ~------------~-~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 N------------K-DIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             C------------H-HHHHHHHHhcCCCCcEEEEeCCC
Confidence            1            1 112 3457899999999887643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05281 TDH Threonine dehydrogenase

Probab=86.61  E-value=3.5  Score=35.79  Aligned_cols=95  Identities=25%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccc---cCCccCCCccEEEe
Q 023703           98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV---LDTKLERQFQLVMD  171 (278)
Q Consensus        98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~---~~~~~~~~fD~v~~  171 (278)
                      .++.+||-.|+|. |..+..+++. |..+|++++-++.-.+.+++    .+... +.....+.   ......+.+|+++.
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld  237 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVVLE  237 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEEEE
Confidence            5677888876543 3444455555 64468888877776666554    23211 11111121   11122356888886


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .-.-             ...+..+.+.|+++|.++...
T Consensus       238 ~~g~-------------~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         238 MSGN-------------PKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             CCCC-------------HHHHHHHHHHhccCCEEEEEc
Confidence            3210             112267788999999988764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.59  E-value=4.8  Score=32.92  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=48.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|-.|++.|   .++..++++|. +|+.++.++..++.+.+.....+ .++.++..|+.+...           .+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTDEEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4668998887544   23334455575 79999999877666655554443 357788899876421           14


Q ss_pred             CccEEEeCCc
Q 023703          165 QFQLVMDKGT  174 (278)
Q Consensus       165 ~fD~v~~~~~  174 (278)
                      +.|.|+.+..
T Consensus        82 ~id~vi~~ag   91 (253)
T PRK08217         82 QLNGLINNAG   91 (253)
T ss_pred             CCCEEEECCC
Confidence            6899987654

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.50  E-value=18  Score=30.37  Aligned_cols=108  Identities=13%  Similarity=0.062  Sum_probs=60.7

Q ss_pred             CCCeEEEEecC--CC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .++.+|-.|++  .|   .++..+++.|+ +|+.++.++...+.+++.....+. . .++.+|+.+...           
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence            46789999985  23   24555666786 788888885433333333333332 2 567889887521           


Q ss_pred             CCCccEEEeCCcccee-----ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .++.|+++.+..+..-     .+......+.           ..+.+.+...|+.+|.++..+
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is  143 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS  143 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence            2678999987654210     0111111111           233466667777778776654

>PRK06128 oxidoreductase; Provisional

Probab=86.47  E-value=17  Score=30.96  Aligned_cols=109  Identities=13%  Similarity=0.141  Sum_probs=61.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChH--HHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED--AINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~--~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .+++||-.|++.|   .++..+++.|+ +|+.+..++.  ..+...+.+...+ .++.++.+|+.+...           
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~  131 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG-RKAVALPGDLKDEAFCRQLVERAVKE  131 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence            4678999997555   34455666676 6777665432  2333333333333 257788899987421           


Q ss_pred             CCCccEEEeCCccceec--cCCCChh-----------hHHHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAIG--LHPDGPL-----------KRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~--~~~~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      -++.|+++.+.......  +.....+           ....+++.+.+.|+++|.++..+
T Consensus       132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s  191 (300)
T PRK06128        132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG  191 (300)
T ss_pred             hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence            14689998876532110  1111111           11245566777778888877753

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=86.46  E-value=6.5  Score=32.23  Aligned_cols=76  Identities=14%  Similarity=0.168  Sum_probs=48.6

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------------
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------------  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------------  161 (278)
                      .++++||-.|+..|   .++..+++.|+ +|++++.++...+...+.+...+..++.++..|+....             
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            36778999996444   23334555575 89999999877766655555444335667777775321             


Q ss_pred             cCCCccEEEeCCc
Q 023703          162 LERQFQLVMDKGT  174 (278)
Q Consensus       162 ~~~~fD~v~~~~~  174 (278)
                      ..++.|.++.+..
T Consensus        89 ~~~~id~vi~~Ag  101 (247)
T PRK08945         89 QFGRLDGVLHNAG  101 (247)
T ss_pred             HhCCCCEEEECCc
Confidence            1246898887654

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.04  E-value=19  Score=30.15  Aligned_cols=74  Identities=22%  Similarity=0.124  Sum_probs=46.8

Q ss_pred             CCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      +++.+|-.|++.  |   .++..|++.|+ +|+.++.++...+..++.....+  ...++.+|+.+...           
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g--~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG--SDFVLPCDVEDIASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC--CceEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899999875  4   45666777786 78888876544443333333223  23467889887521           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+..+
T Consensus        83 ~g~iD~lVnnAG~   95 (271)
T PRK06505         83 WGKLDFVVHAIGF   95 (271)
T ss_pred             hCCCCEEEECCcc
Confidence            2678999987654

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.04  E-value=1.9  Score=36.96  Aligned_cols=46  Identities=26%  Similarity=0.288  Sum_probs=36.0

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHH
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQS  140 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~  140 (278)
                      .+..++.+|.-+|+|.=.++...-.+  |+++++|+|+++.-.+.|++
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~  235 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE  235 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence            44578888999988876555554333  78899999999999999886

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.93  E-value=18  Score=29.80  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=45.5

Q ss_pred             CCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .++++|-.|.++  |   .++..+++.|+ +|+.++.++...+.+++..   + ..+.++.+|+.+...           
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV---D-EEDLLVECDVASDESIERAFATIKER   80 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc---c-CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence            567899888763  3   34556666676 7888887644333333221   1 247788899987420           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      -++.|+++.+..+
T Consensus        81 ~g~iD~lv~nAg~   93 (252)
T PRK06079         81 VGKIDGIVHAIAY   93 (252)
T ss_pred             hCCCCEEEEcccc
Confidence            2578999887654

>PRK08339 short chain dehydrogenase; Provisional

Probab=85.68  E-value=5.1  Score=33.43  Aligned_cols=75  Identities=12%  Similarity=0.153  Sum_probs=51.6

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------CCC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ  165 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~~  165 (278)
                      +++++|-.|++.|   .++..+++.|+ +|+.++.++..++.+.+.+....-.++.++.+|+.+...          .++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4678888888766   45566777786 799999998877766655443211357888999987531          146


Q ss_pred             ccEEEeCCc
Q 023703          166 FQLVMDKGT  174 (278)
Q Consensus       166 fD~v~~~~~  174 (278)
                      .|+++.+..
T Consensus        86 iD~lv~nag   94 (263)
T PRK08339         86 PDIFFFSTG   94 (263)
T ss_pred             CcEEEECCC
Confidence            888887654

>PRK05867 short chain dehydrogenase; Provisional

Probab=85.58  E-value=4.8  Score=33.20  Aligned_cols=75  Identities=12%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|+++|   .++..++++|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           .+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4678999998766   34556666776 79999999887777766655444 357788899876421           15


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        86 ~id~lv~~ag~   96 (253)
T PRK05867         86 GIDIAVCNAGI   96 (253)
T ss_pred             CCCEEEECCCC
Confidence            78998876543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=85.31  E-value=11  Score=32.13  Aligned_cols=106  Identities=14%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh-------hCCC----------cceEEEEccccCCc
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGF----------SCIKFLVDDVLDTK  161 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~-------~~~~----------~~~~~~~~d~~~~~  161 (278)
                      ++|.=||+|.=  .++..++..|. +|+++|.++..++.+++++.       ..+.          ..+. ...+..   
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~---   79 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLE---   79 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHH---
Confidence            46888888742  45555666675 89999999999887665432       1111          0011 111211   


Q ss_pred             cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      .-...|+|+..     +   ++++.....++.++...++|+.+++..+...+...+.+
T Consensus        80 ~~~~aD~Viea-----v---~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~  129 (295)
T PLN02545         80 ELRDADFIIEA-----I---VESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS  129 (295)
T ss_pred             HhCCCCEEEEc-----C---ccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence            11345777752     1   22333455667888888888876654445545444444

>PRK06139 short chain dehydrogenase; Provisional

Probab=85.30  E-value=6.5  Score=34.25  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=52.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  164 (278)
                      ++++||-.|+++|   .++..++++|+ +|+.++.++..++...+.+...+ .++.++..|+.+..           ..+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALG-AEVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            4568888888655   34455666776 79999999988877766665555 25777888987642           025


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      ++|+++.+..+
T Consensus        84 ~iD~lVnnAG~   94 (330)
T PRK06139         84 RIDVWVNNVGV   94 (330)
T ss_pred             CCCEEEECCCc
Confidence            78999987654

>PRK07985 oxidoreductase; Provisional

Probab=85.13  E-value=12  Score=31.72  Aligned_cols=109  Identities=13%  Similarity=0.105  Sum_probs=61.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh--HHHHHHHHHhhhCCCcceEEEEccccCCc-----------c
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE--DAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~--~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~  162 (278)
                      +++++|-.|++.|   .++..|++.|+ +|+.++.+.  ...+...+.....+ .++.++.+|+.+..           .
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECG-RKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcC-CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5678999997655   35556666776 788776542  33444444333333 25778889998742           1


Q ss_pred             CCCccEEEeCCcccee--ccCCCChhh-----------HHHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAI--GLHPDGPLK-----------RIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~--~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      -++.|+++.+......  .+......+           ...+++.+.+.|+.+|.+++.+
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS  185 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS  185 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence            2467888876543110  011111111           1244566666777788877753

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.07  E-value=1.6  Score=38.28  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=64.1

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC---C
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---R  164 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~---~  164 (278)
                      +...+....+|.+|+|+.|-.|.-+.+++..  .-.++.|+|.++.-.+..++.+...|...++...+|......+   .
T Consensus       204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~  283 (413)
T KOG2360|consen  204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFR  283 (413)
T ss_pred             chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCccccc
Confidence            3344445567799999999999888888775  2237999999999999999999888887788889998874322   2


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      ....+++.++.
T Consensus       284 ~v~~iL~Dpsc  294 (413)
T KOG2360|consen  284 DVTYILVDPSC  294 (413)
T ss_pred             ceeEEEeCCCC
Confidence            33456655544

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=85.03  E-value=3.6  Score=36.76  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc---cccC----CccCCCc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLD----TKLERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~---d~~~----~~~~~~f  166 (278)
                      ...++.+||-.|+|. |..+..+++. |...++.+|.++.-++.+++    .|..  .+...   +..+    ......+
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~~~g~  255 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILGEPEV  255 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcCCCCC
Confidence            356777888766642 2233344444 66557778888888888775    3332  12111   1111    1112458


Q ss_pred             cEEEeCCccceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          167 QLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       167 D~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |+++..-...... .+..........++.+.+++++||++++...
T Consensus       256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            8888532211000 0000001112345788899999999998754

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK07904 short chain dehydrogenase; Provisional

Probab=84.92  E-value=5.2  Score=33.17  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=47.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHH-HHHHHHHhhhCCCcceEEEEccccCCcc----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDA-INLAQSLANRDGFSCIKFLVDDVLDTKL----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~-i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~  164 (278)
                      .+++||-.|++.|   .++..++++|..+|+.++.++.. ++.+.+.++..+..++.++.+|+.+...          .+
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            4568999998655   23444455543489999988764 5555444444443368889999876431          14


Q ss_pred             CccEEEeCC
Q 023703          165 QFQLVMDKG  173 (278)
Q Consensus       165 ~fD~v~~~~  173 (278)
                      ..|+++.+.
T Consensus        87 ~id~li~~a   95 (253)
T PRK07904         87 DVDVAIVAF   95 (253)
T ss_pred             CCCEEEEee
Confidence            688877643

>PRK12937 short chain dehydrogenase; Provisional

Probab=84.85  E-value=19  Score=29.17  Aligned_cols=109  Identities=13%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC-hHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s-~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      ++++||-.|++.|   .++..++++|+ +++.+..+ +...+...+.+...+ .++.++..|+.+...           .
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDAAETAF   81 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4568888888554   34445566676 56666543 333333333343333 357888999876421           1


Q ss_pred             CCccEEEeCCcccee-ccCCCChh-----------hHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAI-GLHPDGPL-----------KRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~-~~~~~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.|+++.+...... .+......           ....+++.+.+.++++|.++..+
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  139 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS  139 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence            467888876543211 01111111           11233456666677788877765

>PRK07890 short chain dehydrogenase; Provisional

Probab=84.83  E-value=6.5  Score=32.39  Aligned_cols=74  Identities=14%  Similarity=0.154  Sum_probs=50.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..++.+|+ +|+.++.++...+.........+ .++.++..|+.+...           -+
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4568888887655   34455666786 89999999877766665554433 357889999976421           14


Q ss_pred             CccEEEeCCc
Q 023703          165 QFQLVMDKGT  174 (278)
Q Consensus       165 ~fD~v~~~~~  174 (278)
                      +.|+++.+..
T Consensus        82 ~~d~vi~~ag   91 (258)
T PRK07890         82 RVDALVNNAF   91 (258)
T ss_pred             CccEEEECCc
Confidence            6899887654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=84.80  E-value=7  Score=32.29  Aligned_cols=73  Identities=15%  Similarity=0.110  Sum_probs=49.5

Q ss_pred             CCCeEEEEecCCCHHHHH----HhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~----l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      +++++|-.|+ +|.++..    ++++|+ +|+.++.++...+...+.....+ .++.++.+|+.+...           .
T Consensus        11 ~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5678998885 4544444    444576 89999998877776666554443 257788999987421           1


Q ss_pred             CCccEEEeCCc
Q 023703          164 RQFQLVMDKGT  174 (278)
Q Consensus       164 ~~fD~v~~~~~  174 (278)
                      ++.|.++.+..
T Consensus        88 ~~id~vi~~ag   98 (259)
T PRK08213         88 GHVDILVNNAG   98 (259)
T ss_pred             CCCCEEEECCC
Confidence            46898887654

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=84.56  E-value=3.2  Score=36.04  Aligned_cols=97  Identities=19%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc-cccCC---ccCCCc
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD-DVLDT---KLERQF  166 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~-d~~~~---~~~~~f  166 (278)
                      .+..++.+||-.|+  |.|..+..+++. |. +|++++.++...+.+++.+   |... +..... +..+.   .....+
T Consensus       147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gv  222 (338)
T cd08295         147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGI  222 (338)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCc
Confidence            45578889999886  455666666766 65 7999998888877776532   3222 111111 11110   012467


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+++..     +.       .  ..+..+.++|+++|+++...
T Consensus       223 d~v~d~-----~g-------~--~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         223 DIYFDN-----VG-------G--KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             EEEEEC-----CC-------H--HHHHHHHHHhccCcEEEEec
Confidence            888752     11       1  22367889999999998753

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=84.46  E-value=4.9  Score=35.18  Aligned_cols=93  Identities=19%  Similarity=0.112  Sum_probs=52.8

Q ss_pred             CCCCeEEEEecCCCHHHH---HHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccc-------cCCccCCC
Q 023703           98 LSSWSVLDIGTGNGLLLQ---ELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDV-------LDTKLERQ  165 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~---~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~-------~~~~~~~~  165 (278)
                      .++.+||-.|+  |.++.   .+++. |.++|++++.++.-.+.+++    .|...+ .....+.       ........
T Consensus       176 ~~g~~vlI~g~--g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~  249 (361)
T cd08231         176 GAGDTVVVQGA--GPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRG  249 (361)
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCC
Confidence            46778888875  44444   34444 65479999988887766643    333221 1111111       11111246


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|+++....-             ...+....+.|+++|+++...
T Consensus       250 ~d~vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         250 ADVVIEASGH-------------PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CcEEEECCCC-------------hHHHHHHHHHhccCCEEEEEc
Confidence            8888853210             112367788999999998764

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK07832 short chain dehydrogenase; Provisional

Probab=84.38  E-value=22  Score=29.61  Aligned_cols=72  Identities=19%  Similarity=0.180  Sum_probs=44.0

Q ss_pred             eEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCCcc
Q 023703          102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ  167 (278)
Q Consensus       102 ~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~fD  167 (278)
                      ++|-.|+++|   .++..+++.|+ +|+.++.++..++...+.+...+...+.+..+|+.+...           .++.|
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            4666776544   23444566675 799999888777666555444332224557788876321           24579


Q ss_pred             EEEeCCc
Q 023703          168 LVMDKGT  174 (278)
Q Consensus       168 ~v~~~~~  174 (278)
                      +++.+..
T Consensus        81 ~lv~~ag   87 (272)
T PRK07832         81 VVMNIAG   87 (272)
T ss_pred             EEEECCC
Confidence            8887654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=84.34  E-value=5.3  Score=37.00  Aligned_cols=42  Identities=21%  Similarity=0.168  Sum_probs=30.8

Q ss_pred             CCCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHH
Q 023703           98 LSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQS  140 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~  140 (278)
                      .++.+|+-+|||.=. .+..++.. |+ .|+++|.++..++.++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            456899999998753 33334443 65 79999999998877765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=84.25  E-value=3.6  Score=35.35  Aligned_cols=96  Identities=17%  Similarity=0.242  Sum_probs=58.0

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCC---ccCCCcc
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT---KLERQFQ  167 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~---~~~~~fD  167 (278)
                      .+..++.+||-.|.  |.|..+..+++. |. +|++++.++.-.+.+++    .|... +.....|..+.   .....+|
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence            34567889988874  455666666766 65 79999999888777765    33322 11111111110   0124588


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++..     +.       .  ..+....+.|+++|.++...
T Consensus       214 ~vld~-----~g-------~--~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         214 CYFDN-----VG-------G--EFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             EEEEC-----CC-------H--HHHHHHHHhhccCCEEEEEc
Confidence            88752     11       1  22377888999999998653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=84.13  E-value=6.3  Score=35.59  Aligned_cols=100  Identities=14%  Similarity=0.101  Sum_probs=54.1

Q ss_pred             CeEEEEecCCCH--HHHHHhhCCCCcEEEEeCChHHHHHHHHHhh---------------hCCCcceEEEEccccCCccC
Q 023703          101 WSVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLAN---------------RDGFSCIKFLVDDVLDTKLE  163 (278)
Q Consensus       101 ~~vLDiGcG~G~--~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~---------------~~~~~~~~~~~~d~~~~~~~  163 (278)
                      .+|.=||.|.-.  ++..|++.|+ +|+++|.++..++..+....               ..|  ...+. .+.      
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g--~l~~~-~~~------   73 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG--YLRAT-TTP------   73 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC--ceeee-ccc------
Confidence            367888888543  4445666776 89999999998886432100               011  11111 111      


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +..|+|+..-+-..-.-..++.......++.+.+.|++|.+++..+.
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST  120 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            23566664211100000112223555666888899999887777653

>PRK06172 short chain dehydrogenase; Provisional

Probab=84.10  E-value=6.5  Score=32.32  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           .+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4678999987655   34445566675 79999999887766666555444 358888999976421           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        84 ~id~li~~ag~   94 (253)
T PRK06172         84 RLDYAFNNAGI   94 (253)
T ss_pred             CCCEEEECCCC
Confidence            67999877543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=84.09  E-value=6.6  Score=32.35  Aligned_cols=74  Identities=14%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..++++|+ +|+.++.++..++.....++..+ .++.++.+|+.+...           -+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIADEEAVAAAFARIDAEHG   87 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5678998886554   23444555676 89999999877666655555444 257888999876421           14


Q ss_pred             CccEEEeCCc
Q 023703          165 QFQLVMDKGT  174 (278)
Q Consensus       165 ~fD~v~~~~~  174 (278)
                      +.|.++.+..
T Consensus        88 ~id~vi~~ag   97 (256)
T PRK06124         88 RLDILVNNVG   97 (256)
T ss_pred             CCCEEEECCC
Confidence            6788887654

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=84.04  E-value=3  Score=36.21  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=62.2

Q ss_pred             ccCCCCeEEEEecCCCHHHH-HHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc----cccCCc---cCCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQ-ELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD----DVLDTK---LERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~-~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~----d~~~~~---~~~~f  166 (278)
                      +..++.+|.-+|||.=.++. .-+.. |+.+++++|+++.-+++|++.    |.  .++++.    |+.+..   .++..
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GA--T~~vn~~~~~~vv~~i~~~T~gG~  255 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GA--THFVNPKEVDDVVEAIVELTDGGA  255 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CC--ceeecchhhhhHHHHHHHhcCCCC
Confidence            45788899999997544333 33333 777999999999999999873    32  222322    222111   12345


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  217 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  217 (278)
                      |.++.     ...        ....++.....+.++|..++........++
T Consensus       256 d~~~e-----~~G--------~~~~~~~al~~~~~~G~~v~iGv~~~~~~i  293 (366)
T COG1062         256 DYAFE-----CVG--------NVEVMRQALEATHRGGTSVIIGVAGAGQEI  293 (366)
T ss_pred             CEEEE-----ccC--------CHHHHHHHHHHHhcCCeEEEEecCCCCcee
Confidence            55542     221        112346777778889999988765554443

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=84.00  E-value=5  Score=34.75  Aligned_cols=96  Identities=18%  Similarity=0.267  Sum_probs=53.9

Q ss_pred             CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEcccc----CCccCCCccEEE
Q 023703           98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVL----DTKLERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~----~~~~~~~fD~v~  170 (278)
                      .++.+||-.|+|. |..+..+++. |..+|++++.++...+.+++    .|...+ .....+..    .......+|+++
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~  237 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGMTEGFDVGL  237 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence            4677888777643 3444555554 65468888888877766654    232211 11111110    111234678887


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .....             ...+..+.+.|+++|.++....
T Consensus       238 d~~g~-------------~~~~~~~~~~l~~~G~~v~~g~  264 (341)
T PRK05396        238 EMSGA-------------PSAFRQMLDNMNHGGRIAMLGI  264 (341)
T ss_pred             ECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence            62111             1123678889999999988754

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=83.97  E-value=7  Score=37.29  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             CeEEEEecCCCHHHHHH----hhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEe
Q 023703          101 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD  171 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l----~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~  171 (278)
                      .+|+=+|||.  ++..+    .+.+. +++.+|.++..++.+++       .+...+.+|..+...     -++.|++++
T Consensus       401 ~~vII~G~Gr--~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~-------~g~~v~~GDat~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        401 PRVIIAGFGR--FGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK-------FGMKVFYGDATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             CcEEEEecCh--HHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh-------cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence            5788887765  44444    34454 79999999999998875       245789999988641     246777664


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .-         ++.+..... ....+.+.|+-.++....+.
T Consensus       471 ~~---------~d~~~n~~i-~~~ar~~~p~~~iiaRa~d~  501 (621)
T PRK03562        471 AI---------DDPQTSLQL-VELVKEHFPHLQIIARARDV  501 (621)
T ss_pred             Ee---------CCHHHHHHH-HHHHHHhCCCCeEEEEECCH
Confidence            21         111122222 23344456776666654443

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=83.96  E-value=5  Score=35.33  Aligned_cols=98  Identities=21%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEcc--ccC-C--ccCCCcc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDD--VLD-T--KLERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d--~~~-~--~~~~~fD  167 (278)
                      ...++.+||-+|+|. |..+..+++. |..+|+++|.++.-.+.+++    .|...+ .....+  ..+ .  ...+.+|
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d  256 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVD  256 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCC
Confidence            456788999887632 1233334444 65579999999988887754    232211 111100  000 0  0124588


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  210 (278)
                      +++..-.-             ...+..+.+.|+++ |.+++...
T Consensus       257 ~vid~~g~-------------~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         257 YSFECTGN-------------ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             EEEECCCC-------------hHHHHHHHHhcccCCCEEEEEcC
Confidence            88753110             11236677888885 99887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK09291 short chain dehydrogenase; Provisional

Probab=83.74  E-value=8.8  Score=31.56  Aligned_cols=73  Identities=16%  Similarity=0.276  Sum_probs=47.7

Q ss_pred             CeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEEeC
Q 023703          101 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDK  172 (278)
Q Consensus       101 ~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~~~  172 (278)
                      ++||-.|++.|   .++..+++.|+ +|++++.++...+..+......+ .++.++.+|+.+..     ...+.|+++.+
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG-LALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            47888887554   23334455675 79999988776666555544444 25788889987742     13478998877


Q ss_pred             Ccc
Q 023703          173 GTL  175 (278)
Q Consensus       173 ~~~  175 (278)
                      ..+
T Consensus        81 ag~   83 (257)
T PRK09291         81 AGI   83 (257)
T ss_pred             CCc
Confidence            543

>PRK07677 short chain dehydrogenase; Provisional

Probab=83.62  E-value=6.7  Score=32.31  Aligned_cols=72  Identities=10%  Similarity=0.126  Sum_probs=48.9

Q ss_pred             CeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCCc
Q 023703          101 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF  166 (278)
Q Consensus       101 ~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~f  166 (278)
                      +++|-.|++.|   .++..+++.|. +|++++.++...+.+.+.+...+ .++.++.+|+.+...           -++.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            57888888665   34455666676 89999998877766665554433 357888999876421           1467


Q ss_pred             cEEEeCCc
Q 023703          167 QLVMDKGT  174 (278)
Q Consensus       167 D~v~~~~~  174 (278)
                      |+++.+..
T Consensus        80 d~lI~~ag   87 (252)
T PRK07677         80 DALINNAA   87 (252)
T ss_pred             cEEEECCC
Confidence            99887643

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=83.54  E-value=14  Score=36.00  Aligned_cols=109  Identities=16%  Similarity=0.185  Sum_probs=71.4

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------C-C---------cceEEEEccccCCc
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDTK  161 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~-~---------~~~~~~~~d~~~~~  161 (278)
                      .+|.-||+|+=  .++..++..|+ +|+.+|.+++.++.+..++...       + +         .++++. .|...  
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--  389 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG--  389 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence            57999999984  45556777787 8999999999998877664321       1 0         112211 22211  


Q ss_pred             cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                       -...|+|+..     +   +++.+-...++.++-++++|+.++...+.+-+..++...+.
T Consensus       390 -~~~aDlViEa-----v---~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~  441 (715)
T PRK11730        390 -FERVDVVVEA-----V---VENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALK  441 (715)
T ss_pred             -hcCCCEEEec-----c---cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcC
Confidence             1346777753     2   23344556788999999999988877777777777766543

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=83.54  E-value=8.9  Score=32.20  Aligned_cols=63  Identities=17%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC------CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~  161 (278)
                      .++..++|+|||.|.++..++..-      ...++.||-...-. .+-........ ..+.=+..|+.++.
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD   86 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence            456689999999999999988752      24789999855322 22222222210 12444556665543

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=83.53  E-value=1.3  Score=36.85  Aligned_cols=44  Identities=18%  Similarity=0.252  Sum_probs=32.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  143 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~  143 (278)
                      +..+++|+.||+|.++..+...+ .+|+.-|+++..+...+..++
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCEEEEEecchhHHHHHhcccc-cceeeeechHHHHHHHHHHHh
Confidence            56799999999999999987764 489999999998887774444

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=83.46  E-value=3.7  Score=36.25  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhh-------hCCC--cceEEEEccccCCcc---
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVDDVLDTKL---  162 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~-------~~~~--~~~~~~~~d~~~~~~---  162 (278)
                      +..++....|+|+|.|.....++.. ++..-+|+++....-+.+..+.+       ..|-  ..+..++++..+...   
T Consensus       189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e  268 (419)
T KOG3924|consen  189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE  268 (419)
T ss_pred             ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence            3467789999999999998888877 55678888887665555543322       2222  237888888877542   


Q ss_pred             -CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          163 -ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                       ....++|+.+.+.    +++   ..... +.++..-+++|-+++-..+-.+
T Consensus       269 I~~eatvi~vNN~~----Fdp---~L~lr-~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  269 IQTEATVIFVNNVA----FDP---ELKLR-SKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             HhhcceEEEEeccc----CCH---HHHHh-hHHHHhhCCCcceEeccccccc
Confidence             3556788877543    122   12222 2577888899999888765444

>PRK07102 short chain dehydrogenase; Provisional

Probab=83.41  E-value=6.5  Score=32.13  Aligned_cols=72  Identities=15%  Similarity=0.068  Sum_probs=46.0

Q ss_pred             CeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--------CCCccEE
Q 023703          101 WSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------ERQFQLV  169 (278)
Q Consensus       101 ~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~fD~v  169 (278)
                      ++|+-.|+..|   .++..+++.|+ +|++++.++...+...+.....+-.++.++.+|+.+...        ...+|++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            36887885543   23444555675 799999998766554444433322468899999987531        2357888


Q ss_pred             EeCC
Q 023703          170 MDKG  173 (278)
Q Consensus       170 ~~~~  173 (278)
                      +.+.
T Consensus        81 v~~a   84 (243)
T PRK07102         81 LIAV   84 (243)
T ss_pred             EECC
Confidence            8654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.30  E-value=15  Score=33.29  Aligned_cols=64  Identities=16%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             CCeEEEEecCCCHHHHHHhhC----CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEE
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~----~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      ..+|+=+|+  |.++..+++.    |. .|+.+|.++..++.+++..     .++.++.+|..+...     -..+|.++
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~vi  302 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAFI  302 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence            456777766  6666665553    54 7999999999888777642     246788999876531     24677777


Q ss_pred             e
Q 023703          171 D  171 (278)
Q Consensus       171 ~  171 (278)
                      +
T Consensus       303 ~  303 (453)
T PRK09496        303 A  303 (453)
T ss_pred             E
Confidence            5

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=83.23  E-value=4.4  Score=35.29  Aligned_cols=98  Identities=22%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccE
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQL  168 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~  168 (278)
                      ...++.+||-.|+|. |..+..+++. |...|++++.++...+.+++.    |.+. +.....+..+    ......+|+
T Consensus       169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~  244 (351)
T cd08233         169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDV  244 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence            446778888887531 2333344444 654799999998888877542    3221 1111111111    111234888


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++.....             ...++.+.+.|+++|.++....
T Consensus       245 vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         245 SFDCAGV-------------QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             EEECCCC-------------HHHHHHHHHhccCCCEEEEEcc
Confidence            8864211             1123678889999999887654

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=83.09  E-value=5.5  Score=30.26  Aligned_cols=73  Identities=18%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             eEEEEecCCC---HHHHHHhhCCCCcEEEEeCC--hHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCCC
Q 023703          102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LERQ  165 (278)
Q Consensus       102 ~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s--~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  165 (278)
                      ++|=.|+++|   .++..++++|...|+.+..+  ....+.....++..+ .++.+..+|+.+..           ..++
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            5777787766   45566667766688999988  555665555565555 57999999988752           1367


Q ss_pred             ccEEEeCCcc
Q 023703          166 FQLVMDKGTL  175 (278)
Q Consensus       166 fD~v~~~~~~  175 (278)
                      .|+++.+...
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999876543

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07035 short chain dehydrogenase; Provisional

Probab=83.06  E-value=7.6  Score=31.91  Aligned_cols=74  Identities=12%  Similarity=0.158  Sum_probs=51.0

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|+++|   .++..+++.|+ +|+.++.++..++...+.+...+ .++.++..|+.+...           -+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4568888888766   34555666776 89999999877776666555443 256778888876421           14


Q ss_pred             CccEEEeCCc
Q 023703          165 QFQLVMDKGT  174 (278)
Q Consensus       165 ~fD~v~~~~~  174 (278)
                      +.|+++.+..
T Consensus        85 ~id~li~~ag   94 (252)
T PRK07035         85 RLDILVNNAA   94 (252)
T ss_pred             CCCEEEECCC
Confidence            6899887654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=83.06  E-value=7.1  Score=33.17  Aligned_cols=106  Identities=18%  Similarity=0.185  Sum_probs=60.9

Q ss_pred             CeEEEEecCC--CHHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703          101 WSVLDIGTGN--GLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus       101 ~~vLDiGcG~--G~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .+|+=+|.|-  |.++..+...|.. .+++.|.+...++.+.+    .++   .....+..........|+|+..-++. 
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~~~~~~aD~VivavPi~-   75 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLAEAAAEADLVIVAVPIE-   75 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhhhhcccCCEEEEeccHH-
Confidence            3677777653  3555566666653 58999999888877764    222   11111110011223468888654432 


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                               ....+++++...|++|..+  ++.........+.+..+.
T Consensus        76 ---------~~~~~l~~l~~~l~~g~iv--~Dv~S~K~~v~~a~~~~~  112 (279)
T COG0287          76 ---------ATEEVLKELAPHLKKGAIV--TDVGSVKSSVVEAMEKYL  112 (279)
T ss_pred             ---------HHHHHHHHhcccCCCCCEE--EecccccHHHHHHHHHhc
Confidence                     5566778888888998743  444444555555555544

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=82.98  E-value=8.9  Score=32.93  Aligned_cols=88  Identities=17%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .+|.=||+|.-  .++..+...|. .+|+++|.++..++.+++    .+.. .. ...+..+  .-...|+|+..-+.. 
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~-~~-~~~~~~~--~~~~aDvViiavp~~-   77 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG-DR-VTTSAAE--AVKGADLVILCVPVG-   77 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC-ce-ecCCHHH--HhcCCCEEEECCCHH-
Confidence            47889998862  34445555553 379999999988776653    2321 11 1112111  113468887643321 


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEE
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLV  206 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  206 (278)
                               ....+++.+...+++|+.++
T Consensus        78 ---------~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         78 ---------ASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             ---------HHHHHHHHHHhhCCCCCEEE
Confidence                     23345567777888887554

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=82.95  E-value=18  Score=31.01  Aligned_cols=74  Identities=18%  Similarity=0.237  Sum_probs=43.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc----CCCccEE
Q 023703           99 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL----ERQFQLV  169 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~----~~~fD~v  169 (278)
                      .+++||-.| |+|.++..++.    .|+ +|+++..++...+.........+. .++.++.+|+.+...    -...|+|
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            356888887 45665555544    465 787777665543333222211121 357889999987531    1357888


Q ss_pred             EeCCc
Q 023703          170 MDKGT  174 (278)
Q Consensus       170 ~~~~~  174 (278)
                      +....
T Consensus        82 ih~A~   86 (325)
T PLN02989         82 FHTAS   86 (325)
T ss_pred             EEeCC
Confidence            86654

>PRK07063 short chain dehydrogenase; Provisional

Probab=82.54  E-value=8.3  Score=31.88  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=51.6

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh--CCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR--DGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~--~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .++++|-.|++.|   .++..++++|+ +|+.++.++..++...+.+..  .+ .++.++.+|+.+...           
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAG-ARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4678998888665   34555666776 799999998877776666544  22 357888999977521           


Q ss_pred             CCCccEEEeCCc
Q 023703          163 ERQFQLVMDKGT  174 (278)
Q Consensus       163 ~~~fD~v~~~~~  174 (278)
                      .++.|.++.+..
T Consensus        84 ~g~id~li~~ag   95 (260)
T PRK07063         84 FGPLDVLVNNAG   95 (260)
T ss_pred             hCCCcEEEECCC
Confidence            146898887654

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=82.52  E-value=6.8  Score=33.96  Aligned_cols=97  Identities=22%  Similarity=0.276  Sum_probs=53.5

Q ss_pred             cCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccC----CccCCCccEE
Q 023703           97 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD----TKLERQFQLV  169 (278)
Q Consensus        97 ~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~----~~~~~~fD~v  169 (278)
                      ..++.+||-.|+| .|..+..+++. |...|++++-++...+.+++.    +... +.....+..+    ......+|++
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v  234 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF  234 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence            4567788776653 23344445554 643488898888777766542    3211 1111112111    1123468888


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +....-             ...+..+.+.|+++|+++....
T Consensus       235 ld~~g~-------------~~~~~~~~~~l~~~g~~v~~g~  262 (340)
T TIGR00692       235 LEMSGA-------------PKALEQGLQAVTPGGRVSLLGL  262 (340)
T ss_pred             EECCCC-------------HHHHHHHHHhhcCCCEEEEEcc
Confidence            864110             1123678888999999887653

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK06500 short chain dehydrogenase; Provisional

Probab=82.32  E-value=25  Score=28.57  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=45.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..+++.|+ +|++++.++..++...+..   + .++.++.+|+.+...           .+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---G-ESALVIRADAGDVAAQKALAQALAEAFG   79 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---C-CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4567888887654   34445566676 7999998876655444332   2 256778888876421           24


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        80 ~id~vi~~ag~   90 (249)
T PRK06500         80 RLDAVFINAGV   90 (249)
T ss_pred             CCCEEEECCCC
Confidence            68988876543

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=82.18  E-value=3.3  Score=36.40  Aligned_cols=97  Identities=20%  Similarity=0.189  Sum_probs=56.1

Q ss_pred             cccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc---ccc----CCccCCC
Q 023703           95 DKYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVL----DTKLERQ  165 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~---d~~----~~~~~~~  165 (278)
                      ....++.+||-.|+| .|..+..+++. |...|++++.++...+.+++    .+..  .++..   +..    .......
T Consensus       178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~--~vv~~~~~~~~~~l~~~~~~~~  251 (363)
T cd08279         178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT--HTVNASEDDAVEAVRDLTDGRG  251 (363)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe--EEeCCCCccHHHHHHHHcCCCC
Confidence            344677888888764 24444555555 65459999988887776643    2321  11111   110    1111345


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+++....-             ...+..+.+.|+++|+++....
T Consensus       252 vd~vld~~~~-------------~~~~~~~~~~l~~~G~~v~~g~  283 (363)
T cd08279         252 ADYAFEAVGR-------------AATIRQALAMTRKGGTAVVVGM  283 (363)
T ss_pred             CCEEEEcCCC-------------hHHHHHHHHHhhcCCeEEEEec
Confidence            8888753210             1223678888999999987643

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK12744 short chain dehydrogenase; Provisional

Probab=82.15  E-value=27  Score=28.75  Aligned_cols=108  Identities=11%  Similarity=0.125  Sum_probs=57.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC----hHHHHHHHHHhhhCCCcceEEEEccccCCcc---------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS----EDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s----~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---------  162 (278)
                      .++++|-.|++.|   .++..+++.|+ +++.++.+    ....+...+.+...+ .++.++..|+.+...         
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAG-AKAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhC-CcEEEEecCcCCHHHHHHHHHHHH
Confidence            4568998887555   33444555576 56666533    233333333333333 257888999986421         


Q ss_pred             --CCCccEEEeCCcccee-ccCCCCh-----------hhHHHHHHHHHhcccCCcEEEEE
Q 023703          163 --ERQFQLVMDKGTLDAI-GLHPDGP-----------LKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       163 --~~~fD~v~~~~~~~~~-~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                        .++.|+++.+...... .+.....           .....+++.+.+.++++|.+++.
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~  144 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL  144 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence              1468998877643211 0111111           11123456666777777776543

>PLN02702 L-idonate 5-dehydrogenase

Probab=82.11  E-value=9.7  Score=33.39  Aligned_cols=97  Identities=18%  Similarity=0.220  Sum_probs=54.7

Q ss_pred             ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEE---ccccC----C--ccCC
Q 023703           96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---DDVLD----T--KLER  164 (278)
Q Consensus        96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~---~d~~~----~--~~~~  164 (278)
                      +..++.+||-+|+| .|..+..+++. |...++++|.++...+.+++    .+.+.+....   .+..+    .  ...+
T Consensus       178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (364)
T PLN02702        178 NIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKAMGG  253 (364)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhhcCC
Confidence            44567788888753 23344445554 66568999998877776654    2322221111   11111    0  1124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+|+++....            . ...+..+.+.|+++|+++...
T Consensus       254 ~~d~vid~~g------------~-~~~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        254 GIDVSFDCVG------------F-NKTMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             CCCEEEECCC------------C-HHHHHHHHHHHhcCCEEEEEc
Confidence            5788875311            0 112377888999999988764

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=82.10  E-value=19  Score=35.05  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=70.4

Q ss_pred             CeEEEEecCCC--HHHHHHh-hCCCCcEEEEeCChHHHHHHHHHhhhC-------C-C---------cceEEEEccccCC
Q 023703          101 WSVLDIGTGNG--LLLQELS-KQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDT  160 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~-~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~-~---------~~~~~~~~d~~~~  160 (278)
                      .+|.-||+|+=  .++..++ ..|. .|+..|.+++.++.+..++...       + +         .++++. .|..  
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~--  385 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR--  385 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH--
Confidence            57999999983  4555566 5576 8999999999998886655321       1 0         112221 1211  


Q ss_pred             ccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          161 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       161 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                       .-...|+|+..     +   +++..-...+++++-++++|+.+|...+..-+..++...+
T Consensus       386 -~~~~aDlViEa-----v---~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~  437 (708)
T PRK11154        386 -GFKHADVVIEA-----V---FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAA  437 (708)
T ss_pred             -HhccCCEEeec-----c---cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhc
Confidence             11346777753     2   2333455678899999999999888777777777766654

>PRK05876 short chain dehydrogenase; Provisional

Probab=82.07  E-value=8.5  Score=32.36  Aligned_cols=75  Identities=13%  Similarity=0.148  Sum_probs=51.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|+++|   .++..|++.|+ +|+.+|.++..++...+.+...+ .++.++.+|+.+...           .+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG-FDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4568888887665   34555666676 79999999877776655554444 257788999977421           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus        83 ~id~li~nAg~   93 (275)
T PRK05876         83 HVDVVFSNAGI   93 (275)
T ss_pred             CCCEEEECCCc
Confidence            67999887654

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=81.94  E-value=6.8  Score=34.52  Aligned_cols=98  Identities=19%  Similarity=0.215  Sum_probs=55.5

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEc--cccCC---ccCCCcc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVD--DVLDT---KLERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~--d~~~~---~~~~~fD  167 (278)
                      ...++.+||-+|+|. |..+..+++. |..+|+++|.++.-.+.+++    .|... +.....  +..+.   ...+.+|
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d  258 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGVD  258 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCCc
Confidence            456788999998632 2333344444 65479999999998887754    33322 111111  11110   0123688


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  210 (278)
                      +|+..-.            . ...+..+.+.|+++ |+++....
T Consensus       259 ~vid~~g------------~-~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         259 YTFECIG------------N-VKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             EEEECCC------------C-hHHHHHHHHhhccCCCeEEEEcc
Confidence            8875311            0 11336778889887 98887653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK08862 short chain dehydrogenase; Provisional

Probab=81.79  E-value=8  Score=31.52  Aligned_cols=73  Identities=10%  Similarity=0.007  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|-.|++.|   .++..+++.|+ +|+.++.++..++...+.....+ ..+.....|+.+...           -+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT-DNVYSFQLKDFSQESIRHLFDAIEQQFN   81 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4678999999887   35666777786 79999999988877766665544 246667778766420           14


Q ss_pred             -CccEEEeCC
Q 023703          165 -QFQLVMDKG  173 (278)
Q Consensus       165 -~fD~v~~~~  173 (278)
                       ..|+++.+.
T Consensus        82 ~~iD~li~na   91 (227)
T PRK08862         82 RAPDVLVNNW   91 (227)
T ss_pred             CCCCEEEECC
Confidence             789988875

>PRK06125 short chain dehydrogenase; Provisional

Probab=81.56  E-value=9.4  Score=31.54  Aligned_cols=75  Identities=13%  Similarity=0.132  Sum_probs=49.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCCCccE
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQFQL  168 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~fD~  168 (278)
                      .++++|-.|++.|   .++..+++.|+ +|++++.++...+.+...+....-.++.++..|+.+..       .-++.|+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            4678898897655   23444566676 89999999887766655554332135778888987642       1256888


Q ss_pred             EEeCCc
Q 023703          169 VMDKGT  174 (278)
Q Consensus       169 v~~~~~  174 (278)
                      ++.+..
T Consensus        85 lv~~ag   90 (259)
T PRK06125         85 LVNNAG   90 (259)
T ss_pred             EEECCC
Confidence            887654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=81.43  E-value=9.1  Score=31.78  Aligned_cols=75  Identities=15%  Similarity=0.140  Sum_probs=53.0

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..++.+|+ +|+.++.++..++.+...+...+ .++.++.+|+.+...           -+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG-IEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4668999998776   34556677776 79999999887777766665544 257888999986421           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        87 ~id~li~~ag~   97 (265)
T PRK07097         87 VIDILVNNAGI   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.38  E-value=5.9  Score=31.47  Aligned_cols=69  Identities=19%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             CCCCeEEEEecC-CCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTG-NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.||-+|.- +|.+...+... ..+|+.+|+.|.+-....        .+++|...-   ..+.+.+|+|+..-.+.
T Consensus        43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp--------~~v~Fr~~~---~~~~G~~DlivDlTGlG  110 (254)
T COG4017          43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLP--------NNVKFRNLL---KFIRGEVDLIVDLTGLG  110 (254)
T ss_pred             cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCC--------CCccHhhhc---CCCCCceeEEEeccccC
Confidence            356789999985 67777777766 358999999998654432        246665551   23467899999765544


Q ss_pred             ee
Q 023703          177 AI  178 (278)
Q Consensus       177 ~~  178 (278)
                      .+
T Consensus       111 G~  112 (254)
T COG4017         111 GI  112 (254)
T ss_pred             CC
Confidence            33

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.35  E-value=13  Score=32.02  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=29.9

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHH
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSL  141 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~  141 (278)
                      .+|.=||+|.-  .++..++..|+ +|+++|.++..++.+++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~   46 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV   46 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence            36888888853  34455666675 799999999998888764

>PRK07791 short chain dehydrogenase; Provisional

Probab=81.35  E-value=13  Score=31.52  Aligned_cols=75  Identities=15%  Similarity=0.132  Sum_probs=48.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh---------HHHHHHHHHhhhCCCcceEEEEccccCCc-----
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE---------DAINLAQSLANRDGFSCIKFLVDDVLDTK-----  161 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~---------~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----  161 (278)
                      +++++|-.|++.|   .++..+++.|+ +|+.++.+.         ..++.+.+.+...+ .++.++.+|+.+..     
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG-GEAVANGDDIADWDGAANL   82 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcC-CceEEEeCCCCCHHHHHHH
Confidence            5678999998776   34455666776 788888764         44444444443333 25777888988742     


Q ss_pred             ------cCCCccEEEeCCcc
Q 023703          162 ------LERQFQLVMDKGTL  175 (278)
Q Consensus       162 ------~~~~fD~v~~~~~~  175 (278)
                            ..++.|+++.+..+
T Consensus        83 ~~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCC
Confidence                  12578998887654

>PRK05854 short chain dehydrogenase; Provisional

Probab=81.12  E-value=13  Score=31.87  Aligned_cols=76  Identities=13%  Similarity=0.095  Sum_probs=51.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-CCcceEEEEccccCCc-----------cC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~~-----------~~  163 (278)
                      .++++|-.|+++|   .++..|++.|+ +|+.+..++...+.+.+.+... +-.++.++.+|+.+..           ..
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            4678888888766   34555666775 8999998877666555544332 1125788899998752           12


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        92 ~~iD~li~nAG~  103 (313)
T PRK05854         92 RPIHLLINNAGV  103 (313)
T ss_pred             CCccEEEECCcc
Confidence            568999987644

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=81.01  E-value=24  Score=28.25  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=25.1

Q ss_pred             CCCeEEEEecCC-C-HHHHHHhhCCCCcEEEEeCC
Q 023703           99 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS  131 (278)
Q Consensus        99 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~~D~s  131 (278)
                      ...+|+-+|||. | ..+..++..|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            456899999984 2 35556777787789999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06484 short chain dehydrogenase; Validated

Probab=80.97  E-value=27  Score=32.29  Aligned_cols=107  Identities=13%  Similarity=0.156  Sum_probs=64.0

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      ..++.+|-.|++.|   .++..++++|+ +|+.++.++..++...+..   + ..+..+..|+.+...           -
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~  341 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEAL---G-DEHLSVQADITDEAAVESAFAQIQARW  341 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceeEEEccCCCHHHHHHHHHHHHHHc
Confidence            35678888888766   34555666776 8999999887776655433   2 245667888876521           2


Q ss_pred             CCccEEEeCCccce-e-ccCCCChhh-----------HHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDA-I-GLHPDGPLK-----------RIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~-~-~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.|+++.+..... . .+.......           ...+.+.+...++.+|.+++.+
T Consensus       342 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is  400 (520)
T PRK06484        342 GRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG  400 (520)
T ss_pred             CCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence            56899987754321 1 111111111           1233455666667778877654

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=80.90  E-value=3.9  Score=35.63  Aligned_cols=93  Identities=24%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             CCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC------ccCCCccEE
Q 023703           98 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT------KLERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~------~~~~~fD~v  169 (278)
                      .++.+||-.|+|. |..+..+++. |..+|+.++.++...+.+++    .|..  .++..+-...      ...+.+|++
T Consensus       174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~v  247 (350)
T cd08240         174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD--VVVNGSDPDAAKRIIKAAGGGVDAV  247 (350)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc--EEecCCCccHHHHHHHHhCCCCcEE
Confidence            4677888886532 2333344444 66579999988887777744    2321  1111111110      012267888


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.....             ...+..+.+.|+++|.++...
T Consensus       248 id~~g~-------------~~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         248 IDFVNN-------------SATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             EECCCC-------------HHHHHHHHHHhhcCCeEEEEC
Confidence            753211             112377889999999988754

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK07814 short chain dehydrogenase; Provisional

Probab=80.89  E-value=10  Score=31.45  Aligned_cols=74  Identities=12%  Similarity=0.202  Sum_probs=49.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|-.|++.|   .++..++.+|+ +|++++.++..++...+.....+ .++.++.+|+.+...           -+
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFG   86 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4678888886544   23444555676 89999999877766655554333 357888899887531           14


Q ss_pred             CccEEEeCCc
Q 023703          165 QFQLVMDKGT  174 (278)
Q Consensus       165 ~fD~v~~~~~  174 (278)
                      ++|+++.+..
T Consensus        87 ~id~vi~~Ag   96 (263)
T PRK07814         87 RLDIVVNNVG   96 (263)
T ss_pred             CCCEEEECCC
Confidence            6898887643

>PRK07478 short chain dehydrogenase; Provisional

Probab=80.83  E-value=11  Score=31.09  Aligned_cols=75  Identities=11%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|-.|++.|   .++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           .+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRDEAYAKALVALAVERFG   82 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            4568888887665   34555666776 79999999887776666555444 357788899877421           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        83 ~id~li~~ag~   93 (254)
T PRK07478         83 GLDIAFNNAGT   93 (254)
T ss_pred             CCCEEEECCCC
Confidence            68988877643

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=80.72  E-value=7.8  Score=35.10  Aligned_cols=110  Identities=15%  Similarity=0.041  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCCCHHHHHH--hhCC-CCcEEEEeCChHHHHHHHHHhhhC-CCcceEEEEccccCC--c--cCCCccEEE
Q 023703           99 SSWSVLDIGTGNGLLLQEL--SKQG-FSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDT--K--LERQFQLVM  170 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l--~~~~-~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~--~--~~~~fD~v~  170 (278)
                      .+..+.|+|.|.|.-.-.+  ...+ ...++.||.|..+......+.... ....+.....-....  +  ....||+|+
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi  279 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI  279 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence            3457888888877443333  3333 458999999999999988877641 111111111011111  1  235699999


Q ss_pred             eCCccceeccCCCChhhHHHHH-HHHHhcccCCcEEEEEecCC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYW-DSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +...+..+.-..    .+.... ...++..++|+.+++.....
T Consensus       280 ~ah~l~~~~s~~----~R~~v~~s~~r~~~r~g~~lViIe~g~  318 (491)
T KOG2539|consen  280 CAHKLHELGSKF----SRLDVPESLWRKTDRSGYFLVIIEKGT  318 (491)
T ss_pred             eeeeeeccCCch----hhhhhhHHHHHhccCCCceEEEEecCC
Confidence            977665543111    222222 45667889999998886544

>PRK12747 short chain dehydrogenase; Provisional

Probab=80.57  E-value=30  Score=28.31  Aligned_cols=109  Identities=7%  Similarity=0.056  Sum_probs=58.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEe-CChHHHHHHHHHhhhCCCcceEEEEccccCCcc------------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVD-YSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D-~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------------  162 (278)
                      .++++|-.|++.|   .++..+++.|+ +|+.++ .++...+.........+ ..+.....|+.+...            
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESLHGVEALYSSLDNEL   80 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcC-CceEEEecccCCHHHHHHHHHHHHHHh
Confidence            3568888887766   34555666675 677764 44454444433333333 245667778765310            


Q ss_pred             -----CCCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 -----ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 -----~~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                           ..+.|+++.+..+.... +.....+..           ..+++.+.+.++.+|.++..+
T Consensus        81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~is  144 (252)
T PRK12747         81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS  144 (252)
T ss_pred             hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEEC
Confidence                 02689998776542111 111111111           233455666777778777653

>PRK05693 short chain dehydrogenase; Provisional

Probab=80.54  E-value=25  Score=29.33  Aligned_cols=66  Identities=14%  Similarity=0.233  Sum_probs=41.5

Q ss_pred             eEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CCCcc
Q 023703          102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ  167 (278)
Q Consensus       102 ~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~fD  167 (278)
                      ++|-.|+++|   .++..++..|+ +|++++.++..++....    .   ++.++.+|+.+...           .++.|
T Consensus         3 ~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~----~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   74 (274)
T PRK05693          3 VVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA----A---GFTAVQLDVNDGAALARLAEELEAEHGGLD   74 (274)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            6777776544   23344555575 89999998876554432    1   35677788876321           24689


Q ss_pred             EEEeCCcc
Q 023703          168 LVMDKGTL  175 (278)
Q Consensus       168 ~v~~~~~~  175 (278)
                      +++.+...
T Consensus        75 ~vi~~ag~   82 (274)
T PRK05693         75 VLINNAGY   82 (274)
T ss_pred             EEEECCCC
Confidence            99887654

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=80.50  E-value=35  Score=29.09  Aligned_cols=116  Identities=14%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             CCCeEEEEecCCCH---HHHHHhhCCCCcEEEEeCChH---HHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccE
Q 023703           99 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSED---AINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQL  168 (278)
Q Consensus        99 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~~~D~s~~---~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~  168 (278)
                      +++++|-+|+| |.   .+..++..|+++|+.++.++.   ..+...+.+...+ ..+.+...|+.+..    .-..+|+
T Consensus       125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV-PECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC-CCceeEEechhhhhHHHhhhccCCE
Confidence            46789999997 52   222345568767999999863   2222222222221 13344455554321    1135799


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      ++.+-+...-......+..       -...|.++..++=..+++....++...+.
T Consensus       203 lINaTp~Gm~~~~~~~~~~-------~~~~l~~~~~v~D~vY~P~~T~ll~~A~~  250 (289)
T PRK12548        203 LVNATLVGMKPNDGETNIK-------DTSVFRKDLVVADTVYNPKKTKLLEDAEA  250 (289)
T ss_pred             EEEeCCCCCCCCCCCCCCC-------cHHhcCCCCEEEEecCCCCCCHHHHHHHH
Confidence            9876554321100000100       01345666544333455555556665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	6e-27
3lcc_A	235	Putative methyl chloride transferase; halide methy	3e-15
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-13
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	9e-13
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-12
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-12
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-12
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	6e-12
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-11
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-11
2p7i_A	250	Hypothetical protein; putative methyltransferase,	2e-11
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-11
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	6e-11
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	7e-11
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	7e-11
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-10
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	4e-10
3cc8_A	230	Putative methyltransferase; structural genomics, j	5e-10
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	8e-10
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	9e-10
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-09
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	1e-09
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-09
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	3e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-09
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	1e-08
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-08
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	3e-08
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	3e-08
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-08
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-08
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	4e-08
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	1e-07
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	2e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	3e-07
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	6e-07
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	6e-07
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	7e-07
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	7e-07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-06
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-06
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	2e-06
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	3e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	4e-06
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	5e-06
1xxl_A	239	YCGJ protein; structural genomics, protein structu	6e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	7e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	8e-06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	9e-06
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	9e-06
2b3t_A	276	Protein methyltransferase HEMK; translation termin	1e-05
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	2e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-05
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	3e-05
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	4e-05
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	4e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	5e-05
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	5e-05
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	5e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	5e-05
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	6e-05
3i9f_A	170	Putative type 11 methyltransferase; structural gen	6e-05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	7e-05
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	8e-05
3ege_A	261	Putative methyltransferase from antibiotic biosyn	8e-05
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	9e-05
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	1e-04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	1e-04
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	1e-04
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	1e-04
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	2e-04
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	2e-04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	2e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	4e-04
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	5e-04
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	5e-04

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score =  103 bits (258), Expect = 6e-27
 Identities = 48/221 (21%), Positives = 70/221 (31%), Gaps = 49/221 (22%)

Query: 24  ASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHV 83
            S      YWD  Y            A   WFG                        +  
Sbjct: 1   GSGYREVEYWDQRYQ------GAADSAPYDWFGDF----------------------SSF 32

Query: 84  EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 143
             L    +   D+      +L +G GN  L  EL   GF ++T VDYS   +   Q  A 
Sbjct: 33  RALLEPELRPEDR------ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQ--AC 84

Query: 144 RDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDGPLKRIM--------YWDS 194
                 +++   DV         F +V++KGTLDA+      P                 
Sbjct: 85  YAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSE 144

Query: 195 VSKLVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEH 235
           VS+++ PGG  +  +  +      H     +Q   G S  H
Sbjct: 145 VSRVLVPGGRFISMTSAAPHFRTRH----YAQAYYGWSLRH 181

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 72.4 bits (177), Expect = 3e-15
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT 160
             L  G G G  +  ++      + G+D SE A+  A         +    F+ +DV   
Sbjct: 69  RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW 127

Query: 161 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
           +    F L+ D     AI      P  R  +  S+ +L+ P G L+ 
Sbjct: 128 RPTELFDLIFDYVFFCAIE-----PEMRPAWAKSMYELLKPDGELIT 169

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 68.8 bits (168), Expect = 1e-13
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 7/164 (4%)

Query: 52  EVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNG 111
           + W   + +      T              +        V +  K +S   VLD+G G G
Sbjct: 73  QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132

Query: 112 LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD 171
                LS  G+ D+T  D++E++I        ++  + I   + D+    ++  +  ++ 
Sbjct: 133 RNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLN-ISTALYDINAANIQENYDFIVS 190

Query: 172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215
                   L+ +   +      ++ +    GG  +I +  ST D
Sbjct: 191 TVVFMF--LNRE---RVPSIIKNMKEHTNVGGYNLIVAAMSTDD 229

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
            LD+G GNG     L+  G+ D+   D +  +I   + + + +    +   V D+ +   
Sbjct: 36  TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 94

Query: 163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215
           +RQ+  ++    L    +  +          ++ +   PGG  +I +   T D
Sbjct: 95  DRQYDFILSTVVL----MFLEAKT-IPGLIANMQRCTKPGGYNLIVAAMDTAD 142

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            VLD+  G G+   EL+++G+ ++ G+D  E+ + +A+  A       I+FL  DVL+  
Sbjct: 44  RVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLK-IEFLQGDVLEIA 101

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
            + +F  V        I    +  L+++     V++ + PGG+ + 
Sbjct: 102 FKNEFDAVTM--FFSTIMYFDEEDLRKLF--SKVAEALKPGGVFIT 143

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
             LD+  G G L + L  +   +   VD S++ ++ A++     G    +    D+ +  
Sbjct: 40  DYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLK-PRLACQDISNLN 97

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
           + R+F L+     LD+   +         Y+ +VS  +  GG+ + 
Sbjct: 98  INRKFDLIT--CCLDSTN-YIIDSDDLKKYFKAVSNHLKEGGVFIF 140

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
           + L+IG   G   ++L+      LT +D    AI  A        +S I +   D+L   
Sbjct: 54  NGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRAC--QRTKRWSHISWAATDILQFS 110

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213
               F L+     +  +  + +   +     D++ K++APGG LV  S    
Sbjct: 111 TAELFDLI----VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 63.1 bits (153), Expect = 6e-12
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            ++D   GNG   + LS+     + G+D S+ A+ +A           I + + D L  +
Sbjct: 59  PLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAAN---ISYRLLDGLVPE 114

Query: 162 LERQFQL-VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
              Q    + D       G H     KR +   S+  L+   G + +    +   +  + 
Sbjct: 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNS 174

Query: 221 V 221
           +
Sbjct: 175 L 175

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC---IKFLVDDVL 158
            VL++  G G L       G+ ++T ++ S   +   +                +  D+ 
Sbjct: 85  PVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143

Query: 159 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
              L+++F  V+   +  +I    +   + +    SV + + PGG  ++
Sbjct: 144 AFALDKRFGTVVI--SSGSINELDEADRRGLY--ASVREHLEPGGKFLL 188

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 14/147 (9%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
           S+LD+  G G  L+  +K+   D  G++ SED +  A+                D+ D +
Sbjct: 43  SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPD-----ATLHQGDMRDFR 96

Query: 162 LERQFQLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
           L R+F  V+      ++G L     L   +   S ++ + PGG++V+      +      
Sbjct: 97  LGRKFSAVVS--MFSSVGYLKTTEELGAAV--ASFAEHLEPGGVVVVEPWWFPETFADGW 152

Query: 221 VSNLSQRRIGVS---QEHEIKDEEACR 244
           VS    RR G +     H +++  A R
Sbjct: 153 VSADVVRRDGRTVARVSHSVREGNATR 179

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 27/126 (21%)

Query: 96  KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 155
            +    ++L++G+  G     L +    D+T V+ SE+AI+ AQ          I ++  
Sbjct: 39  PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDG----ITYIHS 93

Query: 156 DVLDTKLERQFQLVMDKGTLDAIGL--------HPDGPLKRIMYWDSVSKLVAPGGLLVI 207
              D +L R++         D I L         P   LKRI         +A GG L +
Sbjct: 94  RFEDAQLPRRY---------DNIVLTHVLEHIDDPVALLKRIN-----DDWLAEGGRLFL 139

Query: 208 TSCNST 213
              N+ 
Sbjct: 140 VCPNAN 145

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 8/141 (5%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            + DIG G G     L+   + ++TGVD SE+ + +AQ  A       + F V D+ + +
Sbjct: 36  RIADIGCGTGTATLLLAD-HY-EVTGVDLSEEMLEIAQEKAMETNRH-VDFWVQDMRELE 92

Query: 162 LERQFQLVMDKGTLDAIGLHPDGP-LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
           L      +      D++        +K+    DS ++L+  GG L+    +  K E +  
Sbjct: 93  LPEPVDAITI--LCDSLNYLQTEADVKQTF--DSAARLLTDGGKLLFDVHSPYKMETLFN 148

Query: 221 VSNLSQRRIGVSQEHEIKDEE 241
               +      S        E
Sbjct: 149 GKTYATHAEQSSYIWFADPGE 169

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 59.5 bits (144), Expect = 6e-11
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 88  SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 147
           ++ +      +    +L +  G G     L+  G+ ++T VD S   +  A+ LA   G 
Sbjct: 18  NDFLVSVANQIPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV 76

Query: 148 SCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV 206
             I  +  ++ D  +    ++ ++       I  H    L R   +  V + + PGG+ +
Sbjct: 77  K-ITTVQSNLADFDIVADAWEGIVS------IFCHLPSSL-RQQLYPKVYQGLKPGGVFI 128

Query: 207 I 207
           +
Sbjct: 129 L 129

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            VL++ +G G   + LS      +T +D S + I  A     R G   ++F   D+ D  
Sbjct: 49  DVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAG----RHGLDNVEFRQQDLFDWT 103

Query: 162 LERQFQLVMDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
            +RQ+  V     L     H PD   +    W+SV   VAPGG++        +  L  +
Sbjct: 104 PDRQWDAVFFAHWL----AHVPDDRFEAF--WESVRSAVAPGGVVEFVDVTDHERRLEQQ 157

Query: 221 V 221
            
Sbjct: 158 D 158

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 60.3 bits (146), Expect = 7e-11
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
           S+LD+  G G+ L+ L+      + G++ S D + +A+                D+ D  
Sbjct: 53  SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPD-----AVLHHGDMRDFS 106

Query: 162 LERQFQLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
           L R+F  V       +IG L     L   +  +  +  V P G++V+      ++     
Sbjct: 107 LGRRFSAVTC--MFSSIGHLAGQAELDAAL--ERFAAHVLPDGVVVVEPWWFPENFTPGY 162

Query: 221 VSNLSQRRIG---VSQEHEIKDEEACR 244
           V+  +    G       H  ++ EA R
Sbjct: 163 VAAGTVEAGGTTVTRVSHSSREGEATR 189

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT 160
           SVLD+G G G  L +  + G  +  GVD +E +IN A+  A        + F   D    
Sbjct: 67  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 126

Query: 161 KLE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212
            ++  ++F ++    +  +            +   ++++ + PGG  ++T  + 
Sbjct: 127 HMDLGKEFDVIS---SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
           +VLD G G  L    +  +      G++ S+  +  A++ +  + F        D+    
Sbjct: 26  TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKL-NISKGDIRKLP 84

Query: 162 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 216
            +      V   GT+     H      +    D + +++ PGGL  I    +  + 
Sbjct: 85  FKDESMSFVYSYGTI----FHMRKNDVKEAI-DEIKRVLKPGGLACINFLTTKDER 135

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 29/143 (20%)

Query: 77  GHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 136
           GH  N V     + +++  K      VLDIG  +G L   + + G   ++G++   +A  
Sbjct: 15  GHYYNAVNPNLLKHIKKEWK-----EVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAE 68

Query: 137 LAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL-----H-PDGPLKRIM 190
            A+           K     + D +      +  ++   D +       H  D P     
Sbjct: 69  QAKE----------KLDHVVLGDIETM---DMPYEEEQFDCVIFGDVLEHLFD-PWA--- 111

Query: 191 YWDSVSKLVAPGGLLVITSCNST 213
             + V   +   G+++ +  N +
Sbjct: 112 VIEKVKPYIKQNGVILASIPNVS 134

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 102 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
            +LD+G G GLL   L ++   +  T VD SE  + +A++     G   +K++  D    
Sbjct: 47  DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR--GNLKVKYIEADYSKY 104

Query: 161 KLERQFQLVMDKGTLDAIGLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD--- 215
             E ++ +V     + A+ +H   D   K +        ++   G+ +       +    
Sbjct: 105 DFEEKYDMV-----VSALSIHHLEDEDKKELY--KRSYSILKESGIFINADLVHGETAFI 157

Query: 216 -ELVHEVSNLSQRRIGVSQEH 235
             L   +        G+++E 
Sbjct: 158 ENLNKTIWRQYVENSGLTEEE 178

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 22/145 (15%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
           +VL+ G G G L  +L   G   + G++ S +   +A+    ++          D L  +
Sbjct: 48  NVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKE----FSITEGDFLSFE 102

Query: 162 LERQFQLVMDKGTLDAI----GLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215
           +             D I      H   D   K +      S+L+  GG +V         
Sbjct: 103 VPTSI---------DTIVSTYAFHHLTD-DEKNVAI-AKYSQLLNKGGKIVFADTIFADQ 151

Query: 216 ELVHEVSNLSQRRIGVSQEHEIKDE 240
           +   +    +++R      ++++ E
Sbjct: 152 DAYDKTVEAAKQRGFHQLANDLQTE 176

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            VLDIG G G  L+   ++G  +  GVD +ED I           F+ +K    + L + 
Sbjct: 44  RVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFC-----EGKFNVVKSDAIEYLKSL 97

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211
            ++    VM    ++   L P+   + +         +     +VI S N
Sbjct: 98  PDKYLDGVMISHFVEH--LDPERLFELL---SLCYSKMKYSSYIVIESPN 142

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            +LD G G G +   LSKQG  D+ G D     I+ A     +  F   +++V D+   +
Sbjct: 49  KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYA-----KQDFPEARWVVGDLSVDQ 102

Query: 162 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
           + E  F L++  G +  +G   +   +  +   ++ + +   G  VI 
Sbjct: 103 ISETDFDLIVSAGNV--MGFLAEDGREPAL--ANIHRALGADGRAVIG 146

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           VLD+  G G     L   GF ++ GVD SED I  A+  A     + ++F+V D      
Sbjct: 42  VLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESN-VEFIVGDARKLSF 99

Query: 163 E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK 214
           E + F  V+    +D+I       L ++     V +++ P G  ++   +  +
Sbjct: 100 EDKTFDYVI---FIDSIVHFEPLELNQVF--KEVRRVLKPSGKFIMYFTDLRE 147

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 10/123 (8%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 161
           + DIG G G     L+      +TG+D+    I++    A + G    +  +V  + D  
Sbjct: 50  IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109

Query: 162 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
               +  L+  +G +  IG       +R +  +   K +  GG L ++ C+   DE   E
Sbjct: 110 FRNEELDLIWSEGAIYNIG------FERGL--NEWRKYLKKGGYLAVSECSWFTDERPAE 161

Query: 221 VSN 223
           +++
Sbjct: 162 IND 164

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 102 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
            V+D+G G G LL  L K   F  +TGVD S   +  A+     D    ++     +  +
Sbjct: 32  KVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91

Query: 161 KLE------RQFQLVMDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVIT 208
            L         +       T+  +  H  +  L+       + +   P  ++V T
Sbjct: 92  SLVYRDKRFSGYDAA----TVIEVIEHLDENRLQAFE--KVLFEFTRPQTVIVST 140

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 54.7 bits (131), Expect = 7e-09
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVL 158
            V  +  G    L  L         L G+DY  +A++ A  LA     +  I     D  
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180

Query: 159 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
                  + L+   G      ++     +    +    + + PGG LV 
Sbjct: 181 KLDTREGYDLLTSNGLN----IYEPDDARVTELYRRFWQALKPGGALVT 225

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 18/110 (16%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           VLD+G G G LL+ L+ +G  +  GVD     ++ A++    +      +         +
Sbjct: 56  VLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHL-ASYAQLAEAKVPV 113

Query: 163 ERQFQLVMDKGTLDAI----GLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
            + +         D I     L     ++ +    ++  L+ PGG LVI 
Sbjct: 114 GKDY---------DLICANFALLHQDIIELL---SAMRTLLVPGGALVIQ 151

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
           +VLD+G G G      ++ G   + G+D SE  +  A+          + +    + D  
Sbjct: 47  TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPV---VCYEQKAIEDIA 103

Query: 162 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
           +E   + +V+   +  A+          I     V   +   G  + +
Sbjct: 104 IEPDAYNVVL---SSLALHYIAS--FDDICK--KVYINLKSSGSFIFS 144

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 11/124 (8%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------RDGFSCIKFLVD 155
            VL I  GNG  L++      + L   D   DAI       N      +  +    ++ +
Sbjct: 51  KVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQE 110

Query: 156 DVLDTKLERQFQLVMDKGTLDAI----GLH-PDGPLKRIMYWDSVSKLVAPGGLLVITSC 210
            +         + V   G  + I     +H    P       +++S+L A GG ++IT+ 
Sbjct: 111 TIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170

Query: 211 NSTK 214
           +  K
Sbjct: 171 DGDK 174

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 161
           +LD+G+G+G +L   ++      TG+D S      A+  A   G S  + F+ +D     
Sbjct: 40  ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 99

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210
              +  +    G     G             + +++ + PGG+++I   
Sbjct: 100 ANEKCDVAACVGATWIAGGFAG-------AEELLAQSLKPGGIMLIGEP 141

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 12/107 (11%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            +L++G G G   + +   GF D+   D S +    A     R                 
Sbjct: 46  KILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRP------VRTMLFHQLD 98

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
               +  V     L  + +  D   +       + + + PGGL   +
Sbjct: 99  AIDAYDAVWAHACL--LHVPRD---ELADVLKLIWRALKPGGLFYAS 140

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 161
           + DIG G G     L+      +TG+D   D I +    A +   +  +K +   + +  
Sbjct: 50  IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109

Query: 162 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
            +  +  L+  +G +  IG   +  +          K +  GG + ++  +    E   E
Sbjct: 110 FQNEELDLIWSEGAIYNIG--FERGMNEWS------KYLKKGGFIAVSEASWFTSERPAE 161

Query: 221 VSNLSQRRIG 230
           + +       
Sbjct: 162 IEDFWMDAYP 171

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 102 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
            V+D+G G G LL+ L K   F  +TGVD S  ++ +AQ   +R      ++    ++  
Sbjct: 32  RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG 91

Query: 161 KLERQFQLVMDKGTLDAI----GLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
            L             DA      +      +   +   + +   P  ++V T
Sbjct: 92  ALT---YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 32/130 (24%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            VLD+  G G+    L ++GF  +T VD S+  +  A             F    + +  
Sbjct: 60  RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEAN 117

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDS--------------------VSKLVAP 201
                + V      DA+          I   +S                    ++ +V P
Sbjct: 118 WLTLDKDVPAGDGFDAV----------ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 167

Query: 202 GGLLVITSCN 211
           GGLLVI   N
Sbjct: 168 GGLLVIDHRN 177

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 22/152 (14%)

Query: 73  SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLL-------LQELSKQGFSDL 125
           S     M   ++      +       S   +L IG G G +       +Q        + 
Sbjct: 26  STEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINN 85

Query: 126 TGVDYSEDAINLAQSL-ANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI----GL 180
             V+ S + I   + L A       +KF       ++ + +     +    D I     L
Sbjct: 86  EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145

Query: 181 H----PDGPLKRIMYWDSVSKLVAPGGLLVIT 208
           +        LK          L+     ++I 
Sbjct: 146 YYVKDIPATLKFFH------SLLGTNAKMLII 171

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 161
            LD+G G G   + L ++    +  ++ +       +   N+ G +  I       L+  
Sbjct: 86  GLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145

Query: 162 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215
            E   +  +    + DA    PD    ++  +   ++++ P G++ IT       
Sbjct: 146 CEDNSYDFIW---SQDAFLHSPD----KLKVFQECARVLKPRGVMAITDPMKEDG 193

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 23/116 (19%)

Query: 102 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
            VL+ G G G     L+K     ++T +D S +++  A+    ++G   +KFL  ++   
Sbjct: 40  KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99

Query: 161 KLERQFQLVMDKGTLDAI----GLH----PDGPLKRIMYWDSVSKLVAPGGLLVIT 208
             E       D  + D I     L     P+  LK +       K++ PGG + + 
Sbjct: 100 PFE-------D-SSFDHIFVCFVLEHLQSPEEALKSLK------KVLKPGGTITVI 141

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 12/113 (10%)

Query: 102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 158
            ++D G G G   L+L  L  +G S  TG+D  E  +  A+ L     +   +FL  D  
Sbjct: 25  HIVDYGCGYGYLGLVLMPLLPEG-SKYTGIDSGETLLAEARELFRLLPYD-SEFLEGDAT 82

Query: 159 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211
           + +L  ++ + +    L    LH   P   +       K    GG ++    +
Sbjct: 83  EIELNDKYDIAICHAFL----LHMTTPETMLQKMIHSVK---KGGKIICFEPH 128

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            ++D+G G G   +   + G S + G+D SE  +  A++     G   I +   D+    
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG---ITYERADLDKLH 102

Query: 162 L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
           L +  F L     +  A+    D  + R+    +V + ++PGG  V +
Sbjct: 103 LPQDSFDLAY---SSLALHYVED--VARLF--RTVHQALSPGGHFVFS 143

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 26/184 (14%)

Query: 78  HMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 137
             ++   D  +E +++         V+D   GNG     L+      +   D  E A+  
Sbjct: 7   RPIHMSHDFLAEVLDDESI------VVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGK 59

Query: 138 AQSLANRDGFSCIKFLVDDV--LDTKLERQ-----FQLVMDKGTLDAIGLHPDGPLKRIM 190
                +  G    + ++D    LD  +        F L        ++   P   L+ I 
Sbjct: 60  TSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAI- 118

Query: 191 YWDSVSKLVAPGGLLVITS---CNSTKDE---LVHEVSNLSQRRIGVSQEHEIKDEEACR 244
             + +   +  GG L I      +    E   ++  V  L QR         +       
Sbjct: 119 --EKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPL---NQIN 173

Query: 245 EPPF 248
            PPF
Sbjct: 174 TPPF 177

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           VLD+G G+G    +LS+ G+    GVD SE  I   +          + F+  D+     
Sbjct: 57  VLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPD---LSFIKGDLSSLPF 112

Query: 163 E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV 221
           E  QF+ +M   +L+     P   L  I       +++   G   I     T     +  
Sbjct: 113 ENEQFEAIMAINSLEWTE-EPLRALNEIK------RVLKSDGYACIAILGPTAKPRENSY 165

Query: 222 SNL 224
             L
Sbjct: 166 PRL 168

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 48.5 bits (115), Expect = 7e-07
 Identities = 28/196 (14%), Positives = 70/196 (35%), Gaps = 22/196 (11%)

Query: 45  REHGHAGEVW---FGADVMDVVASWTKSL-----CISISQGHMLNHVEDLKSEPVEENDK 96
           + +    E+W      D+ D    W          +  +   +L  ++ +    +E +  
Sbjct: 25  KTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRN 84

Query: 97  YLSSW------SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI 150
           +++S         LD G G G + + L  + ++    ++  +  +  A+      G    
Sbjct: 85  FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--GMPVG 142

Query: 151 KFLVDDVLDTKLERQ-FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS 209
           KF++  +    L    + L++ + T   +    D    +  ++    + + P G +    
Sbjct: 143 KFILASMETATLPPNTYDLIVIQWTAIYL---TDADFVK--FFKHCQQALTPNGYIFFKE 197

Query: 210 CNSTKDELVHEVSNLS 225
             ST D  + +  + S
Sbjct: 198 NCSTGDRFLVDKEDSS 213

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 48.4 bits (114), Expect = 7e-07
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 13/151 (8%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGFSCIKFLV 154
           +VLD+G G G  L +  K   + L   D ++ ++   Q            +     +F+ 
Sbjct: 37  TVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT 96

Query: 155 DDVLDTKLERQFQLVMDKGTL----DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210
            D     L  +F+       +           +   +  M   +  + ++PGG  + T+ 
Sbjct: 97  ADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156

Query: 211 NSTKDELVHEVSNLSQRRIGVSQEHEIKDEE 241
           NS   EL+  +        G         ++
Sbjct: 157 NS--FELIRRLEASETESFGNEIYTVKFQKK 185

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 22/112 (19%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           +LD+G+G G     L+  G   + G++ +   + LA     R     + F    + D   
Sbjct: 45  ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELA-----RQTHPSVTFHHGTITDLSD 98

Query: 163 ERQFQLVMDKGTLDAI----GLH--PDGPLKRIMYWDSVSKLVAPGGLLVIT 208
                          +     L     G L   +   ++   V  GG L+++
Sbjct: 99  SP--------KRWAGLLAWYSLIHMGPGELPDAL--VALRMAVEDGGGLLMS 140

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 16/117 (13%)

Query: 102 SVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQS------LANRDGFSCIKFL 153
           +++D G G+G LL  L         + GVD S   +  A                     
Sbjct: 724 TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY 783

Query: 154 VDDVLDTKLE-RQFQLVMDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVIT 208
              +L+         +     T   +  H  +         + V  L  P  L+V T
Sbjct: 784 DGSILEFDSRLHDVDIG----TCLEVIEHMEEDQACEFG--EKVLSLFHPKLLIVST 834

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           VLDIG+G G     ++++  +   G+D   + +N+A    + +    I F  +D+L  + 
Sbjct: 59  VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNK--IIFEANDILTKEF 116

Query: 163 E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE 216
               F L+  +  + A+    +    +   +    K + P G L+IT   +T+ E
Sbjct: 117 PENNFDLIYSRDAILALS-LEN----KNKLFQKCYKWLKPTGTLLITDYCATEKE 166

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDV 157
              +LD+G G G++   L+ +     T  D +  AI LA+     +      I+ +  D+
Sbjct: 53  DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111

Query: 158 LDTKLERQFQLV 169
            +   +R++  +
Sbjct: 112 YENVKDRKYNKI 123

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 21/110 (19%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           +LD+G G G L +++++ G +++ G D +   I  A     R  +  + F V D  + ++
Sbjct: 61  ILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKA-----RQNYPHLHFDVADARNFRV 114

Query: 163 ERQFQLVMDKGTLDAIGLH----PDGPLKRIMYWDSVSKLVAPGGLLVIT 208
           ++    V          LH    P+  +  I       + +  GG  V  
Sbjct: 115 DKPLDAV-----FSNAMLHWVKEPEAAIASIH------QALKSGGRFVAE 153

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 99  SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 158
            +   LD G G G + + L    F ++  VD +ED +  A++    +G     +    + 
Sbjct: 79  GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 138

Query: 159 DTKLER-QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL 217
           D   E   + ++  +  +  +    D  L    +       + P G++VI    + +  +
Sbjct: 139 DFTPEPDSYDVIWIQWVIGHL---TDQHLAE--FLRRCKGSLRPNGIIVIKDNMAQEGVI 193

Query: 218 VHEV 221
           + +V
Sbjct: 194 LDDV 197

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 161
           VLD+G G G     L+      +TG+  S   +N A + A   G +  + F   D +D  
Sbjct: 65  VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124

Query: 162 LERQFQLVMDKGTLDAI-----GLH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215
            E          + DA+       H PD    R      +++++ PGG + I        
Sbjct: 125 FE--------DASFDAVWALESLHHMPD----RGRALREMARVLRPGGTVAIADFVLLAP 172

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 102 SVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSL--ANRDGFSCIKFLVDDV 157
            ++D+G G G    +++++   F  + G D S   I  A+ +   + D +  + F +   
Sbjct: 39  LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS 98

Query: 158 LDTKLERQFQLVMDKGTLDAI----GLH-PDGPLKRIMYWDSVSKLVAPGGLLVI 207
            D   +      +DK  +D I      H  D       +  S    +   G + I
Sbjct: 99  DD--FKFLGADSVDKQKIDMITAVECAHWFDFEK----FQRSAYANLRKDGTIAI 147

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 23/149 (15%)

Query: 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
             VLDIG G G      S     +  GVD +++ + +A S A   G   ++F        
Sbjct: 23  HRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES- 80

Query: 161 KLERQFQLVMDKGTLDAI----GLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212
                  L     + D I      H        ++       V++++   G  ++    +
Sbjct: 81  -------LPFPDDSFDIITCRYAAHHFSDVRKAVR------EVARVLKQDGRFLLVDHYA 127

Query: 213 TKDELVHEVSNLSQRRIGVSQEHEIKDEE 241
            +D ++ E  N   R    S   E    E
Sbjct: 128 PEDPVLDEFVNHLNRLRDPSHVRESSLSE 156

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 98  LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 156
           +++ + +DIG+G G L   L+KQ    +  +D+S+    +A         +  I+ +  D
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101

Query: 157 VLD 159
           V +
Sbjct: 102 VHN 104

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 16/106 (15%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            VL+ G G+G        Q        D+S + + LA++ A                + K
Sbjct: 51  RVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHADV--------YEWNGK 101

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
            E              I +   GP         + +L AP    + 
Sbjct: 102 GELPAG---LGAPFGLI-VSRRGPTS---VILRLPELAAPDAHFLY 140

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 18/117 (15%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 161
           ++D G G G  +    ++  S + GV  S    +     A        ++  V ++LDT 
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180

Query: 162 LERQFQLVMDKGTLDAIG-----LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213
            +        KG + A       ++ D        +   S+ +  GG  V  +    
Sbjct: 181 FD--------KGAVTASWNNESTMYVDLHD----LFSEHSRFLKVGGRYVTITGCWN 225

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 86  LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 145
           L++       + +    VLD+G G G L   L++   +++ GV+    ++   Q     +
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEAN 278

Query: 146 GFSCIKFLVDDVLDTKLERQFQLVM-------DKGTLDAIGLHPDGPLKRIMYWDSVSKL 198
                    D       E +F +++           +  +               + ++L
Sbjct: 279 ALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQA--------FVNVAAARL 330

Query: 199 VAPGGLLVI 207
             PGG+  +
Sbjct: 331 -RPGGVFFL 338

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 100 SWSVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 155
              +LD+GTG G     L  E       ++  VD   DA++LAQ  A       I  L  
Sbjct: 110 PCRILDLGTGTGAIALALASERPD---CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS 166

Query: 156 DVLDTKLERQFQLV 169
           D       +QF ++
Sbjct: 167 DWFSALAGQQFAMI 180

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 102 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
           +  D+G G G   + L+ + G + +TG+D  +D +  A             F   D+   
Sbjct: 36  NGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPN-----TNFGKADLATW 90

Query: 161 KLERQFQLV 169
           K  ++  L+
Sbjct: 91  KPAQKADLL 99

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 72  ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVD 129
           +S++  + L    D     V+E D       V+D   GNG     L+     +  + G D
Sbjct: 1   MSLTIKNSLGQSHDYIKMFVKEGDT------VVDATCGNGNDTAFLASLVGENGRVFGFD 54

Query: 130 YSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQ-------FQLVMDKGTLDAIGLH 181
             + AI               +  + D   +             F L        +I   
Sbjct: 55  IQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTR 114

Query: 182 PDGPLKRIMYWDSVSKLVAPGGLLVIT---SCNSTKDE---LVHEVSNLSQRRIGVSQ 233
           P+  ++ +       +L+  GG++ +      ++  +E   ++  +  + Q++  V +
Sbjct: 115 PETTIQAL---SKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQR 169

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 25/135 (18%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-----------------R 144
            V     G  + ++  + +G   + GV+ SE  I    +  N                 +
Sbjct: 71  RVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFK 129

Query: 145 DGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG 202
                I      + D       +F  + D+G L AI      P     Y D +  L+   
Sbjct: 130 SSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAI-----NPGDHDRYADIILSLLRKE 184

Query: 203 GLLVITSCNSTKDEL 217
              ++   +    + 
Sbjct: 185 FQYLVAVLSYDPTKH 199

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 19/117 (16%)

Query: 99  SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 157
           +   VLD+G G G+L    ++      LT  D S  A+  +++    +G    +    +V
Sbjct: 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG-EVFASNV 254

Query: 158 LDTKLERQFQLVM-------DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
              +++ +F +++          T             + +   +V  L   GG L I
Sbjct: 255 FS-EVKGRFDMIISNPPFHDGMQTSLDAA--------QTLIRGAVRHL-NSGGELRI 301

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 23/149 (15%)

Query: 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
             VLD+ TG G +    +      +   D +ED + +A++    +G   ++++  D    
Sbjct: 39  EEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ- 96

Query: 161 KLERQFQLVMDKGTLDAI----GLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212
                  +         +      H    P   +          +++  GG L++   ++
Sbjct: 97  -------MPFTDERFHIVTCRIAAHHFPNPASFVS------EAYRVLKKGGQLLLVDNSA 143

Query: 213 TKDELVHEVSNLSQRRIGVSQEHEIKDEE 241
            +++      N  ++    S     K  +
Sbjct: 144 PENDAFDVFYNYVEKERDYSHHRAWKKSD 172

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 27/141 (19%)

Query: 80  LNHVEDLKSEPVEENDKYLS---SWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDA 134
           L+    L+    E+  K        +VLD+GTG G  L  LSK       +  +D  E+ 
Sbjct: 15  LDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM 74

Query: 135 INLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI----GLH----PDGPL 186
           +N A    N+ G   ++ L  +     L           T+D I      H    P   L
Sbjct: 75  VNYAWEKVNKLGLKNVEVLKSEENKIPLP--------DNTVDFIFMAFTFHELSEPLKFL 126

Query: 187 KRIMYWDSVSKLVAPGGLLVI 207
           + +       ++  P   L I
Sbjct: 127 EELK------RVAKPFAYLAI 141

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
           +V D+GTG+G+L     K G   +   D S++++  A+  A  +G   I      +L   
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA-D 121

Query: 162 LERQFQLVMDKGTLDA-IGLHPDGPLKRIMYWDSVSKLVAPGGLLV 206
           ++ +F L++      A I L     L  ++    +   +   G ++
Sbjct: 122 VDGKFDLIV------ANI-LA--EILLDLI--PQLDSHLNEDGQVI 156

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 53/224 (23%)

Query: 3   VLIVVSIVYSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDV 62
           V+    +   SD E    EG    L  +         E+    E G    + F   +   
Sbjct: 141 VVAPKGVYERSDVEARRQEG----LPERVGVVYGEVPEVLEVEEDG----LRFPIPLAL- 191

Query: 63  VASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSW-----SVLDIGTGNGLLLQEL 117
                     +   G+ L+           EN +   +       VLD+ +  G      
Sbjct: 192 ----------AQKTGYYLDQ---------RENRRLFEAMVRPGERVLDVYSYVGGFALRA 232

Query: 118 SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KLERQFQLV-MD--- 171
           +++G +    VD   +A+ +    A R G   +     + L T   LE  F  V +D   
Sbjct: 233 ARKG-AYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVLLDPPT 290

Query: 172 -----KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210
                +          D  ++  +      +L+A  G L ++SC
Sbjct: 291 LVKRPEELPAMKRHLVDL-VREAL------RLLAEEGFLWLSSC 327

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ------SLANRDGFSCIKFLVDD 156
           ++D+ +GNG++   LS +  + + GV+  E   ++A+       L ++     I++ +  
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQ--IEIIEYDLKK 110

Query: 157 VLDTKLERQFQLVM 170
           + D   + +  +V 
Sbjct: 111 ITDLIPKERADIVT 124

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 29/149 (19%)

Query: 126 TGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLD-----TKLERQFQLV-MD------ 171
           T VD S+ AI  A+      G   + I+++ +D +       +    + ++  D      
Sbjct: 179 THVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGR 238

Query: 172 --KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK------DELVHEVSN 223
              G +  +  H    L  ++  D   ++++P  L ++ +  S +       EL+ E   
Sbjct: 239 GTHGEVWQLFDH----LPLML--DICREILSPKALGLVLTAYSIRASFYSMHELMRETMR 292

Query: 224 LSQRRIGVSQEHEIKDEEACREPPFRYLN 252
            +   +  S E  I++     + P R L+
Sbjct: 293 GAGGVVA-SGELVIREAGLDGKTPGRVLS 320

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 31/158 (19%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
            ++D G GNG   + L +   + L  +D +  A+        ++ F  +  L D      
Sbjct: 20  VIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEV-----KEKFDSVITLSDP----- 68

Query: 162 LERQFQLVMDKGTLDAI----GLH----PDGPLKRIMYWDSVSKLVAPGGLLVITSCNST 213
                   +   ++D I      H        +  +       +++   G ++I      
Sbjct: 69  ------KEIPDNSVDFILFANSFHDMDDKQHVISEV------KRILKDDGRVIIIDWRKE 116

Query: 214 KDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYL 251
              +   +S     +  +        E+     P+ + 
Sbjct: 117 NTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHFG 154

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 12/101 (11%), Positives = 37/101 (36%), Gaps = 23/101 (22%)

Query: 126 TGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLD-----TKLERQFQLV-MD------ 171
           T VD ++ +  L+ +    +       + +V DV D      +    + ++ +D      
Sbjct: 239 TSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFAR 298

Query: 172 --KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210
             K        +      +++      ++++  GL++ ++ 
Sbjct: 299 NKKEVFSVSKDY-----HKLIRQ--GLEILSENGLIIASTN 332

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 46/226 (20%)

Query: 3   VLIVVSIVYSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDV 62
           +    SI   SD      EGM    G            L    EHG    +    D+   
Sbjct: 147 LYPECSIYDRSDVAVRKKEGMELTQG---PVTGELPPALLPIEEHG----MKLLVDIQH- 198

Query: 63  VASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF 122
                         G+ L+  +   +       +Y+ +  VL+  +  G         G 
Sbjct: 199 ----------GHKTGYYLDQRDSRLAT-----RRYVENKRVLNCFSYTGGFAVSALMGGC 243

Query: 123 SDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDT-----KLERQFQLV-MD--- 171
           S +  VD S++A+++A+     +       +F+ DDV            +F ++ MD   
Sbjct: 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK 303

Query: 172 -----KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212
                   + A   +     K I       +L+  GG+L+  SC+ 
Sbjct: 304 FVENKSQLMGACRGY-----KDINM--LAIQLLNEGGILLTFSCSG 342

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 19/111 (17%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           + DIG G G     L+ QG   +  V+ S      A           +++      +  L
Sbjct: 38  IADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHPQ------VEWFTGYAENLAL 90

Query: 163 E-RQFQLVMDKGTLDAIGLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSC 210
             +    V+       + +H       K       + +    G ++++T  
Sbjct: 91  PDKSVDGVI-----SILAIHHFSH-LEKSFQEMQRIIR---DGTIVLLTFD 132

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 100 SWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQ---SLANRDGFSCIKFLVD 155
              ++D+G GNG++   L      + +  VD S  A+  ++        +     +F+++
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN 282

Query: 156 DVLDTKLERQFQLVM-------DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
           + L      +F  V+            D +           M+  +   L    G L I
Sbjct: 283 NALSGVEPFRFNAVLCNPPFHQQHALTDNVAWE--------MFHHARRCL-KINGELYI 332

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 102 SVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 156
             L+IGTG+     L+ ++        +T  +  E+    A+    R+  +  +      
Sbjct: 58  VALEIGTGHTAMMALMAEKFFN---CKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114

Query: 157 VLDTKLERQFQLV 169
           ++   +E  F ++
Sbjct: 115 IIKGVVEGTFDVI 127

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 98  LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 149
           +   SV+D GTGNG+L       G   +T  D   DAI  A+       F  
Sbjct: 50  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 101

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 99  SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLV 154
              +V DIGTG+G   + + + S    + +   D S  A+ +A+  A R G S       
Sbjct: 123 GIKTVADIGTGSGAIGVSVAKFSD---AIVFATDVSSKAVEIARKNAERHGVSDRFFVRK 179

Query: 155 DDVLD 159
            + L+
Sbjct: 180 GEFLE 184

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 20/130 (15%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDGFSC 149
            VL    G    +  LS QG+  + G + SE A+    +                     
Sbjct: 25  RVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 83

Query: 150 IKFLVDDVLDT--KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
           I+    D      +         D+  + A+         R  Y   +  L+      ++
Sbjct: 84  IEIWCGDFFALTARDIGHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLL 138

Query: 208 TSCNSTKDEL 217
            +    +  L
Sbjct: 139 ITLEYDQALL 148

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 27/118 (22%)

Query: 102 SVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVD 155
             + I    GL    +L  L+      LT +D   +    A++L    G+  S ++FL+ 
Sbjct: 59  GAIAITPAAGLVGLYILNGLADNTT--LTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116

Query: 156 ---DVLDTKLERQFQLVM---DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
              DV+       +QLV        L A               D+   L+  GG LV+
Sbjct: 117 RPLDVMSRLANDSYQLVFGQVSPMDLKA-------------LVDAAWPLLRRGGALVL 161

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 119 KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 178
             GF ++  VD S +A+  A+  A  +G   ++ L  +  D  L    +L  +    D +
Sbjct: 228 ALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL-LR---RLEKEGERFDLV 283

Query: 179 GLHP------DGPLKRIM--YWD---SVSKLVAPGGLLVITSCNS 212
            L P         ++R    Y +      KL+  GG+L   SC+ 
Sbjct: 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 99  SSWSVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV 154
           S   V+D+GTG+G     +           +T VD S DA+ +A+  A R G   + +  
Sbjct: 30  SGTRVIDVGTGSGCIAVSIALACPG---VSVTAVDLSMDALAVARRNAERFGAV-VDWAA 85

Query: 155 DDVLD-----TKLERQFQLV 169
            D ++      +  R +  +
Sbjct: 86  ADGIEWLIERAERGRPWHAI 105

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 27/135 (20%)

Query: 84  EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 143
             +    ++E+D+      +LDIG G+G +  EL+ +G+  +TG+D + +AI LA++ A 
Sbjct: 21  YPIIHNYLQEDDE------ILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAAR 73

Query: 144 RDGFS-----CIKFLVDDVLDTKLERQFQLVMDKGTLDAI----GLH--PDGPLKRIMYW 192
             G +       +F V++           L     + D       L   PD P +R    
Sbjct: 74  SPGLNQKTGGKAEFKVENASS--------LSFHDSSFDFAVMQAFLTSVPD-PKERSRII 124

Query: 193 DSVSKLVAPGGLLVI 207
             V +++ PG  L +
Sbjct: 125 KEVFRVLKPGAYLYL 139

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 102 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 160
            VLD+G   G L   ++ + G S + G+D     I+ A+          ++     +   
Sbjct: 49  DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGD 108

Query: 161 KLERQFQLVMDKGTLD 176
                 +         
Sbjct: 109 PGAEGEEGTTTVRKRS 124

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 24/115 (20%)

Query: 102 SVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 156
            V+  G G G       + +S      +  +D   D +  A+ + + +G    ++  V D
Sbjct: 59  LVVVPGDGLGCASWWFARAISISS--RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGD 116

Query: 157 VLDT-KLERQFQLVM---DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI 207
            L     +R   ++    D                     + +++ +A   LL+ 
Sbjct: 117 PLGIAAGQRDIDILFMDCDVFNGAD-------------VLERMNRCLAKNALLIA 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.86
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.79
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.78
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.77
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.76
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.76
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.76
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.76
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.75
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.74
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.74
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.73
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.73
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.73
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.72
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.72
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.72
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.72
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.72
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.72
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.72
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.72
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.72
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.72
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.72
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.72
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.72
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.71
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.71
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.71
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.71
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.7
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.7
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.7
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.7
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.69
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.69
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.69
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.69
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.69
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.69
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.69
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.69
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.68
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.68
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.68
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.68
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.68
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.68
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.68
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.68
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.68
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.68
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.68
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.68
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.67
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.67
3ocj_A	305	Putative exported protein; structural genomics, PS	99.67
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.67
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.67
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.67
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.67
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.67
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.67
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.67
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.67
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.67
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.67
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.67
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.67
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.67
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.67
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.66
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.66
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.66
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.66
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.66
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.66
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.66
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.66
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.66
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.66
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.65
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.65
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.65
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.65
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.65
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.65
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.65
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.65
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.65
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.65
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.64
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.64
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.63
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.63
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.63
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.63
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.63
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.63
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.62
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.62
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.62
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.62
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.62
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.62
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.62
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.62
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.62
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.62
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.62
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.62
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.61
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.61
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.61
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.61
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.61
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.61
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.61
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.6
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.6
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.6
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.6
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.6
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.6
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.6
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.6
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.6
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.59
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.59
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.59
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.59
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.59
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.59
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.58
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.58
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.58
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.58
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.57
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.57
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.57
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.57
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.57
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.57
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.57
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.57
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.57
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.57
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.57
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.57
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.57
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.56
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.56
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.56
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.56
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.56
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.56
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.55
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.55
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.55
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.55
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.55
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.55
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.55
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.55
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.54
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.54
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.54
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.54
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.54
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.54
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.53
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.53
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.53
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.53
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.53
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.53
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.53
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.53
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.53
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.53
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.53
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.52
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.52
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.52
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.52
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.51
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.51
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.51
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.51
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.51
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.51
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.51
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.5
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.5
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.5
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.49
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.49
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.48
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.48
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.48
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.48
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.48
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.48
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.47
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.47
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.47
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.46
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.46
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.46
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.46
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.46
2o07_A	304	Spermidine synthase; structural genomics, structur	99.45
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.45
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.44
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.44
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.44
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.44
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.44
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.44
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.44
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.44
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.43
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.42
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.42
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.41
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.41
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.41
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.41
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.41
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.4
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.4
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.39
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.39
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.39
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.39
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.37
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.37
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.37
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.36
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.36
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.35
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.35
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.34
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.34
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.34
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.33
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.32
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.32
3lkd_A	542	Type I restriction-modification system methyltrans	99.31
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.29
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.26
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.25
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.23
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.19
3khk_A	544	Type I restriction-modification system methylation	99.18
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.17
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.14
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.14
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.14
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.12
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.11
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.09
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.08
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.07
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.05
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.01
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.98
3ufb_A	530	Type I restriction-modification system methyltran	98.96
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.96
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.96
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.94
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.93
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.87
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.81
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.77
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.75
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.7
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.62
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.54
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.45
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.45
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.44
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.43
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.39
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.38
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.33
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.26
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.22
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.17
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.09
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.02
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.01
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.82
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.77
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.59
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.53
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.51
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.33
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.24
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.15
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.0
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.89
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.8
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.67
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.67
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.66
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.63
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.56
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.56
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.5
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.5
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.45
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.43
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.43
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.42
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.16
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.15
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.08
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.03
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.0
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.88
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.84
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.77
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.73
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.72
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.72
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	95.65
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.64
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.6
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.55
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.51
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.5
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.46
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.45
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	95.43
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.42
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.4
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.35
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.32
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	95.15
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.12
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.04
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.95
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.93
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.91
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.9
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.88
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.87
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.86
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.85
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.74
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.69
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.68
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	94.66
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.6
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.56
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.53
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.46
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.4
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	94.39
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.28
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	94.19
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.18
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.13
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.13
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.08
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.94
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.89
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.85
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.79
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.76
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.76
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	93.64
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.64
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	93.62
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.59
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.55
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	93.53
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.52
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.52
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	93.51
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.46
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	93.4
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	93.39
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	93.38
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.34
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.3
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.23
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.09
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.07
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.04
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.97
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.96
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.81
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	92.8
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	92.77
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	92.72
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	92.45
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.4
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	92.38
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	92.37
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	92.34
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.26
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	92.22
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.13
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.08
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.08
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	92.07
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.07
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.07
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.06
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	91.81
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.81
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.8
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	91.55
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	91.51
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	91.46
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	91.2
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.04
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.01
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	90.94
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	90.76
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	90.69
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.65
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.55
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.53
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	90.51
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	90.43
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	90.3
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	90.3
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	90.27
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	90.25
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	90.19
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.1
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	90.1
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	89.92
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.84
4dqx_A	277	Probable oxidoreductase protein; structural genomi	89.78
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	89.73
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.45
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	89.39
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	89.33
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	89.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.97
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.91
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	88.89
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	88.86
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	88.65
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	88.42
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	88.34
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.29
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	88.25
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	88.2
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.17
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	88.14
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	87.93
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	87.88
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	87.83
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	87.81
3imf_A	257	Short chain dehydrogenase; structural genomics, in	87.58
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	87.56
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	87.52
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	87.5
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	87.43
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.39
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	87.13
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.91
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	86.77
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	86.69
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	86.62
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	86.56
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	86.53
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.39
1lnq_A	336	MTHK channels, potassium channel related protein;	86.21
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	86.2
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	86.03
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	85.92
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	85.9
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	85.81
3rih_A	293	Short chain dehydrogenase or reductase; structural	85.78
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	85.76
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	85.67
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	85.36
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	85.27
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	85.26
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	85.21
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	85.19
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	85.17
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	84.99
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	84.91
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	84.74

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.86  E-value=2.9e-21  Score=160.25  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=111.1

Q ss_pred             CCCCCCccccCcHHHHHHHHHHHhhchhccCCccccccCcchhhHHhhhhcccccccccCcccccccccccchhhhcccc
Q 023703           18 PDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKY   97 (278)
Q Consensus        18 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (278)
                      .|.++..+.+...+||+..|......+.         .... ...+..|.                        ..+...
T Consensus        21 ~~~e~~~~~~~~~~~Wd~~y~~~~~~~~---------~~~~-~~~l~~~~------------------------~~~~~~   66 (252)
T 2gb4_A           21 PDAEVQKNQVLTLEDWKEKWVTRHISFH---------QEQG-HQLLKKHL------------------------DTFLKG   66 (252)
T ss_dssp             -CTTTTTTCCCCHHHHHHHHHHTCCTTC---------CTTC-CHHHHHHH------------------------HHHHTT
T ss_pred             CCccccccccCCHHHHHHHHhcCCCCcc---------cCCC-CHHHHHHH------------------------HHhccC
Confidence            4566778888889999999987533321         0111 01111111                        111112


Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-----------------CCCcceEEEEccccCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-----------------DGFSCIKFLVDDVLDT  160 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-----------------~~~~~~~~~~~d~~~~  160 (278)
                      .++.+|||+|||+|..+..|++.|+ +|+|+|+|+.+++.|+++...                 ....+++++++|+.+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            3677999999999999999999987 899999999999999877531                 0114799999999998


Q ss_pred             ccC--CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          161 KLE--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       161 ~~~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.  ++||+|++..++.++.     ......+++++.++|||||++++.+
T Consensus       146 ~~~~~~~FD~V~~~~~l~~l~-----~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          146 PRANIGKFDRIWDRGALVAIN-----PGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GGGCCCCEEEEEESSSTTTSC-----GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CcccCCCEEEEEEhhhhhhCC-----HHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            764  7999999998887763     3456778899999999999997654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.79  E-value=1.2e-18  Score=145.23  Aligned_cols=111  Identities=19%  Similarity=0.223  Sum_probs=93.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC---CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG---FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      ..++.+|||+|||+|..+..+++..   ..+|+|+|+|+.|++.|++++...+.. +++++++|+.+.+. +.||+|+++
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~  146 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN  146 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceee
Confidence            4678899999999999999998861   238999999999999999998877654 59999999998765 569999998


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .+++++.     +.+...++++++++|||||.+++.+....
T Consensus       147 ~~l~~~~-----~~~~~~~l~~i~~~LkpGG~lii~e~~~~  182 (261)
T 4gek_A          147 FTLQFLE-----PSERQALLDKIYQGLNPGGALVLSEKFSF  182 (261)
T ss_dssp             SCGGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             eeeeecC-----chhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence            8887664     44667889999999999999999875443

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.78  E-value=5.5e-19  Score=142.03  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=88.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC------------CCcceEEEEccccCCccC--
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------------GFSCIKFLVDDVLDTKLE--  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~------------~~~~~~~~~~d~~~~~~~--  163 (278)
                      .++.+|||+|||+|..+..+++.|+ +|+|+|+|+.|++.|+++....            ...+++++++|+.+.++.  
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            4678999999999999999999986 8999999999999999886431            124799999999998753  


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++||+|++..+++++.     ......+++++.++|||||++++.+.
T Consensus       100 ~~fD~v~~~~~l~~l~-----~~~~~~~l~~~~r~LkpgG~~~l~~~  141 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALP-----ADMRERYVQHLEALMPQACSGLLITL  141 (203)
T ss_dssp             HSEEEEEEESCGGGSC-----HHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CCEEEEEECcchhhCC-----HHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            7899999988887663     34566788999999999998555543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.77  E-value=1.3e-18  Score=138.14  Aligned_cols=109  Identities=16%  Similarity=0.160  Sum_probs=93.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---CCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++++.+++++++++++|+.+...   +++||+|+++.+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            57789999999999999988888766899999999999999999998887789999999987642   678999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHh--cccCCcEEEEEecCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSK--LVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~  212 (278)
                      +.+.      ......+++.+.+  +|+|||.+++.....
T Consensus       123 ~~~~------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          123 YNVD------SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             TTSC------HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCcc------hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            7643      1366778889988  999999999987654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.76  E-value=3.7e-18  Score=137.81  Aligned_cols=114  Identities=27%  Similarity=0.378  Sum_probs=95.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++....  +++.++++|+.+.+. +++||+|+++++++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV--PQLRWETMDVRKLDFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC--TTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC--CCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence            467799999999999999999987558999999999999999988642  479999999988754 57899999999987


Q ss_pred             eeccCCC--------ChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPD--------GPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++.....        .......+++++.++|||||.+++.+++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence            7642211        133567888999999999999999988764

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.76  E-value=7.1e-18  Score=134.53  Aligned_cols=106  Identities=19%  Similarity=0.297  Sum_probs=92.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      ++.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++...+++++.+..+|+.+.+.+++||+|++..+++++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~  110 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFL  110 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGGGS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhhhC
Confidence            567999999999999999999865 8999999999999999999888776799999999887667889999999888765


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .     ..+...+++++.++|+|||.+++.+.
T Consensus       111 ~-----~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A          111 E-----AKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             C-----GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             C-----HHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            3     34667888999999999999887653

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.76  E-value=5.5e-18  Score=139.08  Aligned_cols=108  Identities=23%  Similarity=0.254  Sum_probs=92.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+. .+++++++|+.+..++++||+|++..++++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            345999999999999999998764 899999999999999999876432 469999999999877789999999888876


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +.     +.....+++++.++|||||.+++.....
T Consensus       145 ~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          145 IE-----PEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             SC-----GGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CC-----HHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            63     4567788899999999999999876543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.76  E-value=2.9e-18  Score=142.90  Aligned_cols=108  Identities=16%  Similarity=0.325  Sum_probs=94.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      ..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+++++.+.++|+.+.+. +++||+|++..++
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l  113 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA  113 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhh
Confidence            35778999999999999999999864 999999999999999999988887789999999998765 5799999999998


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++.       +...+++++.++|||||.+++.....
T Consensus       114 ~~~~-------d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          114 HHFP-------NPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             GGCS-------CHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             HhcC-------CHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            8875       66788899999999999999976443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.75  E-value=5.2e-18  Score=139.95  Aligned_cols=111  Identities=22%  Similarity=0.331  Sum_probs=95.3

Q ss_pred             hhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEe
Q 023703           92 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  171 (278)
Q Consensus        92 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  171 (278)
                      ..+....++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++...    +++++++|+.+...+++||+|++
T Consensus        35 ~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~~~~fD~v~~  109 (250)
T 2p7i_A           35 RAFTPFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQLPRRYDNIVL  109 (250)
T ss_dssp             HHHGGGCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCCSSCEEEEEE
T ss_pred             HHHHhhcCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCcCCcccEEEE
Confidence            3334445677999999999999999999875 899999999999999988643    68999999988766789999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHH-hcccCCcEEEEEecCCCh
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVS-KLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~  214 (278)
                      ..+++++.       +...+++++. ++|||||.+++..++...
T Consensus       110 ~~~l~~~~-------~~~~~l~~~~~~~LkpgG~l~i~~~~~~~  146 (250)
T 2p7i_A          110 THVLEHID-------DPVALLKRINDDWLAEGGRLFLVCPNANA  146 (250)
T ss_dssp             ESCGGGCS-------SHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred             hhHHHhhc-------CHHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence            99998885       5678889999 999999999999877654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=3.3e-18  Score=142.14  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=97.3

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-CCCcc
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQ  167 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~fD  167 (278)
                      ++..+....++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.+++++...++.+ ++++++|+.+.+. +++||
T Consensus        37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD  116 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELD  116 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEE
T ss_pred             HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEE
Confidence            444445556788999999999999999999854499999999999999999999888765 9999999988764 58899


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +|++..+++++        +...+++++.++|||||.+++.+++
T Consensus       117 ~v~~~~~l~~~--------~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          117 LIWSEGAIYNI--------GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             EEEEESCSCCC--------CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             EEEecChHhhc--------CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            99999888765        3456789999999999999998753

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.75  E-value=9.1e-18  Score=140.44  Aligned_cols=114  Identities=20%  Similarity=0.313  Sum_probs=97.3

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-CCCcc
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQ  167 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~fD  167 (278)
                      ++..+....++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|+++++..++++ ++++++|+.+.+. +++||
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  116 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELD  116 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEE
T ss_pred             HHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEE
Confidence            333444456788999999999999999999965599999999999999999999888754 9999999988764 57899


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +|++..+++++        +...+++++.++|||||.+++.++.
T Consensus       117 ~i~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          117 LIWSEGAIYNI--------GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             EEEESSCGGGT--------CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             EEEEcCCceec--------CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            99999998766        3466789999999999999998753

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.75  E-value=7e-18  Score=138.90  Aligned_cols=111  Identities=17%  Similarity=0.287  Sum_probs=96.6

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++...+++++.++++|+.+.+. +++||+|++..+
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~   96 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA   96 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc
Confidence            345778999999999999999999864 899999999999999999988887789999999988765 478999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++++.       +...+++++.++|||||.+++.....+.
T Consensus        97 l~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~  129 (239)
T 1xxl_A           97 AHHFS-------DVRKAVREVARVLKQDGRFLLVDHYAPE  129 (239)
T ss_dssp             GGGCS-------CHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred             hhhcc-------CHHHHHHHHHHHcCCCcEEEEEEcCCCC
Confidence            88775       5677889999999999999998765443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.74  E-value=4.1e-17  Score=134.63  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=94.5

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC------CCccEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE------RQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~------~~fD~v  169 (278)
                      ...++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++..   .+++++++|+.+....      ..||+|
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA---ANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC---TTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc---cCceEEECcccccccccccccccCccEE
Confidence            346778999999999999999999875 899999999999999998732   3799999999886432      348999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      ++..+++++.     ..+...+++++.++|||||.+++.+..........
T Consensus       129 ~~~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~  173 (245)
T 3ggd_A          129 YMRTGFHHIP-----VEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFN  173 (245)
T ss_dssp             EEESSSTTSC-----GGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHH
T ss_pred             EEcchhhcCC-----HHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHH
Confidence            9988876653     44677888999999999999999887776554443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.74  E-value=1.1e-17  Score=138.89  Aligned_cols=109  Identities=20%  Similarity=0.242  Sum_probs=93.9

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++. ++.++++|+.+.+++++||+|++..+
T Consensus        33 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~  112 (256)
T 1nkv_A           33 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGA  112 (256)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCC
Confidence            34678899999999999999999862248999999999999999999888874 69999999998766788999999888


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.       +...+++++.++|||||.+++.++.
T Consensus       113 ~~~~~-------~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          113 TWIAG-------GFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             GGGTS-------SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             hHhcC-------CHHHHHHHHHHHcCCCeEEEEecCc
Confidence            87664       4567789999999999999998643

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.73  E-value=1.2e-17  Score=135.26  Aligned_cols=110  Identities=25%  Similarity=0.284  Sum_probs=94.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...  .+++++++|+.+..++++||+|+++.++
T Consensus        48 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~fD~v~~~~~l  124 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFSTAELFDLIVVAEVL  124 (216)
T ss_dssp             TTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCCSCCEEEEEEESCG
T ss_pred             ccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCCCCCccEEEEccHH
Confidence            34567799999999999999999986 48999999999999999998765  3799999999998778899999999888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++.    ++.....+++++.++|||||.+++.++..
T Consensus       125 ~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          125 YYLE----DMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             GGSS----SHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             HhCC----CHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            7764    23445678899999999999999987643

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.73  E-value=1.9e-17  Score=135.67  Aligned_cols=117  Identities=16%  Similarity=0.243  Sum_probs=96.9

Q ss_pred             hhccccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEE
Q 023703           92 EENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  170 (278)
Q Consensus        92 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~  170 (278)
                      ..+....++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|++++...+  ++.++++|+.+.+..++||+|+
T Consensus        37 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~  114 (234)
T 3dtn_A           37 SIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFEEKYDMVV  114 (234)
T ss_dssp             HTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCCSCEEEEE
T ss_pred             HHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCCCCceEEE
Confidence            333334577899999999999999999872 3489999999999999999987654  7999999999987778999999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      +..+++++.     ......+++++.++|||||.+++.+......
T Consensus       115 ~~~~l~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  154 (234)
T 3dtn_A          115 SALSIHHLE-----DEDKKELYKRSYSILKESGIFINADLVHGET  154 (234)
T ss_dssp             EESCGGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred             EeCccccCC-----HHHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence            999887774     3344468899999999999999988655443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.73  E-value=2.9e-17  Score=136.92  Aligned_cols=134  Identities=13%  Similarity=0.127  Sum_probs=104.6

Q ss_pred             hhhhccccC-CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc---CC
Q 023703           90 PVEENDKYL-SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ER  164 (278)
Q Consensus        90 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~---~~  164 (278)
                      ++....... ++.+|||+|||+|.++..++..+..+|+|+|+++.+++.|++++..+++. +++++++|+.+...   .+
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~  118 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKE  118 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTT
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccC
Confidence            344444555 78899999999999999999986559999999999999999999998876 49999999988753   58


Q ss_pred             CccEEEeCCccceec---c-C---------CCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          165 QFQLVMDKGTLDAIG---L-H---------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~---~-~---------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      +||+|++++++....   . .         .........+++.+.++|||||++++........++...+..
T Consensus       119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  190 (259)
T 3lpm_A          119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRK  190 (259)
T ss_dssp             CEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHH
T ss_pred             CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHH
Confidence            899999999875431   0 0         011134567889999999999999998877777777766654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.72  E-value=1e-17  Score=139.16  Aligned_cols=100  Identities=19%  Similarity=0.270  Sum_probs=84.7

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~  177 (278)
                      .+.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++      +++.++++|+.+.+. +++||+|++..++++
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~  111 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH------PRVTYAVAPAEDTGLPPASVDVAIAAQAMHW  111 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC------TTEEEEECCTTCCCCCSSCEEEEEECSCCTT
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc------CCceeehhhhhhhcccCCcccEEEEeeehhH
Confidence            456999999999999999999974 899999999999887642      579999999998875 689999999988865


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +        +...+++++.++|||||.|++......
T Consensus       112 ~--------~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          112 F--------DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             C--------CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             h--------hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            4        345678999999999999988775443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.72  E-value=1.9e-17  Score=133.90  Aligned_cols=117  Identities=24%  Similarity=0.336  Sum_probs=96.8

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEE
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV  169 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v  169 (278)
                      ++..+....++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++    .+..+++++++|+.+...+++||+|
T Consensus        37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~~~~~D~v  111 (218)
T 3ou2_A           37 ALERLRAGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTPDRQWDAV  111 (218)
T ss_dssp             HHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred             HHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCCCCceeEE
Confidence            444445556778999999999999999999864 89999999999999987    4446799999999988567899999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      ++..+++++.     ......+++++.++|+|||.+++.+.+.+...
T Consensus       112 ~~~~~l~~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  153 (218)
T 3ou2_A          112 FFAHWLAHVP-----DDRFEAFWESVRSAVAPGGVVEFVDVTDHERR  153 (218)
T ss_dssp             EEESCGGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEECCCC--
T ss_pred             EEechhhcCC-----HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc
Confidence            9999888775     22357888999999999999999988775443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.72  E-value=3.6e-17  Score=138.12  Aligned_cols=110  Identities=20%  Similarity=0.203  Sum_probs=96.3

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEe
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  171 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  171 (278)
                      +....++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|++++...+. ++++.++|+.+.+.+++||+|++
T Consensus        17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~   95 (284)
T 3gu3_A           17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAIC   95 (284)
T ss_dssp             TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSSCEEEEEE
T ss_pred             HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcCCCeeEEEE
Confidence            334467789999999999999999987 2 25899999999999999999887764 89999999999877789999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ..+++++.       +...+++++.++|||||.+++.+++
T Consensus        96 ~~~l~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           96 HAFLLHMT-------TPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ESCGGGCS-------SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CChhhcCC-------CHHHHHHHHHHHcCCCCEEEEEecc
Confidence            99888775       5678889999999999999998876

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.72  E-value=3.8e-17  Score=137.46  Aligned_cols=155  Identities=19%  Similarity=0.270  Sum_probs=112.2

Q ss_pred             hhhcccccccccCcccccccccccchhhhc-ccc-CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHH
Q 023703           65 SWTKSLCISISQGHMLNHVEDLKSEPVEEN-DKY-LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  141 (278)
Q Consensus        65 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~  141 (278)
                      +|...+  .+..+.+.++++  ...++..+ ... .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++
T Consensus        77 f~~~~~--~~~~~~~ipr~~--te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n  152 (276)
T 2b3t_A           77 FWSLPL--FVSPATLIPRPD--TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN  152 (276)
T ss_dssp             ETTEEE--ECCTTSCCCCTT--HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH
T ss_pred             ECCceE--EeCCCCcccCch--HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence            455444  455666665432  22222222 211 46779999999999999999965 445899999999999999999


Q ss_pred             hhhCCCcceEEEEccccCCccCCCccEEEeCCccceecc---------CCC---------ChhhHHHHHHHHHhcccCCc
Q 023703          142 ANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGL---------HPD---------GPLKRIMYWDSVSKLVAPGG  203 (278)
Q Consensus       142 ~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~---------~~~---------~~~~~~~~l~~~~~~LkpgG  203 (278)
                      +..++++++.++++|+.+...+++||+|++++++.....         +.+         +......+++.+.++|+|||
T Consensus       153 ~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG  232 (276)
T 2b3t_A          153 AQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGG  232 (276)
T ss_dssp             HHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEE
T ss_pred             HHHcCCCceEEEEcchhhhcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence            998887789999999987544678999999987643210         111         11355778899999999999


Q ss_pred             EEEEEecCCChHHHHHHHhh
Q 023703          204 LLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~~  223 (278)
                      .+++.......+++...+..
T Consensus       233 ~l~~~~~~~~~~~~~~~l~~  252 (276)
T 2b3t_A          233 FLLLEHGWQQGEAVRQAFIL  252 (276)
T ss_dssp             EEEEECCSSCHHHHHHHHHH
T ss_pred             EEEEEECchHHHHHHHHHHH
Confidence            99999877777666665554

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.72  E-value=7e-17  Score=137.48  Aligned_cols=115  Identities=11%  Similarity=0.220  Sum_probs=98.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||||||+|.++..+++. | .+|+|+|+|+.+++.|++++...++. ++++..+|+.+.  +++||+|++..+
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~  146 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGA  146 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESC
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcch
Confidence            467889999999999999999998 7 58999999999999999999988876 699999999876  789999999999


Q ss_pred             cceeccCCC---ChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          175 LDAIGLHPD---GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       175 ~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      ++++. ++.   +......+++++.++|||||++++.+......
T Consensus       147 ~~~~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  189 (302)
T 3hem_A          147 FEHFA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK  189 (302)
T ss_dssp             GGGTT-CCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCH
T ss_pred             HHhcC-ccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCc
Confidence            88774 221   33566788999999999999999988665544

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.72  E-value=6.7e-18  Score=135.42  Aligned_cols=107  Identities=13%  Similarity=0.082  Sum_probs=89.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC--cceEEEEccccCCcc---CCC-ccEEEeC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTKL---ERQ-FQLVMDK  172 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~--~~~~~~~~d~~~~~~---~~~-fD~v~~~  172 (278)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..+++  ++++++++|+.+...   +++ ||+|+++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            6789999999999999998887766899999999999999999999887  589999999876432   468 9999998


Q ss_pred             CccceeccCCCChhhHHHHHHHH--HhcccCCcEEEEEecCCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSV--SKLVAPGGLLVITSCNST  213 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~  213 (278)
                      +++. .       .....+++.+  .++|+|||.+++......
T Consensus       133 ~~~~-~-------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          133 PPFH-F-------NLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CCSS-S-------CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCC-C-------ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            8853 1       1445566777  678999999999876654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.72  E-value=4.2e-17  Score=137.76  Aligned_cols=105  Identities=19%  Similarity=0.308  Sum_probs=93.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      ++.+|||+|||+|.++..++..|. +|+|+|+|+.+++.|++++...++ +++++++|+.+...+++||+|+++.+++++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~  197 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANIQENYDFIVSTVVFMFL  197 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCCCSCEEEEEECSSGGGS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccccCCccEEEEccchhhC
Confidence            678999999999999999999976 899999999999999999998887 899999999987778899999999998776


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .     ......+++++.++|+|||.+++...
T Consensus       198 ~-----~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          198 N-----RERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             C-----GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             C-----HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3     34667888999999999999877654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.72  E-value=7.9e-17  Score=127.68  Aligned_cols=113  Identities=17%  Similarity=0.238  Sum_probs=96.4

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..++..+ .+++++|+++.+++.+++++...++.+  ++++.+|+.+...+++||+|+++.+
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  128 (194)
T 1dus_A           50 VDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPP  128 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCC
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCC
Confidence            3477899999999999999999984 599999999999999999999888776  9999999988655678999999887


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      +++      .......+++++.++|+|||.+++..++.....
T Consensus       129 ~~~------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  164 (194)
T 1dus_A          129 IRA------GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAK  164 (194)
T ss_dssp             STT------CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHH
T ss_pred             ccc------chhHHHHHHHHHHHHcCCCCEEEEEECCCCChH
Confidence            653      123667888999999999999999988765443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.72  E-value=4e-17  Score=128.91  Aligned_cols=115  Identities=14%  Similarity=0.090  Sum_probs=88.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++++..+++++++++.|.....  .+++||+|+++..
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~   98 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG   98 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence            3577899999999999999999984 589999999999999999999888878999998877642  3678999988632


Q ss_pred             cceecc--CCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +-....  ....+.....+++++.++|||||.+++..+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A           99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            211000  00123456678899999999999999987643

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.72  E-value=3.1e-17  Score=138.47  Aligned_cols=108  Identities=22%  Similarity=0.364  Sum_probs=95.2

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc--cCCCccEEEeCCcc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDKGTL  175 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~--~~~~fD~v~~~~~~  175 (278)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...++ ++++++++|+.+.+  .+++||+|++..++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            367999999999999999999965 899999999999999999988887 57999999999876  46899999999999


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +++.       +...+++++.++|||||.+++..++...
T Consensus       147 ~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~  178 (285)
T 4htf_A          147 EWVA-------DPRSVLQTLWSVLRPGGVLSLMFYNAHG  178 (285)
T ss_dssp             GGCS-------CHHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred             hccc-------CHHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence            8875       5677889999999999999999876544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.72  E-value=6.8e-17  Score=131.05  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=92.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .++.+|||+|||+|.++..++..+. +++|+|+|+.+++.+++++.    .+++++++|+.+.+..++||+|++..++++
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  118 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVPTSIDTIVSTYAFHH  118 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCCSCCSEEEEESCGGG
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCCCCeEEEEECcchhc
Confidence            3678999999999999999999864 89999999999999999865    368999999998766689999999999887


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      +.     ......+++++.++|||||.+++.++......
T Consensus       119 ~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~  152 (220)
T 3hnr_A          119 LT-----DDEKNVAIAKYSQLLNKGGKIVFADTIFADQD  152 (220)
T ss_dssp             SC-----HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH
T ss_pred             CC-----hHHHHHHHHHHHHhcCCCCEEEEEeccccChH
Confidence            75     22334488999999999999999986654433

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.72  E-value=2.1e-17  Score=130.58  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=92.1

Q ss_pred             chhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-----
Q 023703           89 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----  162 (278)
Q Consensus        89 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-----  162 (278)
                      .++..+....++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++..+++ ++++++++|+.+...     
T Consensus        34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  113 (187)
T 2fhp_A           34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE  113 (187)
T ss_dssp             HHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc
Confidence            33444444457789999999999999998888766999999999999999999988876 369999999987432     


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHH--HhcccCCcEEEEEecCCC
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSV--SKLVAPGGLLVITSCNST  213 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~  213 (278)
                      .++||+|+++.++...        .....++.+  .++|+|||.+++..+...
T Consensus       114 ~~~fD~i~~~~~~~~~--------~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          114 KLQFDLVLLDPPYAKQ--------EIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             TCCEEEEEECCCGGGC--------CHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCCCEEEECCCCCch--------hHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            5789999999886411        223334555  889999999999876654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.72  E-value=6.9e-17  Score=131.10  Aligned_cols=115  Identities=16%  Similarity=0.233  Sum_probs=87.7

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC----ccCCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~fD~v~~~~  173 (278)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.+++.|++++...+++++.++++|+.+.    ..+++||.|+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            45699999999999999999873 347999999999999999999999888999999998874    2468899999863


Q ss_pred             ccceecc-CCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          174 TLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       174 ~~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +..+... +.........+++.+.++|||||.+++.+...+
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~  154 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP  154 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            2111100 000000012578999999999999999886554

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.71  E-value=9.9e-17  Score=129.94  Aligned_cols=108  Identities=19%  Similarity=0.274  Sum_probs=90.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc-----ceEEEEccccCCcc-CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKL-ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~~~~~~d~~~~~~-~~~fD~v~  170 (278)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+++     +++++++|+..... .++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            467799999999999999999974 359999999999999999998877765     69999999976553 47899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +..+++++.     ......+++++.++|||||.++++..
T Consensus       108 ~~~~l~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          108 VIEVIEHLD-----LSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EESCGGGCC-----HHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             eHHHHHcCC-----HHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            999988774     33457888999999999996666543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.71  E-value=3.9e-17  Score=134.55  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=92.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...+..++.++.+|+.+.+. +++||+|++..+++
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            36789999999999999999988656899999999999999999877643468999999987765 45899999998887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.     ......+++++.++|+|||.+++.+..
T Consensus       158 ~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          158 HLT-----DQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hCC-----HHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            764     223568889999999999999997653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.71  E-value=6.5e-17  Score=134.08  Aligned_cols=104  Identities=17%  Similarity=0.234  Sum_probs=91.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++..   ..++.++++|+.+.+. +++||+|++..+++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  119 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNVVLSSLALH  119 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence            3678999999999999999999976689999999999999999876   2479999999988765 58999999999988


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.       +...+++++.++|||||.+++...+
T Consensus       120 ~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          120 YIA-------SFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             GCS-------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhh-------hHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            874       6778889999999999999998654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.71  E-value=5e-17  Score=131.11  Aligned_cols=107  Identities=15%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      +....++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++++      ++.+..+|+...+.+++||+|++..
T Consensus        38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~  110 (211)
T 3e23_A           38 LGELPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAIDAYDAVWAHA  110 (211)
T ss_dssp             HTTSCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCCCSCEEEEEECS
T ss_pred             HHhcCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeeeccCCCCCcEEEEEecC
Confidence            34445778999999999999999999865 8999999999999999876      4667889998877778999999999


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++++.     ..+...+++++.++|||||.+++.....
T Consensus       111 ~l~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  144 (211)
T 3e23_A          111 CLLHVP-----RDELADVLKLIWRALKPGGLFYASYKSG  144 (211)
T ss_dssp             CGGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             chhhcC-----HHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            887764     4467788999999999999999986544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.71  E-value=6e-17  Score=138.59  Aligned_cols=112  Identities=15%  Similarity=0.185  Sum_probs=96.0

Q ss_pred             hhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCcc
Q 023703           91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQ  167 (278)
Q Consensus        91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD  167 (278)
                      +..+....++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|++++...++. +++++++|+.+.+. +++||
T Consensus       109 ~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  187 (312)
T 3vc1_A          109 MDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVT  187 (312)
T ss_dssp             HTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEE
T ss_pred             HHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEe
Confidence            333444567889999999999999999997 64 8999999999999999999988875 59999999998764 58999


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +|++..+++++        +...+++++.++|||||++++.+..
T Consensus       188 ~V~~~~~l~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          188 ASWNNESTMYV--------DLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             EEEEESCGGGS--------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEECCchhhC--------CHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            99999888766        2667789999999999999998743

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.70  E-value=4.4e-17  Score=127.76  Aligned_cols=116  Identities=17%  Similarity=0.153  Sum_probs=92.5

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--cCCCc
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQF  166 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--~~~~f  166 (278)
                      ++..+....++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++++..++. ++.++.+|+.+..  .+++|
T Consensus        22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f  101 (177)
T 2esr_A           22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRF  101 (177)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCE
T ss_pred             HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCC
Confidence            34444434577899999999999999999986569999999999999999999988875 6999999998742  34679


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHH--hcccCCcEEEEEecCCC
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNST  213 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~  213 (278)
                      |+|+++.++..        ......++.+.  ++|+|||.+++......
T Consensus       102 D~i~~~~~~~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          102 DLVFLDPPYAK--------ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             EEEEECCSSHH--------HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CEEEECCCCCc--------chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            99999887632        13344556665  99999999999876654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.70  E-value=4.7e-17  Score=133.85  Aligned_cols=108  Identities=22%  Similarity=0.350  Sum_probs=92.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      ..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++..   ..++.++++|+.+.+. +++||+|++..++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  126 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSLPFENEQFEAIMAINSL  126 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence            34678999999999999999999975 89999999999999998752   2469999999998764 6889999999998


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      +++.       +...+++++.++|+|||.+++...+....
T Consensus       127 ~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~  159 (242)
T 3l8d_A          127 EWTE-------EPLRALNEIKRVLKSDGYACIAILGPTAK  159 (242)
T ss_dssp             TSSS-------CHHHHHHHHHHHEEEEEEEEEEEECTTCG
T ss_pred             hhcc-------CHHHHHHHHHHHhCCCeEEEEEEcCCcch
Confidence            8774       66678899999999999999998665543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.70  E-value=1.6e-16  Score=128.93  Aligned_cols=107  Identities=19%  Similarity=0.258  Sum_probs=89.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCc-----ceEEEEccccCCcc-CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKL-ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~~~~~~d~~~~~~-~~~fD~v~  170 (278)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++...+++     +++++++|+...+. .++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            4677999999999999999999853 58999999999999999998776654     69999999976653 57899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +..+++++.     ......+++++.++|||||.++...
T Consensus       108 ~~~~l~~~~-----~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          108 VIEVIEHLD-----ENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EESCGGGCC-----HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EHHHHHhCC-----HHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            999988774     3344688899999999999665543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.70  E-value=4.4e-17  Score=132.07  Aligned_cols=109  Identities=21%  Similarity=0.348  Sum_probs=95.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      ..++.+|||+|||+|.++..++..+  ..+|+|+|+|+.+++.+++++...+++++.+..+|+.+.+. +++||+|++..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence            4567899999999999999999874  34899999999999999999988887789999999988764 57899999999


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++++.       +...+++++.++|+|||.+++.+...
T Consensus       115 ~l~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          115 TFHELS-------EPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             CGGGCS-------SHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             hhhhcC-------CHHHHHHHHHHHhCCCeEEEEEEecc
Confidence            988775       56788899999999999999987543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.69  E-value=2.6e-16  Score=126.40  Aligned_cols=105  Identities=18%  Similarity=0.164  Sum_probs=89.2

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCC-ccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-KLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~-~~~~~fD~v~~~~  173 (278)
                      ...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|+++++..+++ +++++++|+.+. ....+||+|++..
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~  130 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG  130 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence            34577899999999999999999985 58999999999999999999999887 799999999873 3346899999876


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .+           ... +++++.++|||||++++......
T Consensus       131 ~~-----------~~~-~l~~~~~~LkpgG~lv~~~~~~~  158 (204)
T 3njr_A          131 GG-----------SQA-LYDRLWEWLAPGTRIVANAVTLE  158 (204)
T ss_dssp             CC-----------CHH-HHHHHHHHSCTTCEEEEEECSHH
T ss_pred             cc-----------cHH-HHHHHHHhcCCCcEEEEEecCcc
Confidence            43           233 77999999999999999887643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.69  E-value=9.5e-17  Score=134.80  Aligned_cols=108  Identities=21%  Similarity=0.383  Sum_probs=95.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ..++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.+++++...+++++.++.+|+.+.+. +++||+|++..+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            4578899999999999999999873 35899999999999999999998888789999999998764 588999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.       +...+++++.++|||||.+++.++.
T Consensus       115 l~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          115 LEHLQ-------SPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             GGGCS-------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhcC-------CHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            98875       5567889999999999999998643

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.69  E-value=4.6e-16  Score=125.82  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=87.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~  174 (278)
                      ++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.|++++...+++++.++++|+.+..   .+++||.|+++.+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            4679999999999999999987 33589999999999999999999888888999999998753   2578999886432


Q ss_pred             cceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ..+.. .|.........+++++.++|||||.+++.+.+.
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~  156 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  156 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            11110 000000113567899999999999999987554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.69  E-value=1.1e-16  Score=135.85  Aligned_cols=108  Identities=14%  Similarity=0.272  Sum_probs=95.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|++++...++. ++.++++|+.+.+. +++||+|++.
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  157 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ  157 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence            4567889999999999999999987 65 8999999999999999998877764 59999999998764 5789999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .+++++.       +...+++++.++|||||.+++.++.
T Consensus       158 ~~l~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          158 DAFLHSP-------DKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             SCGGGCS-------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhhcC-------CHHHHHHHHHHHcCCCeEEEEEEec
Confidence            9988875       5678889999999999999998753

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.69  E-value=2.2e-16  Score=132.21  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=87.7

Q ss_pred             ccccCCCCeEEEEecCCCHHH-HHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC
Q 023703           94 NDKYLSSWSVLDIGTGNGLLL-QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      +.+..++.+|||||||+|.++ ..+++....+|+|+|+|+.+++.|+++++..++.+++++++|+.+.+ +++||+|++.
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d~~FDvV~~~  195 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-GLEFDVLMVA  195 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-GCCCSEEEEC
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-CCCcCEEEEC
Confidence            356688999999999999765 44555422489999999999999999999888877999999998865 6889999975


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..   .       .+...+++++.++|||||++++...
T Consensus       196 a~---~-------~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          196 AL---A-------EPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             TT---C-------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CC---c-------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            43   1       1566788999999999999999864

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.69  E-value=1.6e-16  Score=133.10  Aligned_cols=108  Identities=24%  Similarity=0.343  Sum_probs=93.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.+++++...++. ++.++.+|+.+.+. +++||+|++..+
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  138 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES  138 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence            4577899999999999999998852348999999999999999999888765 59999999988765 578999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.       +...+++++.++|||||.+++.+..
T Consensus       139 l~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          139 LHHMP-------DRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             TTTSS-------CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhCC-------CHHHHHHHHHHHcCCCeEEEEEEee
Confidence            88775       5578889999999999999998743

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.69  E-value=3.1e-16  Score=125.53  Aligned_cols=112  Identities=18%  Similarity=0.279  Sum_probs=92.5

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEe
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMD  171 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~  171 (278)
                      .+....++ +|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+. ++.+.++|+.+.+. +++||+|++
T Consensus        24 ~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           24 VANQIPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             HHHHSCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             HHHhCCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCCccEEEE
Confidence            33444566 999999999999999999875 899999999999999999887765 79999999988764 578999998


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ..  .++     .......+++++.++|+|||.+++...+...
T Consensus       101 ~~--~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  136 (202)
T 2kw5_A          101 IF--CHL-----PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ  136 (202)
T ss_dssp             EC--CCC-----CHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred             Eh--hcC-----CHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence            42  122     3446778889999999999999999876554

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.69  E-value=1.9e-16  Score=128.00  Aligned_cols=106  Identities=20%  Similarity=0.316  Sum_probs=92.9

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCccEEEeCCccceec
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~  179 (278)
                      +|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...++. +++++++|+.+.+. +++||+|+++.+++++.
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~  125 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWE  125 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCS
T ss_pred             EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhcc
Confidence            99999999999999999873348999999999999999999888764 69999999998764 57899999999988774


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                             +...+++++.++|+|||.+++.......
T Consensus       126 -------~~~~~l~~~~~~L~pgG~l~~~~~~~~~  153 (219)
T 3dlc_A          126 -------DVATAFREIYRILKSGGKTYIGGGFGNK  153 (219)
T ss_dssp             -------CHHHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred             -------CHHHHHHHHHHhCCCCCEEEEEeccCcH
Confidence                   6677889999999999999998765554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.68  E-value=3.1e-18  Score=141.11  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=89.9

Q ss_pred             hhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEE
Q 023703           92 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVM  170 (278)
Q Consensus        92 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~  170 (278)
                      ..+....++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++ .+++++++|+.+...+++||+|+
T Consensus        71 ~~~~~~~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~  149 (241)
T 3gdh_A           71 GRVSQSFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVF  149 (241)
T ss_dssp             HHHHHHSCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEE
T ss_pred             HHhhhccCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEE
Confidence            333333478899999999999999999997 5999999999999999999999987 47999999998877778999999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ++.++.+..       .....+.++.++|+|||.+++.
T Consensus       150 ~~~~~~~~~-------~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          150 LSPPWGGPD-------YATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             ECCCCSSGG-------GGGSSSBCTTTSCSSCHHHHHH
T ss_pred             ECCCcCCcc-------hhhhHHHHHHhhcCCcceeHHH
Confidence            999887653       1112335788999999986554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.68  E-value=3.8e-16  Score=127.62  Aligned_cols=115  Identities=16%  Similarity=0.179  Sum_probs=91.2

Q ss_pred             cCCCCeEEEEecC-CCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTG-NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~  173 (278)
                      ..++.+|||+||| +|.++..++.....+|+|+|+|+.+++.|++++..+++ +++++++|+....  .+++||+|++++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEECC
Confidence            4578899999999 99999999988324899999999999999999999987 8999999974432  358899999998


Q ss_pred             ccceecc------------CCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGL------------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++....-            ...+......+++++.++|||||.+++..+..
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            8754321            01122234778899999999999999976654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.68  E-value=2.5e-16  Score=128.22  Aligned_cols=108  Identities=26%  Similarity=0.410  Sum_probs=91.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..++..+. +++++|+|+.+++.|++++...+ .+++++++|+.+.+. +++||+|+++.+++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            3477999999999999999999875 89999999999999999988776 579999999988664 57899999988833


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ...     ..+...+++++.++|+|||.+++..++.
T Consensus       115 ~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  145 (227)
T 1ve3_A          115 HFE-----PLELNQVFKEVRRVLKPSGKFIMYFTDL  145 (227)
T ss_dssp             GCC-----HHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hCC-----HHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence            221     2366788899999999999999987753

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.68  E-value=1.6e-16  Score=130.73  Aligned_cols=108  Identities=19%  Similarity=0.260  Sum_probs=94.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC-ccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~-~~~~  177 (278)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++...+. ++.++++|+.+.+.+++||+|++.. ++++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCccCCceEEEEcCccccc
Confidence            667999999999999999999864 899999999999999999887765 7999999998876668999999998 8877


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +.    ...+...+++++.++|+|||.+++..++.
T Consensus       115 ~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          115 II----DSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CC----SHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             cC----CHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            62    23477888999999999999999976653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.68  E-value=1.3e-16  Score=133.04  Aligned_cols=108  Identities=24%  Similarity=0.392  Sum_probs=93.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..++.. +. +|+|+|+|+.+++.|+++....  .+++++++|+.+.+. +++||+|++..+
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~  129 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPENNFDLIYSRDA  129 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTTCEEEEEEESC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCCcEEEEeHHHH
Confidence            457789999999999999999997 54 8999999999999999987655  579999999998765 689999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++++.     ..+...+++++.++|||||.+++.++..
T Consensus       130 l~~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          130 ILALS-----LENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             GGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHhcC-----hHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            88872     3478889999999999999999987533

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.68  E-value=3.9e-16  Score=125.23  Aligned_cols=107  Identities=11%  Similarity=0.071  Sum_probs=91.2

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      ...++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++...++++++++.+|+.+... .++||+|++..
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence            44678899999999999999999984 35899999999999999999998888789999999976543 37899999887


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++.          ....+++++.++|+|||++++.....
T Consensus       117 ~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~  145 (204)
T 3e05_A          117 SGG----------MLEEIIDAVDRRLKSEGVIVLNAVTL  145 (204)
T ss_dssp             CTT----------CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred             CCc----------CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            653          45567799999999999999987654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.68  E-value=1.3e-16  Score=127.77  Aligned_cols=103  Identities=18%  Similarity=0.281  Sum_probs=89.5

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcccee
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAI  178 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~  178 (278)
                      +.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++.     +++.++++|+.+.+. +++||+|++..+++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----CCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            67999999999999999999975 8999999999999999873     478999999988764 5889999999888766


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .     ..+...+++++.++|+|||.+++..+...
T Consensus       116 ~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          116 G-----PGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             C-----TTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             C-----HHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            3     34667888999999999999999886554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.68  E-value=2e-16  Score=126.98  Aligned_cols=115  Identities=17%  Similarity=0.295  Sum_probs=94.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.|++++...++.++++.++|+.+. .+++||+|+++.+++
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-VDGKFDLIVANILAE  136 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-CCSCEEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-CCCCceEEEECCcHH
Confidence            3567899999999999999999987669999999999999999999988876799999999875 358899999987664


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHHh
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVS  222 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~  222 (278)
                                ....+++++.++|+|||.+++...... ...+...+.
T Consensus       137 ----------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~  173 (205)
T 3grz_A          137 ----------ILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALA  173 (205)
T ss_dssp             ----------HHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHH
Confidence                      345677999999999999999864443 334444443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=134.88  Aligned_cols=114  Identities=18%  Similarity=0.257  Sum_probs=89.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-----------------------------
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-----------------------------  147 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------------------------  147 (278)
                      .++.+|||||||+|.++..++.. +..+|+|+|+|+.+++.|++++...+.                             
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            46789999999999999999987 446999999999999999998765431                             


Q ss_pred             -----------------------------cceEEEEccccCCc------cCCCccEEEeCCccceeccCCCChhhHHHHH
Q 023703          148 -----------------------------SCIKFLVDDVLDTK------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYW  192 (278)
Q Consensus       148 -----------------------------~~~~~~~~d~~~~~------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l  192 (278)
                                                   .+++|.++|+....      ..++||+|++..++.++.+.. +......++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~-~~~~~~~~l  203 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNW-GDEGLKRMF  203 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHH-HHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcC-CHHHHHHHH
Confidence                                         26999999998654      357899999999886653110 123667888


Q ss_pred             HHHHhcccCCcEEEEEecCC
Q 023703          193 DSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       193 ~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++.++|+|||+|++...++
T Consensus       204 ~~~~~~LkpGG~lil~~~~~  223 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEPQPW  223 (292)
T ss_dssp             HHHHHHEEEEEEEEEECCCH
T ss_pred             HHHHHHhCCCcEEEEecCCc
Confidence            99999999999999986543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.68  E-value=1.3e-16  Score=135.71  Aligned_cols=110  Identities=21%  Similarity=0.239  Sum_probs=84.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc------ceEEEEccccCC---------ccC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------CIKFLVDDVLDT---------KLE  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~------~~~~~~~d~~~~---------~~~  163 (278)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.+++.|++++...+..      ++++.+.|+...         .++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            46799999999998777666665458999999999999999998765432      267888887321         135


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++||+|+|..+++++. +..   +...+++++.++|||||.+++.+++.
T Consensus       128 ~~FD~V~~~~~lhy~~-~~~---~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSF-HPR---HYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             SCEEEEEEESCGGGTC-STT---THHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCeeEEEECchHHHhC-CHH---HHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            7899999987765432 222   34688899999999999999998764

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=2.4e-16  Score=132.66  Aligned_cols=104  Identities=19%  Similarity=0.314  Sum_probs=91.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++++.     +++.+.++|+.+.+.+++||+|++..+++
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  128 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVDKPLDAVFSNAMLH  128 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcCCCcCEEEEcchhh
Confidence            3567899999999999999999965 48999999999999999875     46889999999887778999999999988


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++.       +...+++++.++|||||.+++..+...
T Consensus       129 ~~~-------d~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          129 WVK-------EPEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             GCS-------CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             hCc-------CHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            775       667788999999999999999876653

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.68  E-value=1.6e-16  Score=127.75  Aligned_cols=112  Identities=18%  Similarity=0.298  Sum_probs=92.1

Q ss_pred             cccCCCCeEEEEecCCCHHH-HHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703           95 DKYLSSWSVLDIGTGNGLLL-QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ....++.+|||+|||+|..+ ..++..+. +|+|+|+|+.+++.|++++...+ .++.++++|+.+.+. +++||+|++.
T Consensus        19 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~   96 (209)
T 2p8j_A           19 NESNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFKDESMSFVYSY   96 (209)
T ss_dssp             HHSSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSCTTCEEEEEEC
T ss_pred             hccCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCCCCceeEEEEc
Confidence            34456789999999999984 44555554 89999999999999999987766 468999999988764 5789999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .+++++.     ..+...+++++.++|||||.+++...+..
T Consensus        97 ~~l~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  132 (209)
T 2p8j_A           97 GTIFHMR-----KNDVKEAIDEIKRVLKPGGLACINFLTTK  132 (209)
T ss_dssp             SCGGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             ChHHhCC-----HHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            8887662     34778889999999999999999876543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.67  E-value=1.3e-16  Score=135.65  Aligned_cols=110  Identities=19%  Similarity=0.294  Sum_probs=92.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC---cceEEEEccccCCccCCCccEEEeC-Cc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKLERQFQLVMDK-GT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~~fD~v~~~-~~  174 (278)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...++   .+++++++|+.+.+.+++||+|++. .+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  160 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGS  160 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcc
Confidence            345999999999999999999975 899999999999999999987763   3699999999998778899998864 33


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +++     .+..+...+++++.++|||||.+++..++...
T Consensus       161 ~~~-----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  195 (299)
T 3g2m_A          161 INE-----LDEADRRGLYASVREHLEPGGKFLLSLAMSEA  195 (299)
T ss_dssp             HTT-----SCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred             ccc-----CCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence            433     23456788899999999999999999877654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.67  E-value=7e-17  Score=129.58  Aligned_cols=105  Identities=10%  Similarity=-0.034  Sum_probs=86.2

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~  176 (278)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++++.+++.+++++++|+.+..  ..++||+|+++++|.
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            678999999999999999888876699999999999999999999988778999999987732  346899999988753


Q ss_pred             eeccCCCChhhHHHHHHHHHh--cccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSK--LVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~  211 (278)
                       .       .....+++.+.+  +|+|||++++....
T Consensus       134 -~-------~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          134 -R-------GLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             -T-------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             -C-------CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence             1       133445566654  69999999988754

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.67  E-value=2e-16  Score=134.92  Aligned_cols=111  Identities=19%  Similarity=0.199  Sum_probs=94.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHh--hCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELS--KQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~--~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ..++.+|||+|||+|.++..++  ..+..+|+|+|+|+.+++.|++++...++.+ ++++++|+.+.+.+++||+|+++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            4678899999999999999995  3334589999999999999999998888754 999999999887668999999998


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++++.    ++.....+++++.++|||||.+++....
T Consensus       196 ~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          196 LNIYEP----DDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             SGGGCC----CHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hhhhcC----CHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            887653    3444456889999999999999998744

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.67  E-value=2.7e-16  Score=126.66  Aligned_cols=102  Identities=17%  Similarity=0.171  Sum_probs=90.2

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...+++++++..+|+.+... .++||+|+++.+
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~  152 (210)
T 3lbf_A           74 ELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA  152 (210)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence            44678899999999999999999985 5899999999999999999998888789999999987543 578999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.             +.+.++|||||++++..++
T Consensus       153 ~~~~~-------------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          153 PPEIP-------------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CSSCC-------------THHHHTEEEEEEEEEEECS
T ss_pred             hhhhh-------------HHHHHhcccCcEEEEEEcC
Confidence            87765             4689999999999998876

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.67  E-value=3.7e-16  Score=127.67  Aligned_cols=111  Identities=25%  Similarity=0.479  Sum_probs=94.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-----ceEEEEccccCCcc-CCCccEEEe
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKL-ERQFQLVMD  171 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~~~~~~d~~~~~~-~~~fD~v~~  171 (278)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++++...++.     ++.+..+|+...+. +++||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            4678999999999999999999965 8999999999999999998877652     58999999988764 678999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ..+++++.    ++.....+++++.++|+|||.+++.++...
T Consensus       108 ~~~l~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (235)
T 3sm3_A          108 QAFLTSVP----DPKERSRIIKEVFRVLKPGAYLYLVEFGQN  145 (235)
T ss_dssp             ESCGGGCC----CHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             cchhhcCC----CHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence            98887664    334455888999999999999999876543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.67  E-value=1.1e-16  Score=131.69  Aligned_cols=106  Identities=23%  Similarity=0.336  Sum_probs=89.2

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--c-cCCCccEEEe
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--K-LERQFQLVMD  171 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--~-~~~~fD~v~~  171 (278)
                      ....++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++        +.++.+|+.+.  + .+++||+|++
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEE
Confidence            3445778999999999999999999875 799999999999999864        67888998774  2 3588999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ..+++++.     ..+...+++++.++|||||.+++.+++...
T Consensus       108 ~~~l~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  145 (240)
T 3dli_A          108 SHFVEHLD-----PERLFELLSLCYSKMKYSSYIVIESPNPTS  145 (240)
T ss_dssp             ESCGGGSC-----GGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred             CCchhhCC-----cHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence            99988774     335578889999999999999999877654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.67  E-value=7.7e-17  Score=125.37  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~~  173 (278)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...++ +++++++|+.+...     .++||+|++++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            678999999999999999999976 599999999999999999988877 89999999987421     24799999998


Q ss_pred             ccceeccCCCChhhHHHHHHHHH--hcccCCcEEEEEecCCCh
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~  214 (278)
                      ++.  .       ....+++.+.  ++|+|||.+++.......
T Consensus       119 ~~~--~-------~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          119 PYA--M-------DLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             CTT--S-------CTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CCc--h-------hHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            874  1       1112334555  999999999998876544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=4.5e-16  Score=129.28  Aligned_cols=104  Identities=17%  Similarity=0.270  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.++++.     +++.++++|+.+.+.+++||+|+++.+++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  106 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADLATWKPAQKADLLYANAVFQ  106 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcCccCCcCEEEEeCchh
Confidence            46779999999999999999987 2348999999999999999872     47899999998877668899999999988


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++.       +...+++++.++|||||.+++..++..
T Consensus       107 ~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~  136 (259)
T 2p35_A          107 WVP-------DHLAVLSQLMDQLESGGVLAVQMPDNL  136 (259)
T ss_dssp             GST-------THHHHHHHHGGGEEEEEEEEEEEECCT
T ss_pred             hCC-------CHHHHHHHHHHhcCCCeEEEEEeCCCC
Confidence            775       677888999999999999999886543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.67  E-value=5e-16  Score=128.56  Aligned_cols=107  Identities=23%  Similarity=0.405  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc-cc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT-LD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~-~~  176 (278)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+. ++.++++|+.+.+.+++||+|++... +.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~~~~~  117 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccCCCccEEEEcCCchh
Confidence            3567999999999999999999875 899999999999999999987775 79999999998776788999998633 22


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++     .......+++++.++|+|||.+++..++
T Consensus       118 ~~-----~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          118 YF-----DEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cC-----CHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            22     2346778889999999999999987655

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.67  E-value=2.6e-16  Score=129.47  Aligned_cols=105  Identities=21%  Similarity=0.351  Sum_probs=90.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++...   .++.++++|+.+.+. +++||+|++..++
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  117 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLAL  117 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEeccc
Confidence            346789999999999999999998755899999999999999987643   268999999988664 5789999999888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++.       +...+++++.++|+|||.+++..++
T Consensus       118 ~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          118 HYVE-------DVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             GGCS-------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccc-------hHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            7774       5677889999999999999998764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.67  E-value=3.3e-16  Score=130.34  Aligned_cols=104  Identities=13%  Similarity=0.143  Sum_probs=90.2

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++ ..+.+++.+.++|+.+.+. +++||+|++..+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  113 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHL  113 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence            34567899999999999999999986 48999999999999999988 3334579999999988764 578999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ++++.       +...+++++.++|||||.+++.
T Consensus       114 l~~~~-------~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          114 WHLVP-------DWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GGGCT-------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcC-------CHHHHHHHHHHHCCCCcEEEEE
Confidence            88775       5677889999999999999987

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.67  E-value=6.7e-17  Score=136.88  Aligned_cols=114  Identities=22%  Similarity=0.257  Sum_probs=93.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC----cceEEEEccccCCc----cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----SCIKFLVDDVLDTK----LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~----~~~~~~~~d~~~~~----~~~~fD~v  169 (278)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++....+.    .++.+..+|+.+.+    .+++||+|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            4667999999999999999999976 899999999999999988644321    35889999998765    46899999


Q ss_pred             EeC-CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          170 MDK-GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       170 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++. .+++++.-...+......+++++.++|||||.+++..++.
T Consensus       135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence            998 7888775111123457889999999999999999998764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.67  E-value=5.9e-16  Score=132.70  Aligned_cols=110  Identities=13%  Similarity=0.214  Sum_probs=95.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|++++...++. ++.+..+|+.+.+  ++||+|++..+
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~  164 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEA  164 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESC
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeCh
Confidence            457789999999999999999987 75 8999999999999999999887764 4999999997763  78999999998


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++++.     ..+...+++++.++|||||.+++.++....
T Consensus       165 l~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          165 FEHFG-----HENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             GGGTC-----GGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             HHhcC-----HHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            88773     236778889999999999999998866544

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.67  E-value=3.3e-16  Score=132.70  Aligned_cols=112  Identities=21%  Similarity=0.274  Sum_probs=94.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc--CCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL--ERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~--~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+. .++.++++|+.+.+.  +++||+|++..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            46789999999999999998888766899999999999999999987765 358999999998654  578999999888


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++++.   ....+...+++++.++|||||.+++..++.
T Consensus       143 l~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          143 FHYAF---STSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             hhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            76531   223467788999999999999999998764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.67  E-value=3.5e-16  Score=130.44  Aligned_cols=103  Identities=21%  Similarity=0.298  Sum_probs=89.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC-ccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~-~~~  176 (278)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++     .++.++++|+.+.+.+++||+|++.. +++
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~  122 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN-----PDAVLHHGDMRDFSLGRRFSAVTCMFSSIG  122 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTCCCSCCEEEEEECTTGGG
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChHHCCccCCcCEEEEcCchhh
Confidence            3567999999999999999999974 8999999999999999875     36899999999887788999999987 887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++.    .+.+...+++++.++|||||.+++...
T Consensus       123 ~~~----~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          123 HLA----GQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             GSC----HHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             hcC----CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            763    234667889999999999999999754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.67  E-value=4e-16  Score=131.77  Aligned_cols=110  Identities=14%  Similarity=0.292  Sum_probs=93.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.+++++...++. ++.+..+|+.+.+  ++||+|++..+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~  138 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGA  138 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESC
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCc
Confidence            457789999999999999999954 65 8999999999999999999877764 6999999997654  88999999998


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++++.     ..+...+++++.++|||||.+++.++....
T Consensus       139 l~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  173 (287)
T 1kpg_A          139 FEHFG-----HERYDAFFSLAHRLLPADGVMLLHTITGLH  173 (287)
T ss_dssp             GGGTC-----TTTHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred             hhhcC-----hHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence            88773     236677889999999999999998765443

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=3.7e-16  Score=130.19  Aligned_cols=127  Identities=18%  Similarity=0.201  Sum_probs=97.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhh---CCCc-ceEEEEccccCCc--------c
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANR---DGFS-CIKFLVDDVLDTK--------L  162 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~---~~~~-~~~~~~~d~~~~~--------~  162 (278)
                      ...++.+|||+|||+|.++..++.+. ..+|+++|+++.+++.|++++..   +++. ++.++++|+.+..        .
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            34567799999999999999999884 35899999999999999999988   7776 4999999999872        2


Q ss_pred             CCCccEEEeCCccceec-----------cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          163 ERQFQLVMDKGTLDAIG-----------LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      +++||+|+++++|....           ...........+++.+.++|||||.+++........++...+.
T Consensus       113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~  183 (260)
T 2ozv_A          113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACG  183 (260)
T ss_dssp             TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHT
T ss_pred             CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHH
Confidence            57899999998875431           0001112356788999999999999999877665555555544

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.66  E-value=6.4e-17  Score=135.10  Aligned_cols=110  Identities=19%  Similarity=0.216  Sum_probs=87.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC--C---------------------------c
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG--F---------------------------S  148 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~--~---------------------------~  148 (278)
                      .++.+|||||||+|.++..++..++.+|+|+|+|+.+++.|+++++...  +                           .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            4677999999999998888877776689999999999999998765431  0                           1


Q ss_pred             ceE-EEEccccCCcc-----CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          149 CIK-FLVDDVLDTKL-----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       149 ~~~-~~~~d~~~~~~-----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++. ++++|+.+..+     .++||+|++..+++++..   ...+...+++++.++|||||.|++...
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~---~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC---SLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS---SHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcC---CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            243 88999987421     468999999999887631   133667788999999999999999864

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.66  E-value=3.1e-17  Score=132.28  Aligned_cols=124  Identities=22%  Similarity=0.259  Sum_probs=76.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-----CCccEEEe
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-----RQFQLVMD  171 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-----~~fD~v~~  171 (278)
                      .++.+|||+|||+|.++..++..+ ..+++|+|+|+.+++.|++++...+. +++++++|+.+...+     ++||+|++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            577899999999999999999984 23899999999999999999988876 789999999874334     89999999


Q ss_pred             CCccceecc-C------------------CCChhhHHHHHHHHHhcccCCcE-EEEEecCCChHHHHHHHh
Q 023703          172 KGTLDAIGL-H------------------PDGPLKRIMYWDSVSKLVAPGGL-LVITSCNSTKDELVHEVS  222 (278)
Q Consensus       172 ~~~~~~~~~-~------------------~~~~~~~~~~l~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~~  222 (278)
                      ++++..... +                  ..+......+++++.++|||||+ +++.............+.
T Consensus       108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~  178 (215)
T 4dzr_A          108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFA  178 (215)
T ss_dssp             CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTG
T ss_pred             CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHH
Confidence            988743220 0                  01111226788999999999999 566555555555555444

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.66  E-value=2.6e-16  Score=132.76  Aligned_cols=160  Identities=18%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             cCcchhhHHh---hhhcccccccccCcccccccccccchhhhc-cc--cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEE
Q 023703           55 FGADVMDVVA---SWTKSLCISISQGHMLNHVEDLKSEPVEEN-DK--YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGV  128 (278)
Q Consensus        55 ~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~  128 (278)
                      -+.|..++++   +|...+  .+..+.+.++++ + ..++..+ ..  ..++.+|||+|||+|.++..++..+..+|+|+
T Consensus        77 ~~~p~~yi~g~~~f~~~~~--~v~~~~lipr~~-t-e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~v  152 (284)
T 1nv8_A           77 SGYPLHYILGEKEFMGLSF--LVEEGVFVPRPE-T-EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFAT  152 (284)
T ss_dssp             TTCCHHHHHTEEEETTEEE--ECCTTSCCCCTT-H-HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEE
T ss_pred             CCCCCeEEeeeeEECCeEE--EeCCCceecChh-H-HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEE
Confidence            4456566555   344433  456666665542 1 1222222 11  12567999999999999999998733589999


Q ss_pred             eCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCc---cEEEeCCccceecc-------CCCC-----hhhHHHHH
Q 023703          129 DYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQF---QLVMDKGTLDAIGL-------HPDG-----PLKRIMYW  192 (278)
Q Consensus       129 D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~f---D~v~~~~~~~~~~~-------~~~~-----~~~~~~~l  192 (278)
                      |+|+.+++.|++|+..+++.+ ++++++|+.+.. .++|   |+|++++++....-       +.+.     ..+...++
T Consensus       153 Dis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~  231 (284)
T 1nv8_A          153 DVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFY  231 (284)
T ss_dssp             ESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHH
T ss_pred             ECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHH
Confidence            999999999999999998865 999999998743 3578   99999988743210       1100     01122677


Q ss_pred             HHHH-hcccCCcEEEEEecCCChHHHHH
Q 023703          193 DSVS-KLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       193 ~~~~-~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      +++. +.|+|||.+++.......+....
T Consensus       232 ~~i~~~~l~pgG~l~~e~~~~q~~~v~~  259 (284)
T 1nv8_A          232 REFFGRYDTSGKIVLMEIGEDQVEELKK  259 (284)
T ss_dssp             HHHHHHCCCTTCEEEEECCTTCHHHHTT
T ss_pred             HHHHHhcCCCCCEEEEEECchHHHHHHH
Confidence            9999 99999999999876655444333

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.66  E-value=1e-15  Score=126.87  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=84.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcccc-CCccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL-DTKLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++.... -...+...+.. ....+++||+|+++.+
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~-v~~~~~~~~~~~~~~~~~~fD~Vv~~~~  119 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRC-VTIDLLDITAEIPKELAGHFDFVLNDRL  119 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSC-CEEEECCTTSCCCGGGTTCCSEEEEESC
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcc-ceeeeeecccccccccCCCccEEEEhhh
Confidence            345778999999999999999999975 89999999999999999876542 12333222220 1123578999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++++.     ..+...+++++.++| |||+++++......
T Consensus       120 l~~~~-----~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~  153 (261)
T 3iv6_A          120 INRFT-----TEEARRACLGMLSLV-GSGTVRASVKLGFY  153 (261)
T ss_dssp             GGGSC-----HHHHHHHHHHHHHHH-TTSEEEEEEEBSCC
T ss_pred             hHhCC-----HHHHHHHHHHHHHhC-cCcEEEEEeccCcc
Confidence            87663     346667889999999 99999998755433

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.66  E-value=3e-16  Score=129.98  Aligned_cols=106  Identities=13%  Similarity=0.210  Sum_probs=91.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...  .++.++++|+.+.+. +++||+|++..+++
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  169 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence            467899999999999999999886557999999999999999988655  479999999988764 57899999998887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++.     ..+...+++++.++|||||.+++.+.
T Consensus       170 ~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          170 YLT-----DADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hCC-----HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            773     23678889999999999999999875

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.66  E-value=1.4e-16  Score=134.17  Aligned_cols=105  Identities=10%  Similarity=0.024  Sum_probs=90.5

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++++.+++.+ ++++++|+.+....++||+|+++.+.
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~  202 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence            35688999999999999999999875479999999999999999999998875 99999999988777889999987653


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .           ...++..+.++|+|||.+++.++..
T Consensus       203 ~-----------~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          203 R-----------THEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             S-----------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             h-----------HHHHHHHHHHHCCCCeEEEEEEeec
Confidence            2           2345688999999999999987653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.66  E-value=6.6e-16  Score=120.90  Aligned_cols=107  Identities=20%  Similarity=0.148  Sum_probs=87.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccC--CCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE--RQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~--~~fD~v~~~  172 (278)
                      ..++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|++++...+++ ++ ++.+|..+....  ++||+|++.
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence            356779999999999999999988 3358999999999999999999988876 68 888888654333  789999998


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      .++++           ..+++++.++|+|||.+++........
T Consensus       102 ~~~~~-----------~~~l~~~~~~L~~gG~l~~~~~~~~~~  133 (178)
T 3hm2_A          102 GGLTA-----------PGVFAAAWKRLPVGGRLVANAVTVESE  133 (178)
T ss_dssp             C-TTC-----------TTHHHHHHHTCCTTCEEEEEECSHHHH
T ss_pred             CcccH-----------HHHHHHHHHhcCCCCEEEEEeeccccH
Confidence            77643           345589999999999999988765443

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.66  E-value=4.1e-16  Score=124.35  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=91.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc--cCCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~--~~~~fD~v~~  171 (278)
                      ..++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|++++...++ ++++++++|+.+..  .+++||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            357789999999999999999987  334899999999999999999999887 57999999988764  3578999999


Q ss_pred             CCccceecc----CCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          172 KGTLDAIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       172 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +.++  ++.    ..........+++++.++|||||++++....
T Consensus       100 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A          100 NLGY--LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EESB--CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCc--ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            8765  110    0122335567889999999999999998754

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.66  E-value=2.9e-16  Score=129.94  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=91.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEEEeC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDK  172 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~  172 (278)
                      .++.+|||||||+|..+..++.. +..+|+++|+|+.+++.|++++...++.+++++++|+.+...    .++||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            46789999999999999999876 445899999999999999999999998889999999987643    3789999986


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  217 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  217 (278)
                      .+.           ....+++.+.++|||||++++.......++.
T Consensus       159 a~~-----------~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~  192 (249)
T 3g89_A          159 AVA-----------PLCVLSELLLPFLEVGGAAVAMKGPRVEEEL  192 (249)
T ss_dssp             SSC-----------CHHHHHHHHGGGEEEEEEEEEEECSCCHHHH
T ss_pred             CcC-----------CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHH
Confidence            432           4456779999999999999988776655544

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.66  E-value=6.9e-16  Score=123.92  Aligned_cols=108  Identities=18%  Similarity=0.130  Sum_probs=91.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||+|.++..++.. +..+++++|+|+.+++.+++++...+++++.+.++|+.+....++||+|+++..   
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~---  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF---  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence            4779999999999999999986 345899999999999999999998888779999999998766678999998642   


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  217 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  217 (278)
                              .....+++.+.++|+|||.+++.......+++
T Consensus       142 --------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  173 (207)
T 1jsx_A          142 --------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEI  173 (207)
T ss_dssp             --------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHH
T ss_pred             --------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHH
Confidence                    14557789999999999999998766555443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.66  E-value=6.7e-16  Score=126.94  Aligned_cols=108  Identities=24%  Similarity=0.354  Sum_probs=92.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC-ccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~-~~~  176 (278)
                      .++.+|||+|||+|.++..+++.  .+|+|+|+|+.+++.|++++...+ .++.++++|+.+.+.+++||+|++.. +++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            45679999999999999999988  489999999999999999988776 47999999998876678999999975 776


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++.    .......+++++.++|+|||.+++..++.
T Consensus       109 ~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A          109 YLQ----TEADVKQTFDSAARLLTDGGKLLFDVHSP  140 (243)
T ss_dssp             GCC----SHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hcC----CHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence            652    34467788899999999999999876653

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.65  E-value=2.3e-16  Score=129.62  Aligned_cols=109  Identities=13%  Similarity=0.118  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~  174 (278)
                      .++.+|||||||+|..+..+++.+..+++++|+|+.+++.|+++....+. ++.++.+|+.+..   .+++||.|+....
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccccccCCceEEEeee
Confidence            46789999999999999999988546899999999999999999988763 6889999886542   3578999986544


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .......  ...+...+++++.|+|||||+|++.+
T Consensus       138 ~~~~~~~--~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          138 PLSEETW--HTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCBGGGT--TTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ecccchh--hhcchhhhhhhhhheeCCCCEEEEEe
Confidence            3222111  12366778899999999999998864

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.65  E-value=2.1e-16  Score=129.83  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=88.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--cc-CCCccEEEe-CC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KL-ERQFQLVMD-KG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--~~-~~~fD~v~~-~~  173 (278)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....+ .++.++++|+.+.  +. +++||+|++ ..
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4678999999999999999988765589999999999999999988776 5799999999876  43 578999998 33


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .. ..  +.........+++++.++|||||++++.+..
T Consensus       138 ~~-~~--~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          138 PL-SE--ETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CC-BG--GGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             cc-ch--hhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            32 11  1112334557789999999999999987543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.65  E-value=5.8e-16  Score=127.50  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=88.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEEEeC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDK  172 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~  172 (278)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|++++...++++++++++|+.+...    +++||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            36779999999999999999853 234899999999999999999998888789999999977542    4789999986


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      ..    .       +...+++.+.++|+|||.+++.......++
T Consensus       149 ~~----~-------~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~  181 (240)
T 1xdz_A          149 AV----A-------RLSVLSELCLPLVKKNGLFVALKAASAEEE  181 (240)
T ss_dssp             CC----S-------CHHHHHHHHGGGEEEEEEEEEEECC-CHHH
T ss_pred             cc----C-------CHHHHHHHHHHhcCCCCEEEEEeCCCchHH
Confidence            52    1       456788999999999999999876555444

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.65  E-value=6.8e-16  Score=134.98  Aligned_cols=113  Identities=15%  Similarity=0.130  Sum_probs=90.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc---ceEEEEccccCCccCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS---CIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++..+++.   +++++.+|+.+...+++||+|++++
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np  300 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP  300 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence            345799999999999999999984 458999999999999999999988764   4889999999865668999999999


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +|+....  ........+++++.++|||||.++++....
T Consensus       301 pfh~~~~--~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          301 PFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             CC---------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CcccCcc--cCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence            9864321  111234467899999999999999976444

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.65  E-value=1.9e-15  Score=122.20  Aligned_cols=113  Identities=17%  Similarity=0.221  Sum_probs=88.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--c-CCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~-~~~fD~v~~~~~  174 (278)
                      ++.+|||||||+|.++..++... ..+++|+|+|+.+++.|++++...+++++.++++|+.+..  . +++||+|+++.+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            56799999999999999999873 3589999999999999999999888878999999998864  2 578999998754


Q ss_pred             cceecc-CCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ..+... |.........+++.+.++|+|||.+++.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  158 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  158 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence            221100 0000012256789999999999999998754

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.65  E-value=8e-15  Score=116.09  Aligned_cols=104  Identities=23%  Similarity=0.306  Sum_probs=87.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC-Ccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK-GTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~-~~~  175 (278)
                      .++.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++     +++.++++|+.+.+. +++||+|+++ .++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~  118 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISETDFDLIVSAGNVM  118 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCCCCEEEEEECCCCG
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCCCceeEEEECCcHH
Confidence            4678999999999999999999864 8999999999999999876     358899999988654 5789999998 555


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++.     ......+++.+.++|+|||.+++...+.
T Consensus       119 ~~~~-----~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          119 GFLA-----EDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             hhcC-----hHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            5442     3356788899999999999999987654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.65  E-value=3.9e-16  Score=131.10  Aligned_cols=133  Identities=17%  Similarity=0.100  Sum_probs=100.4

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  162 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~  162 (278)
                      +....++..+....++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.++++++..++.++.++++|+.+...
T Consensus        69 d~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~  148 (274)
T 3ajd_A           69 SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKD  148 (274)
T ss_dssp             CSGGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch
Confidence            333444444455678889999999999999999874  435899999999999999999999988889999999987643


Q ss_pred             -----CCCccEEEeCCccceecc-C--C--------CChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703          163 -----ERQFQLVMDKGTLDAIGL-H--P--------DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  217 (278)
Q Consensus       163 -----~~~fD~v~~~~~~~~~~~-~--~--------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  217 (278)
                           .++||+|+++.++..... .  +        .-......+++.+.++|||||++++++++...++.
T Consensus       149 ~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~en  219 (274)
T 3ajd_A          149 YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEEN  219 (274)
T ss_dssp             HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSS
T ss_pred             hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHh
Confidence                 578999999866543211 0  0        00023467889999999999999999887654433

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.65  E-value=9.5e-16  Score=130.28  Aligned_cols=103  Identities=16%  Similarity=0.243  Sum_probs=88.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhh--CCCCcEEEEeCChHHHHHHHHHhhhC--CCcceEEEEccccCCcc-C------CCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSK--QGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTKL-E------RQF  166 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~~~D~s~~~i~~a~~~~~~~--~~~~~~~~~~d~~~~~~-~------~~f  166 (278)
                      .++.+|||+|||+|.++..++.  .+..+|+|+|+|+.+++.|++++...  ...+++++++|+.+.+. .      ++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            3678999999999999999995  33469999999999999999998876  23579999999998764 3      689


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      |+|++..+++++        +...+++++.++|+|||.+++.
T Consensus       115 D~V~~~~~l~~~--------~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          115 DMITAVECAHWF--------DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             EEEEEESCGGGS--------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEeHhhHHHHh--------CHHHHHHHHHHhcCCCcEEEEE
Confidence            999999888766        4567789999999999999884

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.65  E-value=8.3e-16  Score=134.57  Aligned_cols=111  Identities=20%  Similarity=0.278  Sum_probs=94.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++..+++ +++++++|+.+...+ ++||+|+++.+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhccccCCCeEEEEECCchh
Confidence            3678999999999999999999975 999999999999999999998886 489999999987654 8999999999986


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +..  .........+++++.++|+|||.++++....
T Consensus       310 ~~~--~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          310 VGG--AVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             TTC--SSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             hcc--cccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            421  1123466788899999999999999986544

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.65  E-value=5.9e-16  Score=124.69  Aligned_cols=101  Identities=21%  Similarity=0.299  Sum_probs=87.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||+|.++..+   +..+++|+|+|+.+++.++++.     .++.++++|+.+.+. +++||+|++..++++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  107 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVVLLFTTLEF  107 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEEEEESCTTT
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEEEEcChhhh
Confidence            6779999999999999888   4448999999999999999876     468899999988764 578999999998887


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +.       +...+++++.++|||||.+++.+++...
T Consensus       108 ~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A          108 VE-------DVERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             CS-------CHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             cC-------CHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence            75       5678889999999999999999877653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.64  E-value=5.8e-16  Score=126.88  Aligned_cols=111  Identities=13%  Similarity=0.238  Sum_probs=90.4

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc---CC
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ER  164 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~---~~  164 (278)
                      ++..+....++.+|||+|||+|..+..++... ..+|+++|+++.+++.|+++++..++. +++++.+|+.+..+   ++
T Consensus        62 ~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (232)
T 3ntv_A           62 LIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDK  141 (232)
T ss_dssp             HHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTS
T ss_pred             HHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccC
Confidence            33333444567899999999999999999952 358999999999999999999998875 69999999987644   68


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +||+|+++....          ....+++.+.++|+|||++++...
T Consensus       142 ~fD~V~~~~~~~----------~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          142 VYDMIFIDAAKA----------QSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             CEEEEEEETTSS----------SHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             CccEEEEcCcHH----------HHHHHHHHHHHhcCCCeEEEEeeC
Confidence            899999764322          455678999999999999998644

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.64  E-value=9.5e-16  Score=131.20  Aligned_cols=129  Identities=15%  Similarity=0.161  Sum_probs=98.6

Q ss_pred             hhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCcc
Q 023703           91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQ  167 (278)
Q Consensus        91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD  167 (278)
                      ...+....++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.++++++..++.++.++++|+.+... +++||
T Consensus       110 ~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD  189 (315)
T 1ixk_A          110 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD  189 (315)
T ss_dssp             HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred             HHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCC
Confidence            333445678889999999999999999975  234899999999999999999999888789999999987653 57899


Q ss_pred             EEEeCCccceecc---CCC-----Ch-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          168 LVMDKGTLDAIGL---HPD-----GP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       168 ~v~~~~~~~~~~~---~~~-----~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      +|+++.+......   ++.     ..       .....+++++.++|||||++++++++...++...
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~  256 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEF  256 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHH
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHH
Confidence            9998766432211   110     01       1125788999999999999999988765544333

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.63  E-value=1.2e-15  Score=130.48  Aligned_cols=112  Identities=19%  Similarity=0.188  Sum_probs=91.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------CCcceEEEEccccCCc----c---C
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GFSCIKFLVDDVLDTK----L---E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~~~~~~~~~~d~~~~~----~---~  163 (278)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....       +..++.++++|+.+.+    .   +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            356799999999999999999875569999999999999999988653       2346999999998864    2   3


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++||+|++..+++++.   .+..+...+++++.++|||||.+++.+++.
T Consensus       113 ~~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSF---ESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             CCEEEEEEETCGGGGG---GSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCEEEEEEecchhhcc---CCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            5899999988876651   123456788899999999999999998765

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.63  E-value=4.8e-16  Score=120.92  Aligned_cols=102  Identities=15%  Similarity=0.213  Sum_probs=86.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..++..+. +++|+|+|+.+++.++++     .+++++..+| . ...+++||+|++..+++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~-~~~~~~~D~v~~~~~l~   86 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDP-K-EIPDNSVDFILFANSFH   86 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSG-G-GSCTTCEEEEEEESCST
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-C-CCCCCceEEEEEccchh
Confidence            35677999999999999999999975 999999999999999987     2578999999 2 22357899999999888


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++.       +...+++++.++|||||.+++.+....
T Consensus        87 ~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           87 DMD-------DKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             TCS-------CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ccc-------CHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            774       567788999999999999999876543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.63  E-value=1.7e-15  Score=123.76  Aligned_cols=102  Identities=20%  Similarity=0.233  Sum_probs=88.3

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-ccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++...+  ++.++.+|+.+. ...++||+|++..+
T Consensus        67 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~  143 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEEKPYDRVVVWAT  143 (231)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccCCCccEEEECCc
Confidence            44677899999999999999999986 589999999999999999987765  799999999873 34678999999998


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++++.             .++.++|+|||++++..++..
T Consensus       144 ~~~~~-------------~~~~~~L~pgG~l~~~~~~~~  169 (231)
T 1vbf_A          144 APTLL-------------CKPYEQLKEGGIMILPIGVGR  169 (231)
T ss_dssp             BSSCC-------------HHHHHTEEEEEEEEEEECSSS
T ss_pred             HHHHH-------------HHHHHHcCCCcEEEEEEcCCC
Confidence            87765             578999999999999976554

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=1.5e-15  Score=122.78  Aligned_cols=105  Identities=14%  Similarity=0.153  Sum_probs=90.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-C-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|.++..++..+ . .+|+++|+|+.+++.+++++...+++++.+..+|+..... .++||+|++.
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  153 (215)
T 2yxe_A           74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT  153 (215)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence            45678899999999999999999873 2 4899999999999999999988887789999999865433 5789999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .+++++.             +++.++|||||++++...+.+
T Consensus       154 ~~~~~~~-------------~~~~~~L~pgG~lv~~~~~~~  181 (215)
T 2yxe_A          154 AAGPKIP-------------EPLIRQLKDGGKLLMPVGRYL  181 (215)
T ss_dssp             SBBSSCC-------------HHHHHTEEEEEEEEEEESSSS
T ss_pred             CchHHHH-------------HHHHHHcCCCcEEEEEECCCC
Confidence            9887765             688999999999999987653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.63  E-value=1.2e-15  Score=126.62  Aligned_cols=105  Identities=24%  Similarity=0.284  Sum_probs=89.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++..+++. +++.++|+.+...+++||+|+++...+
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCcHH
Confidence            45778999999999999999999886 9999999999999999999988875 899999987643467899999875543


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                                ....++..+.++|+|||.++++.....
T Consensus       196 ----------~~~~~l~~~~~~LkpgG~lils~~~~~  222 (254)
T 2nxc_A          196 ----------LHAALAPRYREALVPGGRALLTGILKD  222 (254)
T ss_dssp             ----------HHHHHHHHHHHHEEEEEEEEEEEEEGG
T ss_pred             ----------HHHHHHHHHHHHcCCCCEEEEEeeccC
Confidence                      345677999999999999999865443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.63  E-value=1.4e-15  Score=131.95  Aligned_cols=106  Identities=19%  Similarity=0.248  Sum_probs=89.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+...+++||+|++..++.
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            46789999999999999999998767999999997 88999999998887 46999999999877678899999987765


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.     .......+.++.++|||||.+++..
T Consensus       128 ~~~-----~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          128 MLF-----NERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             TBT-----TTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             cCC-----hHHHHHHHHHHHhhcCCCeEEEEec
Confidence            553     2244556678999999999998654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.62  E-value=1.3e-15  Score=133.97  Aligned_cols=107  Identities=20%  Similarity=0.358  Sum_probs=90.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhC-----C-C--cceEEEEccccCC------
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-----G-F--SCIKFLVDDVLDT------  160 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~-----~-~--~~~~~~~~d~~~~------  160 (278)
                      ..++.+|||+|||+|.++..++..  ...+|+|+|+|+.+++.|+++++..     | .  ++++++++|+.+.      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            347789999999999999999886  2348999999999999999987643     2 1  4799999999885      


Q ss_pred             cc-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          161 KL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       161 ~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +. +++||+|+++.+++++.       +...+++++.++|||||.+++.+.
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~-------d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLST-------NKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCS-------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcCC-------CHHHHHHHHHHHcCCCCEEEEEEe
Confidence            43 57899999999988775       567888999999999999999764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.62  E-value=2.5e-16  Score=122.71  Aligned_cols=103  Identities=13%  Similarity=0.071  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++++..+|+. ++++  .|.....++++||+|+...++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L  125 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML  125 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence            45779999999999999999877 3349999999999999999999999876 4555  666655567889999999999


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++.       +....+.++.+.|+|||.++...
T Consensus       126 HlL~-------~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          126 PVLK-------QQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHHH-------HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             Hhhh-------hhHHHHHHHHHHhCCCCEEEEeC
Confidence            8774       33344468999999999887764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.62  E-value=1.1e-15  Score=124.30  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=92.2

Q ss_pred             ccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--
Q 023703           87 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--  161 (278)
Q Consensus        87 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--  161 (278)
                      ...++..+....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|+++++..++. +++++++|+.+..  
T Consensus        46 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~  125 (221)
T 3u81_A           46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQ  125 (221)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHH
Confidence            3344444444556789999999999999999985 2 358999999999999999999988876 4999999986532  


Q ss_pred             cC-----CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          162 LE-----RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       162 ~~-----~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ..     ++||+|++.....+..       ....++..+ ++|||||++++.+....
T Consensus       126 ~~~~~~~~~fD~V~~d~~~~~~~-------~~~~~~~~~-~~LkpgG~lv~~~~~~~  174 (221)
T 3u81_A          126 LKKKYDVDTLDMVFLDHWKDRYL-------PDTLLLEKC-GLLRKGTVLLADNVIVP  174 (221)
T ss_dssp             TTTTSCCCCCSEEEECSCGGGHH-------HHHHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred             HHHhcCCCceEEEEEcCCcccch-------HHHHHHHhc-cccCCCeEEEEeCCCCc
Confidence            12     6899999887654432       444566777 99999999999876544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.62  E-value=2.4e-15  Score=139.90  Aligned_cols=116  Identities=17%  Similarity=0.248  Sum_probs=96.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhh------CCCcceEEEEccccCCcc-CCCccE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANR------DGFSCIKFLVDDVLDTKL-ERQFQL  168 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~------~~~~~~~~~~~d~~~~~~-~~~fD~  168 (278)
                      .++.+|||+|||+|.++..+++.+.  .+|+|+|+|+.+++.|++++..      .++.+++++++|+.+.+. .++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            4778999999999999999999862  4899999999999999986653      355689999999998765 488999


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      |++..+++++.     ......+++++.++|||| .+++.+++...+....
T Consensus       800 VV~~eVLeHL~-----dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~  844 (950)
T 3htx_A          800 GTCLEVIEHME-----EDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQ  844 (950)
T ss_dssp             EEEESCGGGSC-----HHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHT
T ss_pred             EEEeCchhhCC-----hHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhh
Confidence            99999998875     234456889999999999 8888888765544443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.62  E-value=2.2e-15  Score=119.10  Aligned_cols=106  Identities=16%  Similarity=0.249  Sum_probs=89.9

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccC-CCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-~~fD~v~~~~  173 (278)
                      ...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++...++ .++.+.++|+.+.... ++||+|++..
T Consensus        30 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG  108 (192)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECC
Confidence            34677899999999999999999987 6999999999999999999988887 5799999998763222 6899999987


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++          ....+++.+.++|+|||.+++..++.
T Consensus       109 ~~~----------~~~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A          109 SGG----------ELQEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             CTT----------CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             chH----------HHHHHHHHHHHhcCCCcEEEEEecCc
Confidence            653          34567799999999999999987654

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.62  E-value=3.4e-15  Score=120.38  Aligned_cols=102  Identities=16%  Similarity=0.152  Sum_probs=80.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC----ccCCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~fD~v~~  171 (278)
                      ..++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.+.+.++..  .++.++.+|+...    +..++||+|++
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEEEE
Confidence            357789999999999999999886 3248999999999888777666544  4788899998774    33578999998


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +..      +   +.....+++++.++|||||.+++..
T Consensus       133 ~~~------~---~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          133 DIA------Q---KNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CCC------S---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecc------C---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            621      1   1244456799999999999999984

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.62  E-value=2.8e-15  Score=129.61  Aligned_cols=105  Identities=20%  Similarity=0.244  Sum_probs=87.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccC-CCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|+++++.+++ ++++++++|+.+.+.+ ++||+|+++..
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  140 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  140 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence            356789999999999999999999766999999997 99999999998887 5699999999987654 78999999763


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEE
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV  206 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  206 (278)
                      ...+  ..  ......++..+.++|||||.++
T Consensus       141 ~~~l--~~--~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          141 GYFL--LF--ESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             BTTB--TT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhc--cC--HHHHHHHHHHHHhhcCCCcEEE
Confidence            2222  11  2255677899999999999998

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.62  E-value=3.3e-15  Score=123.91  Aligned_cols=106  Identities=20%  Similarity=0.229  Sum_probs=89.3

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEe
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMD  171 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~  171 (278)
                      ....++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|+++++..++++ +++.++|+.+...+++||+|++
T Consensus        89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~  168 (255)
T 3mb5_A           89 AGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVIL  168 (255)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEE
T ss_pred             hCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEE
Confidence            34567889999999999999999987 4 4589999999999999999999888776 9999999987655678999998


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +.+            ....+++++.++|+|||.+++..+..
T Consensus       169 ~~~------------~~~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          169 DLP------------QPERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             CSS------------CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCC------------CHHHHHHHHHHHcCCCCEEEEEECCH
Confidence            532            22345689999999999999987654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.62  E-value=7.7e-15  Score=126.24  Aligned_cols=113  Identities=17%  Similarity=0.187  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCcc-----CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      .++.+|||+|||+|.++..++..|. +|+++|+|+.+++.|++|++.+++.+  ++++++|+.+...     .++||+|+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            4667999999999999999999886 99999999999999999999888764  9999999987532     46899999


Q ss_pred             eCCccceeccC---CCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLH---PDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.....-.   .........+++.+.++|+|||.+++....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            98874222100   001234567889999999999997776533

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.62  E-value=1.3e-15  Score=123.79  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             ccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-
Q 023703           87 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-  162 (278)
Q Consensus        87 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-  162 (278)
                      ...++..+....++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|++++...++.+ ++++++|+.+... 
T Consensus        46 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  125 (223)
T 3duw_A           46 QGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQ  125 (223)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            3344554545567789999999999999999997 2 2489999999999999999999888765 9999999976422 


Q ss_pred             -----CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          163 -----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       163 -----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                           .++||+|++.....          ....+++.+.++|+|||.+++.....
T Consensus       126 ~~~~~~~~fD~v~~d~~~~----------~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          126 IENEKYEPFDFIFIDADKQ----------NNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             HHHTTCCCCSEEEECSCGG----------GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             HHhcCCCCcCEEEEcCCcH----------HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence                 16799999875532          45577899999999999999876543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=2.2e-15  Score=124.70  Aligned_cols=115  Identities=13%  Similarity=0.126  Sum_probs=92.2

Q ss_pred             cchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc--
Q 023703           88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--  162 (278)
Q Consensus        88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~--  162 (278)
                      ..++..+....++.+|||||||+|..+..++.. + ..+|+++|+|+.+++.|++++...++. +++++.+|+.+...  
T Consensus        52 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~  131 (248)
T 3tfw_A           52 GQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL  131 (248)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC
T ss_pred             HHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc
Confidence            334444444557789999999999999999987 2 358999999999999999999988876 69999999876321  


Q ss_pred             --CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          163 --ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       163 --~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                        .++||+|++....          .....+++++.++|||||++++.....
T Consensus       132 ~~~~~fD~V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          132 GECPAFDLIFIDADK----------PNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             CSCCCCSEEEECSCG----------GGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             CCCCCeEEEEECCch----------HHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence              3489999986532          245667899999999999999976543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.62  E-value=1.4e-15  Score=130.28  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=89.8

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|.++..+++.+.  .+|+++|+|+.+++.|+++++..++.++++..+|+.+.. ..++||+|++.
T Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~  151 (317)
T 1dl5_A           72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (317)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEc
Confidence            456788999999999999999998742  359999999999999999999888878999999998744 35789999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .+++++.             +.+.++|||||++++...+.
T Consensus       152 ~~~~~~~-------------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          152 VGVDEVP-------------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             SBBSCCC-------------HHHHHHEEEEEEEEEEBCBG
T ss_pred             CCHHHHH-------------HHHHHhcCCCcEEEEEECCC
Confidence            9988775             67889999999999986443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.61  E-value=1.9e-15  Score=132.49  Aligned_cols=107  Identities=16%  Similarity=0.233  Sum_probs=89.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++++.+++.+ ++++++|+.+...+++||+|++....
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            35678999999999999999999987799999999 99999999999988765 99999999988777899999996543


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ..+. +   ......++..+.++|||||.+++.
T Consensus       140 ~~l~-~---e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          140 YFLL-R---ESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             TTBT-T---TCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             hccc-c---hHHHHHHHHHHHhhCCCCeEEEEe
Confidence            3321 1   124566779999999999999874

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.61  E-value=1.8e-15  Score=124.00  Aligned_cols=106  Identities=23%  Similarity=0.290  Sum_probs=89.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEe-CCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD-KGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~-~~~~~  176 (278)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++.     +++.++++|+.+.+.+++||+|++ ..+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  112 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRLGRKFSAVVSMFSSVG  112 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcccCCCCcEEEEcCchHh
Confidence            4667999999999999999999864 8999999999999999875     468999999998766788999995 44776


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++.    .+.+...+++++.++|+|||.+++..++.+
T Consensus       113 ~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A          113 YLK----TTEELGAAVASFAEHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             GCC----SHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             hcC----CHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence            552    334677889999999999999999875543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.61  E-value=1.8e-15  Score=132.88  Aligned_cols=117  Identities=12%  Similarity=0.072  Sum_probs=94.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCcc-----CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      .++.+|||+|||+|.+++.++..|+.+|+++|+|+.+++.|++|++.+++.  +++++++|+.+...     ..+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            567899999999999999999987668999999999999999999999986  79999999977421     35899999


Q ss_pred             eCCccceec--cCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          171 DKGTLDAIG--LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       171 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++++.....  ...........++..+.++|+|||.++++++....
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~  336 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM  336 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence            988763211  11222334456778889999999999999876654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.61  E-value=5.4e-15  Score=121.23  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhh------CCCcceEEEEccccC-Cc---cCCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR------DGFSCIKFLVDDVLD-TK---LERQF  166 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~------~~~~~~~~~~~d~~~-~~---~~~~f  166 (278)
                      .++.+|||||||+|.++..++.. +...|+|+|+|+.+++.|+++++.      .+..++.++++|+.+ ++   .+++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            35568999999999999999987 335899999999999999988754      456789999999987 33   25789


Q ss_pred             cEEEeCCccceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          167 QLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       167 D~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      |.|+.+.+-.+.. -|.........+++++.++|||||.+++.+...
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~  171 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL  171 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            9998643211110 000000011467899999999999999987654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=7.8e-16  Score=128.29  Aligned_cols=100  Identities=15%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++.      +++++++|+.+.+. +++||+|++..+++
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDKSVDGVISILAIH  105 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCTTCBSEEEEESCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCCCCEeEEEEcchHh
Confidence            567899999999999999999976 48999999999999876542      78999999988765 58999999999988


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++.       +...+++++.++|| ||.+++.+++.
T Consensus       106 ~~~-------~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A          106 HFS-------HLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             GCS-------SHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             hcc-------CHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence            875       67788899999999 99888877653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.61  E-value=3.6e-15  Score=129.40  Aligned_cols=106  Identities=18%  Similarity=0.278  Sum_probs=88.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|+++++.+++.+ ++++++|+.+.+. .++||+|++....
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            46789999999999999999999877999999995 9999999999988765 9999999999865 4899999997654


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ..+. +   ......++..+.++|||||+++..
T Consensus       144 ~~l~-~---~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          144 YCLF-Y---ESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BTBT-B---TCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccc-C---chhHHHHHHHHHHhCCCCCEEccc
Confidence            3332 1   225566778999999999998753

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.61  E-value=3e-15  Score=130.26  Aligned_cols=118  Identities=20%  Similarity=0.186  Sum_probs=94.8

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEe
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMD  171 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~  171 (278)
                      ....++.+|||+|||+|.++..++..+  ..+++|+|+++.+++.|++|++..+++++++.++|+.+.+. .+.||+|++
T Consensus       199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~  278 (354)
T 3tma_A          199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA  278 (354)
T ss_dssp             TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred             hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence            345678899999999999999999863  25899999999999999999999988789999999998764 467899999


Q ss_pred             CCccceeccCCCC-hhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          172 KGTLDAIGLHPDG-PLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       172 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++++..-...... ......+++.+.++|+|||.+++.+++.
T Consensus       279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            9998543211111 1123678899999999999999998753

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.60  E-value=1.3e-15  Score=123.89  Aligned_cols=114  Identities=22%  Similarity=0.268  Sum_probs=91.9

Q ss_pred             cchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc--
Q 023703           88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL--  162 (278)
Q Consensus        88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~--  162 (278)
                      ..++..+....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|+++++..++.+ ++++++|+.+...  
T Consensus        53 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  132 (225)
T 3tr6_A           53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAEL  132 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHh
Confidence            344444444557789999999999999999987 2 3589999999999999999999888765 9999999976422  


Q ss_pred             C-----CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          163 E-----RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       163 ~-----~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .     ++||+|+.+...          .....+++.+.++|+|||.+++....
T Consensus       133 ~~~~~~~~fD~v~~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          133 IHAGQAWQYDLIYIDADK----------ANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             HTTTCTTCEEEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             hhccCCCCccEEEECCCH----------HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            2     789999976542          25566789999999999999997654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=7.3e-15  Score=115.20  Aligned_cols=104  Identities=16%  Similarity=0.168  Sum_probs=87.6

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ...++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++..+++++++++++|+.+...+++||+|+++.+ 
T Consensus        32 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~-  109 (183)
T 2yxd_A           32 NLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT-  109 (183)
T ss_dssp             CCCTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC-
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc-
Confidence            3456789999999999999999994 46999999999999999999999888789999999987334578999999877 


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .          ....+++.+.++  |||.+++..++..
T Consensus       110 ~----------~~~~~l~~~~~~--~gG~l~~~~~~~~  135 (183)
T 2yxd_A          110 K----------NIEKIIEILDKK--KINHIVANTIVLE  135 (183)
T ss_dssp             S----------CHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred             c----------cHHHHHHHHhhC--CCCEEEEEecccc
Confidence            1          455667888888  9999999986543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.60  E-value=5.1e-15  Score=121.42  Aligned_cols=105  Identities=15%  Similarity=0.267  Sum_probs=88.6

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-ccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|++++...++.++.+..+|.... +...+||+|++..+
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~  167 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG  167 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCc
Confidence            45678899999999999999999873258999999999999999999988887899999997432 22356999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +.++.             +++.++|+|||++++...+..
T Consensus       168 ~~~~~-------------~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          168 APKIP-------------EPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             BSSCC-------------HHHHHTEEEEEEEEEEECSSS
T ss_pred             HHHHH-------------HHHHHhcCCCcEEEEEEecCC
Confidence            87665             578999999999999987654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.60  E-value=3.3e-15  Score=126.57  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=81.9

Q ss_pred             CCCCeEEEEecCCCHHHHHH----hhC-CCCcE--EEEeCChHHHHHHHHHhhhC-CCcceEE--EEccccCCc------
Q 023703           98 LSSWSVLDIGTGNGLLLQEL----SKQ-GFSDL--TGVDYSEDAINLAQSLANRD-GFSCIKF--LVDDVLDTK------  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l----~~~-~~~~v--~~~D~s~~~i~~a~~~~~~~-~~~~~~~--~~~d~~~~~------  161 (278)
                      .++.+|||||||+|.++..+    +.. +...|  +|+|+|+.|++.|++++... +++++.+  ..++..+..      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            45679999999999766533    332 22233  99999999999999988653 4445544  455554432      


Q ss_pred             -cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          162 -LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       162 -~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                       .+++||+|++..+++++.       +...++++++++|||||.+++...+.
T Consensus       131 ~~~~~fD~V~~~~~l~~~~-------d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVK-------DIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCS-------CHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cCCCceeEEEEeeeeeecC-------CHHHHHHHHHHHcCCCcEEEEEEecC
Confidence             257899999999999886       77788899999999999999986554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.60  E-value=2.8e-15  Score=133.54  Aligned_cols=141  Identities=16%  Similarity=0.144  Sum_probs=107.5

Q ss_pred             cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc
Q 023703           84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  161 (278)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~  161 (278)
                      ++...+++..+....++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++|++..|+.++.+.++|..+..
T Consensus        90 Qd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~  169 (456)
T 3m4x_A           90 QEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV  169 (456)
T ss_dssp             CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH
T ss_pred             ECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh
Confidence            3444455555556678899999999999999999875  23489999999999999999999999888999999998764


Q ss_pred             --cCCCccEEEeCCccceeccCCCCh---------------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhh
Q 023703          162 --LERQFQLVMDKGTLDAIGLHPDGP---------------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  224 (278)
Q Consensus       162 --~~~~fD~v~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  224 (278)
                        .+++||+|+++.+......-...+               .....++..+.++|||||++++++|+...++....+..+
T Consensus       170 ~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~  249 (456)
T 3m4x_A          170 PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWL  249 (456)
T ss_dssp             HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHH
Confidence              368899999987643332111111               112377899999999999999999988766655554443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.60  E-value=2.9e-15  Score=130.10  Aligned_cols=110  Identities=13%  Similarity=0.103  Sum_probs=87.3

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHh-------hhCCC--cceEEEEccccCCccC--
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA-------NRDGF--SCIKFLVDDVLDTKLE--  163 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~-------~~~~~--~~~~~~~~d~~~~~~~--  163 (278)
                      ...++.+|||||||+|.+++.++.. ++.+|+|+|+|+.+++.|+++.       +..|+  .+++++++|+.+.+..  
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~  249 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  249 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc
Confidence            4568889999999999999999865 6556999999999999998764       33444  4799999999987653  


Q ss_pred             -CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          164 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       164 -~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                       ..||+|+++.++. .       .+....|.++.++|||||++++.....+
T Consensus       250 ~~~aDVVf~Nn~~F-~-------pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          250 IANTSVIFVNNFAF-G-------PEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHTCSEEEECCTTC-C-------HHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             cCCccEEEEccccc-C-------chHHHHHHHHHHcCCCCcEEEEeecccC
Confidence             4799999987652 1       1556667889999999999998754433

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.60  E-value=1.2e-15  Score=124.01  Aligned_cols=116  Identities=21%  Similarity=0.282  Sum_probs=90.6

Q ss_pred             ccccchhhhccccCCCC---eEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccc
Q 023703           85 DLKSEPVEENDKYLSSW---SVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDV  157 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~---~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~  157 (278)
                      .....++..+....++.   +|||+|||+|..+..++.. + ..+|+++|+|+.+++.|+++++..++.  +++++++|+
T Consensus        39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda  118 (221)
T 3dr5_A           39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP  118 (221)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence            33344445444433444   9999999999999999884 2 358999999999999999999998876  699999998


Q ss_pred             cCCc--c-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          158 LDTK--L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       158 ~~~~--~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+..  . +++||+|++.....          ....+++.+.++|||||++++...
T Consensus       119 ~~~l~~~~~~~fD~V~~d~~~~----------~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          119 LDVMSRLANDSYQLVFGQVSPM----------DLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             HHHGGGSCTTCEEEEEECCCTT----------THHHHHHHHHHHEEEEEEEEETTT
T ss_pred             HHHHHHhcCCCcCeEEEcCcHH----------HHHHHHHHHHHHcCCCcEEEEeCC
Confidence            7753  2 57899999865322          455678999999999999999643

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.60  E-value=1.6e-15  Score=123.11  Aligned_cols=100  Identities=24%  Similarity=0.388  Sum_probs=83.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-----ccCCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~fD~v~~~~  173 (278)
                      ++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++      .++.+...|+.+.     ....+||+|++..
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECc
Confidence            557999999999999999999975 899999999999999986      3567788887765     2345699999988


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +++ ..       +...+++++.++|||||.+++.+++..
T Consensus       125 ~l~-~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          125 ALL-HQ-------DIIELLSAMRTLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             CCC-SS-------CCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             hhh-hh-------hHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence            876 22       455778999999999999999987653

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.60  E-value=7.2e-15  Score=120.14  Aligned_cols=101  Identities=10%  Similarity=0.180  Sum_probs=83.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC----CccCCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----TKLERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~----~~~~~~fD~v~~  171 (278)
                      ..++.+|||+|||+|.++..++.. |..+|+|+|+|+.+++.++++++..  +++.++.+|+.+    .+..++||+|+.
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIYE  149 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCEEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccEEEEEE
Confidence            356789999999999999999987 5458999999999999999998765  589999999987    444578999983


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .     +    ..+.....+++++.++|||||.+++.
T Consensus       150 ~-----~----~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          150 D-----V----AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             C-----C----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             e-----c----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            2     1    22334466789999999999999996

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=2.1e-15  Score=126.49  Aligned_cols=108  Identities=13%  Similarity=0.059  Sum_probs=90.2

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      +....++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++++.+++.++.++++|+.+.+..++||+|+++
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d  193 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMG  193 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEEC
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEEC
Confidence            344567889999999999999999987 3458999999999999999999999988899999999887335689999988


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++.           ....++..+.+.|+|||++++++...
T Consensus       194 ~p~-----------~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          194 YVH-----------KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CCS-----------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             Ccc-----------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            764           22335588899999999999876544

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.59  E-value=1.7e-15  Score=126.07  Aligned_cols=111  Identities=19%  Similarity=0.247  Sum_probs=89.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-----------------------------c
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-----------------------------S  148 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------------------------~  148 (278)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++...+.                             .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            46679999999999999999988655899999999999999998865421                             1


Q ss_pred             ce-EEEEccccCCcc--C---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          149 CI-KFLVDDVLDTKL--E---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       149 ~~-~~~~~d~~~~~~--~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++ .+.++|+.+..+  +   ++||+|++..+++++.   +...+...+++++.++|||||.+++....
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC---PDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc---CChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            27 899999987643  4   7899999998887543   11236778889999999999999998743

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.59  E-value=6.2e-15  Score=128.14  Aligned_cols=105  Identities=23%  Similarity=0.268  Sum_probs=86.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++++|||||||+|.+++.+++.|+++|+|+|.|+ +++.|+++++.+++.+ |+++.+|+.+...+++||+|++... .
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~-~  159 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWM-G  159 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCC-B
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecc-c
Confidence            46889999999999999999999988999999997 7899999999999865 9999999999888899999998432 2


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                      ...++.   .....++....++|||||.++-
T Consensus       160 ~~l~~e---~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          160 YGLLHE---SMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TTBTTT---CSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccc---chhhhHHHHHHhhCCCCceECC
Confidence            222121   2345566778899999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.59  E-value=8.8e-15  Score=118.89  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=84.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v  169 (278)
                      .++||.+|||+|||+|.++..+++. |. .+|+|+|+++.+++.++++++..  +|+..+.+|.....    ..+.+|+|
T Consensus        74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDvV  151 (233)
T 4df3_A           74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDGL  151 (233)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEEE
Confidence            4589999999999999999999987 43 38999999999999999988765  47889999987643    24789988


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.-..         +.+...++.++.++|||||.++++.
T Consensus       152 f~d~~~---------~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          152 YADVAQ---------PEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EECCCC---------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeccC---------ChhHHHHHHHHHHhccCCCEEEEEE
Confidence            864221         2256677899999999999999874

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.59  E-value=4.6e-15  Score=124.60  Aligned_cols=105  Identities=16%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhC-CCcceEEEEccccCCccCCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++++... +.+++++.++|+.+...+++||+|+++
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~  186 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD  186 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEc
Confidence            4567889999999999999999986  2358999999999999999999887 777899999999885456789999983


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .+            +...+++++.++|||||++++.+++.
T Consensus       187 ~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          187 IP------------DPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             CS------------CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             Cc------------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            21            22355689999999999999998765

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.59  E-value=3.2e-15  Score=133.25  Aligned_cols=140  Identities=17%  Similarity=0.188  Sum_probs=106.5

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-  161 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-  161 (278)
                      +...+++..+....++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.++++++..|+. +.++++|+.+.. 
T Consensus        87 d~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~  165 (464)
T 3m6w_A           87 EPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAE  165 (464)
T ss_dssp             CTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHH
T ss_pred             CHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhh
Confidence            444445555556678899999999999999999975  2248999999999999999999999987 999999988765 


Q ss_pred             -cCCCccEEEeCCccceecc---CCCC--------h----hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          162 -LERQFQLVMDKGTLDAIGL---HPDG--------P----LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       162 -~~~~fD~v~~~~~~~~~~~---~~~~--------~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                       .+++||+|+++.+......   ++..        .    .....+++.+.++|||||++++++|+...++....+..+.
T Consensus       166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l  245 (464)
T 3m6w_A          166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL  245 (464)
T ss_dssp             HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHH
Confidence             3678999998776533221   1111        0    1126788999999999999999998877666555554443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.58  E-value=6.5e-15  Score=120.02  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=90.3

Q ss_pred             hhhhcc-ccCCCCeEEEEecCCCHHHHHHhhCCC------CcEEEEeCChHHHHHHHHHhhhCC-----CcceEEEEccc
Q 023703           90 PVEEND-KYLSSWSVLDIGTGNGLLLQELSKQGF------SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDV  157 (278)
Q Consensus        90 ~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~~~~~~d~  157 (278)
                      ++..+. ...++.+|||+|||+|.++..++....      .+|+++|+++.+++.|++++...+     ..++.++.+|+
T Consensus        70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  149 (227)
T 2pbf_A           70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI  149 (227)
T ss_dssp             HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred             HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence            344443 456788999999999999999998632      389999999999999999998876     46799999999


Q ss_pred             cCCc-----cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          158 LDTK-----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       158 ~~~~-----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .+..     ..++||+|++..++.++.             +.+.++|+|||++++....
T Consensus       150 ~~~~~~~~~~~~~fD~I~~~~~~~~~~-------------~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          150 YQVNEEEKKELGLFDAIHVGASASELP-------------EILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             GGCCHHHHHHHCCEEEEEECSBBSSCC-------------HHHHHHEEEEEEEEEEEEE
T ss_pred             HhcccccCccCCCcCEEEECCchHHHH-------------HHHHHhcCCCcEEEEEEcc
Confidence            8753     357899999998877654             7889999999999998764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.58  E-value=3.2e-15  Score=123.73  Aligned_cols=113  Identities=14%  Similarity=0.154  Sum_probs=87.7

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhC---CCcc-----------------------
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRD---GFSC-----------------------  149 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~---~~~~-----------------------  149 (278)
                      ++.+|||+|||+|.++..++..   +..+|+|+|+|+.+++.|++++...   ++.+                       
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999999876   2248999999999999999988765   4322                       


Q ss_pred             ---eE-------------EEEccccCCc------cCCCccEEEeCCccceecc--CCCChhhHHHHHHHHHhcccCCcEE
Q 023703          150 ---IK-------------FLVDDVLDTK------LERQFQLVMDKGTLDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLL  205 (278)
Q Consensus       150 ---~~-------------~~~~d~~~~~------~~~~fD~v~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l  205 (278)
                         ++             +.++|+.+..      ...+||+|++++++....-  +..+......+++++.++|+|||++
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               66             9999998854      2348999999988754321  0122456678889999999999999


Q ss_pred             EEEecC
Q 023703          206 VITSCN  211 (278)
Q Consensus       206 ~~~~~~  211 (278)
                      +++...
T Consensus       211 ~~~~~~  216 (250)
T 1o9g_A          211 AVTDRS  216 (250)
T ss_dssp             EEEESS
T ss_pred             EEeCcc
Confidence            995443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.58  E-value=2.4e-15  Score=125.56  Aligned_cols=104  Identities=10%  Similarity=0.030  Sum_probs=89.3

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ....++.+|||+|||+|.+++.++..|.++|+++|+||.+++.+++|++.+++.+ ++++++|..+....+.||.|+++.
T Consensus       121 ~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~  200 (278)
T 3k6r_A          121 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY  200 (278)
T ss_dssp             HHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred             HhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC
Confidence            3346889999999999999999999886799999999999999999999999876 999999999987788999999876


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +...           ..++..+.++|||||.+.+..
T Consensus       201 p~~~-----------~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          201 VVRT-----------HEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             CSSG-----------GGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCcH-----------HHHHHHHHHHcCCCCEEEEEe
Confidence            5422           235578889999999987654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.58  E-value=2.5e-14  Score=115.64  Aligned_cols=117  Identities=16%  Similarity=0.121  Sum_probs=93.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccC-CCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~-~~fD~v~~~~  173 (278)
                      ..++.+|||||||+|.+++.++..+ ..+|+++|+++.+++.|++|++.+++.+ ++++.+|..+.... ++||+|+..+
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            3567899999999999999999986 3489999999999999999999999875 99999999764333 3799888643


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      .-         ......++..+...|+|+|.++++.. .........+..
T Consensus        93 ~G---------g~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~  132 (225)
T 3kr9_A           93 MG---------GRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQD  132 (225)
T ss_dssp             EC---------HHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHH
T ss_pred             CC---------hHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHH
Confidence            21         22356778999999999999888655 455666665554

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.57  E-value=1.1e-14  Score=128.59  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=94.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-c-ceEEEEccccCCcc-----CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-S-CIKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~-~~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      .++.+|||+|||+|.++..++..|+.+|+++|+|+.+++.|++|++.+++ + +++++++|+.+...     .++||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            57889999999999999999998766999999999999999999999998 6 79999999987532     46899999


Q ss_pred             eCCccceecc--CCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          171 DKGTLDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       171 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++++.....-  -.........++..+.+.|+|||++++++++...
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  344 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLM  344 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTC
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence            9877522110  0011135567789999999999999998876554

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.57  E-value=1.3e-14  Score=121.51  Aligned_cols=109  Identities=16%  Similarity=0.136  Sum_probs=88.2

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChH------HHHHHHHHhhhCCC-cceEEEEcc-cc--CCc-cC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSED------AINLAQSLANRDGF-SCIKFLVDD-VL--DTK-LE  163 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~------~i~~a~~~~~~~~~-~~~~~~~~d-~~--~~~-~~  163 (278)
                      ..++.+|||||||+|.++..++.. |. .+|+|+|+|+.      +++.|++++...++ ++++++++| ..  ..+ .+
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  120 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIAD  120 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCC
Confidence            457789999999999999999987 43 48999999997      99999999988776 469999998 33  333 35


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++||+|++..+++++.       +...+++.+.++++|||.+++.+...
T Consensus       121 ~~fD~v~~~~~l~~~~-------~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          121 QHFDRVVLAHSLWYFA-------SANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             CCCSEEEEESCGGGSS-------CHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             CCEEEEEEccchhhCC-------CHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            7899999999988774       33446677778888899999987544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.57  E-value=5.4e-15  Score=120.61  Aligned_cols=109  Identities=14%  Similarity=0.200  Sum_probs=89.2

Q ss_pred             hhhhcc-ccCCCCeEEEEecCCCHHHHHHhhC-CC------CcEEEEeCChHHHHHHHHHhhhCC-----CcceEEEEcc
Q 023703           90 PVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDD  156 (278)
Q Consensus        90 ~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~-~~------~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~~~~~~d  156 (278)
                      ++..+. ...++.+|||+|||+|.++..+++. +.      .+|+++|+++.+++.|++++...+     ..++.++.+|
T Consensus        74 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  153 (227)
T 1r18_A           74 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD  153 (227)
T ss_dssp             HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             HHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC
Confidence            344443 4567889999999999999999885 32      389999999999999999987654     4579999999


Q ss_pred             ccCCccC-CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          157 VLDTKLE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       157 ~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ..+...+ ++||+|++..++.++.             +++.++|||||++++....
T Consensus       154 ~~~~~~~~~~fD~I~~~~~~~~~~-------------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          154 GRKGYPPNAPYNAIHVGAAAPDTP-------------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GGGCCGGGCSEEEEEECSCBSSCC-------------HHHHHTEEEEEEEEEEESC
T ss_pred             cccCCCcCCCccEEEECCchHHHH-------------HHHHHHhcCCCEEEEEEec
Confidence            9874333 7899999998887664             7899999999999998765

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.57  E-value=7.2e-15  Score=129.72  Aligned_cols=116  Identities=24%  Similarity=0.255  Sum_probs=93.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-----CCCccEEEeC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----ERQFQLVMDK  172 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-----~~~fD~v~~~  172 (278)
                      ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++..+++. +++++++|+.+...     .++||+|+++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            77899999999999999999987679999999999999999999999987 79999999987532     4689999998


Q ss_pred             CccceeccCC--CChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          173 GTLDAIGLHP--DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       173 ~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++.....-..  ........++..+.++|+|||.+++++++...
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~  340 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV  340 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCC
Confidence            7752211000  00124567789999999999999999877643

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.57  E-value=8.5e-15  Score=121.88  Aligned_cols=101  Identities=23%  Similarity=0.344  Sum_probs=84.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++..    .+  ++++|+.+.+. +++||+|++..++.+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~  126 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPSGAFEAVLALGDVLS  126 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCCCCEEEEEEcchhhh
Confidence            667999999999999999999875 89999999999999998764    12  78899988765 578999999876655


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +.      .+...+++++.++|||||.+++..++.
T Consensus       127 ~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          127 YV------ENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             HC------SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             cc------ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            42      136778899999999999999988764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.57  E-value=1.7e-14  Score=117.36  Aligned_cols=105  Identities=16%  Similarity=0.312  Sum_probs=87.9

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCC-----CcceEEEEccccCCcc-CCCcc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKL-ERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~-----~~~~~~~~~d~~~~~~-~~~fD  167 (278)
                      ...++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.+++++...+     ..++.+..+|+..... .++||
T Consensus        74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence            3567889999999999999999886 33 389999999999999999988754     3479999999986543 57899


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +|++..++.++.             +++.++|||||++++..+...
T Consensus       154 ~i~~~~~~~~~~-------------~~~~~~LkpgG~lv~~~~~~~  186 (226)
T 1i1n_A          154 AIHVGAAAPVVP-------------QALIDQLKPGGRLILPVGPAG  186 (226)
T ss_dssp             EEEECSBBSSCC-------------HHHHHTEEEEEEEEEEESCTT
T ss_pred             EEEECCchHHHH-------------HHHHHhcCCCcEEEEEEecCC
Confidence            999988876654             788999999999999887654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.57  E-value=2.6e-14  Score=124.74  Aligned_cols=109  Identities=17%  Similarity=0.111  Sum_probs=90.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCC--ccCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDT--KLERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~--~~~~~fD~v~~~~  173 (278)
                      ....+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...++ ++++++.+|+.+.  +.+++||+|++..
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            35679999999999999999886 2348999999 9999999999988776 3699999999986  3457899999988


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++++.     ..+...++++++++|||||++++.+...
T Consensus       257 vlh~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (363)
T 3dp7_A          257 FLDCFS-----EEEVISILTRVAQSIGKDSKVYIMETLW  290 (363)
T ss_dssp             CSTTSC-----HHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred             hhhhCC-----HHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence            776553     4456788899999999999999987543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.57  E-value=8.2e-15  Score=131.94  Aligned_cols=105  Identities=19%  Similarity=0.256  Sum_probs=88.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+...+++||+|+++.++.
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence            46789999999999999999998766999999999 99999999999887 46999999999876667899999987754


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ++.     .......+..+.++|||||.+++.
T Consensus       236 ~~~-----~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          236 MLF-----NERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             HHT-----CHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             hcC-----cHHHHHHHHHHHHhcCCCCEEEEE
Confidence            442     124455667899999999999864

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.57  E-value=1.6e-14  Score=117.52  Aligned_cols=103  Identities=19%  Similarity=0.264  Sum_probs=86.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--cc-CCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KL-ERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--~~-~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++.       ..+..+|+.+.  +. +++||+|++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            467899999999999999999986 59999999999999998643       36788998763  32 478999999998


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      ++++.       +...+++++.++|+|||.+++..++....
T Consensus       103 l~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  136 (230)
T 3cc8_A          103 LEHLF-------DPWAVIEKVKPYIKQNGVILASIPNVSHI  136 (230)
T ss_dssp             GGGSS-------CHHHHHHHTGGGEEEEEEEEEEEECTTSH
T ss_pred             hhhcC-------CHHHHHHHHHHHcCCCCEEEEEeCCcchH
Confidence            88775       55678899999999999999998776543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.57  E-value=5.2e-15  Score=128.15  Aligned_cols=111  Identities=17%  Similarity=0.219  Sum_probs=90.7

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.+++++..+++ ++.++.+|+.+.. +++||+|++++++++
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV-KGRFDMIISNPPFHD  273 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC-CSCEEEEEECCCCCS
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc-cCCeeEEEECCCccc
Confidence            467999999999999999998853 3899999999999999999988876 4778899987753 678999999998864


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ...  ........+++++.++|||||.+++......
T Consensus       274 g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          274 GMQ--TSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             SSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             Ccc--CCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence            210  0123567889999999999999999876543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.57  E-value=1.2e-14  Score=113.27  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .++.+|||+|||+|.++..+++.+  +|+|+|+|+.+++.         ..+++++++|+.+...+++||+|+++.++..
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLCSINQESVDVVVFNPPYVP   90 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTTTBCGGGCSEEEECCCCBT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhhhcccCCCCEEEECCCCcc
Confidence            456799999999999999999997  89999999999987         1468999999988555689999999988754


Q ss_pred             eccC--CCChhhHHHHHHHHHhcccCCcEEEEEecC-CChHHHHHHHhh
Q 023703          178 IGLH--PDGPLKRIMYWDSVSKLVAPGGLLVITSCN-STKDELVHEVSN  223 (278)
Q Consensus       178 ~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~  223 (278)
                      ..-.  ..+......+++++.+.| |||.+++.... ....++...+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~  138 (170)
T 3q87_B           91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEE  138 (170)
T ss_dssp             TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHH
T ss_pred             CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHH
Confidence            3211  001112344567888888 99999998744 344455554443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.57  E-value=1.1e-15  Score=125.86  Aligned_cols=115  Identities=22%  Similarity=0.238  Sum_probs=92.2

Q ss_pred             ccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-
Q 023703           87 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-  162 (278)
Q Consensus        87 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-  162 (278)
                      ...++..+....++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|+++++..++. +++++++|+.+... 
T Consensus        48 ~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~  127 (242)
T 3r3h_A           48 QAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHS  127 (242)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            3344444444556789999999999999999985 2 348999999999999999999998875 69999999976432 


Q ss_pred             ------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          163 ------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       163 ------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                            .++||+|++....          .....+++.+.++|+|||++++....
T Consensus       128 ~~~~~~~~~fD~V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          128 LLNEGGEHQFDFIFIDADK----------TNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             HHHHHCSSCEEEEEEESCG----------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HhhccCCCCEeEEEEcCCh----------HHhHHHHHHHHHhcCCCeEEEEECCc
Confidence                  4789999986542          25566789999999999999997543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.57  E-value=6.2e-15  Score=120.67  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=91.0

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--c--C
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--L--E  163 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--~--~  163 (278)
                      ++..+....++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|++++...++. ++.++.+|+.+..  .  +
T Consensus        45 ~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  124 (233)
T 2gpy_A           45 SLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELY  124 (233)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTS
T ss_pred             HHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccC
Confidence            3333334456789999999999999999987 2358999999999999999999988874 5999999998752  2  5


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++||+|+++.+..          ....+++.+.++|+|||++++.+...
T Consensus       125 ~~fD~I~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~~~~~  163 (233)
T 2gpy_A          125 PLFDVLFIDAAKG----------QYRRFFDMYSPMVRPGGLILSDNVLF  163 (233)
T ss_dssp             CCEEEEEEEGGGS----------CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred             CCccEEEECCCHH----------HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence            7899999866542          45667799999999999999985433

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.56  E-value=3.9e-14  Score=114.67  Aligned_cols=118  Identities=14%  Similarity=0.061  Sum_probs=94.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCC-CccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLER-QFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~-~fD~v~~~  172 (278)
                      ...++.+|||||||+|.+++.++..+ ..+|+++|+++.+++.|++|++.+++.+ ++++++|..+...++ +||+|+..
T Consensus        18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia   97 (230)
T 3lec_A           18 YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC   97 (230)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence            33567899999999999999999986 3489999999999999999999999865 999999998865543 79998753


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      +.-         ......++....+.|+++|.|+++.. .....+...+..
T Consensus        98 GmG---------g~lI~~IL~~~~~~l~~~~~lIlqp~-~~~~~lr~~L~~  138 (230)
T 3lec_A           98 GMG---------GRLIADILNNDIDKLQHVKTLVLQPN-NREDDLRKWLAA  138 (230)
T ss_dssp             EEC---------HHHHHHHHHHTGGGGTTCCEEEEEES-SCHHHHHHHHHH
T ss_pred             CCc---------hHHHHHHHHHHHHHhCcCCEEEEECC-CChHHHHHHHHH
Confidence            321         22456777899999999999888864 445555555554

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.56  E-value=3.4e-15  Score=126.26  Aligned_cols=109  Identities=20%  Similarity=0.227  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC--------------c---------------
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--------------S---------------  148 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~--------------~---------------  148 (278)
                      .++.+|||||||+|.....++..+..+|+|+|+|+.+++.|++++.....              .               
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            36789999999999965555544335899999999999999986643110              0               


Q ss_pred             -ceEEEEccccC-Ccc------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          149 -CIKFLVDDVLD-TKL------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       149 -~~~~~~~d~~~-~~~------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       .+.++.+|+.+ .+.      +++||+|+++.+++++.   ....+...+++++.++|||||.|++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS---PDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence             14677789877 331      35699999999988742   112367788899999999999999974

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.56  E-value=6.6e-15  Score=121.68  Aligned_cols=115  Identities=14%  Similarity=0.210  Sum_probs=91.3

Q ss_pred             cccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc-
Q 023703           86 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-  161 (278)
Q Consensus        86 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~-  161 (278)
                      ....++..+....++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|+++++..++. +++++.+|+.+.. 
T Consensus        66 ~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~  145 (247)
T 1sui_A           66 DEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD  145 (247)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH
Confidence            33445554445556789999999999999999886 2 348999999999999999999988874 5999999987642 


Q ss_pred             -c------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          162 -L------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       162 -~------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                       .      .++||+|++....          .....+++.+.++|+|||++++...
T Consensus       146 ~l~~~~~~~~~fD~V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          146 EMIKDEKNHGSYDFIFVDADK----------DNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             HHHHSGGGTTCBSEEEECSCS----------TTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             HHHhccCCCCCEEEEEEcCch----------HHHHHHHHHHHHhCCCCeEEEEecC
Confidence             2      4789999986432          1456778999999999999998753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.56  E-value=1.2e-14  Score=136.45  Aligned_cols=127  Identities=14%  Similarity=0.143  Sum_probs=98.3

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCc--cCCCccEEEe
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LERQFQLVMD  171 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~--~~~~fD~v~~  171 (278)
                      ...++.+|||+|||+|.+++.++..|+.+|+++|+|+.+++.|++|++.+++.  +++++++|+.+..  ..++||+|++
T Consensus       536 ~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          536 QMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             HHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             HhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            34578899999999999999999988768999999999999999999999986  6999999998742  3578999999


Q ss_pred             CCccceecc----CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          172 KGTLDAIGL----HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       172 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      +++.-.-.-    ..........++..+.++|+|||+++++++..........+.
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~  670 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA  670 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH
Confidence            887521100    011123556788999999999999999887643333333333

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.56  E-value=7.9e-15  Score=131.86  Aligned_cols=123  Identities=19%  Similarity=0.264  Sum_probs=96.0

Q ss_pred             ccccC--CCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCcc
Q 023703           94 NDKYL--SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQ  167 (278)
Q Consensus        94 ~~~~~--~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD  167 (278)
                      +....  ++.+|||+|||+|..+..++.. + ...|+++|+|+.+++.++++++..|+.++.++++|+....  .+++||
T Consensus       110 ~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD  189 (479)
T 2frx_A          110 ALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD  189 (479)
T ss_dssp             HHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEE
T ss_pred             HhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCC
Confidence            33444  7889999999999999999986 2 2489999999999999999999999888999999998764  357899


Q ss_pred             EEEeCCccceec---cCCCC-----h-------hhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          168 LVMDKGTLDAIG---LHPDG-----P-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       168 ~v~~~~~~~~~~---~~~~~-----~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      .|+++.+.....   -++..     +       .....++.++.++|||||++++++|+...++
T Consensus       190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~E  253 (479)
T 2frx_A          190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEE  253 (479)
T ss_dssp             EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTT
T ss_pred             EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCccc
Confidence            999976653321   11111     1       1134678999999999999999988764433

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.56  E-value=2.4e-14  Score=126.48  Aligned_cols=107  Identities=14%  Similarity=0.184  Sum_probs=86.1

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHH-------HHHhhhCC--CcceEEEEccccCC--c--
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLA-------QSLANRDG--FSCIKFLVDDVLDT--K--  161 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a-------~~~~~~~~--~~~~~~~~~d~~~~--~--  161 (278)
                      ...++.+|||||||+|.++..++.. +..+|+|+|+++.+++.|       ++++...|  ..+++++++|....  .  
T Consensus       239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~  318 (433)
T 1u2z_A          239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA  318 (433)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence            3467889999999999999999986 656899999999999999       88888888  46899999865432  1  


Q ss_pred             -cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          162 -LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       162 -~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                       ..++||+|+++..+ +.       .+....++++.++|||||++++...
T Consensus       319 ~~~~~FDvIvvn~~l-~~-------~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          319 ELIPQCDVILVNNFL-FD-------EDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             HHGGGCSEEEECCTT-CC-------HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cccCCCCEEEEeCcc-cc-------ccHHHHHHHHHHhCCCCeEEEEeec
Confidence             24789999987554 11       2555677999999999999999753

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.55  E-value=4.9e-14  Score=118.66  Aligned_cols=106  Identities=21%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeC-ChHHHHHHHHHh-----hhCCCc-----ceEEEEccccCCc-----
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY-SEDAINLAQSLA-----NRDGFS-----CIKFLVDDVLDTK-----  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~-s~~~i~~a~~~~-----~~~~~~-----~~~~~~~d~~~~~-----  161 (278)
                      .++.+|||+|||+|.++..++..|..+|+++|+ |+.+++.|++++     ..+++.     ++.+...|..+..     
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            467899999999999999999987668999999 899999999999     555543     6888876655421     


Q ss_pred             --cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhccc---C--CcEEEEEec
Q 023703          162 --LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVA---P--GGLLVITSC  210 (278)
Q Consensus       162 --~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---p--gG~l~~~~~  210 (278)
                        ..++||+|++..++.+..       ....+++.+.++|+   |  ||++++...
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~-------~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~  206 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQ-------AHDALLRSVKMLLALPANDPTAVALVTFT  206 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGG-------GHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred             hccCCCCCEEEEeCcccChH-------HHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence              247899999876665433       66778899999999   9  998877643

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.55  E-value=3.5e-14  Score=127.27  Aligned_cols=133  Identities=20%  Similarity=0.231  Sum_probs=101.5

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cC-CCcc
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQ  167 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~-~~fD  167 (278)
                      .+....++.+|||+|||+|..+..++..  +..+|+++|+++.+++.++++++..|+.++.++++|+.+..  .. ++||
T Consensus       253 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD  332 (450)
T 2yxl_A          253 IVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVAD  332 (450)
T ss_dssp             HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEE
T ss_pred             HhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCC
Confidence            3345678889999999999999999985  22589999999999999999999999888999999998865  33 6899


Q ss_pred             EEEeCCccceecc---CC--------CChh----hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          168 LVMDKGTLDAIGL---HP--------DGPL----KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       168 ~v~~~~~~~~~~~---~~--------~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                      +|+++.+......   ++        .+..    ....+++.+.++|||||.+++++++...++....+..+.
T Consensus       333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l  405 (450)
T 2yxl_A          333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFL  405 (450)
T ss_dssp             EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHH
Confidence            9998766543321   11        1110    115678999999999999999998877655444444433

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.55  E-value=2.6e-14  Score=116.46  Aligned_cols=107  Identities=16%  Similarity=0.172  Sum_probs=84.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-Ccc--CCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKL--ERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~~~--~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++.     ++++++++|+.+ .+.  +++||+|+++..
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~  120 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-----PHADVYEWNGKGELPAGLGAPFGLIVSRRG  120 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-----TTSEEEECCSCSSCCTTCCCCEEEEEEESC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-----CCceEEEcchhhccCCcCCCCEEEEEeCCC
Confidence            5678999999999999999999964 8999999999999999872     579999999954 332  578999998622


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                                   ...+++++.++|||||.++..........+...+..
T Consensus       121 -------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  156 (226)
T 3m33_A          121 -------------PTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAA  156 (226)
T ss_dssp             -------------CSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHH
Confidence                         223348899999999999955444455555555544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.55  E-value=6.7e-15  Score=118.55  Aligned_cols=114  Identities=13%  Similarity=0.160  Sum_probs=89.0

Q ss_pred             cchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCC-c-c
Q 023703           88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-K-L  162 (278)
Q Consensus        88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~-~-~  162 (278)
                      ..++..+....++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.|+++++..++. +++++++|..+. + .
T Consensus        45 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  124 (210)
T 3c3p_A           45 GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ  124 (210)
T ss_dssp             HHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC
T ss_pred             HHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC
Confidence            334444434446779999999999999999987 2 358999999999999999999887765 499999999764 2 2


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++ ||+|+++...          .....+++++.++|+|||++++.+...
T Consensus       125 ~~-fD~v~~~~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~~~  163 (210)
T 3c3p_A          125 RD-IDILFMDCDV----------FNGADVLERMNRCLAKNALLIAVNALR  163 (210)
T ss_dssp             CS-EEEEEEETTT----------SCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred             CC-CCEEEEcCCh----------hhhHHHHHHHHHhcCCCeEEEEECccc
Confidence            45 9999986331          245677899999999999999876443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.55  E-value=2.7e-14  Score=122.86  Aligned_cols=105  Identities=25%  Similarity=0.329  Sum_probs=86.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccC-CCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++++.+++. +++++.+|+.+...+ ++||+|++....
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            4677999999999999999999876699999999 5899999999988875 499999999987654 789999997654


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                      ..+. +   ......++..+.++|||||.++.
T Consensus       116 ~~l~-~---~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          116 YFLL-Y---ESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTBS-T---TCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhcc-c---HHHHHHHHHHHHhhcCCCeEEEE
Confidence            3331 1   12445677889999999999974

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.55  E-value=3.5e-14  Score=123.02  Aligned_cols=113  Identities=21%  Similarity=0.213  Sum_probs=89.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCC------CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGF------SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~  170 (278)
                      ..++.+|||+|||+|.++..+++...      .+++|+|+++.+++.|+.++...++ ++.+.++|.......++||+|+
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~~~~fD~Ii  206 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVVI  206 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccccCCccEEE
Confidence            34567999999999999999887621      4799999999999999999988776 7899999988765568899999


Q ss_pred             eCCccceecc-------C---CCChh-hHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGL-------H---PDGPL-KRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~-------~---~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++++|..+.-       .   ..+.. ....+++.+.+.|+|||++++..+
T Consensus       207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            9999865421       0   00111 123578999999999999999874

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.55  E-value=5.6e-14  Score=114.65  Aligned_cols=117  Identities=13%  Similarity=0.018  Sum_probs=93.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCC-CccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLER-QFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~-~fD~v~~~~  173 (278)
                      ..++.+|||||||+|.+++.++..+ ..+|+++|+++.+++.|++|++.+++.+ ++++++|..+...++ +||+|+..+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            3567899999999999999999986 3489999999999999999999999865 999999998865544 599988632


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      .-         ......++....+.|+++|.|+++.. .....+...+..
T Consensus        99 mG---------g~lI~~IL~~~~~~L~~~~~lIlq~~-~~~~~lr~~L~~  138 (244)
T 3gnl_A           99 MG---------GTLIRTILEEGAAKLAGVTKLILQPN-IAAWQLREWSEQ  138 (244)
T ss_dssp             EC---------HHHHHHHHHHTGGGGTTCCEEEEEES-SCHHHHHHHHHH
T ss_pred             Cc---------hHHHHHHHHHHHHHhCCCCEEEEEcC-CChHHHHHHHHH
Confidence            21         22456777999999999999888864 455566665554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.55  E-value=3.7e-14  Score=116.07  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~  170 (278)
                      ..++.+|||+|||+|.++..+++. | ..+|+|+|+|+.+++.+.++++.+  .++.++++|+.+..    ..++||+|+
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~  152 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIF  152 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEE
Confidence            456789999999999999999987 2 358999999999988888887765  57999999998742    357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++.+         .+.....++.++.++|||||.+++...
T Consensus       153 ~~~~---------~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          153 ADVA---------QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             ECCC---------CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcCC---------CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            8544         123445567889999999999999643

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.54  E-value=2.3e-14  Score=125.84  Aligned_cols=120  Identities=21%  Similarity=0.245  Sum_probs=91.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--cCCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~  176 (278)
                      ++.+|||+|||+|.++..++..|. .|+++|+|+.+++.|++|++.+++. ..+.++|+.+..  ..+.||+|+++++.-
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            588999999999999999999986 4999999999999999999998875 467799988753  234599999987751


Q ss_pred             eeccCCCC----hhhHHHHHHHHHhcccCCcEEEEEecCCC--hHHHHHHHh
Q 023703          177 AIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNST--KDELVHEVS  222 (278)
Q Consensus       177 ~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~  222 (278)
                      .-  ....    ......++..+.++|+|||.+++++++..  .+.+...+.
T Consensus       292 ~~--~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~  341 (393)
T 4dmg_A          292 VK--RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVAR  341 (393)
T ss_dssp             CS--SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            10  0001    12345778899999999999998877655  334444443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.54  E-value=1.6e-13  Score=110.07  Aligned_cols=102  Identities=14%  Similarity=0.148  Sum_probs=82.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++..+++ +++++++|+.+.  +++||+|++++++.
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~--~~~~D~v~~~~p~~  123 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--NSRVDIVIMNPPFG  123 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--CCCCSEEEECCCCS
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHc--CCCCCEEEEcCCCc
Confidence            346789999999999999999998766899999999999999999988876 899999999875  35899999999976


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ...     ......+++.+.+++  ||.+++.
T Consensus       124 ~~~-----~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          124 SQR-----KHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             SSS-----TTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             ccc-----CCchHHHHHHHHHhc--CcEEEEE
Confidence            542     112345678888888  5544443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.54  E-value=1.4e-14  Score=117.47  Aligned_cols=96  Identities=18%  Similarity=0.264  Sum_probs=82.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~~  177 (278)
                      ++.+|||+|||+|.++..++..     +|+|+|+.+++.++++       ++.++++|+.+.+. +++||+|++..++++
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  114 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTICF  114 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence            4779999999999999988765     9999999999999875       57889999987664 468999999998887


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +.       +...+++++.++|+|||.+++..++..
T Consensus       115 ~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~~  143 (219)
T 1vlm_A          115 VD-------DPERALKEAYRILKKGGYLIVGIVDRE  143 (219)
T ss_dssp             SS-------CHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             cc-------CHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence            74       567788999999999999999887654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.54  E-value=3.5e-14  Score=122.45  Aligned_cols=110  Identities=15%  Similarity=0.276  Sum_probs=92.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..+++. +..+++++|++ .+++.|++++...++. +++++.+|+.+.+.++.||+|++..++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            56789999999999999999987 23489999999 9999999998887765 499999999886655569999998888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +++.     ......+++++.++|+|||++++.+...+
T Consensus       243 ~~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          243 HHFD-----VATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             ccCC-----HHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            7663     33567889999999999999999875543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.54  E-value=1.1e-14  Score=119.64  Aligned_cols=111  Identities=21%  Similarity=0.259  Sum_probs=89.1

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc----
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL----  162 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~----  162 (278)
                      ++..+....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|++++...++.+ +.++.+|+.+...    
T Consensus        51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  130 (239)
T 2hnk_A           51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLID  130 (239)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHh
Confidence            3344444456789999999999999999987 2 3589999999999999999999888765 9999999875311    


Q ss_pred             -------------C-CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          163 -------------E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       163 -------------~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                                   + ++||+|++.....          ....+++.+.++|+|||++++.+.
T Consensus       131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          131 SKSAPSWASDFAFGPSSIDLFFLDADKE----------NYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             CSSCCGGGTTTCCSTTCEEEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             hcccccccccccCCCCCcCEEEEeCCHH----------HHHHHHHHHHHHcCCCeEEEEEcc
Confidence                         2 7899999874432          455778999999999999999763

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.54  E-value=1.1e-14  Score=127.87  Aligned_cols=113  Identities=22%  Similarity=0.228  Sum_probs=92.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~~  173 (278)
                      ++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|+++++.+++.+++++++|+.+...     .++||+|++++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp  287 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP  287 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence            6789999999999999999988 56899999999999999999999998789999999987532     56899999987


Q ss_pred             ccceeccCCCC----hhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          174 TLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       174 ~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      +....  +...    ......++..+.++|+|||.+++++++...
T Consensus       288 P~~~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  330 (382)
T 1wxx_A          288 PAFAK--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM  330 (382)
T ss_dssp             CCSCC--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             CCCCC--ChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence            75221  1111    124457789999999999999999876544

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.53  E-value=5.2e-14  Score=122.24  Aligned_cols=106  Identities=19%  Similarity=0.266  Sum_probs=91.0

Q ss_pred             CCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--cCCCccEEEeCCcc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVMDKGTL  175 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--~~~~fD~v~~~~~~  175 (278)
                      +.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++++...++. +++++.+|+.+..  .++.||+|++..++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            789999999999999999987 3348999999 88999999999887765 4999999999876  66789999998888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++.     ......++++++++|+|||++++.+..
T Consensus       259 h~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          259 HYFD-----AREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             GGSC-----HHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccCC-----HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            7663     335578899999999999999998743

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.53  E-value=4.2e-14  Score=118.56  Aligned_cols=108  Identities=20%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             CCCeEEEEecCC---CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------c-
Q 023703           99 SSWSVLDIGTGN---GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L-  162 (278)
Q Consensus        99 ~~~~vLDiGcG~---G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~-  162 (278)
                      ...+|||||||+   |.++..+.+. +..+|+++|+|+.+++.|++++...  .+++++++|+.+..           . 
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--PNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--CCeEEEEeeCCCchhhhccchhhccCC
Confidence            346999999999   9887766654 2248999999999999999988543  47999999997632           1 


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ..+||+|++..+++++.     ......+++++.++|+|||.|++......
T Consensus       155 ~~~~d~v~~~~vlh~~~-----d~~~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLS-----PDVVDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             TTSCCEEEETTTGGGSC-----TTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             CCCCEEEEEechhhhCC-----cHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence            14799999999998775     12467788999999999999999886653

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.53  E-value=5.3e-14  Score=114.61  Aligned_cols=102  Identities=17%  Similarity=0.274  Sum_probs=82.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~  170 (278)
                      ..++.+|||+|||+|.++..+++. | ..+|+|+|+|+.+++.++++++..  +++.++++|+.+..    .+++||+|+
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEE
Confidence            457789999999999999999976 3 258999999999999999988765  57999999998732    346899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.+         .+.....++.++.++|||||.+++..
T Consensus       149 ~~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          149 EDVA---------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             ECCC---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCC---------CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7644         12244455799999999999998873

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.53  E-value=2.3e-14  Score=117.72  Aligned_cols=113  Identities=18%  Similarity=0.288  Sum_probs=90.8

Q ss_pred             cchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--c
Q 023703           88 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--L  162 (278)
Q Consensus        88 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--~  162 (278)
                      ..++..+....++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|+++++..++. +++++.+|+.+..  .
T Consensus        59 ~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           59 GQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNL  138 (237)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            334444444556789999999999999999886 2 358999999999999999999988885 4999999987642  2


Q ss_pred             ------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          163 ------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       163 ------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                            .++||+|+.....          .....+++.+.++|+|||++++...
T Consensus       139 ~~~~~~~~~fD~I~~d~~~----------~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVDADK----------PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             HHSTTCTTCEEEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             HhccCCCCCcCEEEECCch----------HHHHHHHHHHHHhcCCCeEEEEecC
Confidence                  4789999976432          2556788999999999999998764

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.53  E-value=2.7e-14  Score=123.21  Aligned_cols=110  Identities=17%  Similarity=0.149  Sum_probs=91.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.|++|++.+++ .++.++++|+.+..  ++||+|+++++..
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~  269 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKF  269 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTT
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHh
Confidence            5788999999999999999 87 566999999999999999999999988 46999999998865  7899999876542


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      .           ..++..+.++|+|||.+++.++....+.....+.
T Consensus       270 ~-----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~  304 (336)
T 2yx1_A          270 A-----------HKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFE  304 (336)
T ss_dssp             G-----------GGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHH
T ss_pred             H-----------HHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHH
Confidence            1           2456889999999999999877666444444444

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.53  E-value=5.1e-15  Score=120.60  Aligned_cols=110  Identities=13%  Similarity=0.112  Sum_probs=78.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCC-hHHHHHH---HHHhhhCCCcceEEEEccccCCcc--CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYS-EDAINLA---QSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s-~~~i~~a---~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~  170 (278)
                      .++.+|||||||+|.++..++.. +..+|+|+|+| +.+++.|   ++++...+++++.+.++|+.+.+.  .+.+|.+.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            46779999999999999999964 23489999999 6666666   888877888889999999988742  24455555


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.++.....+  .......+++++.++|||||.+++..
T Consensus       103 ~~~~~~~~~~~--~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A          103 ILFPWGTLLEY--VIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             EESCCHHHHHH--HHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EeCCCcHHhhh--hhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            44332211000  00012356799999999999999943

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.53  E-value=3e-14  Score=118.22  Aligned_cols=105  Identities=17%  Similarity=0.172  Sum_probs=87.3

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhC-CCcceEEEEccccCCcc-CCCccEEEe
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL-ERQFQLVMD  171 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~~~-~~~fD~v~~  171 (278)
                      ...++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|+++++.. +.+++.+..+|+.+.+. +++||+|++
T Consensus        93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~  172 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL  172 (258)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE
Confidence            4567889999999999999999987 4 358999999999999999998877 65679999999988743 578999997


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +..            +...+++++.++|+|||.+++..+..
T Consensus       173 ~~~------------~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          173 DLM------------EPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             ESS------------CGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             CCc------------CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            321            22345689999999999999988765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.53  E-value=4.6e-14  Score=116.52  Aligned_cols=115  Identities=15%  Similarity=0.130  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhC--------CCcceEEEEccccCC-c--c-CC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRD--------GFSCIKFLVDDVLDT-K--L-ER  164 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~--------~~~~~~~~~~d~~~~-~--~-~~  164 (278)
                      .++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|++++..+        ++.++.++++|+.+. +  . .+
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            4667999999999999999998753 48999999999999999998765        777899999999873 2  2 46


Q ss_pred             CccEEEeCCccceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          165 QFQLVMDKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .+|.|+...+-.... -+.........+++++.++|+|||.+++.+...
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~  176 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK  176 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence            788887432110000 000000011467799999999999999976543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.53  E-value=6.4e-14  Score=115.50  Aligned_cols=104  Identities=22%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCc-cCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~-~~~~fD~v~~~~  173 (278)
                      ...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++....++ +++++..+|+.+.. .+++||+|+++.
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  166 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV  166 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC
Confidence            3457889999999999999999988 45999999999999999999988877 56999999998865 557899999843


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .            +...+++++.++|+|||.+++..++.
T Consensus       167 ~------------~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          167 R------------EPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             S------------CGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             c------------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            2            22344588999999999999998764

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.53  E-value=7.5e-14  Score=120.31  Aligned_cols=108  Identities=18%  Similarity=0.196  Sum_probs=90.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      +..+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++ +++++..+|+.+. .+.+||+|++..+++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~p~~~D~v~~~~vlh  246 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP-LPAGAGGYVLSAVLH  246 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCSCSEEEEESCGG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC-CCCCCcEEEEehhhc
Confidence            4579999999999999999886 3348999999 9999999999988776 4699999999843 334899999998887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++.     ......++++++++|+|||++++.+...+
T Consensus       247 ~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  278 (332)
T 3i53_A          247 DWD-----DLSAVAILRRCAEAAGSGGVVLVIEAVAG  278 (332)
T ss_dssp             GSC-----HHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred             cCC-----HHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence            664     33467889999999999999999876444

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.53  E-value=1.1e-13  Score=121.18  Aligned_cols=105  Identities=12%  Similarity=0.088  Sum_probs=87.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-Ccc--CCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKL--ERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~~~--~~~fD~v~~~~  173 (278)
                      .++.+|||+| |+|.++..++..+. .+|+++|+|+.+++.|+++++.+++.+++++++|+.+ .+.  +++||+|++++
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            3678999999 99999999988764 5899999999999999999998887789999999988 442  46899999998


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcE-EEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGL-LVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-l~~~~~~  211 (278)
                      ++...        ....+++++.++|+|||+ ++++...
T Consensus       250 p~~~~--------~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          250 PETLE--------AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CSSHH--------HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             CCchH--------HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            76432        246788999999999994 4555554

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.52  E-value=2.5e-14  Score=116.60  Aligned_cols=111  Identities=16%  Similarity=0.232  Sum_probs=89.2

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc----
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL----  162 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~----  162 (278)
                      ++..+....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|+++++..++ .+++++++|+.+...    
T Consensus        60 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~  139 (229)
T 2avd_A           60 LLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLA  139 (229)
T ss_dssp             HHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHh
Confidence            4444444567789999999999999999986 2 35899999999999999999998887 469999999876421    


Q ss_pred             C---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          163 E---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       163 ~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .   ++||+|+++...          .....+++.+.++|+|||.+++...
T Consensus       140 ~~~~~~~D~v~~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          140 AGEAGTFDVAVVDADK----------ENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             TTCTTCEEEEEECSCS----------TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCccEEEECCCH----------HHHHHHHHHHHHHcCCCeEEEEECC
Confidence            1   689999986542          2456677999999999999999754

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.52  E-value=4.1e-14  Score=118.85  Aligned_cols=105  Identities=17%  Similarity=0.227  Sum_probs=87.5

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      ...++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|+++++..++ +++.+..+|+.+...+++||+|+++
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~  188 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD  188 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEEC
Confidence            4467889999999999999999987 4 35899999999999999999988887 5699999999876445789999985


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .+            ....+++++.++|+|||.+++..+..
T Consensus       189 ~~------------~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (277)
T 1o54_A          189 VP------------DPWNYIDKCWEALKGGGRFATVCPTT  216 (277)
T ss_dssp             CS------------CGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             Cc------------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            32            22345688999999999999988754

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.52  E-value=7.7e-14  Score=122.15  Aligned_cols=107  Identities=19%  Similarity=0.234  Sum_probs=89.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++...++. +++++.+|+.+. .+..||+|++..+
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~D~v~~~~v  257 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LPVTADVVLLSFV  257 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCCEEEEEEESC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc-CCCCCCEEEEecc
Confidence            3567899999999999999999873 348999999 99999999999888775 699999999863 3345999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++++.     ......+++++.++|+|||++++.+.
T Consensus       258 l~~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          258 LLNWS-----DEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             GGGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCC-----HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            87653     33445788999999999999998876

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.52  E-value=3.5e-14  Score=118.59  Aligned_cols=106  Identities=16%  Similarity=0.258  Sum_probs=82.0

Q ss_pred             CCCeEEEEecCCCH----HHHHHhhC-C----CCcEEEEeCChHHHHHHHHHhhh-----------------------CC
Q 023703           99 SSWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANR-----------------------DG  146 (278)
Q Consensus        99 ~~~~vLDiGcG~G~----~~~~l~~~-~----~~~v~~~D~s~~~i~~a~~~~~~-----------------------~~  146 (278)
                      ++.+|||+|||||.    +++.+++. +    ..+|+|+|+|+.+++.|+++...                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35699999999998    56666654 3    13899999999999999987410                       01


Q ss_pred             -C-------cceEEEEccccCCcc--CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          147 -F-------SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       147 -~-------~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       .       .++.|.+.|+.+.+.  .++||+|+|..++.++.     +.....+++++.++|+|||.|++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-----~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-----KTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-----HHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-----HHHHHHHHHHHHHHhCCCcEEEEEe
Confidence             0       258999999998543  47899999998876553     4456788899999999999999853

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.51  E-value=2.5e-14  Score=117.10  Aligned_cols=113  Identities=19%  Similarity=0.211  Sum_probs=89.4

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc----c
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK----L  162 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~----~  162 (278)
                      ++..+....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|++++...++. +++++.+|+.+..    .
T Consensus        63 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~  142 (232)
T 3cbg_A           63 FLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ  142 (232)
T ss_dssp             HHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh
Confidence            4444444456779999999999999999987 2 248999999999999999999888775 4999999986531    1


Q ss_pred             -C--CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          163 -E--RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       163 -~--~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                       +  ++||+|++....          .....+++.+.++|+|||++++.....
T Consensus       143 ~~~~~~fD~V~~d~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          143 GKPLPEFDLIFIDADK----------RNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             SSSCCCEEEEEECSCG----------GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             cCCCCCcCEEEECCCH----------HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence             2  789999986542          255677899999999999999976543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.51  E-value=1.1e-13  Score=123.36  Aligned_cols=132  Identities=17%  Similarity=0.153  Sum_probs=100.6

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--c-CCCccEE
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLV  169 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--~-~~~fD~v  169 (278)
                      +....++.+|||+|||+|..+..++.... .+|+++|+++.+++.++++++..++ ++.++++|+.+..  . +++||+|
T Consensus       241 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~V  319 (429)
T 1sqg_A          241 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFDRI  319 (429)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             HcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCCCCEE
Confidence            34557788999999999999999998732 5899999999999999999998887 5899999998875  2 3689999


Q ss_pred             EeCCccceecc-C-CCCh------h-------hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhhh
Q 023703          170 MDKGTLDAIGL-H-PDGP------L-------KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLSQ  226 (278)
Q Consensus       170 ~~~~~~~~~~~-~-~~~~------~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~  226 (278)
                      +++.+...... . .+..      .       ....+++.+.++|||||++++++|+...++....+..+..
T Consensus       320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~  391 (429)
T 1sqg_A          320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ  391 (429)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred             EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHH
Confidence            98776543321 1 1110      1       1247789999999999999999988766555444444433

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.51  E-value=1.1e-13  Score=110.59  Aligned_cols=110  Identities=22%  Similarity=0.259  Sum_probs=80.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.     +++++++|+.+.+  ++||+|+++++++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~--~~~D~v~~~~p~~  121 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS--GKYDTWIMNPPFG  121 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC--CCEEEEEECCCC-
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC--CCeeEEEECCCch
Confidence            34678999999999999999999876579999999999999999874     6899999998753  7899999999987


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      +..-     .....+++++.+++  |+ +++.....+.......+
T Consensus       122 ~~~~-----~~~~~~l~~~~~~~--g~-~~~~~~~~~~~~~~~~~  158 (200)
T 1ne2_A          122 SVVK-----HSDRAFIDKAFETS--MW-IYSIGNAKARDFLRREF  158 (200)
T ss_dssp             -----------CHHHHHHHHHHE--EE-EEEEEEGGGHHHHHHHH
T ss_pred             hccC-----chhHHHHHHHHHhc--Cc-EEEEEcCchHHHHHHHH
Confidence            6641     12235678888888  44 44443333333333333

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.51  E-value=1.6e-13  Score=119.54  Aligned_cols=108  Identities=18%  Similarity=0.155  Sum_probs=90.5

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++...++.+ ++++.+|+.+.+.++ +|+|++..+
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~D~v~~~~v  265 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCRI  265 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-CSEEEEESC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-CCEEEEech
Confidence            3567899999999999999999872 348999999 999999999998887655 999999998865443 499999888


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.     ......+++++.++|+|||++++.+..
T Consensus       266 lh~~~-----d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          266 LYSAN-----EQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             GGGSC-----HHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             hccCC-----HHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            87664     334788899999999999999887744

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.51  E-value=8.9e-15  Score=118.44  Aligned_cols=109  Identities=12%  Similarity=0.082  Sum_probs=77.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHH----HHhhhCCCcceEEEEccccCCccC-CCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQ----SLANRDGFSCIKFLVDDVLDTKLE-RQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~----~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~  170 (278)
                      ..++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+.    ++....+++++.++++|+.+.+.. +. |.++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            3567899999999999999999983 358999999999888543    333345666899999999987654 33 6665


Q ss_pred             eCCccceec-cCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIG-LHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ...++.... -+.   .+...+++++.++|||||.+++..
T Consensus       104 ~~~~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          104 VLMPWGSLLRGVL---GSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EESCCHHHHHHHH---TSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEccchhhhhhhh---ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            322211110 000   022567799999999999999964

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.51  E-value=2.1e-14  Score=119.07  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=77.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCC---ccC----CCccEE
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT---KLE----RQFQLV  169 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~---~~~----~~fD~v  169 (278)
                      ++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++..+++.+ ++++++|+.+.   ...    ++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            5679999999999999988876 22589999999999999999999888765 99999997652   222    589999


Q ss_pred             EeCCccceeccC--C---C---ChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          170 MDKGTLDAIGLH--P---D---GPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       170 ~~~~~~~~~~~~--~---~---~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ++++++......  .   .   .......++..+.++|||||.+.+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            999887543200  0   0   0011234456777888888876554

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.50  E-value=2.1e-13  Score=119.23  Aligned_cols=108  Identities=16%  Similarity=0.185  Sum_probs=89.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++ +++++..+|+.+. .+..||+|++..+
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~p~~~D~v~~~~v  277 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET-IPDGADVYLIKHV  277 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC-CCSSCSEEEEESC
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC-CCCCceEEEhhhh
Confidence            345689999999999999999987 2348999999 9999999999988776 4599999999843 3348999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.     ......++++++++|+|||++++.+..
T Consensus       278 lh~~~-----d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          278 LHDWD-----DDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             GGGSC-----HHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             hccCC-----HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            87654     334457899999999999999997643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.50  E-value=1.7e-13  Score=111.52  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=78.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~  170 (278)
                      +.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.+.+..+..  .++.++++|+....    ..++||+|+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEE
Confidence            568899999999999999999886 3 348999999999876665554443  57999999998643    246899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.+.         +.....+...+.++|||||.++++.
T Consensus       152 ~d~a~---------~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          152 VDIAQ---------PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             ECCCC---------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecCCC---------hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            87543         1233344466777999999999874

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.50  E-value=1e-13  Score=121.36  Aligned_cols=113  Identities=18%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-CCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      ..++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|++++..+++ +++++.++|+.+.+. .++||+|++++
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            56788999999999999999999853 3899999999999999999999988 469999999998765 47899999999


Q ss_pred             ccceeccCCCChhh-HHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLK-RIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +|..-......... ...+++.+.++|  +|.+++.+++
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~  331 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE  331 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence            98543211222222 367778899988  5555555553

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.49  E-value=1.5e-13  Score=119.64  Aligned_cols=108  Identities=18%  Similarity=0.322  Sum_probs=89.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++++...++. +++++.+|+.+. .+..||+|++..+
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~D~v~~~~v  258 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPRKADAIILSFV  258 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSSCEEEEEEESC
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC-CCCCccEEEEccc
Confidence            3567899999999999999999873 348999999 99999999999888775 699999999863 3345999999888


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++++.     ......+++++.++|+|||++++.+..
T Consensus       259 l~~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          259 LLNWP-----DHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             GGGSC-----HHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccCCC-----HHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            87653     334467889999999999999998765

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.49  E-value=9.1e-14  Score=118.28  Aligned_cols=112  Identities=19%  Similarity=0.198  Sum_probs=84.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhh----CCCcceEEEEccccCCc---cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR----DGFSCIKFLVDDVLDTK---LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~----~~~~~~~~~~~d~~~~~---~~~~fD~v  169 (278)
                      .++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++..    ...++++++.+|+.+..   .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            45679999999999999999987 345899999999999999998742    12246999999998754   35789999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++.+....   +........+++++.++|||||++++...+.
T Consensus       174 i~d~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          174 IIDTTDPAG---PASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             EEECC------------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EECCCCccc---cchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            996554221   1111111577899999999999999986543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.48  E-value=7.2e-14  Score=108.76  Aligned_cols=113  Identities=21%  Similarity=0.301  Sum_probs=84.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------c-CCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-ERQ  165 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--------~-~~~  165 (278)
                      ..++.+|||+|||+|.++..+++. +. .+++++|+++ +++.          .++.+.++|+.+.+        . +++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCc
Confidence            457789999999999999999987 43 5899999999 6532          47899999998864        3 478


Q ss_pred             ccEEEeCCccceeccCCCChhh------HHHHHHHHHhcccCCcEEEEEecCCCh-HHHHHHHh
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLK------RIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEVS  222 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~  222 (278)
                      ||+|+++.++++....  ....      ...+++++.++|+|||.+++....... ......+.
T Consensus        89 ~D~i~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~  150 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTP--AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIR  150 (180)
T ss_dssp             EEEEEECCCCCCCSCH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHH
T ss_pred             eeEEEECCCccccCCC--ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHH
Confidence            9999998887654310  0111      157889999999999999998765544 33334333

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.48  E-value=4.6e-14  Score=130.02  Aligned_cols=108  Identities=22%  Similarity=0.313  Sum_probs=87.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~  174 (278)
                      .++.+|||||||+|.++..|++.|+ +|+|+|.|+.+|+.|+.++...+..++++.++++.++.   .+++||+|++.++
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            4667999999999999999999986 89999999999999999998877557999999998763   3578999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++|+. ++    .....+..+.+.|+++|..++....
T Consensus       144 ~ehv~-~~----~~~~~~~~~~~tl~~~~~~~~~~~~  175 (569)
T 4azs_A          144 FHHIV-HL----HGIDEVKRLLSRLADVTQAVILELA  175 (569)
T ss_dssp             HHHHH-HH----HCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred             hhcCC-CH----HHHHHHHHHHHHhccccceeeEEec
Confidence            99985 11    1122234566778888877766543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.48  E-value=1.4e-13  Score=115.76  Aligned_cols=110  Identities=21%  Similarity=0.307  Sum_probs=83.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC--C---------CcceEEEEccccCCcc-CCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--G---------FSCIKFLVDDVLDTKL-ERQ  165 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~--~---------~~~~~~~~~d~~~~~~-~~~  165 (278)
                      .++.+|||||||+|.++..+++++..+|+++|+++.+++.|++++ ..  +         .++++++.+|+.+... +++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            356799999999999999999886569999999999999999988 32  2         2469999999865322 578


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ||+|+++.+.. .  .+........+++.+.++|+|||++++...+
T Consensus       153 fD~Ii~d~~~~-~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          153 FDVIIADSTDP-V--GPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             EEEEEEECCCC-C-------TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eeEEEECCCCC-C--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            99999865431 1  1111111357789999999999999997543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.48  E-value=1.5e-13  Score=121.81  Aligned_cols=102  Identities=19%  Similarity=0.251  Sum_probs=82.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++++.+++. ++++++|+.+.... +||+|+++++..
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~-~fD~Vv~dPPr~  364 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK-GFDTVIVDPPRA  364 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT-TCSEEEECCCTT
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc-CCCEEEEcCCcc
Confidence            5677899999999999999999985 48999999999999999999988886 99999999886443 899999987753


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ...         ..+++.+. .|+|+|+++++...
T Consensus       365 g~~---------~~~~~~l~-~l~p~givyvsc~p  389 (425)
T 2jjq_A          365 GLH---------PRLVKRLN-REKPGVIVYVSCNP  389 (425)
T ss_dssp             CSC---------HHHHHHHH-HHCCSEEEEEESCH
T ss_pred             chH---------HHHHHHHH-hcCCCcEEEEECCh
Confidence            221         12334443 48999998887543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.48  E-value=9.7e-14  Score=116.63  Aligned_cols=105  Identities=21%  Similarity=0.305  Sum_probs=86.5

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhC-C--CcceEEEEccccCCcc-CCCccEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-G--FSCIKFLVDDVLDTKL-ERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~-~--~~~~~~~~~d~~~~~~-~~~fD~v  169 (278)
                      ...++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|++++... +  ..++.+.++|+.+... +++||+|
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v  175 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA  175 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEE
Confidence            4567889999999999999999985 2 358999999999999999998876 5  4579999999988654 5789999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++..            +...+++++.++|+|||.+++.+++.
T Consensus       176 ~~~~~------------~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          176 VLDML------------APWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             EEESS------------CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             EECCc------------CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            98422            22245689999999999999988764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.48  E-value=8.2e-13  Score=112.31  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=101.7

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  162 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~  162 (278)
                      +....+...+....++.+|||+|||+|..+..++..  +..+|+++|+++.+++.++++++..|+.++.++++|+.+...
T Consensus        88 d~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~  167 (309)
T 2b9e_A           88 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP  167 (309)
T ss_dssp             CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred             CHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc
Confidence            444445555556678899999999999999999885  335899999999999999999999998889999999987643


Q ss_pred             C----CCccEEEeCCccceecc---CCC----------Chh----hHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          163 E----RQFQLVMDKGTLDAIGL---HPD----------GPL----KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       163 ~----~~fD~v~~~~~~~~~~~---~~~----------~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      .    .+||.|+++.+......   +++          ...    ....+|..+.++|+ ||++++++|+...++....+
T Consensus       168 ~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v  246 (309)
T 2b9e_A          168 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVV  246 (309)
T ss_dssp             TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHH
T ss_pred             cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHH
Confidence            2    57999999876533321   111          111    12356778888887 99999999887665555444


Q ss_pred             hhh
Q 023703          222 SNL  224 (278)
Q Consensus       222 ~~~  224 (278)
                      ..+
T Consensus       247 ~~~  249 (309)
T 2b9e_A          247 RDA  249 (309)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.47  E-value=1.2e-13  Score=115.79  Aligned_cols=110  Identities=22%  Similarity=0.289  Sum_probs=85.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC--C--CcceEEEEccccCCc--cCCCccEEEe
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G--FSCIKFLVDDVLDTK--LERQFQLVMD  171 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~--~--~~~~~~~~~d~~~~~--~~~~fD~v~~  171 (278)
                      .+.+|||||||+|.++..++++ +..+|+++|+++.+++.|++++...  +  .++++++.+|+.+..  .+++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            5679999999999999999988 5569999999999999999987531  2  246999999987642  2578999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +.+.. .  .+........+++.+.++|+|||++++...+
T Consensus       155 d~~~~-~--~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          155 DSTEP-V--GPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             SCSSC-C--SCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCC-C--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            76532 1  1111112356779999999999999998654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.47  E-value=1.6e-14  Score=128.26  Aligned_cols=103  Identities=20%  Similarity=0.256  Sum_probs=82.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcce--EEEEccccCCcc-CCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI--KFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~--~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++    ++...  .+...+...++. +++||+|++..+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v  180 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANT  180 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECCh
Confidence            4678999999999999999999976 899999999999999875    22221  122233333222 588999999999


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++|+.       +...+++++.++|||||++++..++.
T Consensus       181 l~h~~-------d~~~~l~~~~r~LkpgG~l~i~~~~~  211 (416)
T 4e2x_A          181 LCHIP-------YVQSVLEGVDALLAPDGVFVFEDPYL  211 (416)
T ss_dssp             GGGCT-------THHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             HHhcC-------CHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            99886       77888999999999999999987653

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.47  E-value=1.6e-13  Score=114.57  Aligned_cols=98  Identities=19%  Similarity=0.266  Sum_probs=80.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++.     .++.+..+|+.+.+. +++||+|++..+.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence            46789999999999999999987 2348999999999999998864     468899999987654 5789999985442


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      .              .++++.++|||||.+++.+++...
T Consensus       159 ~--------------~l~~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          159 C--------------KAEELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             C--------------CHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             h--------------hHHHHHHhcCCCcEEEEEEcCHHH
Confidence            1              248899999999999999877643

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.46  E-value=2.1e-13  Score=108.20  Aligned_cols=114  Identities=12%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--------C----C
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------E----R  164 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~----~  164 (278)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+++..           ..++++++++|+.+...        .    +
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcC-CcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            3578899999999999999999984 589999999852           23579999999987541        1    4


Q ss_pred             CccEEEeCCccceeccCC----CChhhHHHHHHHHHhcccCCcEEEEEecCCChH-HHHHHHh
Q 023703          165 QFQLVMDKGTLDAIGLHP----DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD-ELVHEVS  222 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~  222 (278)
                      +||+|++++..+......    ........+++.+.++|||||.|++........ ++...+.
T Consensus        91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~  153 (191)
T 3dou_A           91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWR  153 (191)
T ss_dssp             SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHG
T ss_pred             cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHH
Confidence            899999987543221100    001123467788999999999999988766553 3444443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.46  E-value=2.5e-13  Score=115.14  Aligned_cols=113  Identities=15%  Similarity=0.199  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhh--CC--CcceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DG--FSCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~--~~--~~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      .++.+|||||||+|.++..++++ +..+|+++|+|+.+++.|++++..  .+  .++++++.+|+.+..  .+++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            34579999999999999999998 556999999999999999999754  12  257999999987632  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++.+...+  .+........+++.+.++|+|||++++...+.
T Consensus       169 ~d~~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  208 (296)
T 1inl_A          169 IDSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETEDP  208 (296)
T ss_dssp             EEC------------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EcCCCccc--CchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence            86432101  11111123577899999999999999986553

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.46  E-value=1.6e-13  Score=118.35  Aligned_cols=104  Identities=13%  Similarity=0.177  Sum_probs=87.0

Q ss_pred             CeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCcccee
Q 023703          101 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      .+|||+|||+|..+..+++. +..+++++|+ +.+++.|++++...++ ++++++.+|+.+ +.+++||+|++..+++++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v~~~~vl~~~  246 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSNGDIYLLSRIIGDL  246 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSSCSEEEEESCGGGC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCCCCEEEEchhccCC
Confidence            79999999999999999887 3348999999 9999999998876554 359999999987 345789999998888655


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .     ......+++++.++|+|||++++.+..
T Consensus       247 ~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          247 D-----EAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             C-----HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             C-----HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            3     335568889999999999999998643

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=1.6e-13  Score=116.39  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=84.4

Q ss_pred             CeEEEEecCCCHHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCccc
Q 023703          101 WSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGTLD  176 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~~~  176 (278)
                      .+|||||||+|.++..+++ .+..+|+++|+++.+++.|++++.....++++++.+|..+..   .+++||+|+++....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            4999999999999999998 433489999999999999999986544457999999998753   247899999864322


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .   ..........+++.++++|+|||++++.....
T Consensus       171 ~---~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~  203 (317)
T 3gjy_A          171 A---ITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH  203 (317)
T ss_dssp             S---CCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             c---ccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            1   11111223578899999999999999877543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.46  E-value=1e-13  Score=121.16  Aligned_cols=100  Identities=14%  Similarity=0.217  Sum_probs=83.4

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--C--------------
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--E--------------  163 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~--------------  163 (278)
                      +.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|++|++.+++++++++++|+.+...  .              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~  292 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK  292 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred             CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence            578999999999999999986 46899999999999999999999998889999999876421  1              


Q ss_pred             -CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          164 -RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       164 -~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                       .+||+|+.+++...+.             ..+.+.|+++|.+++.++++.
T Consensus       293 ~~~fD~Vv~dPPr~g~~-------------~~~~~~l~~~g~ivyvsc~p~  330 (369)
T 3bt7_A          293 SYQCETIFVDPPRSGLD-------------SETEKMVQAYPRILYISCNPE  330 (369)
T ss_dssp             GCCEEEEEECCCTTCCC-------------HHHHHHHTTSSEEEEEESCHH
T ss_pred             cCCCCEEEECcCccccH-------------HHHHHHHhCCCEEEEEECCHH
Confidence             2799999887764332             567777789999999988753

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.45  E-value=2.8e-13  Score=115.12  Aligned_cols=110  Identities=20%  Similarity=0.348  Sum_probs=82.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhh--CCC--cceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DGF--SCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~--~~~--~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      .++.+|||||||+|.++..++++ +..+|+++|+++.+++.|++++..  .++  ++++++.+|+.+..  .+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            45679999999999999999988 346899999999999999999765  222  46999999987632  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++.+.. .  .+........+++++.++|+|||++++...
T Consensus       174 ~d~~~~-~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          174 TDSSDP-M--GPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             EECC--------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCC-C--CcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            865432 1  111112235678999999999999999863

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.45  E-value=4.7e-13  Score=119.81  Aligned_cols=115  Identities=14%  Similarity=0.158  Sum_probs=91.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC--------------CCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ--------------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT  160 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~  160 (278)
                      ..++.+|||+|||+|.++..+++.              ...+++|+|+++.+++.|+.++...++.  ++.+.++|....
T Consensus       169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~  248 (445)
T 2okc_A          169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK  248 (445)
T ss_dssp             CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred             CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence            456779999999999999888764              1247999999999999999999888875  678999999887


Q ss_pred             ccCCCccEEEeCCccceeccCC----------CChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          161 KLERQFQLVMDKGTLDAIGLHP----------DGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       161 ~~~~~fD~v~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ....+||+|++|++|.......          +.......+++++.++|+|||++.++.++
T Consensus       249 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          249 EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            6666899999999986542111          01112357889999999999999888753

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.44  E-value=2.4e-13  Score=116.86  Aligned_cols=109  Identities=17%  Similarity=0.370  Sum_probs=84.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC--CC--cceEEEEccccCCc---cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK---LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~--~~--~~~~~~~~d~~~~~---~~~~fD~v  169 (278)
                      .++.+|||||||+|.++..++++ +..+|+++|+|+.+++.|++++...  ++  ++++++.+|+.+..   .+++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            45689999999999999999987 3458999999999999999998642  22  46999999987642   24789999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++..-.   .++........+++.+.++|+|||++++..
T Consensus       199 i~d~~~p---~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          199 IVDSSDP---IGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EECCCCT---TSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCCc---cCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9865311   111111124678899999999999999974

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.44  E-value=2.2e-13  Score=117.62  Aligned_cols=105  Identities=18%  Similarity=0.157  Sum_probs=82.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCC-----------CcceEEEEccccCCc-
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----------FSCIKFLVDDVLDTK-  161 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~-----------~~~~~~~~~d~~~~~-  161 (278)
                      ...++.+|||+|||+|.++..++.. |. .+|+++|+++.+++.|++++...+           ..+++++.+|+.+.. 
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence            4567889999999999999999987 53 589999999999999999987532           246999999998863 


Q ss_pred             --cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          162 --LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       162 --~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                        .+++||+|+++...            ...+++++.++|+|||.+++..+..
T Consensus       182 ~~~~~~fD~V~~~~~~------------~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          182 DIKSLTFDAVALDMLN------------PHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             ------EEEEEECSSS------------TTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             ccCCCCeeEEEECCCC------------HHHHHHHHHHhcCCCcEEEEEeCCH
Confidence              24679999985431            1114589999999999999887643

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.44  E-value=2.9e-13  Score=107.97  Aligned_cols=113  Identities=15%  Similarity=0.258  Sum_probs=79.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-C--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------------
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------------  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------------  161 (278)
                      .++.+|||+|||+|.++..+++. +  ..+|+|+|+|+.+           ..+++.++++|+.+..             
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~   89 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM   89 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccc
Confidence            56779999999999999999986 3  3589999999931           1246899999998765             


Q ss_pred             ------------c-CCCccEEEeCCccceeccCCCChh----hHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHH
Q 023703          162 ------------L-ERQFQLVMDKGTLDAIGLHPDGPL----KRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEV  221 (278)
Q Consensus       162 ------------~-~~~fD~v~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~  221 (278)
                                  . +++||+|+++..+++...+..+..    ....+++.+.++|||||.+++...... ..++...+
T Consensus        90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l  167 (201)
T 2plw_A           90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYL  167 (201)
T ss_dssp             --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHH
T ss_pred             cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHH
Confidence                        2 468999999876654211000010    112477899999999999999775543 33444433

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.44  E-value=2.2e-12  Score=114.96  Aligned_cols=102  Identities=17%  Similarity=0.217  Sum_probs=81.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~~  171 (278)
                      ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++++.+++.+++++++|+.+..     .+++||+|++
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~  362 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  362 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence            3567899999999999999999984 589999999999999999999998888999999998732     2368999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++.....          .+++.+.+ ++|+++++++..
T Consensus       363 dPPr~g~~----------~~~~~l~~-~~p~~ivyvsc~  390 (433)
T 1uwv_A          363 DPARAGAA----------GVMQQIIK-LEPIRIVYVSCN  390 (433)
T ss_dssp             CCCTTCCH----------HHHHHHHH-HCCSEEEEEESC
T ss_pred             CCCCccHH----------HHHHHHHh-cCCCeEEEEECC
Confidence            88764321          23344443 689887777643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.44  E-value=1e-12  Score=114.95  Aligned_cols=118  Identities=15%  Similarity=0.226  Sum_probs=93.4

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCC---------------------------------------CcEEEEeCChHHH
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAI  135 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~i  135 (278)
                      ....++..+||++||+|.+++.++..+.                                       .+|+|+|+++.++
T Consensus       190 ~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al  269 (384)
T 3ldg_A          190 SNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMV  269 (384)
T ss_dssp             TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred             hCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHH
Confidence            4456778999999999999998876421                                       2599999999999


Q ss_pred             HHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccC--CcEEEEEecCC
Q 023703          136 NLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP--GGLLVITSCNS  212 (278)
Q Consensus       136 ~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~~  212 (278)
                      +.|++|+..+|+.+ +++.++|+.+...+.+||+|++|++|..- +  ........+++.+.+.||+  ||.+++.+.+.
T Consensus       270 ~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~r-l--~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  346 (384)
T 3ldg_A          270 EIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGER-L--LDDKAVDILYNEMGETFAPLKTWSQFILTNDT  346 (384)
T ss_dssp             HHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTT-T--SCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred             HHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhc-c--CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence            99999999999865 99999999998777799999999998421 1  1223455566667777765  99999998876


Q ss_pred             ChH
Q 023703          213 TKD  215 (278)
Q Consensus       213 ~~~  215 (278)
                      ...
T Consensus       347 ~l~  349 (384)
T 3ldg_A          347 DFE  349 (384)
T ss_dssp             THH
T ss_pred             HHH
Confidence            543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.44  E-value=2.5e-13  Score=116.02  Aligned_cols=112  Identities=21%  Similarity=0.310  Sum_probs=85.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhh--CC---CcceEEEEccccCCc--cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DG---FSCIKFLVDDVLDTK--LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~--~~---~~~~~~~~~d~~~~~--~~~~fD~v  169 (278)
                      .++.+|||||||+|.++..++++ +..+|+++|+++.+++.|++++..  .+   .++++++.+|+.+..  .+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            35679999999999999999988 445899999999999999998764  22   257999999997742  35789999


Q ss_pred             EeCCccceecc-CCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          170 MDKGTLDAIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       170 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++.+... .. .+........+++.+.++|+|||++++...
T Consensus       156 i~d~~~~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          156 IIDLTDPV-GEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEECCCCB-STTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECCCCcc-cccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            99754322 00 111111136788999999999999998753

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.44  E-value=2.4e-13  Score=116.36  Aligned_cols=111  Identities=17%  Similarity=0.334  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC--C--CcceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G--FSCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~--~--~~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      .++.+|||||||+|.++..++++ +..+|+++|+|+.+++.|++++...  +  .++++++.+|+.+..  .+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            35679999999999999999988 4469999999999999999998652  2  246999999987642  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.. +.+  ++........+++.+.++|+|||++++...+
T Consensus       195 ~d~~-~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          195 VDSS-DPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EECC-CSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ECCc-CCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            8653 111  1111111257889999999999999998644

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.44  E-value=5.1e-13  Score=110.61  Aligned_cols=110  Identities=17%  Similarity=0.165  Sum_probs=82.9

Q ss_pred             CCeEEEEecCC--CHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCcc-
Q 023703          100 SWSVLDIGTGN--GLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ-  167 (278)
Q Consensus       100 ~~~vLDiGcG~--G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~fD-  167 (278)
                      ...|||||||+  +..+..+++.  +..+|+++|.|+.|++.|++++...+..++.++++|+.+...       .+.|| 
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence            35899999997  3344444432  335899999999999999999876543469999999988521       34565 


Q ss_pred             ----EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          168 ----LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       168 ----~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                          .|+++.+++++.    +......+++++.+.|+|||.|+++....+
T Consensus       159 ~~p~av~~~avLH~l~----d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          159 TRPVALTVIAIVHFVL----DEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             TSCCEEEEESCGGGSC----GGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             CCcchHHhhhhHhcCC----chhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence                588899998875    112256788999999999999999986654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.43  E-value=3.6e-13  Score=113.41  Aligned_cols=111  Identities=15%  Similarity=0.287  Sum_probs=85.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      .++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++...+    .++++++.+|+.+..  .+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            35679999999999999999987 34699999999999999999986532    257999999997642  257899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.+.. .  .+........+++.+.++|+|||++++...+
T Consensus       157 ~d~~~~-~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          157 VDSSDP-I--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EECCCT-T--TGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCC-C--CcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            864321 1  1111111157889999999999999998654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.42  E-value=6e-13  Score=116.65  Aligned_cols=118  Identities=17%  Similarity=0.225  Sum_probs=92.8

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCC---------------------------------------CcEEEEeCChHHH
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAI  135 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~i  135 (278)
                      ....++.+|||+|||+|.+++.++..+.                                       .+|+|+|+++.++
T Consensus       191 ~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai  270 (385)
T 3ldu_A          191 TPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESI  270 (385)
T ss_dssp             SCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHH
T ss_pred             hCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHH
Confidence            4456778999999999999998876521                                       3699999999999


Q ss_pred             HHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccC--CcEEEEEecCC
Q 023703          136 NLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP--GGLLVITSCNS  212 (278)
Q Consensus       136 ~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~~  212 (278)
                      +.|++|+..+++. ++++.++|+.+...+++||+|++|++|..-.   ........+.+.+.+.|++  ||.+++.+.+.
T Consensus       271 ~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl---~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  347 (385)
T 3ldu_A          271 DIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERL---EDKDSVKQLYKELGYAFRKLKNWSYYLITSYE  347 (385)
T ss_dssp             HHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSH---HHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCcc---CCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence            9999999999886 5999999999987778999999999984211   0112344566667777766  99999888876


Q ss_pred             ChH
Q 023703          213 TKD  215 (278)
Q Consensus       213 ~~~  215 (278)
                      ...
T Consensus       348 ~l~  350 (385)
T 3ldu_A          348 DFE  350 (385)
T ss_dssp             THH
T ss_pred             HHH
Confidence            544

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.42  E-value=8.6e-13  Score=115.86  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=91.4

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCC---------------------------------------CcEEEEeCChHHH
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAI  135 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~i  135 (278)
                      ....++.+|||++||+|.+++.++..+.                                       .+|+|+|+++.++
T Consensus       197 ~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al  276 (393)
T 3k0b_A          197 TSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLI  276 (393)
T ss_dssp             SCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred             hCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHH
Confidence            4456778999999999999988876521                                       2599999999999


Q ss_pred             HHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccC--CcEEEEEecCC
Q 023703          136 NLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAP--GGLLVITSCNS  212 (278)
Q Consensus       136 ~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp--gG~l~~~~~~~  212 (278)
                      +.|++|+..+|+.+ +++.++|+.+...+.+||+|++|++|..-.   ........+.+.+.+.||+  ||.+++.+.+.
T Consensus       277 ~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl---~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  353 (393)
T 3k0b_A          277 EIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERL---EDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE  353 (393)
T ss_dssp             HHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSH---HHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred             HHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCcccc---CCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            99999999999864 999999999987777999999999984211   0012334455666666665  99999988876


Q ss_pred             ChH
Q 023703          213 TKD  215 (278)
Q Consensus       213 ~~~  215 (278)
                      ...
T Consensus       354 ~l~  356 (393)
T 3k0b_A          354 LFE  356 (393)
T ss_dssp             THH
T ss_pred             HHH
Confidence            544

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.41  E-value=1.1e-12  Score=105.78  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=84.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .++.+|||||||+|.++..+.  +...|+|+|+++.+++.+++++..++ .+..+.++|....+++++||++++.-++++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            467799999999999999988  44699999999999999999998888 478999999998888889999999988877


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.-     ...... -++.+.|+++|+++...
T Consensus       181 LE~-----q~~~~~-~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          181 LER-----EQAGSA-MALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHH-----HSTTHH-HHHHHHCBCSEEEEEEE
T ss_pred             hhh-----hchhhH-HHHHHHhcCCCEEEEcC
Confidence            631     111222 36777999998776654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.41  E-value=1.1e-13  Score=115.97  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=77.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh-hCCC-cceEEE--EccccCCccCCCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-RDGF-SCIKFL--VDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~-~~~~~~--~~d~~~~~~~~~fD~v~~~  172 (278)
                      ..++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..++++.. .... .++.++  ++|+.+++ +++||+|+++
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~Vvsd  155 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQADTVLCD  155 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCCSEEEEC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCcCEEEEC
Confidence            357789999999999999999998  4899999999 4333322110 0001 168899  99998765 6789999997


Q ss_pred             CccceeccCC-CChhhHHHHHHHHHhcccCCc--EEEEEecCCChH
Q 023703          173 GTLDAIGLHP-DGPLKRIMYWDSVSKLVAPGG--LLVITSCNSTKD  215 (278)
Q Consensus       173 ~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~  215 (278)
                      .. .... ++ ........+++.+.++|||||  .+++....+...
T Consensus       156 ~~-~~~~-~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~  199 (276)
T 2wa2_A          156 IG-ESNP-TAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSC  199 (276)
T ss_dssp             CC-CCCS-CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSH
T ss_pred             CC-cCCC-chhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCch
Confidence            65 2221 11 000111236789999999999  999877665444

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.41  E-value=3.8e-13  Score=108.50  Aligned_cols=107  Identities=17%  Similarity=0.236  Sum_probs=81.3

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccE
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQL  168 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~  168 (278)
                      ++..+....++.+|||+|||+|.++..++    .+++|+|+|+.               ++.+.++|+.+.+. +++||+
T Consensus        58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~  118 (215)
T 2zfu_A           58 IARDLRQRPASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDV  118 (215)
T ss_dssp             HHHHHHTSCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEE
T ss_pred             HHHHHhccCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeE
Confidence            44444444577899999999999998883    47999999988               35678899988654 578999


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC---ChHHHHHHHhh
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS---TKDELVHEVSN  223 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~~~  223 (278)
                      |++..++++ .       +...+++++.++|+|||.+++.+...   +..++...+..
T Consensus       119 v~~~~~l~~-~-------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~  168 (215)
T 2zfu_A          119 AVFCLSLMG-T-------NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTK  168 (215)
T ss_dssp             EEEESCCCS-S-------CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             EEEehhccc-c-------CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHH
Confidence            999877742 1       56778899999999999999987543   44555555543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.41  E-value=4.3e-13  Score=114.38  Aligned_cols=111  Identities=21%  Similarity=0.364  Sum_probs=82.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC--CC--cceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~--~~--~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      .++.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++...  ++  ++++++.+|+.+..  .+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            35679999999999999999987 3469999999999999999998653  22  46999999997642  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.. +.+  .+........+++.+.++|+|||++++...+
T Consensus       187 ~d~~-~~~--~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~  224 (314)
T 2b2c_A          187 TDSS-DPV--GPAESLFGQSYYELLRDALKEDGILSSQGES  224 (314)
T ss_dssp             ECCC----------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCC-CCC--CcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence            8653 222  1111111257889999999999999998643

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.41  E-value=1.1e-13  Score=115.25  Aligned_cols=112  Identities=12%  Similarity=-0.004  Sum_probs=78.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHh---hhCCCcceEEE--EccccCCccCCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA---NRDGFSCIKFL--VDDVLDTKLERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~---~~~~~~~~~~~--~~d~~~~~~~~~fD~v~~  171 (278)
                      ..++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..+++..   ...+ .++.++  ++|+.+.+ +++||+|++
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~-~~~fD~V~s  146 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP-VERTDVIMC  146 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC-CCCCSEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC-CCCCcEEEE
Confidence            457889999999999999999998  4899999999 433222110   0111 168899  99998865 678999999


Q ss_pred             CCccceeccCC-CChhhHHHHHHHHHhcccCCc--EEEEEecCCChH
Q 023703          172 KGTLDAIGLHP-DGPLKRIMYWDSVSKLVAPGG--LLVITSCNSTKD  215 (278)
Q Consensus       172 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG--~l~~~~~~~~~~  215 (278)
                      +.. +... ++ .+......+++.+.++|||||  .+++....+...
T Consensus       147 d~~-~~~~-~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~  191 (265)
T 2oxt_A          147 DVG-ESSP-KWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSV  191 (265)
T ss_dssp             CCC-CCCS-CHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSH
T ss_pred             eCc-ccCC-ccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCCh
Confidence            765 2221 11 000111237789999999999  999987665444

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.40  E-value=4.8e-13  Score=108.97  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||||||+|-++..++.. +..+|+++|+++.+++.++.++..+|+ +.++.+.|.....+.++||+++++-+++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDRLDEPADVTLLLKTLP  209 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccCCCCCcchHHHHHHHH
Confidence            45679999999999999999887 556999999999999999999999987 4899999999888889999999999988


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.     .......+ ++.+.|+|+|+++...
T Consensus       210 ~Le-----~q~kg~g~-~ll~aL~~~~vvVSfp  236 (281)
T 3lcv_B          210 CLE-----TQQRGSGW-EVIDIVNSPNIVVTFP  236 (281)
T ss_dssp             HHH-----HHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred             Hhh-----hhhhHHHH-HHHHHhCCCCEEEecc
Confidence            774     11122344 7999999999887653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.40  E-value=4.7e-13  Score=106.26  Aligned_cols=114  Identities=18%  Similarity=0.253  Sum_probs=79.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CC---------CcEEEEeCChHHHHHHHHHhhhCCCcceEEE-EccccCCc----
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GF---------SDLTGVDYSEDAINLAQSLANRDGFSCIKFL-VDDVLDTK----  161 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~---------~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~-~~d~~~~~----  161 (278)
                      +.++.+|||+|||+|.++..+++. +.         .+|+|+|+|+.+           ...++.++ .+|+....    
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence            356789999999999999999987 43         589999999842           22468888 89987643    


Q ss_pred             -----cCCCccEEEeCCccceeccCCCCh----hhHHHHHHHHHhcccCCcEEEEEecCCCh-HHHHHHH
Q 023703          162 -----LERQFQLVMDKGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHEV  221 (278)
Q Consensus       162 -----~~~~fD~v~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~  221 (278)
                           .+++||+|+++..++....+..+.    .....+++++.++|||||.+++....... .++...+
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l  158 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRL  158 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHH
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHH
Confidence                 135899999987654321100000    01146789999999999999998765543 3334333

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.39  E-value=3.1e-13  Score=114.81  Aligned_cols=110  Identities=11%  Similarity=0.084  Sum_probs=76.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeC----ChHHHHHHHHHhhhCCCcceEEEEc-cccCCccCCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY----SEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~----s~~~i~~a~~~~~~~~~~~~~~~~~-d~~~~~~~~~fD~v~~  171 (278)
                      ..++.+|||+|||+|.++..+++.  .+|+|+|+    ++.+++.+.  .+..+.+++.++++ |+...+ .++||+|++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~-~~~fD~V~s  154 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP-PERCDTLLC  154 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC-CCCCSEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC-cCCCCEEEE
Confidence            356789999999999999999998  37999999    564442211  11122256899999 888764 568999999


Q ss_pred             CCccceeccCC-CChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          172 KGTLDAIGLHP-DGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       172 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +..+. .. +. .+......++..+.++|||||.|++......
T Consensus       155 d~~~~-~g-~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~  195 (305)
T 2p41_A          155 DIGES-SP-NPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY  195 (305)
T ss_dssp             CCCCC-CS-SHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred             CCccc-cC-cchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            87653 11 11 0011122567889999999999998776553

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.39  E-value=3.1e-13  Score=113.32  Aligned_cols=96  Identities=11%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceE-EEEccccCCc---cC-CCccEEEeC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVDDVLDTK---LE-RQFQLVMDK  172 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~-~~~~d~~~~~---~~-~~fD~v~~~  172 (278)
                      .++.+|||+|||||.++..+++.|..+|+|+|+|+.|++.+.++.     +++. +...++....   .+ .+||+|+++
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d  158 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-----DRVRSMEQYNFRYAEPVDFTEGLPSFASID  158 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-----TTEEEECSCCGGGCCGGGCTTCCCSEEEEC
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cccceecccCceecchhhCCCCCCCEEEEE
Confidence            457799999999999999999998779999999999999854421     2322 2233443332   12 349999987


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .+|.++          ..++.++.++|+|||.+++.
T Consensus       159 ~sf~sl----------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          159 VSFISL----------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CSSSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred             eeHhhH----------HHHHHHHHHHcCcCCEEEEE
Confidence            776533          34568999999999999887

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.39  E-value=9.8e-13  Score=110.85  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=68.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...+. ++++++++|+.+.+.+ .||+|+++.++
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-~fD~vv~nlpy  103 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTCVANLPY  103 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CCSEEEEECCG
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-hhcEEEEecCc
Confidence            35678999999999999999999864 899999999999999999877665 4799999999876544 79999998877


Q ss_pred             ce
Q 023703          176 DA  177 (278)
Q Consensus       176 ~~  177 (278)
                      +.
T Consensus       104 ~~  105 (285)
T 1zq9_A          104 QI  105 (285)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.39  E-value=2.7e-13  Score=111.23  Aligned_cols=98  Identities=17%  Similarity=0.213  Sum_probs=77.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-----CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC---c-cC-CCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---K-LE-RQFQ  167 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~---~-~~-~~fD  167 (278)
                      .++.+|||||||+|..+..+++.     +..+|+++|+|+.+++.|+.    .. .+++++++|+.+.   + .. .+||
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~-~~v~~~~gD~~~~~~l~~~~~~~fD  154 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM-ENITLHQGDCSDLTTFEHLREMAHP  154 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC-TTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC-CceEEEECcchhHHHHHhhccCCCC
Confidence            35679999999999999999875     23589999999999998872    12 4799999999884   3 23 3799


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHh-cccCCcEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSK-LVAPGGLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~  210 (278)
                      +|++...  +    .    ....++.++.+ +|||||++++.+.
T Consensus       155 ~I~~d~~--~----~----~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          155 LIFIDNA--H----A----NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             EEEEESS--C----S----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             EEEECCc--h----H----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            9997554  1    1    44567789997 9999999999754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.39  E-value=4.3e-13  Score=111.50  Aligned_cols=99  Identities=12%  Similarity=0.063  Sum_probs=80.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      .+.+|||||||+|.++..+++++ .+|+++|+++.+++.|++++...    .-++++++.+|..+..  ++||+|+++..
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~  148 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE  148 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC
Confidence            45799999999999999999886 79999999999999999876431    1246999999998765  78999998631


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                                  +...+++.+.++|+|||++++...+.
T Consensus       149 ------------dp~~~~~~~~~~L~pgG~lv~~~~~~  174 (262)
T 2cmg_A          149 ------------PDIHRIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_dssp             ------------CCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             ------------ChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence                        11237799999999999999976443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.37  E-value=8e-14  Score=113.95  Aligned_cols=98  Identities=11%  Similarity=0.107  Sum_probs=66.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC---CcceEEEE-ccccCCccCCCccEEEeCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG---FSCIKFLV-DDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~---~~~~~~~~-~d~~~~~~~~~fD~v~~~~  173 (278)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+.+++.++++.....   ..++.+.. .|+..    ..||.+....
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~~~D~  111 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ----GRPSFTSIDV  111 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS----CCCSEEEECC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc----CCCCEEEEEE
Confidence            4567999999999999999999976699999999999999877542210   00111111 11111    1245554443


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++..+          ..++.++.++|||||.+++..
T Consensus       112 v~~~l----------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          112 SFISL----------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             SSSCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EhhhH----------HHHHHHHHHhccCCCEEEEEE
Confidence            33222          346699999999999999864

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.37  E-value=1.6e-12  Score=113.64  Aligned_cols=101  Identities=13%  Similarity=0.188  Sum_probs=81.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++      ++++++.+|+.+ +.+.. |+|++..++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p~~-D~v~~~~vl  271 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GVPKG-DAIFIKWIC  271 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC-SEEEEESCG
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CCCCC-CEEEEechh
Confidence            445689999999999999999886 3348999999 8888777532      479999999987 33333 999998888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++.     ..+...++++++++|+|||++++.+..
T Consensus       272 h~~~-----~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          272 HDWS-----DEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             GGBC-----HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             hcCC-----HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            7664     345668899999999999999998754

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.36  E-value=4.9e-13  Score=116.77  Aligned_cols=100  Identities=20%  Similarity=0.152  Sum_probs=82.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC---------------CCcceEEEEccccCCcc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD---------------GFSCIKFLVDDVLDTKL  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~---------------~~~~~~~~~~d~~~~~~  162 (278)
                      ++.+|||+|||+|..++.++.. +..+|+++|+++.+++.+++|++.+               ++.+++++++|+.+...
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999987 5558999999999999999999998               87669999999977532


Q ss_pred             --CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          163 --ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 --~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                        .++||+|+.++..           ....+++.+.+.|+|||+++++.
T Consensus       127 ~~~~~fD~I~lDP~~-----------~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDPFG-----------SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECCSS-----------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCCCC-----------CHHHHHHHHHHhcCCCCEEEEEe
Confidence              4579999976532           12356688999999999877764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.36  E-value=5.1e-12  Score=109.73  Aligned_cols=106  Identities=18%  Similarity=0.149  Sum_probs=86.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .+..+|+|||||+|.++..++++ +..+++..|. |.+++.|+++....+.++++++.+|+++.+. ..+|+++...+++
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-~~~D~~~~~~vlh  255 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-PEADLYILARVLH  255 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-CCCSEEEEESSGG
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-CCceEEEeeeecc
Confidence            45569999999999999999987 3347888886 8899999998876666689999999987543 4589999988876


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ...     ..+...+|++++++|+|||++++.+.
T Consensus       256 ~~~-----d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          256 DWA-----DGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             GSC-----HHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             cCC-----HHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            553     44567889999999999999999874

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.35  E-value=1.4e-12  Score=113.15  Aligned_cols=104  Identities=13%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..++.+|||||||+|.++..+++. +..+++++|+ +.++.  +++....+. ++++++.+|+.+. .+ +||+|++..+
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~-~p-~~D~v~~~~v  256 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE-VP-HADVHVLKRI  256 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC-CC-CCSEEEEESC
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC-CC-CCcEEEEehh
Confidence            346779999999999999999886 3347999999 44444  333322232 3599999999743 33 8999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++++.     ..+...++++++++|||||++++.+.
T Consensus       257 lh~~~-----d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          257 LHNWG-----DEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             GGGSC-----HHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             ccCCC-----HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            87664     33447889999999999999999864

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.35  E-value=1.3e-12  Score=114.29  Aligned_cols=99  Identities=18%  Similarity=0.258  Sum_probs=80.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++      .++++++.+|+.+ +.+. ||+|++..++
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~-~D~v~~~~~l  277 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SVPQ-GDAMILKAVC  277 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCC-EEEEEEESSG
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CCCC-CCEEEEeccc
Confidence            4567899999999999999999873 347899999 999887764      1469999999987 4444 9999999888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +++.     ......++++++++|+|||++++.+
T Consensus       278 h~~~-----d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          278 HNWS-----DEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCC-----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7664     2344588999999999999999975

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.34  E-value=2.1e-12  Score=112.60  Aligned_cols=101  Identities=13%  Similarity=0.204  Sum_probs=81.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++.      ++++++.+|+.+ +.+.. |+|++..++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-D~v~~~~vl  269 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFK-EVPSG-DTILMKWIL  269 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC-SEEEEESCG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCC-CCCCC-CEEEehHHh
Confidence            456789999999999999999886 3348999999 8888776541      479999999987 43333 999998887


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +++.     ..+...++++++++|||||++++.+..
T Consensus       270 h~~~-----d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          270 HDWS-----DQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             ccCC-----HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            6653     446678899999999999999998644

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.34  E-value=3.8e-12  Score=107.95  Aligned_cols=78  Identities=21%  Similarity=0.283  Sum_probs=64.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++...+.++++++++|+.+.+. .+||+|+++.++.
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-~~~D~Vv~n~py~  117 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-PKFDVCTANIPYK  117 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC-CCCSEEEEECCGG
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc-ccCCEEEEcCCcc
Confidence            3567899999999999999999985 4899999999999999999987777789999999987654 4899999988875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.34  E-value=1.5e-12  Score=115.75  Aligned_cols=105  Identities=18%  Similarity=0.271  Sum_probs=82.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ++.+|||+|||+|.++..++++  +..+++|+|+++.+++.|         .++.++++|+.+....++||+|++|+++.
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~  109 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGEAFDLILGNPPYG  109 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSSCEEEEEECCCCC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCccCCCCEEEECcCcc
Confidence            4569999999999999999975  335899999999999877         36889999998876678999999999985


Q ss_pred             eeccC------CCCh----------------hhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          177 AIGLH------PDGP----------------LKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       177 ~~~~~------~~~~----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .....      ....                .....+++.+.++|+|||.+++..+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          110 IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             CBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            43210      0011                112367899999999999999987654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.33  E-value=1.7e-12  Score=112.59  Aligned_cols=95  Identities=24%  Similarity=0.305  Sum_probs=73.8

Q ss_pred             CCCeEEEEecC------CCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------C
Q 023703           99 SSWSVLDIGTG------NGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG------~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~  163 (278)
                      ++.+|||||||      +|..+..++..  +..+|+|+|+|+.+.      .   ..++++++++|+.+.+.       +
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~dlpf~~~l~~~d  286 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQNDAEFLDRIARRY  286 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEecccccchhhhhhccc
Confidence            56799999999      67667666654  335899999999972      1   12579999999988643       4


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++||+|+++.. ++.       .+...+++++.++|||||++++.+.
T Consensus       287 ~sFDlVisdgs-H~~-------~d~~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          287 GPFDIVIDDGS-HIN-------AHVRTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             CCEEEEEECSC-CCH-------HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred             CCccEEEECCc-ccc-------hhHHHHHHHHHHhcCCCeEEEEEec
Confidence            89999999754 222       3667888999999999999999753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.32  E-value=1.6e-12  Score=113.55  Aligned_cols=101  Identities=15%  Similarity=0.078  Sum_probs=83.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCcc---CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKL---ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~---~~~fD~v~  170 (278)
                      .++.+|||++||+|.+++.++.+  |+.+|+++|+++.+++.+++|++.+++.+  ++++++|+.+...   .++||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            35779999999999999999984  55689999999999999999999999876  9999999876432   46799999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .++ +.          ....++..+.+.|+|||+++++.
T Consensus       131 lDP-~g----------~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDP-FG----------TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECC-SS----------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECC-Cc----------CHHHHHHHHHHHhCCCCEEEEEe
Confidence            876 21          11346688999999999777765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.32  E-value=3.1e-12  Score=111.09  Aligned_cols=100  Identities=13%  Similarity=0.118  Sum_probs=81.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.      ++++++.+|+.+ +.+ .||+|++..+++
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p-~~D~v~~~~~lh  257 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------NNLTYVGGDMFT-SIP-NADAVLLKYILH  257 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------TTEEEEECCTTT-CCC-CCSEEEEESCGG
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------CCcEEEeccccC-CCC-CccEEEeehhhc
Confidence            45679999999999999999986 3348999999 9999887641      469999999976 333 399999998887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccC---CcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAP---GGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  211 (278)
                      ++.     ......++++++++|||   ||++++.+..
T Consensus       258 ~~~-----d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          258 NWT-----DKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             GSC-----HHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             cCC-----HHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            664     23444889999999999   9999998643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.31  E-value=1e-11  Score=113.07  Aligned_cols=127  Identities=14%  Similarity=0.073  Sum_probs=94.8

Q ss_pred             ccccchhhhccc---cCCCCeEEEEecCCCHHHHHHhhC----CCCcEEEEeCChHHHHHHHHHhhhCCC--cceEEEEc
Q 023703           85 DLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVD  155 (278)
Q Consensus        85 ~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~----~~~~v~~~D~s~~~i~~a~~~~~~~~~--~~~~~~~~  155 (278)
                      .....|+..+..   ..++.+|+|.+||+|.+...++..    +...++|+|+++.+++.|+.++..+|+  .++.+.++
T Consensus       204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~g  283 (542)
T 3lkd_A          204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNA  283 (542)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred             HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEec
Confidence            344444554442   346789999999999998887765    234899999999999999999988887  46889999


Q ss_pred             cccCC--c--cCCCccEEEeCCccceeccCC-----------------CChhhHHHHHHHHHhccc-CCcEEEEEecCC
Q 023703          156 DVLDT--K--LERQFQLVMDKGTLDAIGLHP-----------------DGPLKRIMYWDSVSKLVA-PGGLLVITSCNS  212 (278)
Q Consensus       156 d~~~~--~--~~~~fD~v~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~  212 (278)
                      |....  +  ...+||+|++|++|..- ...                 +....-..+++.+.+.|+ |||++.+..++.
T Consensus       284 DtL~~d~p~~~~~~fD~IvaNPPf~~~-~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          284 DTLDEDWPTQEPTNFDGVLMNPPYSAK-WSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             CTTTSCSCCSSCCCBSEEEECCCTTCC-CCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ceecccccccccccccEEEecCCcCCc-cccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            98875  2  25789999999998521 110                 001112358899999999 999998887654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.29  E-value=1.1e-11  Score=113.25  Aligned_cols=117  Identities=13%  Similarity=0.116  Sum_probs=89.5

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC----C---------------CCcEEEEeCChHHHHHHHHHhhhCCCcc-----eE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ----G---------------FSDLTGVDYSEDAINLAQSLANRDGFSC-----IK  151 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~----~---------------~~~v~~~D~s~~~i~~a~~~~~~~~~~~-----~~  151 (278)
                      ...++.+|||+|||+|.++..++..    +               ..+++|+|+++.+++.|+.++...++.+     +.
T Consensus       166 ~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~  245 (541)
T 2ar0_A          166 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA  245 (541)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred             ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCC
Confidence            3456789999999999999887653    1               1269999999999999999998888765     78


Q ss_pred             EEEccccCCcc--CCCccEEEeCCccceeccC-------CCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          152 FLVDDVLDTKL--ERQFQLVMDKGTLDAIGLH-------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       152 ~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +.++|......  ..+||+|++|++|......       .+.......+++.+.+.|+|||++.++.++.
T Consensus       246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            89999876532  4689999999998643211       0111223478899999999999998887543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.26  E-value=3.1e-12  Score=99.92  Aligned_cols=88  Identities=13%  Similarity=0.162  Sum_probs=73.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~  172 (278)
                      ..++.+|||+|||.               +++|+|+.+++.|+++...    ++++.++|+.+.+.    +++||+|++.
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEEEC
Confidence            46788999999985               2399999999999988642    48899999988754    5789999998


Q ss_pred             Ccccee-ccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          173 GTLDAI-GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+++++ .       +...++++++++|||||++++..+
T Consensus        71 ~~l~~~~~-------~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           71 LVPGSTTL-------HSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             CSTTCCCC-------CCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             Chhhhccc-------CHHHHHHHHHHHCCCCEEEEEEcc
Confidence            888776 3       346778999999999999999654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.25  E-value=2.9e-11  Score=113.60  Aligned_cols=120  Identities=20%  Similarity=0.137  Sum_probs=87.2

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCC-------------------------------------------CCcEEEEeCC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQG-------------------------------------------FSDLTGVDYS  131 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------------------------------~~~v~~~D~s  131 (278)
                      ....++.+|||++||+|.+++.++..+                                           ..+++|+|++
T Consensus       186 ~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did  265 (703)
T 3v97_A          186 SGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSD  265 (703)
T ss_dssp             TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESC
T ss_pred             hCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECC
Confidence            344567899999999999998877531                                           1379999999


Q ss_pred             hHHHHHHHHHhhhCCCcc-eEEEEccccCCccC---CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          132 EDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE---RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       132 ~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~---~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                      +.+++.|+.|+..+|+.+ +++.++|+.+...+   ++||+|++|++|..=.-...........+.++.+.+.|||.+++
T Consensus       266 ~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          266 ARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence            999999999999999876 99999999886432   38999999999842111111111222333445555568999999


Q ss_pred             EecCCCh
Q 023703          208 TSCNSTK  214 (278)
Q Consensus       208 ~~~~~~~  214 (278)
                      .+++...
T Consensus       346 lt~~~~l  352 (703)
T 3v97_A          346 FSASPDL  352 (703)
T ss_dssp             EESCHHH
T ss_pred             EeCCHHH
Confidence            8776543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.23  E-value=1.7e-11  Score=106.67  Aligned_cols=99  Identities=14%  Similarity=0.157  Sum_probs=80.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++      .++++++.+|+.+ +.+ .||+|++..+++
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~D~v~~~~vlh  262 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP-SADAVLLKWVLH  262 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC-CCSEEEEESCGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC-CceEEEEccccc
Confidence            356799999999999999999873 348999999 788877654      2469999999987 433 499999998887


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccC---CcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAP---GGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  210 (278)
                      ++.     ......++++++++|+|   ||++++.+.
T Consensus       263 ~~~-----d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          263 DWN-----DEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             GSC-----HHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             CCC-----HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            664     22445889999999999   999999764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.19  E-value=5.7e-11  Score=99.71  Aligned_cols=113  Identities=13%  Similarity=0.121  Sum_probs=76.5

Q ss_pred             cCCCCeEEEEecCC------CHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEE-EEccccCCccCCCcc
Q 023703           97 YLSSWSVLDIGTGN------GLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF-LVDDVLDTKLERQFQ  167 (278)
Q Consensus        97 ~~~~~~vLDiGcG~------G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~-~~~d~~~~~~~~~fD  167 (278)
                      ..++.+|||+|||+      |.  ..++.. + ..+|+|+|+|+. +            +++++ +++|+.+....++||
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~~~fD  125 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTANKWD  125 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCSSCEE
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCccCccc
Confidence            45788999999955      55  333332 3 248999999998 1            36788 999999876668899


Q ss_pred             EEEeCCccceec---cC-CCChhhHHHHHHHHHhcccCCcEEEEEecCC-ChHHHHHHHhhh
Q 023703          168 LVMDKGTLDAIG---LH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS-TKDELVHEVSNL  224 (278)
Q Consensus       168 ~v~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~~~~  224 (278)
                      +|+++.......   .+ .........+++.+.++|||||.|++..... ...++...+..+
T Consensus       126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~  187 (290)
T 2xyq_A          126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHF  187 (290)
T ss_dssp             EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTE
T ss_pred             EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHc
Confidence            999985432210   11 1122234577899999999999999976443 334555555543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.18  E-value=2.8e-11  Score=110.38  Aligned_cols=126  Identities=15%  Similarity=0.106  Sum_probs=88.7

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--------C--------CCcEEEEeCChHHHHHHHHHhhhCCCc
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--------G--------FSDLTGVDYSEDAINLAQSLANRDGFS  148 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~v~~~D~s~~~i~~a~~~~~~~~~~  148 (278)
                      .....|+..+. ..++ +|||.+||+|.+...++..        +        ...++|+|+++.+++.|+.++...++.
T Consensus       232 ~Vv~lmv~ll~-p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  309 (544)
T 3khk_A          232 SIVTLIVEMLE-PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID  309 (544)
T ss_dssp             HHHHHHHHHHC-CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHh-cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            33344444443 2333 9999999999998877542        0        237999999999999999999888764


Q ss_pred             -ceEEEEccccCCc--cCCCccEEEeCCccceecc----------------------CCCChhhHHHHHHHHHhcccCCc
Q 023703          149 -CIKFLVDDVLDTK--LERQFQLVMDKGTLDAIGL----------------------HPDGPLKRIMYWDSVSKLVAPGG  203 (278)
Q Consensus       149 -~~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~LkpgG  203 (278)
                       ++.+.++|....+  ...+||+|++|++|..-..                      -++.......+++.+.+.|+|||
T Consensus       310 ~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG  389 (544)
T 3khk_A          310 FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTG  389 (544)
T ss_dssp             CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEE
T ss_pred             cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCc
Confidence             2444788876654  2478999999999964210                      11111122368899999999999


Q ss_pred             EEEEEecCC
Q 023703          204 LLVITSCNS  212 (278)
Q Consensus       204 ~l~~~~~~~  212 (278)
                      ++.+..++.
T Consensus       390 r~aiVlP~g  398 (544)
T 3khk_A          390 SMALLLANG  398 (544)
T ss_dssp             EEEEEEETH
T ss_pred             eEEEEecch
Confidence            998887653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.17  E-value=5.9e-11  Score=100.00  Aligned_cols=78  Identities=23%  Similarity=0.331  Sum_probs=67.5

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ...++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++++...  ++++++++|+.+... +.+||.|+++.+
T Consensus        47 ~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~--~~v~vi~gD~l~~~~~~~~fD~Iv~NlP  123 (295)
T 3gru_A           47 NLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY--NNIEIIWGDALKVDLNKLDFNKVVANLP  123 (295)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC--SSEEEEESCTTTSCGGGSCCSEEEEECC
T ss_pred             CCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC--CCeEEEECchhhCCcccCCccEEEEeCc
Confidence            34567899999999999999999985 58999999999999999998733  579999999998765 357999999988


Q ss_pred             cc
Q 023703          175 LD  176 (278)
Q Consensus       175 ~~  176 (278)
                      +.
T Consensus       124 y~  125 (295)
T 3gru_A          124 YQ  125 (295)
T ss_dssp             GG
T ss_pred             cc
Confidence            75

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.14  E-value=3.2e-10  Score=93.65  Aligned_cols=76  Identities=20%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~  171 (278)
                      ..++.+|||||||+|.++..++..+ .+|+++|+++.+++.+++++..  .++++++++|+.+.++     .++|| |++
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~  102 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKTDKPLR-VVG  102 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCCSSCEE-EEE
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhccCCCeE-EEe
Confidence            4567899999999999999999996 5899999999999999999865  2579999999998764     24688 888


Q ss_pred             CCccc
Q 023703          172 KGTLD  176 (278)
Q Consensus       172 ~~~~~  176 (278)
                      |.+|.
T Consensus       103 NlPY~  107 (255)
T 3tqs_A          103 NLPYN  107 (255)
T ss_dssp             ECCHH
T ss_pred             cCCcc
Confidence            88774

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.14  E-value=1.6e-11  Score=101.77  Aligned_cols=81  Identities=16%  Similarity=0.112  Sum_probs=67.6

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCCh-------HHHHHHHHHhhhCCCcc-eEEEEccccCCc--cC--
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE-------DAINLAQSLANRDGFSC-IKFLVDDVLDTK--LE--  163 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~-------~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~--~~--  163 (278)
                      ...++.+|||+|||+|.++..++..+. +|+++|+|+       .+++.|+++.+.+++.+ ++++++|+.+..  ..  
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            445668999999999999999999874 899999999       99999999887776655 999999998742  22  


Q ss_pred             -CCccEEEeCCccce
Q 023703          164 -RQFQLVMDKGTLDA  177 (278)
Q Consensus       164 -~~fD~v~~~~~~~~  177 (278)
                       ++||+|++++++.+
T Consensus       159 ~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          159 QGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HCCCSEEEECCCC--
T ss_pred             CCCccEEEECCCCCC
Confidence             78999999988754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.14  E-value=1e-12  Score=108.33  Aligned_cols=103  Identities=16%  Similarity=0.211  Sum_probs=77.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC--CCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~fD~v~~~~~  174 (278)
                      ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++.  ...+++++++|+.+.+..  ++| .|+++.+
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~P  102 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNIP  102 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEECC
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeCC
Confidence            3567799999999999999999986 589999999999999988775  235799999999987643  578 7888877


Q ss_pred             cceeccCCCChhhHHH----------HH----HHHHhcccCCcEEEEEe
Q 023703          175 LDAIGLHPDGPLKRIM----------YW----DSVSKLVAPGGLLVITS  209 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~----------~l----~~~~~~LkpgG~l~~~~  209 (278)
                      +....     . ....          ++    +.+.++|+|||.+.+..
T Consensus       103 y~~~~-----~-~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          103 YHLST-----Q-IIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             SSSCH-----H-HHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             ccccH-----H-HHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            64321     0 1111          11    55788888888776654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.12  E-value=8e-11  Score=103.13  Aligned_cols=78  Identities=13%  Similarity=0.060  Sum_probs=68.2

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC--CCcceEEEEccccCCc-c--CCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTK-L--ERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~--~~~~~~~~~~d~~~~~-~--~~~fD~v~~~~  173 (278)
                      ++.+|||+|||+|..+..++..+ .+|+++|+|+.+++.|++|++.+  |+.+++++++|+.+.. .  .++||+|++++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP  171 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP  171 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence            47899999999999999999986 48999999999999999999987  7778999999998752 2  36899999998


Q ss_pred             ccce
Q 023703          174 TLDA  177 (278)
Q Consensus       174 ~~~~  177 (278)
                      ++..
T Consensus       172 Prr~  175 (410)
T 3ll7_A          172 ARRS  175 (410)
T ss_dssp             EEC-
T ss_pred             CCcC
Confidence            8753

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.11  E-value=8e-10  Score=90.85  Aligned_cols=75  Identities=15%  Similarity=0.273  Sum_probs=63.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC--CCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...  ++++++++|+.+.+..  ..| .|+++.++
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~--~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy  104 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSY-KIFGNIPY  104 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCC-EEEEECCG
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC--CCeEEEEChHHhCCcccCCCe-EEEEeCCc
Confidence            467899999999999999999986 58999999999999999988643  5799999999887653  345 57787777


Q ss_pred             c
Q 023703          176 D  176 (278)
Q Consensus       176 ~  176 (278)
                      .
T Consensus       105 ~  105 (244)
T 1qam_A          105 N  105 (244)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.09  E-value=2.8e-10  Score=93.75  Aligned_cols=75  Identities=13%  Similarity=0.223  Sum_probs=62.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCC---CccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER---QFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~---~fD~v~~~~  173 (278)
                      ..++.+|||||||+|.++..+++.+..+|+++|+++.+++.++++ .   ..+++++++|+.+.+.+.   .| .|++|.
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---~~~v~~i~~D~~~~~~~~~~~~~-~vv~Nl  103 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---DERLEVINEDASKFPFCSLGKEL-KVVGNL  103 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---CTTEEEECSCTTTCCGGGSCSSE-EEEEEC
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---CCCeEEEEcchhhCChhHccCCc-EEEEEC
Confidence            346789999999999999999999656999999999999999886 2   247999999999876542   34 777877


Q ss_pred             ccc
Q 023703          174 TLD  176 (278)
Q Consensus       174 ~~~  176 (278)
                      ++.
T Consensus       104 Py~  106 (249)
T 3ftd_A          104 PYN  106 (249)
T ss_dssp             CTT
T ss_pred             chh
Confidence            774

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.08  E-value=2.9e-10  Score=94.64  Aligned_cols=76  Identities=17%  Similarity=0.254  Sum_probs=65.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC--CCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~fD~v~~~~~  174 (278)
                      ..++ +|||||||+|.++..+++.+ .+|+++|+++.+++.+++++..   .+++++++|+.+...+  ..+|.|++|.+
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~~~~~~iv~NlP  119 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEVPQGSLLVANLP  119 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGSCTTEEEEEEEC
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhccCccEEEecCc
Confidence            3567 99999999999999999997 5899999999999999998763   4799999999987654  36899999888


Q ss_pred             cce
Q 023703          175 LDA  177 (278)
Q Consensus       175 ~~~  177 (278)
                      +..
T Consensus       120 y~i  122 (271)
T 3fut_A          120 YHI  122 (271)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            753

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.07  E-value=9.8e-10  Score=102.46  Aligned_cols=116  Identities=13%  Similarity=-0.005  Sum_probs=83.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC----CCcEEEEeCChHHHHHH--HHHhhh----CCCcceEEEEccccCCc--cCCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLA--QSLANR----DGFSCIKFLVDDVLDTK--LERQ  165 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~~D~s~~~i~~a--~~~~~~----~~~~~~~~~~~d~~~~~--~~~~  165 (278)
                      .++.+|||+|||+|.++..++...    ..+++|+|+++.+++.|  +.++..    .+.....+...|.....  ..++
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            457899999999999999998762    24799999999999999  666544    23333466677776532  3578


Q ss_pred             ccEEEeCCccceeccC----------------------CCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          166 FQLVMDKGTLDAIGLH----------------------PDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ||+|++|++|......                      .........+++.+.+.|+|||++.+..++.-
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY  469 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence            9999999999421100                      00011245678999999999999999877643

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.05  E-value=8.6e-10  Score=95.16  Aligned_cols=138  Identities=14%  Similarity=0.038  Sum_probs=102.0

Q ss_pred             cccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCC------cceEEEEcccc
Q 023703           86 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGF------SCIKFLVDDVL  158 (278)
Q Consensus        86 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~------~~~~~~~~d~~  158 (278)
                      ...++...+....+|.+|||+++|.|.=+.+++..+. ..|+++|+++.-++.++++++..+.      .++.+...|..
T Consensus       135 ~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~  214 (359)
T 4fzv_A          135 AASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR  214 (359)
T ss_dssp             GGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence            3444555556778999999999999999999988743 3799999999999999999987654      35788888987


Q ss_pred             CCc--cCCCccEEEeCCcccee--c-cC--CC-----Ch-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          159 DTK--LERQFQLVMDKGTLDAI--G-LH--PD-----GP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       159 ~~~--~~~~fD~v~~~~~~~~~--~-~~--~~-----~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      .+.  ..+.||.|+.+.+-..-  . ..  +.     ..       .....+|..+.+.|||||+|+.++|+-..+|...
T Consensus       215 ~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~  294 (359)
T 4fzv_A          215 KWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEY  294 (359)
T ss_dssp             GHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHH
T ss_pred             hcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHH
Confidence            754  35789999987664331  1 11  10     01       1224778899999999999999998877766555


Q ss_pred             HHhh
Q 023703          220 EVSN  223 (278)
Q Consensus       220 ~~~~  223 (278)
                      .+..
T Consensus       295 vV~~  298 (359)
T 4fzv_A          295 VVQG  298 (359)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.01  E-value=6.3e-09  Score=82.37  Aligned_cols=98  Identities=12%  Similarity=0.067  Sum_probs=75.3

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC---cceEEEEccccCC--------------
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDT--------------  160 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~--------------  160 (278)
                      .+.++|||+|||  ..++.+++....+|+.+|.++...+.|+++++..|+   .+++++.+|+.+.              
T Consensus        29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            356799999985  677778775235899999999999999999999885   4699999997542              


Q ss_pred             -c--------c--CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          161 -K--------L--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       161 -~--------~--~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       +        .  .++||+|+..+..            ....+..+.+.|+|||++++..
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~k------------~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGRF------------RVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSSS------------HHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCCC------------chhHHHHHHHhcCCCeEEEEeC
Confidence             1        1  2679999976642            1244466779999999997765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.98  E-value=7.6e-10  Score=93.52  Aligned_cols=77  Identities=9%  Similarity=0.117  Sum_probs=65.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--C----CCccEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--E----RQFQLV  169 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~----~~fD~v  169 (278)
                      ..++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|++++..++ .+++++++|+.+++.  .    .+||.|
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            3577899999999999999999872 3589999999999999999998877 689999999887541  1    579999


Q ss_pred             EeCCc
Q 023703          170 MDKGT  174 (278)
Q Consensus       170 ~~~~~  174 (278)
                      +.+..
T Consensus       103 l~D~g  107 (301)
T 1m6y_A          103 LMDLG  107 (301)
T ss_dssp             EEECS
T ss_pred             EEcCc
Confidence            97654

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.96  E-value=2.2e-09  Score=97.77  Aligned_cols=126  Identities=16%  Similarity=0.112  Sum_probs=89.4

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC----C----------CCcEEEEeCChHHHHHHHHHhhhCCCcce
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFSCI  150 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~----------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~  150 (278)
                      .....|+..+ ...++.+|+|.+||+|.+...+.++    .          ...++|+|+++.+...|+.++..+|....
T Consensus       204 ~Vv~lmv~l~-~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~  282 (530)
T 3ufb_A          204 PVVRFMVEVM-DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYP  282 (530)
T ss_dssp             HHHHHHHHHH-CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHhh-ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccc
Confidence            3444444443 3456779999999999998876542    1          12699999999999999999888887667


Q ss_pred             EEEEccccCCcc-----CCCccEEEeCCccceec---------cCCCChhhHHHHHHHHHhccc-------CCcEEEEEe
Q 023703          151 KFLVDDVLDTKL-----ERQFQLVMDKGTLDAIG---------LHPDGPLKRIMYWDSVSKLVA-------PGGLLVITS  209 (278)
Q Consensus       151 ~~~~~d~~~~~~-----~~~fD~v~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~Lk-------pgG~l~~~~  209 (278)
                      .+..+|....+.     ..+||+|++|++|..-.         ...........+++.+.+.||       |||++.++.
T Consensus       283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl  362 (530)
T 3ufb_A          283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV  362 (530)
T ss_dssp             EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred             cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence            788888776432     35799999999995221         011112233467788888776       799998886


Q ss_pred             cC
Q 023703          210 CN  211 (278)
Q Consensus       210 ~~  211 (278)
                      ++
T Consensus       363 P~  364 (530)
T 3ufb_A          363 PN  364 (530)
T ss_dssp             EH
T ss_pred             cc
Confidence            54

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.96  E-value=4.3e-09  Score=87.95  Aligned_cols=109  Identities=21%  Similarity=0.431  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC-----CCcceEEEEccccCCc--cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-----GFSCIKFLVDDVLDTK--LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~-----~~~~~~~~~~d~~~~~--~~~~fD~v  169 (278)
                      ..+++||-||-|.|..+..++++ +..+|+.+|+++..++.|++.+...     .-++++++.+|....-  ..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            45679999999999999999998 4568999999999999999987431     1246999999999864  35789999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +...+ +-.  .+........+++.+++.|+|||+++...
T Consensus       162 i~D~~-dp~--~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          162 ISDCT-DPI--GPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EESCC-CCC--CTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCC-CcC--CCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            98643 211  12222234567899999999999999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.96  E-value=1.2e-09  Score=91.46  Aligned_cols=75  Identities=15%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCc----EEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCC-------C
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSD----LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER-------Q  165 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~----v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-------~  165 (278)
                      ..++.+|||||||+|.++..++..+. +    |+++|+++.+++.++++.    ..+++++++|+.+.+++.       .
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~~~~~~~~~~  114 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGSIARPGDEP  114 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGGGGSCSSSSC
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChhHhcccccCC
Confidence            35678999999999999999998853 4    999999999999999984    257999999999876532       2


Q ss_pred             ccEEEeCCccc
Q 023703          166 FQLVMDKGTLD  176 (278)
Q Consensus       166 fD~v~~~~~~~  176 (278)
                      ...|++|.+|.
T Consensus       115 ~~~vv~NlPY~  125 (279)
T 3uzu_A          115 SLRIIGNLPYN  125 (279)
T ss_dssp             CEEEEEECCHH
T ss_pred             ceEEEEccCcc
Confidence            34688887774

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.94  E-value=6.6e-10  Score=91.72  Aligned_cols=115  Identities=13%  Similarity=0.069  Sum_probs=76.5

Q ss_pred             cCCC--CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-------CC-C-cceEEEEccccCCc--cC
Q 023703           97 YLSS--WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG-F-SCIKFLVDDVLDTK--LE  163 (278)
Q Consensus        97 ~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-------~~-~-~~~~~~~~d~~~~~--~~  163 (278)
                      ..++  .+|||+|||+|..+..++..|. +|+++|+++.+++.++++++.       ++ + .+++++++|..+..  ..
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~  162 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence            3455  7999999999999999999876 799999999887766666532       22 3 46999999997642  24


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                      ++||+|+.+++|..-.    .  .  ..+++..+.|++.+     .......+++.......
T Consensus       163 ~~fDvV~lDP~y~~~~----~--s--aavkk~~~~lr~l~-----~~~~~~~~ll~~a~~~a  211 (258)
T 2oyr_A          163 PRPQVVYLDPMFPHKQ----K--S--ALVKKEMRVFQSLV-----GPDLDADGLLEPARLLA  211 (258)
T ss_dssp             SCCSEEEECCCCCCCC----C---------HHHHHHHHHS-----CCCTTGGGGHHHHHHHC
T ss_pred             ccCCEEEEcCCCCCcc----c--c--hHHHHHHHHHHHhh-----cCCccHHHHHHHHHHhc
Confidence            5799999998885321    1  1  22244455555544     23444555555554433

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.93  E-value=1.7e-09  Score=99.41  Aligned_cols=103  Identities=12%  Similarity=0.182  Sum_probs=74.6

Q ss_pred             CCCeEEEEecCCCHHHHH---HhhCCCC--cEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeC
Q 023703           99 SSWSVLDIGTGNGLLLQE---LSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~---l~~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      +...|||+|||+|-+...   .++.+..  +|+++|.|+. ...+++..+.+++.+ |+++++|+.+...++++|+|++-
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSE  435 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSE  435 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEE
Confidence            345799999999988444   3333322  6899999985 456777788888765 99999999999889999999973


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                       .+..+.++.    .....+....+.|||||+++=
T Consensus       436 -wMG~fLl~E----~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          436 -LLGSFADNE----LSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             -CCBTTBGGG----CHHHHHHHHGGGEEEEEEEES
T ss_pred             -cCccccccc----CCHHHHHHHHHhcCCCcEEcc
Confidence             222222111    223456777899999998754

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.87  E-value=1.4e-09  Score=89.69  Aligned_cols=75  Identities=15%  Similarity=0.097  Sum_probs=60.4

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCc--EEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC------CCccE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE------RQFQL  168 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~------~~fD~  168 (278)
                      ..++.+|||||||+|.++. +.. + .+  |+++|+++.+++.+++++...  ++++++++|+.+.+..      +..+.
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~~~~   93 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLR   93 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEE
T ss_pred             CCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcccCCceE
Confidence            3567899999999999999 755 3 36  999999999999999887543  4799999999886542      23468


Q ss_pred             EEeCCccc
Q 023703          169 VMDKGTLD  176 (278)
Q Consensus       169 v~~~~~~~  176 (278)
                      |++|.++.
T Consensus        94 vvsNlPY~  101 (252)
T 1qyr_A           94 VFGNLPYN  101 (252)
T ss_dssp             EEEECCTT
T ss_pred             EEECCCCC
Confidence            89988874

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.81  E-value=2.4e-08  Score=86.03  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=82.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-----C---CcceEEEEccccCCc-----cCCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-----G---FSCIKFLVDDVLDTK-----LERQ  165 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-----~---~~~~~~~~~d~~~~~-----~~~~  165 (278)
                      ++++||-||.|.|..+..+.+++..+|+.+|+++..++.|++.+...     .   .++++++.+|....-     ..++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            56899999999999999999986679999999999999999976431     1   124889999987653     2468


Q ss_pred             ccEEEeCCccceeccCC---CChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHP---DGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ||+|+.+..-......+   ....-...+++.+++.|+|||+++....
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~  332 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN  332 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            99999763311111111   1123346788999999999999988643

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.77  E-value=9e-09  Score=94.67  Aligned_cols=102  Identities=13%  Similarity=0.140  Sum_probs=71.6

Q ss_pred             CCeEEEEecCCCHHHHHH---hh-CC----------CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc--
Q 023703          100 SWSVLDIGTGNGLLLQEL---SK-QG----------FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL--  162 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l---~~-~~----------~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~--  162 (278)
                      ++.|||+|||+|.++...   ++ .+          ..+|+++|.|+.++..++.+.. +++.+ |+++.+|+.+...  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999986432   21 11          2389999999988876666554 56655 9999999999876  


Q ss_pred             ----CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          163 ----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       163 ----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                          .++.|+|++--. ..+.    ..+.....|..+.+.|||||+++=
T Consensus       489 ~~~~~ekVDIIVSElm-Gsfl----~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELL-GSFG----DNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HHTTCCCCSEEEECCC-BTTB----GGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             ccCCCCcccEEEEecc-cccc----chhccHHHHHHHHHhCCCCcEEEC
Confidence                689999998321 1111    111233456777899999998764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.75  E-value=6.9e-09  Score=85.10  Aligned_cols=112  Identities=15%  Similarity=0.080  Sum_probs=71.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~  174 (278)
                      +.++.+|||+|||+|.++..++.. +...++|+|++-.+...... ....+ .++..+..++.... .+++||+|+++..
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g-~~ii~~~~~~dv~~l~~~~~DlVlsD~a  149 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLG-WNIITFKDKTDIHRLEPVKCDTLLCDIG  149 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTT-GGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCC-CCeEEEeccceehhcCCCCccEEEecCc
Confidence            457789999999999999998876 55578889887432100000 01112 14555566543323 3578999999876


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEecC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSCN  211 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  211 (278)
                      .+ ...+..+......+++.+.++|+|| |.|++..+.
T Consensus       150 pn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          150 ES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             CC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             cC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            65 2211111122234578889999999 999998776

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.70  E-value=1e-08  Score=75.78  Aligned_cols=71  Identities=17%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             cccchhhhc-cccCCCCeEEEEecCCC-HHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc
Q 023703           86 LKSEPVEEN-DKYLSSWSVLDIGTGNG-LLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  162 (278)
Q Consensus        86 ~~~~~~~~~-~~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~  162 (278)
                      +...+.+.+ .+..++.+|||+|||+| ..+..|++ .|+ .|+++|+++.+++               +++.|+++...
T Consensus        21 m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------~v~dDiF~P~~   84 (153)
T 2k4m_A           21 MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------IVRDDITSPRM   84 (153)
T ss_dssp             HHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------EECCCSSSCCH
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------eEEccCCCCcc
Confidence            333444443 33455679999999999 79999997 776 7999999998776               78899988655


Q ss_pred             C--CCccEEEeC
Q 023703          163 E--RQFQLVMDK  172 (278)
Q Consensus       163 ~--~~fD~v~~~  172 (278)
                      +  +.||+|++.
T Consensus        85 ~~Y~~~DLIYsi   96 (153)
T 2k4m_A           85 EIYRGAALIYSI   96 (153)
T ss_dssp             HHHTTEEEEEEE
T ss_pred             cccCCcCEEEEc
Confidence            3  589999763

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.62  E-value=7.3e-09  Score=85.08  Aligned_cols=122  Identities=10%  Similarity=-0.005  Sum_probs=76.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc--cccCCccCCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD--DVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~--d~~~~~~~~~fD~v~~~~  173 (278)
                      +.++.+|||+|||+|.++..++.. +...|+|+|++..+...+.. ....+ .++.....  |+..+ ...++|+|+|+.
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g-~~ii~~~~~~dv~~l-~~~~~DvVLSDm  164 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLG-WNLIRFKDKTDVFNM-EVIPGDTLLCDI  164 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCGGGS-CCCCCSEEEECC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCC-CceEEeeCCcchhhc-CCCCcCEEEecC
Confidence            467789999999999999988865 65689999998653222211 01112 23333333  33322 357899999987


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCC--cEEEEEecCC---ChHHHHHHHh
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPG--GLLVITSCNS---TKDELVHEVS  222 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~~---~~~~~~~~~~  222 (278)
                      ..+ ......+......+++-+.++|+||  |.|++-.+.+   ...++...+.
T Consensus       165 Apn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk  217 (282)
T 3gcz_A          165 GES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQ  217 (282)
T ss_dssp             CCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHH
T ss_pred             ccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHH
Confidence            765 3211111222234578888999999  9999988762   2234444444

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.54  E-value=2.7e-07  Score=76.89  Aligned_cols=107  Identities=10%  Similarity=-0.019  Sum_probs=80.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC----C--CCcEEEEeCChH--------------------------HHHHHHHHhhh
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSED--------------------------AINLAQSLANR  144 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~----~--~~~v~~~D~s~~--------------------------~i~~a~~~~~~  144 (278)
                      ...+++|||+||..|..++.++..    +  ..+|+++|..+.                          .++.++++++.
T Consensus       104 ~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          104 NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            345679999999999988887643    1  358999996421                          46788999999


Q ss_pred             CCC--cceEEEEccccCCcc---CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          145 DGF--SCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       145 ~~~--~~~~~~~~d~~~~~~---~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .|+  ++++++.+|+.+..+   .++||+|+...-         .......+++.+...|+|||++++.+...
T Consensus       184 ~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---------~y~~~~~~Le~~~p~L~pGGiIv~DD~~~  247 (282)
T 2wk1_A          184 YDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---------LYESTWDTLTNLYPKVSVGGYVIVDDYMM  247 (282)
T ss_dssp             TTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---------SHHHHHHHHHHHGGGEEEEEEEEESSCTT
T ss_pred             cCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---------ccccHHHHHHHHHhhcCCCEEEEEcCCCC
Confidence            887  569999999976422   467888886542         12345677899999999999999987643

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.45  E-value=6.7e-07  Score=77.50  Aligned_cols=114  Identities=11%  Similarity=0.047  Sum_probs=73.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC----------------CCCcEEEEeCChHHHHHHHHHhhhCC-----------C-cce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ----------------GFSDLTGVDYSEDAINLAQSLANRDG-----------F-SCI  150 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~~~D~s~~~i~~a~~~~~~~~-----------~-~~~  150 (278)
                      .+.+|+|+|||+|..+..+...                +.-+|...|+........=+.+....           . .+-
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            3578999999999988877321                11278888887766554444333210           0 011


Q ss_pred             EEEEccccC----CccCCCccEEEeCCccceeccCCCCh-------------------------------hhHHHHHHHH
Q 023703          151 KFLVDDVLD----TKLERQFQLVMDKGTLDAIGLHPDGP-------------------------------LKRIMYWDSV  195 (278)
Q Consensus       151 ~~~~~d~~~----~~~~~~fD~v~~~~~~~~~~~~~~~~-------------------------------~~~~~~l~~~  195 (278)
                      .|..+....    ..++++||+|+++.+++++.-.+...                               .+...+|+..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            122222222    22468999999999999886322211                               1455678999


Q ss_pred             HhcccCCcEEEEEecCC
Q 023703          196 SKLVAPGGLLVITSCNS  212 (278)
Q Consensus       196 ~~~LkpgG~l~~~~~~~  212 (278)
                      .+.|+|||+++++....
T Consensus       212 a~eL~pGG~mvl~~~gr  228 (374)
T 3b5i_A          212 AAEVKRGGAMFLVCLGR  228 (374)
T ss_dssp             HHHEEEEEEEEEEEEEC
T ss_pred             HHHhCCCCEEEEEEecC
Confidence            99999999999986543

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.45  E-value=2e-07  Score=74.25  Aligned_cols=120  Identities=13%  Similarity=0.135  Sum_probs=80.7

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-cccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~~~~~~~~fD~v~~~~  173 (278)
                      .+.++.+|||+||++|.++..++.. |..+|+|+|+-..--+.- ...+..|...++|+.+ |+....+ .++|.|+|+.
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~~~-~~~DtllcDI  152 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYLPP-EKCDTLLCDI  152 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGCCC-CCCSEEEECC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeecCC-ccccEEEEec
Confidence            3467889999999999999977776 666899999976533210 0112345556999999 9865544 7799999864


Q ss_pred             ccceeccCCCCh---hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          174 TLDAIGLHPDGP---LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       174 ~~~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      .-    .++...   ......|+-+.++|++ |-+++-...+...+..+.++
T Consensus       153 ge----Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~  199 (267)
T 3p8z_A          153 GE----SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLE  199 (267)
T ss_dssp             CC----CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHH
T ss_pred             CC----CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHH
Confidence            32    122211   1224567788899999 78888776666644444443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.44  E-value=5.8e-07  Score=73.95  Aligned_cols=121  Identities=12%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-cccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~~~~~~~~fD~v~~~~  173 (278)
                      .+.++.+|||+||++|.++..++.. |...|+|+|+...--+.-+ ..+..+..-+.++.+ |+..+.+ .++|+|+|+-
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~~-~~~D~ivcDi  168 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRPS-ECCDTLLCDI  168 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSCC-CCCSEEEECC
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCCC-CCCCEEEEEC
Confidence            3467789999999999999977776 6668999999765221000 011233234788887 8776654 6799999864


Q ss_pred             ccceeccCCCCh---hhHHHHHHHHHhcccCC-cEEEEEecCCChHHHHHHHh
Q 023703          174 TLDAIGLHPDGP---LKRIMYWDSVSKLVAPG-GLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       174 ~~~~~~~~~~~~---~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~  222 (278)
                      . +.   ++...   ......|+-+.++|++| |-+++-...+-..+..+.+.
T Consensus       169 g-eS---s~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~  217 (321)
T 3lkz_A          169 G-ES---SSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME  217 (321)
T ss_dssp             C-CC---CSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred             c-cC---CCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence            4 21   12211   12245677788999999 88888877664444444443

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.43  E-value=2.3e-07  Score=76.51  Aligned_cols=106  Identities=17%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhh--------CC-----CCcEEEEeCCh---HH-----------HHHHHHHhhh-------
Q 023703           99 SSWSVLDIGTGNGLLLQELSK--------QG-----FSDLTGVDYSE---DA-----------INLAQSLANR-------  144 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~--------~~-----~~~v~~~D~s~---~~-----------i~~a~~~~~~-------  144 (278)
                      ++.+|||+|||+|..+..+++        .+     ..+++++|..|   ..           .+.++++++.       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            456999999999988877543        21     13799999887   33           3356666543       


Q ss_pred             -------CCCcceEEEEccccCCcc--C----CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          145 -------DGFSCIKFLVDDVLDTKL--E----RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       145 -------~~~~~~~~~~~d~~~~~~--~----~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                             .+..+++++.+|+.+..+  +    ..||+|+.++.-..  .++  ..-...+++.+.++|+|||+++.-
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~--~~p--~lw~~~~l~~l~~~L~pGG~l~ty  212 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA--KNP--DMWTQNLFNAMARLARPGGTLATF  212 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT--TCG--GGCCHHHHHHHHHHEEEEEEEEES
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc--cCh--hhcCHHHHHHHHHHcCCCcEEEEE
Confidence                   122358899999877322  2    27999997641100  011  112356779999999999998853

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.39  E-value=3e-07  Score=76.01  Aligned_cols=111  Identities=11%  Similarity=0.011  Sum_probs=69.5

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc--cccCCccCCCccEEEeCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD--DVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~--d~~~~~~~~~fD~v~~~~  173 (278)
                      +.++.+|||+||++|.++..+++. +...|+|+|+...+...... ....+ .++.....  |+..+ ..+++|+|+++.
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~di~~l-~~~~~DlVlsD~  155 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSNVFTM-PTEPSDTLLCDI  155 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCTTTS-CCCCCSEEEECC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC-CceEEeecCceeeec-CCCCcCEEeecC
Confidence            457889999999999999999986 55689999997542110000 00111 13322332  33222 246899999987


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  211 (278)
                      ..+ ......+......++.-+.++|+|| |.|++-.+.
T Consensus       156 APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          156 GES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             cCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            655 2211111112234578889999999 999998766

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.38  E-value=3e-07  Score=74.36  Aligned_cols=117  Identities=11%  Similarity=0.088  Sum_probs=70.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhh-h-CCCcceEEEEc-cccCCccCCCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-R-DGFSCIKFLVD-DVLDTKLERQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~-~-~~~~~~~~~~~-d~~~~~~~~~fD~v~~~  172 (278)
                      +.++.+|||+||+.|.++..+++. +...|.|.++.... . .. -.. . .|+.-+.++++ |+.+.. +.++|+|+|+
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~-P~~~~~~Gv~~i~~~~G~Df~~~~-~~~~DvVLSD  146 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EE-PMLMQSYGWNIVTMKSGVDVFYKP-SEISDTLLCD  146 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CC-CCCCCSTTGGGEEEECSCCGGGSC-CCCCSEEEEC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cC-CCcccCCCceEEEeeccCCccCCC-CCCCCEEEeC
Confidence            468899999999999999999987 22233444443221 0 00 000 0 12212456657 998742 4579999997


Q ss_pred             CccceeccCC-CChhhHHHHHHHHHhcccCCc-EEEEEecCCChHHHHH
Q 023703          173 GTLDAIGLHP-DGPLKRIMYWDSVSKLVAPGG-LLVITSCNSTKDELVH  219 (278)
Q Consensus       173 ~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~  219 (278)
                      ..-. -. +. .+.......+.-+.++|+||| .|++-.+.....++.+
T Consensus       147 MAPn-SG-~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~  193 (269)
T 2px2_A          147 IGES-SP-SAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIE  193 (269)
T ss_dssp             CCCC-CS-CHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHH
T ss_pred             CCCC-CC-ccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHH
Confidence            6542 11 11 001111235677779999999 9999887764555544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.33  E-value=3e-06  Score=72.71  Aligned_cols=71  Identities=14%  Similarity=0.110  Sum_probs=56.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      +.+|.+|||+||++|.++..++++|. +|++||+.+-.-.     +...  ++++++++|.....+ .++||+|+|+...
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~-----l~~~--~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQS-----LMDT--GQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHH-----HHTT--TCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChh-----hccC--CCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            46899999999999999999999975 8999998753211     1112  579999999998766 4689999997654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.26  E-value=3e-06  Score=70.03  Aligned_cols=122  Identities=9%  Similarity=-0.045  Sum_probs=88.2

Q ss_pred             hhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-----ccCC
Q 023703           90 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLER  164 (278)
Q Consensus        90 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~  164 (278)
                      ++..+... .+..+||+.+|||.+++.+.+.+ .+++.+|.++..++..++|++..  .+++++..|....     ++..
T Consensus        83 yf~~l~~~-n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~~L~~l~~~~~  158 (283)
T 2oo3_A           83 YISVIKQI-NLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVSKLNALLPPPE  158 (283)
T ss_dssp             HHHHHHHH-SSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHHHHHHHCSCTT
T ss_pred             HHHHHHHh-cCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHHHHHHhcCCCC
Confidence            34444333 35578999999999999999965 79999999999999999998753  4699999997652     2235


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHh--cccCCcEEEEEecCCChHHHHHHHh
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSK--LVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      +||+|+.+++|..-.       .....++.+.+  .+.|+|++++-.+-.+..+......
T Consensus       159 ~fdLVfiDPPYe~k~-------~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~  211 (283)
T 2oo3_A          159 KRGLIFIDPSYERKE-------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLR  211 (283)
T ss_dssp             SCEEEEECCCCCSTT-------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHH
T ss_pred             CccEEEECCCCCCCc-------HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHH
Confidence            799999999986211       33333344443  4579999999877666655444333

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.22  E-value=7.3e-06  Score=71.12  Aligned_cols=112  Identities=12%  Similarity=0.019  Sum_probs=73.4

Q ss_pred             CCeEEEEecCCCHHHHHHhhC------------------CCCcEEEEeCC-----------hHHHHHHHHHhhhCCC-cc
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ------------------GFSDLTGVDYS-----------EDAINLAQSLANRDGF-SC  149 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~v~~~D~s-----------~~~i~~a~~~~~~~~~-~~  149 (278)
                      ..+|+|+||++|..+..+...                  +.-+|+..|+.           +...+.+++.   .+. .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            468999999999988876553                  11268888987           4444433222   221 12


Q ss_pred             eEEEEccccCC----ccCCCccEEEeCCccceeccCCCChh--------------------------------hHHHHHH
Q 023703          150 IKFLVDDVLDT----KLERQFQLVMDKGTLDAIGLHPDGPL--------------------------------KRIMYWD  193 (278)
Q Consensus       150 ~~~~~~d~~~~----~~~~~fD~v~~~~~~~~~~~~~~~~~--------------------------------~~~~~l~  193 (278)
                      -.|..+.....    -+++++|+|+++.+++++.-.+....                                +...+|+
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35555554442    24689999999999998753332211                                2234578


Q ss_pred             HHHhcccCCcEEEEEecCCCh
Q 023703          194 SVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       194 ~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ...+.|+|||+++++......
T Consensus       210 ~Ra~eL~pGG~mvl~~~gr~~  230 (384)
T 2efj_A          210 IHSEELISRGRMLLTFICKED  230 (384)
T ss_dssp             HHHHHEEEEEEEEEEEECCCT
T ss_pred             HHHHHhccCCeEEEEEecCCC
Confidence            889999999999998765544

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.17  E-value=2.7e-06  Score=70.26  Aligned_cols=71  Identities=11%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc------CCCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------~~~fD~v~  170 (278)
                      ..++..+||.+||.|..+..+++.+ .+|+|+|.++.+++.|++ ++.   +++.+++++..++..      .+++|.|+
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g~~~vDgIL   94 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALGVERVDGIL   94 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcCCCCcCEEE
Confidence            4577899999999999999999984 489999999999999998 654   479999999987631      15799988


Q ss_pred             eC
Q 023703          171 DK  172 (278)
Q Consensus       171 ~~  172 (278)
                      .+
T Consensus        95 ~D   96 (285)
T 1wg8_A           95 AD   96 (285)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.09  E-value=4.4e-06  Score=70.44  Aligned_cols=47  Identities=26%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  145 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~  145 (278)
                      .++..|||++||+|..+..++..|. +++|+|+++.+++.|++++...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            5788999999999999999999874 8999999999999999998764

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.02  E-value=1.5e-05  Score=67.39  Aligned_cols=72  Identities=15%  Similarity=0.077  Sum_probs=56.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ  167 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~fD  167 (278)
                      ..++..++|..||.|..+..++.. + ..+|+|+|.++.+++.++ ++  .. .++.+++++..+...       .+++|
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~-~Rv~lv~~nF~~l~~~L~~~g~~~~vD  130 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DD-PRFSIIHGPFSALGEYVAERDLIGKID  130 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CC-TTEEEEESCGGGHHHHHHHTTCTTCEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cC-CcEEEEeCCHHHHHHHHHhcCCCCccc
Confidence            467889999999999999999987 3 348999999999999995 44  22 479999999877531       13688


Q ss_pred             EEEeC
Q 023703          168 LVMDK  172 (278)
Q Consensus       168 ~v~~~  172 (278)
                      .|+.+
T Consensus       131 gILfD  135 (347)
T 3tka_A          131 GILLD  135 (347)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            88854

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.01  E-value=1.3e-05  Score=68.96  Aligned_cols=113  Identities=14%  Similarity=0.137  Sum_probs=77.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC------------C---C--CcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccC-
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ------------G---F--SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLD-  159 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~------------~---~--~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~-  159 (278)
                      ...+|+|+||++|..+..+...            +   .  -+|+..|+..+....+-+.+....- .+-.|..+.... 
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3468999999999887766543            1   1  2789999999888877766543110 022444444333 


Q ss_pred             --C-ccCCCccEEEeCCccceeccCCCC--------------------------hhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          160 --T-KLERQFQLVMDKGTLDAIGLHPDG--------------------------PLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       160 --~-~~~~~fD~v~~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                        . -+++++|+|+++.+++++.--+..                          ..+...+|+...+.|+|||++++...
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence              2 246899999999999887532211                          13456778999999999999999864


Q ss_pred             C
Q 023703          211 N  211 (278)
Q Consensus       211 ~  211 (278)
                      .
T Consensus       211 g  211 (359)
T 1m6e_X          211 G  211 (359)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.82  E-value=9.6e-05  Score=60.85  Aligned_cols=112  Identities=11%  Similarity=0.086  Sum_probs=71.3

Q ss_pred             CCCCeEEEEec------CCCHHHH-HHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEE
Q 023703           98 LSSWSVLDIGT------GNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGc------G~G~~~~-~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~  170 (278)
                      ..+.+|||+|+      ..|.... .+...| ..|+++|+.+-..           ..+ .++++|+.+....++||+|+
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~VLr~~~p~g-~~VVavDL~~~~s-----------da~-~~IqGD~~~~~~~~k~DLVI  174 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTG-TLLVDSDLNDFVS-----------DAD-STLIGDCATVHTANKWDLII  174 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTT-CEEEEEESSCCBC-----------SSS-EEEESCGGGEEESSCEEEEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcHHHHHHhCCCC-cEEEEeeCccccc-----------CCC-eEEEccccccccCCCCCEEE
Confidence            56889999996      5565322 222222 3899999987531           113 45999987766678999999


Q ss_pred             eCCccceecc-CCC---ChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHh
Q 023703          171 DKGTLDAIGL-HPD---GPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS  222 (278)
Q Consensus       171 ~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  222 (278)
                      +...-..... +.+   ...-...++.-+.+.|+|||.|++-.+.....+.+..+.
T Consensus       175 SDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lr  230 (344)
T 3r24_A          175 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLM  230 (344)
T ss_dssp             ECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHH
T ss_pred             ecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHH
Confidence            9754322111 111   112345566778899999999999886665554444443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.77  E-value=2.6e-05  Score=64.41  Aligned_cols=48  Identities=25%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  146 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~  146 (278)
                      .++..|||.+||+|..+..+...| .+++|+|+++.+++.++++++.++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcc
Confidence            578899999999999999999987 589999999999999999987654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.59  E-value=0.00013  Score=62.60  Aligned_cols=74  Identities=14%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             CeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---C-CCccEEEeCCc
Q 023703          101 WSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---E-RQFQLVMDKGT  174 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---~-~~fD~v~~~~~  174 (278)
                      .+|+|++||.|.++..+...|  +..|.++|+++.+++..+.|+.     +..++.+|+.+...   . ..+|+++..++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP   77 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence            489999999999999999988  4579999999999999999873     34567899987642   1 26999999887


Q ss_pred             cceec
Q 023703          175 LDAIG  179 (278)
Q Consensus       175 ~~~~~  179 (278)
                      ...+.
T Consensus        78 Cq~fS   82 (343)
T 1g55_A           78 CQPFT   82 (343)
T ss_dssp             -----
T ss_pred             Ccchh
Confidence            55443

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.53  E-value=0.00038  Score=60.48  Aligned_cols=72  Identities=18%  Similarity=0.165  Sum_probs=59.3

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc---------CCCccEEEe
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQFQLVMD  171 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~fD~v~~  171 (278)
                      .+++|+.||.|.++..+...|+..+.++|+++.+++..+.|+     ++..++++|+.+...         ...+|+++.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g   77 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG   77 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence            489999999999999999999877889999999999888875     356778899987632         357999998


Q ss_pred             CCccce
Q 023703          172 KGTLDA  177 (278)
Q Consensus       172 ~~~~~~  177 (278)
                      .++-..
T Consensus        78 gpPCQ~   83 (376)
T 3g7u_A           78 GPPCQG   83 (376)
T ss_dssp             CCCCCT
T ss_pred             cCCCCC
Confidence            776443

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.51  E-value=0.00053  Score=58.42  Aligned_cols=74  Identities=11%  Similarity=0.068  Sum_probs=59.7

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~  176 (278)
                      .+.+++|++||.|.++..+...|+..+.++|+++.+++..+.|+...    .   .+|+.+...  -..+|+++..++..
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            35699999999999999999999878999999999999999987432    1   678877543  24699999887776


Q ss_pred             eec
Q 023703          177 AIG  179 (278)
Q Consensus       177 ~~~  179 (278)
                      .+.
T Consensus        83 ~fS   85 (327)
T 2c7p_A           83 AFS   85 (327)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            554

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.33  E-value=0.00036  Score=59.86  Aligned_cols=60  Identities=15%  Similarity=0.103  Sum_probs=51.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  161 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~  161 (278)
                      ++..|||||.|.|.++..|++. ..++|+++|+++..+...++.+ .  .++++++.+|+.++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCccchh
Confidence            3579999999999999999986 3458999999999999999877 2  257999999997653

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.24  E-value=0.0039  Score=52.13  Aligned_cols=77  Identities=19%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCc--EEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      ....+++|+.||.|.++..+...|+..  |.++|+++.+++..+.|+     ++..+..+|+.+...     .+.+|+++
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~Dll~   88 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFDLVI   88 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcCEEE
Confidence            345689999999999999999998754  699999999998888775     244678899988642     14699999


Q ss_pred             eCCccceec
Q 023703          171 DKGTLDAIG  179 (278)
Q Consensus       171 ~~~~~~~~~  179 (278)
                      ...+-..+.
T Consensus        89 ggpPCQ~fS   97 (295)
T 2qrv_A           89 GGSPCNDLS   97 (295)
T ss_dssp             ECCCCGGGB
T ss_pred             ecCCCcccc
Confidence            887665554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.15  E-value=0.0026  Score=54.12  Aligned_cols=101  Identities=15%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC--CCccEEEeCCccceec
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLDAIG  179 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~fD~v~~~~~~~~~~  179 (278)
                      +|||+.||.|.++..+.+.|+..+.++|+++.+++.-+.|+.      -.++.+|+.+....  ...|+++...+-..+.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS   75 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEFPKCDGIIGGPPSQSWS   75 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGSCCCSEEECCCCGGGTE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhCCcccEEEecCCCCCcC
Confidence            799999999999999999998788899999999998888752      35678999887542  5689998776654443


Q ss_pred             c-----CCCChh-hHHHHHHHHHhcccCCcEEEEEe
Q 023703          180 L-----HPDGPL-KRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       180 ~-----~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .     ...++. ....-+-++.+.++|. .+++..
T Consensus        76 ~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~EN  110 (331)
T 3ubt_Y           76 EGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAEN  110 (331)
T ss_dssp             ETTEECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEE
T ss_pred             CCCCccCCCCchhHHHHHHHHHHhccCCe-EEEeee
Confidence            2     111211 1222223455567885 455554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.00  E-value=0.00012  Score=77.77  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=55.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC----C--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-c-cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~----~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~-~~~~fD~v  169 (278)
                      .+..+||+||.|+|..+..+...    +  +.+++.+|+|+...+.++++++..   ++.....|..+. . ....||+|
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC-----CCEE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccCCCCceeEE
Confidence            35679999999999765544322    1  347999999999988888877543   233322343332 1 24579999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++..+++...       +....+.+++++|||||.+++...
T Consensus      1316 ia~~vl~~t~-------~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1316 VCNCALATLG-------DPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             EEECC---------------------------CCEEEEEEC
T ss_pred             EEcccccccc-------cHHHHHHHHHHhcCCCcEEEEEec
Confidence            9988875443       445566899999999999988753

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.89  E-value=0.0048  Score=52.40  Aligned_cols=73  Identities=11%  Similarity=0.048  Sum_probs=57.6

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCC--CcE-EEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEEEeC
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGF--SDL-TGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDK  172 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~--~~v-~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~  172 (278)
                      ..+++|+.||.|.++..+...|.  ..+ .++|+++.+++..+.|+..     . ++.+|+.+...    ...+|+++..
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~gg   83 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFMS   83 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEec
Confidence            45899999999999999999874  456 7999999999999988732     2 56788887643    2368999987


Q ss_pred             Ccccee
Q 023703          173 GTLDAI  178 (278)
Q Consensus       173 ~~~~~~  178 (278)
                      .+-..+
T Consensus        84 pPCQ~f   89 (327)
T 3qv2_A           84 PPCQPY   89 (327)
T ss_dssp             CCCTTC
T ss_pred             CCccCc
Confidence            775444

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.80  E-value=0.0032  Score=54.40  Aligned_cols=95  Identities=19%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCcc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD  167 (278)
                      +..++.+||-+|||. |..+..+++. |+.+|+++|.++..++.+++.    |.+.  ++..+-.+..      ..+.+|
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~--vi~~~~~~~~~~~~~~~~gg~D  260 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GATH--VINSKTQDPVAAIKEITDGGVN  260 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCSE--EEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCCE--EecCCccCHHHHHHHhcCCCCc
Confidence            457889999999875 6677777765 765799999999999888753    3221  2222111110      123699


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|+..-..             ...++.+.++|+|+|++++..
T Consensus       261 ~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          261 FALESTGS-------------PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             EEEECSCC-------------HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEECCCC-------------HHHHHHHHHHHhcCCEEEEeC
Confidence            99864321             123378889999999998864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.67  E-value=0.0045  Score=54.07  Aligned_cols=107  Identities=17%  Similarity=0.123  Sum_probs=64.7

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-c-------cCCC
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-------LERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~-------~~~~  165 (278)
                      +..++.+||-+|||. |.++..+++. |+.+|+++|.++..++.+++    .|.   ..+..+-.+. .       ....
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF---ETIDLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC---EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---cEEcCCCcchHHHHHHHHhCCCC
Confidence            457889999999876 6777777775 76589999999998888764    343   2232221111 1       1236


Q ss_pred             ccEEEeCCccceeccCCC--ChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHPD--GPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+|+..-.-.... +..  ........++.+.++|+++|++++...
T Consensus       255 ~Dvvid~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          255 VDCGVDAVGFEAHG-LGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             EEEEEECSCTTCBC-SGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCEEEECCCCcccc-ccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            99998643221100 000  000011234778899999999987643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.67  E-value=0.0017  Score=55.17  Aligned_cols=48  Identities=8%  Similarity=-0.024  Sum_probs=43.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  146 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~  146 (278)
                      .++..|||..||+|..+......| .+.+|+|+++..++.+++++...+
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhcc
Confidence            678899999999999999999987 589999999999999999987655

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.66  E-value=0.0039  Score=53.41  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=63.0

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      +..++.+||-+|+|. |..+..+++. |+ +|+++|.++...+.+++    .|.+.+  + .+...  ....+|+|+..-
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~v--~-~~~~~--~~~~~D~vid~~  242 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVKHF--Y-TDPKQ--CKEELDFIISTI  242 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCSEE--E-SSGGG--CCSCEEEEEECC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCCee--c-CCHHH--HhcCCCEEEECC
Confidence            557889999999864 5666666665 75 89999999998888865    443322  2 33222  223799998643


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .-..             .++.+.++|+|+|++++....
T Consensus       243 g~~~-------------~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          243 PTHY-------------DLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             CSCC-------------CHHHHHTTEEEEEEEEECCCC
T ss_pred             CcHH-------------HHHHHHHHHhcCCEEEEECCC
Confidence            2210             126788999999999987543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.63  E-value=0.0025  Score=54.78  Aligned_cols=96  Identities=18%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc---ccCC----c--cCC
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD---VLDT----K--LER  164 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d---~~~~----~--~~~  164 (278)
                      +..++.+||-+|+|. |..+..+++. |+.+|+++|.++...+.+++    .|.+.  ++..+   ..+.    .  ..+
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADL--VLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE--EEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCE--EEcCcccccchHHHHHHHHhCC
Confidence            457889999999865 6666667664 75589999999998888765    34322  22211   0110    0  124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+|+|+..-..             ...+..+.++|+|+|++++...
T Consensus       242 g~D~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          242 KPEVTIECTGA-------------EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CCSEEEECSCC-------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCEEEECCCC-------------hHHHHHHHHHhcCCCEEEEEec
Confidence            68999864321             1123678899999999988653

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.56  E-value=0.0072  Score=53.05  Aligned_cols=63  Identities=21%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHh-hC-C-CCcEEEEeCChHHHHHHHHHhhh---CCC-cceEEEEcccc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELS-KQ-G-FSDLTGVDYSEDAINLAQSLANR---DGF-SCIKFLVDDVL  158 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~-~~-~-~~~v~~~D~s~~~i~~a~~~~~~---~~~-~~~~~~~~d~~  158 (278)
                      ...++..|+|+|++.|..+..++ .. + ..+|+++|++|...+..+++++.   ++. +++.++..-+.
T Consensus       223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            34688899999999999999887 33 3 35899999999999999999987   345 56776655443

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.56  E-value=0.0032  Score=53.64  Aligned_cols=73  Identities=11%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             CeEEEEecCCCHHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEEEeCCc
Q 023703          101 WSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKGT  174 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~~~  174 (278)
                      .+++|+.||.|.++..+...|.  ..|.++|+++.+++.-+.|+.     +..++.+|+.+...    ...+|+++...+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP   78 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP   78 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence            3799999999999999988775  568899999999999888863     34567888887643    236899998766


Q ss_pred             ccee
Q 023703          175 LDAI  178 (278)
Q Consensus       175 ~~~~  178 (278)
                      -..+
T Consensus        79 CQ~f   82 (333)
T 4h0n_A           79 CQPF   82 (333)
T ss_dssp             CCCS
T ss_pred             Ccch
Confidence            5443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.50  E-value=0.0072  Score=51.78  Aligned_cols=96  Identities=17%  Similarity=0.154  Sum_probs=63.1

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-------ccCCCc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-------~~~~~f  166 (278)
                      +..++.+||-+|+|. |..+..+++. |+.+|+++|.++..++.+++.    |..  .++..+-.+.       .....+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT--DIINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC--EEECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc--eEEcCCCcCHHHHHHHHcCCCCC
Confidence            457889999999865 5666777776 665899999999988888763    322  1222111111       112369


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |+|+....-.             ..+..+.++|+|+|+++....
T Consensus       237 D~v~d~~g~~-------------~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          237 DKVVIAGGDV-------------HTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             EEEEECSSCT-------------THHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCCh-------------HHHHHHHHHHhcCCEEEEecc
Confidence            9998642211             123778889999999987653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.50  E-value=0.0067  Score=52.45  Aligned_cols=99  Identities=19%  Similarity=0.258  Sum_probs=63.3

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcce-EEEEccccCC------ccCCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDT------KLERQ  165 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~-~~~~~d~~~~------~~~~~  165 (278)
                      .+..++.+||-+|+|. |..+..+++. |+.+|+++|.++...+.+++.    |.+.+ .....|..+.      ...+.
T Consensus       178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~i~~~~~~~~gg  253 (370)
T 4ej6_A          178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GATATVDPSAGDVVEAIAGPVGLVPGG  253 (370)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCCEEECCCCcCHHHHHHhhhhccCCC
Confidence            3457889999999864 5566666665 766899999999998888763    33211 1111111110      11247


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+|+..-.-             ...++.+.++|++||++++...
T Consensus       254 ~Dvvid~~G~-------------~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          254 VDVVIECAGV-------------AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             EEEEEECSCC-------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCC-------------HHHHHHHHHHhccCCEEEEEec
Confidence            9999864221             1233778899999999988753

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.45  E-value=0.0069  Score=54.15  Aligned_cols=77  Identities=12%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------------
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------------  162 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------------  162 (278)
                      ..+++|+.||.|.++..+...|+..|.++|+++.+++.-+.|+...  ++..++.+|+.+...                 
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~  165 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ  165 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhhhh
Confidence            4689999999999999999988877999999999999888876321  234566788766431                 


Q ss_pred             -CCCccEEEeCCcccee
Q 023703          163 -ERQFQLVMDKGTLDAI  178 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~  178 (278)
                       ...+|+++...+-..+
T Consensus       166 ~~~~~Dvl~gGpPCQ~F  182 (482)
T 3me5_A          166 HIPEHDVLLAGFPCQPF  182 (482)
T ss_dssp             HSCCCSEEEEECCCCCC
T ss_pred             cCCCCCEEEecCCCcch
Confidence             1468999876654433

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.43  E-value=0.0028  Score=55.41  Aligned_cols=104  Identities=16%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-Cc-------cCCC
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK-------LERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~~-------~~~~  165 (278)
                      +..++.+||-+|||. |.++..+++. |+.+|+++|.++..++.+++    .|.   +.+...-.+ ..       ....
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---EIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---EEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC---cEEccCCcchHHHHHHHHhCCCC
Confidence            457889999999865 6667777765 76579999999999888865    343   222221111 10       1236


Q ss_pred             ccEEEeCCccceec-----cCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          166 FQLVMDKGTLDAIG-----LHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       166 fD~v~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|+|+..-.-....     .+..   .....++.+.++|+++|++++..
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHE---APATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSB---CTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCEEEECCCCccccccccccccc---chHHHHHHHHHHHhcCCEEEEec
Confidence            99998743321100     0000   01123478889999999998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.43  E-value=0.0055  Score=52.74  Aligned_cols=98  Identities=16%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEE-----ccccCC----ccCC
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV-----DDVLDT----KLER  164 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~-----~d~~~~----~~~~  164 (278)
                      +..++.+||-+|+|. |..+..+++. |+..|+++|.++...+.+++. ...   -+.+..     .|+.+.    ....
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---VVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---CEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---cccccccccchHHHHHHHHHHhCCC
Confidence            457889999999854 5666666665 765699999999999999875 211   122221     111110    1134


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+|+++..-.-             ...+..+.++|+++|++++...
T Consensus       252 g~Dvvid~~g~-------------~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          252 EPAVALECTGV-------------ESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCSEEEECSCC-------------HHHHHHHHHHSCTTCEEEECCC
T ss_pred             CCCEEEECCCC-------------hHHHHHHHHHhcCCCEEEEEcc
Confidence            79999864221             1123778899999999988743

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.42  E-value=0.0027  Score=53.83  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=40.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCCh---HHHHHHHHHhhhCC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE---DAINLAQSLANRDG  146 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~---~~i~~a~~~~~~~~  146 (278)
                      .++..|||..||+|..+......| .+.+|+|+++   ..++.+++++...+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            578899999999999999999887 5899999999   99999999886543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.16  E-value=0.004  Score=53.87  Aligned_cols=95  Identities=16%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--ccCCCccEEEe
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KLERQFQLVMD  171 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~v~~  171 (278)
                      +..++.+||-+|+|. |..+..+++. |+ +|+++|.++..++.+++    .|...  ++...-.+.  ...+.+|+|+.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~~g~Dvvid  263 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGADE--VVNSRNADEMAAHLKSFDFILN  263 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCSE--EEETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCcE--EeccccHHHHHHhhcCCCEEEE
Confidence            457889999999864 5666666664 65 69999999998888875    23222  121110000  01256899886


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .-.-..             .++.+.++|+|+|+++....
T Consensus       264 ~~g~~~-------------~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          264 TVAAPH-------------NLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             CCSSCC-------------CHHHHHTTEEEEEEEEECCC
T ss_pred             CCCCHH-------------HHHHHHHHhccCCEEEEecc
Confidence            432211             12677889999999887643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.15  E-value=0.011  Score=50.27  Aligned_cols=95  Identities=17%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccE
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQL  168 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~  168 (278)
                      +..++.+||-+|+|. |..+..+++. |+ +|+++|.++...+.+++    .|.+.  ++..+-.+..     ..+.+|+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAEV--AVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCCE--EEeCCCcCHHHHHHHhCCCCCE
Confidence            457889999999875 6777777775 76 89999999999888865    34322  2221111111     1236888


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++....-             ...++.+.++|+|+|++++...
T Consensus       236 vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          236 VLVTAVS-------------PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             EEESSCC-------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEeCCC-------------HHHHHHHHHHhccCCEEEEeCC
Confidence            8764221             1233778899999999988643

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.08  E-value=0.01  Score=50.84  Aligned_cols=94  Identities=20%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc-cCCc------c----
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDTK------L----  162 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~-~~~~------~----  162 (278)
                      +..++.+||-+|+|. |..+..+++. |+ +|+++|.++...+.+++    .|.+.  ++..+- .+..      .    
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~--~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGADV--TLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCSE--EEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCE--EEcCcccccHHHHHHHHhcccc
Confidence            457889999999864 5566666664 76 69999999998888864    34332  222110 1110      1    


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ...+|+++.....             ...++.+.++|+|+|+++...
T Consensus       238 g~g~D~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          238 GDLPNVTIDCSGN-------------EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSCCSEEEECSCC-------------HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCCC-------------HHHHHHHHHHHhcCCEEEEEe
Confidence            2468999864321             112367888999999998864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.03  E-value=0.0076  Score=51.48  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc--ccCC----ccCCCcc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD--VLDT----KLERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d--~~~~----~~~~~fD  167 (278)
                      ...++.+||-+|+|. |..+..+++. |..+|+++|.++.-.+.+++    .|.+.  ++..+  ..+.    .....+|
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA--AVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE--EEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE--EEcCCCcHHHHHHHHhCCCCCe
Confidence            567889999999865 5666677765 45699999999999888875    34332  22211  1110    0123799


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+..-.-             ...++.+.++|+++|++++...
T Consensus       242 ~v~d~~G~-------------~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          242 AVFDFVGA-------------QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             EEEESSCC-------------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEECCCC-------------HHHHHHHHHHHhcCCEEEEECC
Confidence            99864221             1133788899999999988753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.00  E-value=0.015  Score=49.96  Aligned_cols=95  Identities=19%  Similarity=0.152  Sum_probs=61.9

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQ  165 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~  165 (278)
                      .+..++.+||-+|+|. |..+..+++. |+ +|+++|.++..++.+++.    |...  ++..+-.+..       ....
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~v~~~~~g~g  257 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GADH--GINRLEEDWVERVYALTGDRG  257 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCSE--EEETTTSCHHHHHHHHHTTCC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCCE--EEcCCcccHHHHHHHHhCCCC
Confidence            3457889999999764 5566666665 75 899999999988887653    3322  2222211111       1237


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+|+....-.              .+..+.++|+|+|++++...
T Consensus       258 ~D~vid~~g~~--------------~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          258 ADHILEIAGGA--------------GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EEEEEEETTSS--------------CHHHHHHHEEEEEEEEEECC
T ss_pred             ceEEEECCChH--------------HHHHHHHHhhcCCEEEEEec
Confidence            99998643211              12678889999999998753

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.00  E-value=0.034  Score=45.36  Aligned_cols=104  Identities=11%  Similarity=0.102  Sum_probs=69.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC--------CCCcEEEEe-----CChH----------------------HHHHH---HH
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVD-----YSED----------------------AINLA---QS  140 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~~~D-----~s~~----------------------~i~~a---~~  140 (278)
                      -++.|+|+||-.|..+..++..        ...+|+++|     ..+.                      .++..   .+
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            3459999999999888776541        135899999     3211                      12211   11


Q ss_pred             HhhhCCC--cceEEEEccccCCcc-------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          141 LANRDGF--SCIKFLVDDVLDTKL-------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       141 ~~~~~~~--~~~~~~~~d~~~~~~-------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +....+.  ++++++.+++.+..+       ..+||+++...-         .......+++.+...|+|||++++...+
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---------~Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---------LYEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---------CHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---------ccchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            2223333  469999999977421       346888886542         1235567779999999999999998864

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.88  E-value=0.013  Score=49.39  Aligned_cols=90  Identities=14%  Similarity=0.205  Sum_probs=58.7

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      .+..++.+||-+|+|. |..+..+++. |+ +|++++ ++...+.+++.    |.+  .++ .|...  ..+.+|+++..
T Consensus       138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga~--~v~-~d~~~--v~~g~Dvv~d~  206 (315)
T 3goh_A          138 IPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GVR--HLY-REPSQ--VTQKYFAIFDA  206 (315)
T ss_dssp             SCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TEE--EEE-SSGGG--CCSCEEEEECC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CCC--EEE-cCHHH--hCCCccEEEEC
Confidence            3457889999999953 5666667665 76 899999 99888888763    322  122 24211  15678988853


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      -.-.              .+..+.++|+|+|+++...
T Consensus       207 ~g~~--------------~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          207 VNSQ--------------NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             ---------------------TTGGGEEEEEEEEEEC
T ss_pred             CCch--------------hHHHHHHHhcCCCEEEEEe
Confidence            2111              1156788999999998874

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.84  E-value=0.18  Score=40.95  Aligned_cols=110  Identities=12%  Similarity=0.020  Sum_probs=71.9

Q ss_pred             CCCeEEEEecC--CC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .++++|-.|++  +|   .++..|++.|+ +|+.++.++...+.+.+.....+-.++.++.+|+.+...           
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            56789999976  44   35667777786 799999988766666666555543368999999988631           


Q ss_pred             CCCccEEEeCCcccee-----ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .++.|+++.+..+...     .+........           ..+++.+...++++|.++..+
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence            1478999887654220     0111111111           234567777888889887764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.77  E-value=0.012  Score=50.82  Aligned_cols=96  Identities=18%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCCc------cCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~~------~~~  164 (278)
                      .+..++.+||-+|+|. |..+..+++. |+.+|+++|.++...+.+++    .|.+.  ++..+-  .+..      ..+
T Consensus       187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATE--CLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHTTS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcE--EEecccccchHHHHHHHHhCC
Confidence            3457889999999854 5566666665 76589999999998888864    34322  221110  1110      124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  209 (278)
                      .+|+|+..-.-             ...++.+.++|+++ |++++..
T Consensus       261 g~Dvvid~~g~-------------~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          261 GVDYAVECAGR-------------IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             CBSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCEEEECCCC-------------HHHHHHHHHHHhcCCCEEEEEc
Confidence            79999864221             12237788999999 9998765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.73  E-value=0.012  Score=50.87  Aligned_cols=97  Identities=15%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCCc------cCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~~------~~~  164 (278)
                      .+..++.+||-+|+|. |..+..+++. |+.+|+++|.++..++.+++    .|.+.  ++...-  .+..      ..+
T Consensus       188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGATD--FVNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCCE--EECGGGCSSCHHHHHHHHHTS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCce--EEeccccchhHHHHHHHHhCC
Confidence            3457889999999754 5566666664 65589999999998888864    34322  221110  0110      124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  210 (278)
                      .+|+|+..-..             ...++.+.++|+++ |++++...
T Consensus       262 g~D~vid~~g~-------------~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          262 GVDFSLECVGN-------------VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CBSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCC-------------HHHHHHHHHHhhcCCcEEEEEcC
Confidence            68998864221             12237888999999 99988653

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.72  E-value=0.017  Score=50.04  Aligned_cols=97  Identities=20%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc--ccCCc------cCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD--VLDTK------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d--~~~~~------~~~  164 (278)
                      .+..++.+||-+|+|. |..+..+++. |+.+|+++|.++.-++.+++    .|.+.  ++...  -.+..      ..+
T Consensus       189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVNE--FVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCCE--EECGGGCSSCHHHHHHHHTTS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCcE--EEccccCchhHHHHHHHhcCC
Confidence            3457889999999863 5666666665 76689999999998888764    44322  22211  01110      134


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  210 (278)
                      .+|+|+..-.-             ...++.+.++|++| |++++...
T Consensus       263 g~D~vid~~g~-------------~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          263 GVDYSFECIGN-------------VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CBSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCC-------------HHHHHHHHHHhhccCCEEEEEcc
Confidence            79999864221             12337888999997 99988753

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.72  E-value=0.082  Score=44.92  Aligned_cols=104  Identities=15%  Similarity=0.215  Sum_probs=73.5

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC---------------------CcceEEEEcc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---------------------FSCIKFLVDD  156 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~---------------------~~~~~~~~~d  156 (278)
                      +...|+.+|||.......+... +...++-+|. |..++.-++.+...+                     -++..++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4568999999999999888874 2236667776 888887777766541                     1468899999


Q ss_pred             ccCCcc----------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          157 VLDTKL----------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       157 ~~~~~~----------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.+...          .....++++-+++..+.     +.....+++.+.+.. |+|.+++.+
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~-----~~~~~~ll~~ia~~~-~~~~~v~~e  232 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMH-----NNESQLLINTIMSKF-SHGLWISYD  232 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-----HHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC-----HHHHHHHHHHHHhhC-CCcEEEEEe
Confidence            987421          13456777777766554     667778888888876 777776544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=95.65  E-value=0.12  Score=44.64  Aligned_cols=99  Identities=15%  Similarity=0.046  Sum_probs=70.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCccCCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      .+.+||.++.+.|.++..++..+   ++.+.-|-.+-..++.|+..++++.  +++...  .+ .....||+|+..-+  
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~-~~~~~~~~v~~~lp--  109 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYPQQPGVVLIKVP--  109 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS-CCCSSCSEEEEECC--
T ss_pred             CCCCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc-ccccCCCEEEEEcC--
Confidence            45689999999999999998653   4445447777778889999988754  554332  22 23567898875322  


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                            .........|..+...|+||+.+++...+
T Consensus       110 ------k~~~~l~~~L~~l~~~l~~~~~i~~~g~~  138 (375)
T 4dcm_A          110 ------KTLALLEQQLRALRKVVTSDTRIIAGAKA  138 (375)
T ss_dssp             ------SCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred             ------CCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence                  23345667779999999999999887643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.64  E-value=0.017  Score=49.98  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             cCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc------ccCC----ccCC
Q 023703           97 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD------VLDT----KLER  164 (278)
Q Consensus        97 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d------~~~~----~~~~  164 (278)
                      ..++.+||-+|+|. |..+..+++. |+.+|+++|.++..++.+++    .|.+.  ++..+      +.+.    ....
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~v~~~~~g~  266 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADL--TLNRRETSVEERRKAIMDITHGR  266 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCcE--EEeccccCcchHHHHHHHHhCCC
Confidence            66789999999653 4555566654 64589999999998888864    34322  22221      1110    0123


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+|+|+......             ..++.+.++|+++|+++....
T Consensus       267 g~Dvvid~~g~~-------------~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          267 GADFILEATGDS-------------RALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             CEEEEEECSSCT-------------THHHHHHHHEEEEEEEEECCC
T ss_pred             CCcEEEECCCCH-------------HHHHHHHHHHhcCCEEEEEec
Confidence            699998643211             122678889999999988653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.60  E-value=0.079  Score=38.70  Aligned_cols=97  Identities=10%  Similarity=0.090  Sum_probs=59.0

Q ss_pred             CeEEEEecCC-C-HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeCC
Q 023703          101 WSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKG  173 (278)
Q Consensus       101 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~~  173 (278)
                      .+|+=+|||. | .++..|...|. +|+++|.++..++.+++    .   .+.++.+|..+...     -..+|+++..-
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence            4788888854 2 22333444565 89999999999887764    2   46778899876431     24678777532


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      .-         ...... +....+.+.|+..++....+....
T Consensus        80 ~~---------~~~n~~-~~~~a~~~~~~~~iiar~~~~~~~  111 (140)
T 3fwz_A           80 PN---------GYEAGE-IVASARAKNPDIEIIARAHYDDEV  111 (140)
T ss_dssp             SC---------HHHHHH-HHHHHHHHCSSSEEEEEESSHHHH
T ss_pred             CC---------hHHHHH-HHHHHHHHCCCCeEEEEECCHHHH
Confidence            21         111121 233556677888777665544333

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.55  E-value=0.015  Score=50.20  Aligned_cols=97  Identities=15%  Similarity=0.103  Sum_probs=61.6

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCCc------cCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~~------~~~  164 (278)
                      .+..++.+||-+|+|. |.++..+++. |+.+|+++|.++...+.+++    .|.+.  ++..+-  .+..      ..+
T Consensus       191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATD--CLNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHHTS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCcE--EEccccccchHHHHHHHHhCC
Confidence            3456889999999753 4556666664 66589999999998888764    34322  121110  0110      124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  210 (278)
                      .+|+|+..-.-             ...++.+.++|+++ |++++...
T Consensus       265 g~Dvvid~~G~-------------~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          265 GVDYSLDCAGT-------------AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CBSEEEESSCC-------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CccEEEECCCC-------------HHHHHHHHHHhhcCCCEEEEECC
Confidence            78998864221             12337888999999 99987643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.51  E-value=0.0059  Score=52.51  Aligned_cols=94  Identities=20%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcccc-CCc--cCCCccEEE
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL-DTK--LERQFQLVM  170 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~-~~~--~~~~fD~v~  170 (278)
                      +..++.+||-+|+|. |..+..+++. |+ +|+++|.++..++.+++.    |...  ++..+-. +..  ..+.+|+|+
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GADH--YIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCSE--EEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----CCCE--EEcCcCchHHHHHhhcCCCEEE
Confidence            457889999999843 4556666664 76 799999999988888752    3222  2221111 110  114799998


Q ss_pred             eCCcc--ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTL--DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..-..  ...             ++.+.++|+++|+++...
T Consensus       249 d~~g~~~~~~-------------~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          249 VCASSLTDID-------------FNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             ECCSCSTTCC-------------TTTGGGGEEEEEEEEECC
T ss_pred             ECCCCCcHHH-------------HHHHHHHhcCCCEEEEec
Confidence            64332  111             156788999999988764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.50  E-value=0.043  Score=47.28  Aligned_cols=96  Identities=18%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCCc------cCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~~------~~~  164 (278)
                      .+..++.+||-+|+|. |.++..+++. |+.+|+++|.++...+.+++.    |...  ++...-  .+..      ..+
T Consensus       186 ~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GATE--CINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCSE--EECGGGCSSCHHHHHHHHTTS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCce--EeccccccccHHHHHHHHhCC
Confidence            3457889999999754 4556666665 765899999999988888753    3221  221110  0110      124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  209 (278)
                      .+|+|+..-.-             ...++.+.++|+++ |++++..
T Consensus       260 g~D~vid~~g~-------------~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          260 GVDYSFECIGN-------------VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             CBSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCCEEEECCCc-------------HHHHHHHHHhhccCCcEEEEEe
Confidence            68998864221             12237788999999 9998865

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.46  E-value=0.012  Score=50.94  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=61.1

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCCc------cCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~~------~~~  164 (278)
                      .+..++.+||-+|+|. |..+..+++. |+.+|+++|.++..++.+++    .|...  ++..+-  .+..      ..+
T Consensus       187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATE--CVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHTTS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCce--EecccccchhHHHHHHHHhCC
Confidence            3456889999999764 5556666654 65589999999998888864    34321  221110  0110      124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  209 (278)
                      .+|+|+..-.-             ...++.+.++|+++ |++++..
T Consensus       261 g~D~vid~~g~-------------~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          261 GVDFSFEVIGR-------------LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             CBSEEEECSCC-------------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             CCcEEEECCCC-------------HHHHHHHHHHhhcCCcEEEEec
Confidence            68998864221             12237788999999 9998764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.45  E-value=0.041  Score=46.01  Aligned_cols=108  Identities=16%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhh-----CCCC--cEEEEeCCh--------H-HHHHHHHHhhhC---CCc--ceEEEEccc
Q 023703           99 SSWSVLDIGTGNGLLLQELSK-----QGFS--DLTGVDYSE--------D-AINLAQSLANRD---GFS--CIKFLVDDV  157 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~-----~~~~--~v~~~D~s~--------~-~i~~a~~~~~~~---~~~--~~~~~~~d~  157 (278)
                      +.-+|||+|-|+|........     ....  +++.+|..+        . .-+..+......   .-.  .+++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            345899999999976543221     1212  466776422        1 112222222211   111  356788898


Q ss_pred             cCCcc---CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          158 LDTKL---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       158 ~~~~~---~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+.-.   ..+||+++.++    +.-......-...+++.+.++++|||++.--+.
T Consensus       176 ~~~l~~l~~~~~Da~flDg----FsP~kNPeLWs~e~f~~l~~~~~pgg~laTYta  227 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDA----FSPYKNPELWTLDFLSLIKERIDEKGYWVSYSS  227 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECC----SCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCC
T ss_pred             HHHHhhhcccceeEEEeCC----CCcccCcccCCHHHHHHHHHHhCCCcEEEEEeC
Confidence            76422   24789998754    211111122335788999999999998764433

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=95.43  E-value=0.24  Score=41.51  Aligned_cols=106  Identities=9%  Similarity=0.061  Sum_probs=77.0

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC---cceEEEEccccCCcc-----CC-----Ccc
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKL-----ER-----QFQ  167 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~~-----~~-----~fD  167 (278)
                      .-|+++|||-=.....+.......++-+| .|..++..++.+...+.   .+..++.+|+.+ ..     ..     ..=
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            46999999988887777632124789999 59999999988875321   358889999987 31     11     223


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ++++-+++.++.     +.....+++.+...+.||+.+++...+..
T Consensus       182 ~~i~Egvl~Yl~-----~~~~~~ll~~l~~~~~~gs~l~~d~~~~~  222 (310)
T 2uyo_A          182 AWLAEGLLMYLP-----ATAQDGLFTEIGGLSAVGSRIAVETSPLH  222 (310)
T ss_dssp             EEEECSCGGGSC-----HHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             EEEEechHhhCC-----HHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence            566666665553     55777888999999999999999876554

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.42  E-value=0.081  Score=46.14  Aligned_cols=101  Identities=18%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-------ccCCCc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-------~~~~~f  166 (278)
                      +..++.+||-+|+|. |..+..+++. |+.+|+++|.++.-++.+++.    |..  .++..+-.+.       .....+
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~i~~~t~g~g~  283 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD--HVIDPTKENFVEAVLDYTNGLGA  283 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS--EEECTTTSCHHHHHHHHTTTCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC--EEEcCCCCCHHHHHHHHhCCCCC
Confidence            467889999999853 4555566654 766899999999999888763    322  1222111111       012369


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |+|+..-.-.        .......++.+.+.++++|++++...
T Consensus       284 D~vid~~g~~--------~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          284 KLFLEATGVP--------QLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             SEEEECSSCH--------HHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CEEEECCCCc--------HHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            9998642211        00111122223344599999998753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.40  E-value=0.27  Score=40.27  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=70.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC------------hHHHHHHHHHhhhCCCcceEEEEccccCCcc-
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s------------~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-  162 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.+|.+            ...++.+...+...+ .++.++.+|+.+... 
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCCCHHHH
Confidence            5678888888766   35556677786 89999987            666666666665555 368899999987531 


Q ss_pred             ----------CCCccEEEeCCccceeccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 ----------ERQFQLVMDKGTLDAIGLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ----------~~~fD~v~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                                .++.|+++.+..+...... ......           ..+++.+...|+.+|.++..+
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICPLGAH-LPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCTT-CCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCcccCc-CCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence                      1478999987654322211 111111           234466777788888887764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.35  E-value=0.031  Score=43.44  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=57.7

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cC
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LE  163 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~  163 (278)
                      +..++.+||..|+  |.|..+..++.. |+ +|+++|.++...+.+++    .+...  ..  |..+..         ..
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~~--~~--d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVEY--VG--DSRSVDFADEILELTDG  105 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCSE--EE--ETTCSTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCE--Ee--eCCcHHHHHHHHHHhCC
Confidence            4467889999995  344555554443 75 89999999987776643    33221  11  322211         12


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..+|+++.+..-              ..++.+.+.|+|+|+++....
T Consensus       106 ~~~D~vi~~~g~--------------~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          106 YGVDVVLNSLAG--------------EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             CCEEEEEECCCT--------------HHHHHHHHTEEEEEEEEECSC
T ss_pred             CCCeEEEECCch--------------HHHHHHHHHhccCCEEEEEcC
Confidence            368998864321              123778899999999988653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.32  E-value=0.034  Score=47.62  Aligned_cols=93  Identities=18%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             ccCCC------CeEEEEecCC-CHHH-HHHh-hC-CCCcEEEEeCChH---HHHHHHHHhhhCCCcceEEEEccccCCcc
Q 023703           96 KYLSS------WSVLDIGTGN-GLLL-QELS-KQ-GFSDLTGVDYSED---AINLAQSLANRDGFSCIKFLVDDVLDTKL  162 (278)
Q Consensus        96 ~~~~~------~~vLDiGcG~-G~~~-~~l~-~~-~~~~v~~~D~s~~---~i~~a~~~~~~~~~~~~~~~~~d~~~~~~  162 (278)
                      +..++      .+||-+|+|. |.++ ..++ +. |+.+|+++|.++.   ..+.+++    .|.+.+     |..+...
T Consensus       163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~~v-----~~~~~~~  233 (357)
T 2b5w_A          163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDATYV-----DSRQTPV  233 (357)
T ss_dssp             HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTCEEE-----ETTTSCG
T ss_pred             CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCCccc-----CCCccCH
Confidence            34677      8999999843 4566 6677 54 7645999999988   7787764    343222     2222111


Q ss_pred             ------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          163 ------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       163 ------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                            .+.+|+|+..-.-             ...++.+.++|+++|+++....
T Consensus       234 ~~i~~~~gg~Dvvid~~g~-------------~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          234 EDVPDVYEQMDFIYEATGF-------------PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             GGHHHHSCCEEEEEECSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHHHhCCCCCEEEECCCC-------------hHHHHHHHHHHhcCCEEEEEeC
Confidence                  2368888863221             1123778899999999988653

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=95.15  E-value=0.054  Score=46.88  Aligned_cols=76  Identities=14%  Similarity=0.212  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCHHHHHHhhC--------CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEe
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  171 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~--------~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  171 (278)
                      +..|+|+|.|+|.++..+.+.        ...+++.||+|+...+.-++++...+  ++.+. .++.+.+.  ..-+|++
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~--~v~W~-~~l~~lp~--~~~~viA  155 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR--NIHWH-DSFEDVPE--GPAVILA  155 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCS--SEEEE-SSGGGSCC--SSEEEEE
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCC--CeEEe-CChhhcCC--CCeEEEe
Confidence            357999999999998776542        11279999999999887776665432  45543 23333221  2447888


Q ss_pred             CCccceecc
Q 023703          172 KGTLDAIGL  180 (278)
Q Consensus       172 ~~~~~~~~~  180 (278)
                      |..||++++
T Consensus       156 NE~fDAlPv  164 (387)
T 1zkd_A          156 NEYFDVLPI  164 (387)
T ss_dssp             ESSGGGSCC
T ss_pred             ccccccCce
Confidence            888887764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.12  E-value=0.031  Score=47.52  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=61.1

Q ss_pred             cccCCCCeEEEEecCC--CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCC
Q 023703           95 DKYLSSWSVLDIGTGN--GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~  164 (278)
                      .+..++.+||-+|+|+  |..+..+++. |+ +|+++|.++..++.+++.    |..  ..+...-.+..       ...
T Consensus       140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~--~~~~~~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          140 LNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA--YVIDTSTAPLYETVMELTNGI  212 (340)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTS
T ss_pred             cccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc--EEEeCCcccHHHHHHHHhCCC
Confidence            3567889999999874  5666666665 76 899999999988888763    322  12221111110       124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+|+++....-.          ..    ....++|+++|++++...
T Consensus       213 g~Dvvid~~g~~----------~~----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          213 GADAAIDSIGGP----------DG----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             CEEEEEESSCHH----------HH----HHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCCCh----------hH----HHHHHHhcCCCEEEEEee
Confidence            799998743321          11    334589999999988753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.04  E-value=0.37  Score=39.00  Aligned_cols=111  Identities=16%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             CCCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------
Q 023703           98 LSSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------  162 (278)
                      .+++++|--|+++  |   ..+..|++.|+ +|+.+|.++...+.+.+.++..+-.++.++.+|+.+...          
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3678999999643  4   35667788886 899999999888888877776554468889999987521          


Q ss_pred             -CCCccEEEeCCccceec-c----CCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 -ERQFQLVMDKGTLDAIG-L----HPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~~-~----~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       -++.|+++.+..+.... .    .....++.           ....+.+...++.+|.++..+
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence             26789998875432211 0    11111111           122244566778899987764

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.95  E-value=0.014  Score=48.76  Aligned_cols=62  Identities=24%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             ceEEEEccccCCc---cCCCccEEEeCCccceec-cC--CCC----------hhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          149 CIKFLVDDVLDTK---LERQFQLVMDKGTLDAIG-LH--PDG----------PLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       149 ~~~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~-~~--~~~----------~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+.++++|+.+..   .+++||+|+++++|.... ..  ...          ......+++++.++|||||.+++...
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            5789999998732   357899999999985321 00  000          01124567899999999999988765

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.93  E-value=0.059  Score=45.43  Aligned_cols=95  Identities=24%  Similarity=0.201  Sum_probs=61.6

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCC
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~  164 (278)
                      .+..++.+||-.|+  |.|..+..+++. |+ +|++++.++..++.+++.    |..  ..+..+-.+..       ...
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~--~~~~~~~~~~~~~~~~~~~~~  208 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAW--ETIDYSHEDVAKRVLELTDGK  208 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTC
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--EEEeCCCccHHHHHHHHhCCC
Confidence            34578899999983  445666666665 76 899999999988888753    322  12222111110       124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+|+++....-.              .+..+.++|+++|++++...
T Consensus       209 g~Dvvid~~g~~--------------~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          209 KCPVVYDGVGQD--------------TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             CEEEEEESSCGG--------------GHHHHHTTEEEEEEEEECCC
T ss_pred             CceEEEECCChH--------------HHHHHHHHhcCCCEEEEEec
Confidence            699998753321              22678899999999988753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.91  E-value=0.38  Score=34.82  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             CCeEEEEecCCCHHHHHH----hhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEE
Q 023703          100 SWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l----~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      ..+|+-+|||  .++..+    ...|. +|+++|.++..++.+++       ..+.++.+|..+...     -..+|+++
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGK-KVLAVDKSKEKIELLED-------EGFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH-------TTCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH-------CCCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            3579999985  455544    44575 89999999998877764       235778889877431     24678777


Q ss_pred             eC
Q 023703          171 DK  172 (278)
Q Consensus       171 ~~  172 (278)
                      ..
T Consensus        76 ~~   77 (141)
T 3llv_A           76 IT   77 (141)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.90  E-value=0.071  Score=45.26  Aligned_cols=93  Identities=17%  Similarity=0.195  Sum_probs=60.5

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~f  166 (278)
                      +..++.+||-+|+|. |..+..+++. |+ +|+++|.++..++.+++    .|...  +  .|..+...       .+.+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~--~--~d~~~~~~~~~~~~~~~~~  231 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGADL--V--VNPLKEDAAKFMKEKVGGV  231 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCSE--E--ECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCCE--E--ecCCCccHHHHHHHHhCCC
Confidence            457889999999953 5555555554 75 89999999998888764    34321  1  13222110       1468


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |+++.....             ...++.+.++|+++|+++....
T Consensus       232 d~vid~~g~-------------~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          232 HAAVVTAVS-------------KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             EEEEESSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC-------------HHHHHHHHHHhhcCCEEEEecc
Confidence            988864321             1123778889999999987643

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.88  E-value=0.055  Score=46.15  Aligned_cols=95  Identities=20%  Similarity=0.145  Sum_probs=59.7

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCCCc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~f  166 (278)
                      +. ++.+||-+|+|. |..+..+++. |+.+|+++|.++..++.+++.    |...  ++..+-.+..       ....+
T Consensus       165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~~--~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GADY--VINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCSE--EECTTTSCHHHHHHHHTTTSCE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCE--EECCCCcCHHHHHHHHcCCCCC
Confidence            45 788999999853 4555555554 655899999999988888753    3221  2211111110       12368


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |+++..-..             ...++.+.++|+++|+++....
T Consensus       238 D~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          238 DVFLEFSGA-------------PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEECSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC-------------HHHHHHHHHHHhcCCEEEEEcc
Confidence            999864321             1223778889999999887643

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.87  E-value=0.087  Score=44.77  Aligned_cols=91  Identities=22%  Similarity=0.273  Sum_probs=60.7

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------c-C
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-E  163 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--------~-~  163 (278)
                      +..++.+||-.|+  |.|..+..++.. |+ +|+++|.++..++.+++.    |...  ++  |..+..        . .
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga~~--~~--d~~~~~~~~~~~~~~~~  233 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GADE--TV--NYTHPDWPKEVRRLTGG  233 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCSE--EE--ETTSTTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCCE--EE--cCCcccHHHHHHHHhCC
Confidence            4567899999998  456666666654 76 899999999988888642    3221  12  222211        1 2


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..+|+++.... ..             .++.+.++|+++|+++...
T Consensus       234 ~~~d~vi~~~g-~~-------------~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          234 KGADKVVDHTG-AL-------------YFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TCEEEEEESSC-SS-------------SHHHHHHHEEEEEEEEESS
T ss_pred             CCceEEEECCC-HH-------------HHHHHHHhhccCCEEEEEe
Confidence            46999987543 11             1267888999999988764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.86  E-value=0.039  Score=46.79  Aligned_cols=95  Identities=14%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCC
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQ  165 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~  165 (278)
                      .+..++.+||-.|+  |.|..+..++.. |+ +|+++|.++..++.+.+.   .|..  ..+...-.+..      ..+.
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEE---LGFD--GAIDYKNEDLAAGLKRECPKG  218 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---TCCS--EEEETTTSCHHHHHHHHCTTC
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCC--EEEECCCHHHHHHHHHhcCCC
Confidence            35678899999998  445666666654 76 899999999888877332   3332  11211111110      1346


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|+++.+..-              ..+..+.+.|+++|++++..
T Consensus       219 ~d~vi~~~g~--------------~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          219 IDVFFDNVGG--------------EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             EEEEEESSCH--------------HHHHHHHTTEEEEEEEEECC
T ss_pred             ceEEEECCCc--------------chHHHHHHHHhhCCEEEEEe
Confidence            8988864321              13478889999999998864

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.85  E-value=0.033  Score=47.37  Aligned_cols=96  Identities=20%  Similarity=0.246  Sum_probs=60.6

Q ss_pred             ccCCCCeEEEEecCCC-HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-------ccCCCc
Q 023703           96 KYLSSWSVLDIGTGNG-LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G-~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-------~~~~~f  166 (278)
                      ...++.+||-.|+|.. .++..+++. |+..++++|.++.-++.+++    .|..  ..+...-.+.       .....+
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~--~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM--QTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHGGGCSS
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe--EEEeCCCCCHHHHHHhhcccCCc
Confidence            4578899999998653 344455554 77678999999998888875    4432  2222221111       112457


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |+|+.....             ...++.+.++|++||.+++...
T Consensus       231 d~v~d~~G~-------------~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          231 QLILETAGV-------------PQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             EEEEECSCS-------------HHHHHHHHHHCCTTCEEEECCC
T ss_pred             ccccccccc-------------cchhhhhhheecCCeEEEEEec
Confidence            887753221             1223678899999999988753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.74  E-value=0.0083  Score=51.23  Aligned_cols=93  Identities=16%  Similarity=0.219  Sum_probs=59.4

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEE----ccccC-CccCCCc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV----DDVLD-TKLERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~----~d~~~-~~~~~~f  166 (278)
                      +. ++.+||-+|+|. |..+..+++.   |+ +|+++|.++...+.+++.    |.+.  ++.    .|... ......+
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GADY--VSEMKDAESLINKLTDGLGA  239 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCSE--EECHHHHHHHHHHHHTTCCE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCCE--EeccccchHHHHHhhcCCCc
Confidence            55 889999999853 4555566553   55 799999999988888753    3222  111    11110 1112369


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+|+..-.-             ...++.+.++|+|+|+++...
T Consensus       240 D~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          240 SIAIDLVGT-------------EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEESSCC-------------HHHHHHHHHHEEEEEEEEECC
T ss_pred             cEEEECCCC-------------hHHHHHHHHHhhcCCEEEEeC
Confidence            999864321             112377889999999988764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.69  E-value=0.059  Score=45.62  Aligned_cols=93  Identities=18%  Similarity=0.198  Sum_probs=60.4

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCCC
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~  165 (278)
                      +..++.+||-+|+  |.|..+..+++. |+ +|++++.++..++.+++    .|..  .++..+-.+..       ....
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~--~~~~~~~~~~~~~~~~~~~~~g  217 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE--YLINASKEDILRQVLKFTNGKG  217 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHTTTSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc--EEEeCCCchHHHHHHHHhCCCC
Confidence            5578899999995  445556666654 75 89999999998887765    3322  12222111111       1346


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|+++.+..-.              .++.+.++|+++|++++..
T Consensus       218 ~D~vid~~g~~--------------~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          218 VDASFDSVGKD--------------TFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             EEEEEECCGGG--------------GHHHHHHHEEEEEEEEECC
T ss_pred             ceEEEECCChH--------------HHHHHHHHhccCCEEEEEc
Confidence            99998753321              2367888999999998864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.68  E-value=0.056  Score=46.00  Aligned_cols=93  Identities=19%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------c-CC
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------L-ER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~-~~  164 (278)
                      .+..++.+||-.|+  |.|..+..+++. |+ +|++++.++...+.+++.    |..  .++..+ .+..      . ..
T Consensus       155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~--~v~~~~-~~~~~~v~~~~~~~  226 (342)
T 4eye_A          155 GQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD--IVLPLE-EGWAKAVREATGGA  226 (342)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEESS-TTHHHHHHHHTTTS
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc--EEecCc-hhHHHHHHHHhCCC
Confidence            34578899999997  445666666665 76 899999999988888763    322  222222 2211      1 23


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+|+++....-.              .+..+.++|+++|++++..
T Consensus       227 g~Dvvid~~g~~--------------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          227 GVDMVVDPIGGP--------------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             CEEEEEESCC----------------CHHHHHHTEEEEEEEEEC-
T ss_pred             CceEEEECCchh--------------HHHHHHHhhcCCCEEEEEE
Confidence            699998743321              2367888999999998864

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=94.66  E-value=0.061  Score=47.16  Aligned_cols=75  Identities=21%  Similarity=0.401  Sum_probs=50.4

Q ss_pred             CCeEEEEecCCCHHHHHHhhC----C--CCcEEEEeCChHHHHHHHHHhhhCC--C-cceEEEEccccCCccCCCcc-EE
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQ-LV  169 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~----~--~~~v~~~D~s~~~i~~a~~~~~~~~--~-~~~~~~~~d~~~~~~~~~fD-~v  169 (278)
                      ...|+|+|.|+|.++..+.+.    +  ..+++.||+|+...+.-++++....  + .++.+.. ++     ++.+. +|
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~-~l-----P~~~~g~i  211 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD-AL-----PERFEGVV  211 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES-SC-----CSCEEEEE
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc-cC-----CccCceEE
Confidence            469999999999988776542    2  2379999999999888888776421  1 2455532 21     12233 67


Q ss_pred             EeCCccceecc
Q 023703          170 MDKGTLDAIGL  180 (278)
Q Consensus       170 ~~~~~~~~~~~  180 (278)
                      ++|..||++++
T Consensus       212 iANE~fDAlPv  222 (432)
T 4f3n_A          212 VGNEVLDAMPV  222 (432)
T ss_dssp             EEESCGGGSCC
T ss_pred             EeehhhccCce
Confidence            77777776653

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.60  E-value=0.13  Score=48.99  Aligned_cols=44  Identities=18%  Similarity=0.151  Sum_probs=37.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC------CCcEEEEeCChHHHHHHHHHh
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLA  142 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~~D~s~~~i~~a~~~~  142 (278)
                      +..+|+|+.||.|.++.-+.+.|      +..+.++|+++.+++--+.|+
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            34589999999999998887764      456889999999999888875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.56  E-value=0.06  Score=45.55  Aligned_cols=91  Identities=15%  Similarity=0.184  Sum_probs=59.0

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-Cc--------cC
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK--------LE  163 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~~--------~~  163 (278)
                      +..++.+||-.||  |.|..+..++. .|+ +|+++|.++..++.+++    .+.. ..   .|..+ ..        ..
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~-~~---~d~~~~~~~~~~~~~~~~  212 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD-AA---FNYKTVNSLEEALKKASP  212 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS-EE---EETTSCSCHHHHHHHHCT
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc-EE---EecCCHHHHHHHHHHHhC
Confidence            4577899999998  44555555554 476 89999999988887743    2322 11   13322 11        12


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.+|+++.+..-              ..+..+.++|+++|++++..
T Consensus       213 ~~~d~vi~~~g~--------------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          213 DGYDCYFDNVGG--------------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             TCEEEEEESSCH--------------HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCeEEEECCCh--------------HHHHHHHHHHhcCCEEEEEe
Confidence            468988865331              12477889999999998764

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.53  E-value=0.37  Score=39.60  Aligned_cols=107  Identities=13%  Similarity=0.109  Sum_probs=71.9

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++.+|--|.+.|   ..+..|++.|+ +|+.+|.+++.++.+.+.+   + .++..+.+|+.+...           -
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G-GGAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46888898898877   45667777886 8999999998887765543   3 357788999987521           2


Q ss_pred             CCccEEEeCCcccee-ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAI-GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~-~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.|+++.+...... ++...+.++.           ....+.+...|+.+|.++...
T Consensus       102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A          102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            678999887644221 1222222222           234466777888888877753

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.46  E-value=0.35  Score=39.97  Aligned_cols=76  Identities=13%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-cc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~-----------~  163 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.++.++...+.+.+.+...+-.++.++.+|+.+. ..           .
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            4668888887665   34555666786 8999999998877777666655434689999999886 21           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            579999987654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.40  E-value=0.015  Score=50.08  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             CCCeEEEEe-c-CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc--cccCC---ccCCCccEEE
Q 023703           99 SSWSVLDIG-T-GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD--DVLDT---KLERQFQLVM  170 (278)
Q Consensus        99 ~~~~vLDiG-c-G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~--d~~~~---~~~~~fD~v~  170 (278)
                      ++.+||-+| + |.|..+..+++. +..+|+++|.++.-++.+++    .|.+.  ++..  |..+.   ...+.+|+|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~--vi~~~~~~~~~v~~~~~~g~Dvvi  244 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHH--VIDHSKPLAAEVAALGLGAPAFVF  244 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSE--EECTTSCHHHHHHTTCSCCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCCHHHHHHHhcCCCceEEE
Confidence            678999998 4 346777788875 44599999999998888865    34322  1211  11000   0135789888


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ....             ....++.+.++|+++|++++..
T Consensus       245 d~~g-------------~~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          245 STTH-------------TDKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             ECSC-------------HHHHHHHHHHHSCTTCEEEECS
T ss_pred             ECCC-------------chhhHHHHHHHhcCCCEEEEEC
Confidence            6322             1123477889999999998863

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=94.39  E-value=0.06  Score=52.26  Aligned_cols=75  Identities=12%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-----------------
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----------------  160 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----------------  160 (278)
                      ...+++|+.||.|.++..+...|+ ..+.++|+++.+++.-+.|+     ++..++..|+.++                 
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhhc
Confidence            345899999999999999988886 56889999999999888775     3445566654221                 


Q ss_pred             ccCCCccEEEeCCcccee
Q 023703          161 KLERQFQLVMDKGTLDAI  178 (278)
Q Consensus       161 ~~~~~fD~v~~~~~~~~~  178 (278)
                      +..+.+|+++...+-..+
T Consensus       614 p~~~~vDll~GGpPCQ~F  631 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPCQGF  631 (1002)
T ss_dssp             CCTTTCSEEEECCCCTTC
T ss_pred             ccCCCeeEEEEcCCCcch
Confidence            123568999987665444

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.28  E-value=0.87  Score=37.56  Aligned_cols=109  Identities=16%  Similarity=0.099  Sum_probs=69.6

Q ss_pred             CCCCeEEEEecCCC-----HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------
Q 023703           98 LSSWSVLDIGTGNG-----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G-----~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------  162 (278)
                      ..++++|-.|+++|     .++..|++.|+ +|+.++.++...+.+++.....+  ++.++.+|+.+...          
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH
Confidence            35778999997633     45666777786 79999999776666655544443  57889999987531          


Q ss_pred             -CCCccEEEeCCcccee-----ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 -ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       .++.|+++.+..+...     .+........           ..+++.+...|+.+|.++..+
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence             2578999987654220     0111111111           234466777777888887764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=94.19  E-value=0.35  Score=39.08  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.++..++...+.+   + .++.++.+|+.+...           .+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---G-PRVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5678898887766   35556677786 8999999998877766554   2 368899999987531           14


Q ss_pred             CccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.|+++.+....... +.....++.           ..+.+.+...++++|.++..+
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            789998876442211 111112121           234466677777888887764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.18  E-value=0.35  Score=39.31  Aligned_cols=76  Identities=16%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cC
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~  163 (278)
                      .+++.+|--|.+.|   ..+..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+..           .-
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG-YDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            36778888887776   45667777886 89999999998888877777766 36888999998752           13


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.|...
T Consensus        85 G~iDiLVNNAG~   96 (255)
T 4g81_D           85 IHVDILINNAGI   96 (255)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            678999987654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.13  E-value=0.37  Score=40.00  Aligned_cols=75  Identities=17%  Similarity=0.155  Sum_probs=56.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           .+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG-FDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            5678998888766   45556677786 89999999998888877776655 368899999987531           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus       108 ~id~lvnnAg~  118 (301)
T 3tjr_A          108 GVDVVFSNAGI  118 (301)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78999987654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.13  E-value=0.065  Score=45.53  Aligned_cols=92  Identities=15%  Similarity=0.167  Sum_probs=60.0

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC---Cc------cC
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---TK------LE  163 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~---~~------~~  163 (278)
                      +..++.+||-.|+  |.|..+..++.. |+ +|+++|.++..++.+++.   .|...  .+  |..+   ..      ..
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~~--~~--d~~~~~~~~~~~~~~~~  223 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFDD--AF--NYKEESDLTAALKRCFP  223 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCSE--EE--ETTSCSCSHHHHHHHCT
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCce--EE--ecCCHHHHHHHHHHHhC
Confidence            4568899999997  455556665554 75 899999999888877632   23221  11  2221   11      12


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +.+|+++.+..-              ..++.+.++|+++|++++..
T Consensus       224 ~~~d~vi~~~g~--------------~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          224 NGIDIYFENVGG--------------KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             TCEEEEEESSCH--------------HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCcEEEECCCH--------------HHHHHHHHHHhcCCEEEEEc
Confidence            468988865321              13478889999999998764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.08  E-value=0.71  Score=38.17  Aligned_cols=108  Identities=17%  Similarity=0.096  Sum_probs=69.1

Q ss_pred             CCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .++++|-.|+++  |   .++..|++.|+ +|+.+|.++...+.+.+.....+  .+.++.+|+.+...           
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            567899999864  4   35666777786 79999999876666555544443  46789999987531           


Q ss_pred             CCCccEEEeCCcccee-----ccCCCChhh-----------HHHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAI-----GLHPDGPLK-----------RIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~-----~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .++.|+++.+..+...     .+......+           ...+++.+...++.+|.++..+
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence            1578999987654221     011111111           1234566777778888887764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.94  E-value=0.13  Score=43.82  Aligned_cols=94  Identities=19%  Similarity=0.186  Sum_probs=60.2

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCC
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQ  165 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~  165 (278)
                      .+..++.+||-+|+  |.|..+..+++. |+ +|+++|.++..++.+++.    |..  ..+..+-.+..      ..+.
T Consensus       163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~~~~~~~~~~~~~~~~~~~~g  235 (353)
T 4dup_A          163 AGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK--RGINYRSEDFAAVIKAETGQG  235 (353)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHHSSC
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC--EEEeCCchHHHHHHHHHhCCC
Confidence            34578889998853  345566666654 76 899999999988888763    322  12221111110      1346


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|+++....-.              .+..+.+.|+++|++++..
T Consensus       236 ~Dvvid~~g~~--------------~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          236 VDIILDMIGAA--------------YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             EEEEEESCCGG--------------GHHHHHHTEEEEEEEEECC
T ss_pred             ceEEEECCCHH--------------HHHHHHHHhccCCEEEEEE
Confidence            99998753321              2367888999999998865

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.89  E-value=0.74  Score=37.93  Aligned_cols=109  Identities=15%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChH-HHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED-AINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~-~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.++.++. ..+.+.+.....+ .++.++.+|+.+...           .
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5678998887766   34556677786 7999998865 4444544444444 368899999987521           1


Q ss_pred             CCccEEEeCCcccee--ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAI--GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~--~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.|+++.+......  .+.....++.           ..+++.+.+.|+.+|.++..+
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            478999987543211  0111111111           345567777888889887764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.85  E-value=0.46  Score=38.37  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      ++++||-.|+..|   .++..|++ .|+ +|+.++.++...+.+.+.+...+ .++.++.+|+.+...           .
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            3567887775443   23444556 675 89999999887776666665544 368899999987521           1


Q ss_pred             CCccEEEeCCccceeccCCCC-hhhH-----------HHHHHHHHhcccCCcEEEEEec
Q 023703          164 RQFQLVMDKGTLDAIGLHPDG-PLKR-----------IMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~-~~~~-----------~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++|+++.+............ ..+.           ..+++.+.+.++++|.+++.+.
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence            378999877543221111111 1111           2344666677777788777643

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.79  E-value=0.63  Score=37.58  Aligned_cols=109  Identities=10%  Similarity=0.067  Sum_probs=68.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEE-eCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~-D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+ +.++...+.+.+.+...+ .++.++.+|+.+...           -
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG-RSALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT-SCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            5678898888766   35556677786 78777 777777776666665554 368899999987531           1


Q ss_pred             CCccEEEeCCcccee--ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAI--GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~--~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.|+++.+......  .+.....+..           ..+.+.+...++++|.++..+
T Consensus        85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            478999987643211  1111222221           234466677777788877764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.76  E-value=0.038  Score=46.59  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=57.5

Q ss_pred             eEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--ccCCCccEEEeCCccc
Q 023703          102 SVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KLERQFQLVMDKGTLD  176 (278)
Q Consensus       102 ~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~v~~~~~~~  176 (278)
                      +||-.|+  |.|..+..+++. |+ +|++++.++.-.+.+++.    |.+.+ +-..+....  ...+.+|+++..-.  
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~v-i~~~~~~~~~~~~~~~~d~v~d~~g--  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GANRI-LSRDEFAESRPLEKQLWAGAIDTVG--  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCSEE-EEGGGSSCCCSSCCCCEEEEEESSC--
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCCEE-EecCCHHHHHhhcCCCccEEEECCC--
Confidence            4999987  456677777765 76 899999999988888763    32221 111111111  12356888875321  


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                                .  ..+..+.++|+|+|+++....
T Consensus       221 ----------~--~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          221 ----------D--KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             ----------H--HHHHHHHHTEEEEEEEEECCC
T ss_pred             ----------c--HHHHHHHHHHhcCCEEEEEec
Confidence                      1  144788999999999988753

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.76  E-value=0.54  Score=37.94  Aligned_cols=75  Identities=12%  Similarity=0.139  Sum_probs=55.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.++...+...+.+...+ .++.++.+|+.+...           .+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5678888887766   34555666686 79999999988887777766655 368899999987531           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        89 ~id~lv~nAg~   99 (256)
T 3gaf_A           89 KITVLVNNAGG   99 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=93.64  E-value=1.3  Score=35.83  Aligned_cols=76  Identities=16%  Similarity=0.066  Sum_probs=55.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-CCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .++++|-.|++.|   .++..+++.|+ +|+.+|.++..++.+.+.+.. .+-.++.++.+|+.+...           .
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5678888888766   45556677786 799999999888777766654 332348899999987531           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+..+
T Consensus        86 g~id~lvnnAg~   97 (265)
T 3lf2_A           86 GCASILVNNAGQ   97 (265)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            578999987654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.64  E-value=0.0099  Score=50.73  Aligned_cols=94  Identities=17%  Similarity=0.109  Sum_probs=58.2

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCcc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD  167 (278)
                      +. ++.+||-+|+|. |..+..+++. |+.+|+++|.++..++.+++.     ...  ++..+-.+..      ....+|
T Consensus       162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-----a~~--v~~~~~~~~~~~~~~~~~~g~D  233 (343)
T 2dq4_A          162 GV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-----ADR--LVNPLEEDLLEVVRRVTGSGVE  233 (343)
T ss_dssp             CC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-----CSE--EECTTTSCHHHHHHHHHSSCEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-----HHh--ccCcCccCHHHHHHHhcCCCCC
Confidence            45 888999999843 4555566654 654899999999887776542     111  1111111110      034689


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++..-.-             ...++.+.++|+++|+++....
T Consensus       234 ~vid~~g~-------------~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          234 VLLEFSGN-------------EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEECSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence            98864321             1223778889999999887643

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=93.62  E-value=0.97  Score=36.26  Aligned_cols=76  Identities=13%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCCc-----------c
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK-----------L  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~~-----------~  162 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+..++.++..|+  .+..           .
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            5678888887665   34556667786 8999999998887776665544323578889998  4431           0


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+...
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2478999987654

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.59  E-value=0.17  Score=42.62  Aligned_cols=91  Identities=18%  Similarity=0.194  Sum_probs=58.8

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cC
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LE  163 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~  163 (278)
                      +..++.+||-.|+  |.|..+..++.. |+ +|+++|.++..++.+++.    +.. . .+  |..+..         ..
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~-~-~~--~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW-Q-VI--NYREEDLVERLKEITGG  207 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS-E-EE--ETTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC-E-EE--ECCCccHHHHHHHHhCC
Confidence            4567899999994  445555555554 76 899999999888877652    322 1 12  222211         12


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..+|+++.+..-           .   .++.+.++|+++|++++..
T Consensus       208 ~~~D~vi~~~g~-----------~---~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          208 KKVRVVYDSVGR-----------D---TWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CCEEEEEECSCG-----------G---GHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCch-----------H---HHHHHHHHhcCCCEEEEEe
Confidence            368998875431           1   1277889999999998764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.55  E-value=0.12  Score=44.02  Aligned_cols=93  Identities=16%  Similarity=0.288  Sum_probs=59.3

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------c
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------L  162 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~  162 (278)
                      .+..++.+||-.|+  |.|..+..++.. |+ +|++++.++..++.+++    .+..  ..+  |..+..         .
T Consensus       166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~--~~~--d~~~~~~~~~~~~~~~  236 (351)
T 1yb5_A          166 ACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH--EVF--NHREVNYIDKIKKYVG  236 (351)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEE--ETTSTTHHHHHHHHHC
T ss_pred             hCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC--EEE--eCCCchHHHHHHHHcC
Confidence            35578899999997  344555555544 75 89999999988886654    3322  112  222111         1


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ...+|+++.+..-              ..+..+.++|+++|++++...
T Consensus       237 ~~~~D~vi~~~G~--------------~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          237 EKGIDIIIEMLAN--------------VNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             TTCEEEEEESCHH--------------HHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCcEEEEECCCh--------------HHHHHHHHhccCCCEEEEEec
Confidence            2368998865321              123677899999999988653

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=93.53  E-value=0.029  Score=47.41  Aligned_cols=94  Identities=13%  Similarity=0.097  Sum_probs=57.0

Q ss_pred             cCCCC-eEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEcc--ccCCccCCCccEE
Q 023703           97 YLSSW-SVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD--VLDTKLERQFQLV  169 (278)
Q Consensus        97 ~~~~~-~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d--~~~~~~~~~fD~v  169 (278)
                      ..++. +||-+|+  |.|..+..+++. |+ +|++++.++..++.+++    .|.+. +.....+  .......+.+|++
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~d~v  220 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWAAA  220 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEEEE
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcEEEecCCcHHHHHHHhcCCcccEE
Confidence            45564 8999997  445666666665 75 79999999888887765    34322 1111111  0000112468888


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +..-.-.              .+..+.++|+++|++++..
T Consensus       221 id~~g~~--------------~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          221 VDPVGGR--------------TLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EECSTTT--------------THHHHHHTEEEEEEEEECS
T ss_pred             EECCcHH--------------HHHHHHHhhccCCEEEEEe
Confidence            8642211              1367888999999998864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.52  E-value=0.1  Score=44.30  Aligned_cols=98  Identities=17%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             ccCCCCeEEEEecCCC-HHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCC----ccCCCccE
Q 023703           96 KYLSSWSVLDIGTGNG-LLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT----KLERQFQL  168 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~----~~~~~fD~  168 (278)
                      ...++.+||-+|+|.+ .++..++. .+..+|+++|.++.-++.+++    .|... +.....|..+.    .....+|.
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~  235 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLGVQS  235 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSCEEE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCCceE
Confidence            4578899999999865 34444444 445699999999998877765    33222 22222222211    11234666


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++....-             ...+....+.|+++|.+++...
T Consensus       236 ~~~~~~~-------------~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          236 AIVCAVA-------------RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             EEECCSC-------------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEeccC-------------cchhheeheeecCCceEEEEec
Confidence            6643221             1223778889999999888643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.52  E-value=0.14  Score=43.95  Aligned_cols=93  Identities=17%  Similarity=0.155  Sum_probs=60.9

Q ss_pred             ccCCCCeEEEEe--cCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCc
Q 023703           96 KYLSSWSVLDIG--TGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiG--cG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~f  166 (278)
                      +..++.+||-+|  .|.|..+..+++. |+ +|++++.++..++.+++    .|...  ++..+-.+..      ....+
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~~--~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCDR--PINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCcE--EEecCChhHHHHHHHhcCCCC
Confidence            567889999999  3556666666665 76 89999999988887765    34321  2222111110      12468


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+++....-              ..++.+.++|+++|++++..
T Consensus       233 D~vid~~g~--------------~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          233 DVVYESVGG--------------AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             EEEEECSCT--------------HHHHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCCH--------------HHHHHHHHHHhcCCEEEEEe
Confidence            998864321              23477889999999988864

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=93.51  E-value=0.074  Score=45.51  Aligned_cols=96  Identities=17%  Similarity=0.179  Sum_probs=57.3

Q ss_pred             ccC-CCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-ccCCCccEEEe
Q 023703           96 KYL-SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KLERQFQLVMD  171 (278)
Q Consensus        96 ~~~-~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~  171 (278)
                      +.. ++.+||-+|+|. |..+..+++. |+ +|+++|.++...+.+++   ..|.+.+ +-..+.... ...+.+|+|+.
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~~v-i~~~~~~~~~~~~~g~D~vid  250 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLGADDY-VIGSDQAKMSELADSLDYVID  250 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSCCSCE-EETTCHHHHHHSTTTEEEEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcCCcee-eccccHHHHHHhcCCCCEEEE
Confidence            345 889999998742 3444555554 76 89999999887777653   2343221 111111000 01246899986


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .-.-...             ++.+.++|+|+|+++...
T Consensus       251 ~~g~~~~-------------~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          251 TVPVHHA-------------LEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             CCCSCCC-------------SHHHHTTEEEEEEEEECS
T ss_pred             CCCChHH-------------HHHHHHHhccCCEEEEeC
Confidence            4322111             156778999999998864

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.46  E-value=1.5  Score=36.22  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC------------hHHHHHHHHHhhhCCCcceEEEEccccCCcc
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s------------~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~  162 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.+            +..++.+.+.+...+ .++.++.+|+.+...
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-RRIIASQVDVRDFDA  103 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcC-CceEEEECCCCCHHH
Confidence            35678998898776   35566777786 89999987            666666655555555 368899999987531


Q ss_pred             -----------CCCccEEEeCCcc
Q 023703          163 -----------ERQFQLVMDKGTL  175 (278)
Q Consensus       163 -----------~~~fD~v~~~~~~  175 (278)
                                 .++.|+++.+...
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence                       1578999987654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=93.40  E-value=0.4  Score=39.16  Aligned_cols=75  Identities=20%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC------------hHHHHHHHHHhhhCCCcceEEEEccccCCcc-
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s------------~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-  162 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.+            +..++...+.+...+ .++.++.+|+.+... 
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-SRIVARQADVRDRESL   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHH
Confidence            5678898887666   45556677786 79999987            666666655555444 368999999987531 


Q ss_pred             ----------CCCccEEEeCCcc
Q 023703          163 ----------ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ----------~~~fD~v~~~~~~  175 (278)
                                .++.|+++.+..+
T Consensus        90 ~~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence                      1478999987654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=93.39  E-value=0.86  Score=37.01  Aligned_cols=111  Identities=17%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeC-ChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~-s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++. ++...+...+.+...+ .++.++.+|+.+...           
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG-SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35678888887766   35556677786 7888775 4555666666555555 368899999987531           


Q ss_pred             CCCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEec
Q 023703          163 ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .++.|+++.+....... +.....++.           ..+.+.+.+.|+++|.++..+.
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            14789999775542211 111111121           2345677778888888877654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=93.38  E-value=0.71  Score=38.12  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=68.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC--hHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s--~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.+  +...+...+.....+ .++.++.+|+.+...           
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECG-RKAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTT-CCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            5678898887665   34556667786 79999886  344555555555554 368889999987521           


Q ss_pred             CCCccEEEeCCcccee--ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAI--GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~--~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .++.|+++.+......  .+.....++.           ..+++.+...++++|.++..+
T Consensus       126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence            1578999987654211  0111111111           244567777888889888764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=93.34  E-value=0.98  Score=36.42  Aligned_cols=109  Identities=12%  Similarity=0.007  Sum_probs=68.6

Q ss_pred             CCCCeEEEEecC--CC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------
Q 023703           98 LSSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  162 (278)
Q Consensus        98 ~~~~~vLDiGcG--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------  162 (278)
                      .++++||-.|++  .|   .++..|++.|+ +|+.++.+....+.+++.....+  .+.++.+|+.+...          
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHH
Confidence            467899999975  44   34556666786 89999988766666655544443  47889999987531          


Q ss_pred             -CCCccEEEeCCcccee-----c-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 -ERQFQLVMDKGTLDAI-----G-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~-----~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       .++.|+++.+..+...     . .........           ..+++.+...++++|.++..+
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence             2578999987654321     0 010122222           234466677777788877764

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.30  E-value=0.78  Score=38.41  Aligned_cols=76  Identities=18%  Similarity=0.219  Sum_probs=56.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++||-.|++.|   .++..|++.|+ +|++++.++..++.+.+.+...+. .++.++.+|+.+...           .
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            4678999998877   35566777786 799999999888877776655442 268899999987531           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+..+
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            578999987654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.23  E-value=0.074  Score=45.31  Aligned_cols=94  Identities=22%  Similarity=0.305  Sum_probs=59.2

Q ss_pred             ccCCCCeEEEEecCCC--HHHHHHhh-C-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-----c-cC-C
Q 023703           96 KYLSSWSVLDIGTGNG--LLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----K-LE-R  164 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G--~~~~~l~~-~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~-~~-~  164 (278)
                      +..++.+||-.|+|+|  ..+..++. . |+ +|+++|.++...+.+++.    +... .+-..+ .+.     . .. +
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~~-~~~~~~-~~~~~~~~~~~~~~  239 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GADY-VINASM-QDPLAEIRRITESK  239 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCSE-EEETTT-SCHHHHHHHHTTTS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCCE-EecCCC-ccHHHHHHHHhcCC
Confidence            4568899999999744  44444444 4 65 899999999988887652    3221 111111 111     0 12 4


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+|+++.+..-             ...++.+.++|+|+|++++..
T Consensus       240 ~~d~vi~~~g~-------------~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          240 GVDAVIDLNNS-------------EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             CEEEEEESCCC-------------HHHHTTGGGGEEEEEEEEECC
T ss_pred             CceEEEECCCC-------------HHHHHHHHHHHhcCCEEEEEC
Confidence            78998865331             112367889999999998864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.09  E-value=0.12  Score=44.07  Aligned_cols=93  Identities=20%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC---Cc------cC
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD---TK------LE  163 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~---~~------~~  163 (278)
                      +..++.+||-+|+  |.|..+..++. .|+ +|+++|.++...+.+++    .+..  ..+  |..+   ..      ..
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~--~~~--d~~~~~~~~~~~~~~~~  236 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE--VFI--DFTKEKDIVGAVLKATD  236 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC--EEE--ETTTCSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc--eEE--ecCccHhHHHHHHHHhC
Confidence            4567899999998  34555555555 475 89999999888777664    3322  111  3321   10      11


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +.+|+++.+...             ...++.+.+.|+++|+++....
T Consensus       237 ~~~D~vi~~~g~-------------~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          237 GGAHGVINVSVS-------------EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             SCEEEEEECSSC-------------HHHHHHHTTSEEEEEEEEECCC
T ss_pred             CCCCEEEECCCc-------------HHHHHHHHHHHhcCCEEEEEeC
Confidence            268988875331             1234788899999999987654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.07  E-value=0.26  Score=41.52  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cC
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LE  163 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~  163 (278)
                      +..++.+||-.|+  |.|..+..++. .|+ +|+++|.++..++.+++.    +.. . .+  |..+..         ..
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~~-~-~~--d~~~~~~~~~i~~~~~~  212 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GCH-H-TI--NYSTQDFAEVVREITGG  212 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS-E-EE--ETTTSCHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC-E-EE--ECCCHHHHHHHHHHhCC
Confidence            4578899999995  45555555555 475 899999999888877652    322 1 12  222211         12


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..+|+++.+..-              ..++.+.++|+++|+++...
T Consensus       213 ~~~d~vi~~~g~--------------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK--------------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT--------------TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH--------------HHHHHHHHhhccCCEEEEEe
Confidence            468998865331              12367889999999988765

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.04  E-value=0.027  Score=48.03  Aligned_cols=91  Identities=20%  Similarity=0.323  Sum_probs=56.7

Q ss_pred             CCCeEEEEe-cC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcc--ccCC---ccCCCccEEE
Q 023703           99 SSWSVLDIG-TG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD--VLDT---KLERQFQLVM  170 (278)
Q Consensus        99 ~~~~vLDiG-cG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d--~~~~---~~~~~fD~v~  170 (278)
                      ++.+||-+| +| .|..+..+++. |+ +|++++.++..++.+++.    |.+.  ++..+  ..+.   ...+.+|+++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~~--vi~~~~~~~~~~~~~~~~g~Dvv~  222 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GADI--VLNHKESLLNQFKTQGIELVDYVF  222 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCSE--EECTTSCHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCcE--EEECCccHHHHHHHhCCCCccEEE
Confidence            788999885 33 34555556654 76 899999999988888763    3221  11111  1000   0124689988


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ....             ....++.+.++|+++|+++...
T Consensus       223 d~~g-------------~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          223 CTFN-------------TDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             ESSC-------------HHHHHHHHHHHEEEEEEEEESS
T ss_pred             ECCC-------------chHHHHHHHHHhccCCEEEEEC
Confidence            6322             1223377889999999997653

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.97  E-value=1.3  Score=36.16  Aligned_cols=76  Identities=14%  Similarity=0.207  Sum_probs=53.4

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeC-ChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~-s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|. ++..++...+.+...+ .++.++.+|+.+...           
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG-ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT-CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35678888887766   35556677786 8999995 7777766666665555 368899999988531           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+...
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence            1478999987654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.96  E-value=0.11  Score=48.65  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-----------CC--CcEEEEeCChHHHHHHHHH--------------hhhC-----C
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-----------GF--SDLTGVDYSEDAINLAQSL--------------ANRD-----G  146 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-----------~~--~~v~~~D~s~~~i~~a~~~--------------~~~~-----~  146 (278)
                      +..+|+|+|.|+|...+.+.+.           ..  -+++.+|..|-..+.+++.              ....     |
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4469999999999876655442           11  2689999954333333321              1111     1


Q ss_pred             C---------cceEEEEccccCCcc------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          147 F---------SCIKFLVDDVLDTKL------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       147 ~---------~~~~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +         -.+++..+|+.+...      ...+|.++.++.--    ......-...++..+.++++|||.+...++.
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p----~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~  213 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAP----AKNPDMWNEQLFNAMARMTRPGGTFSTFTAA  213 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC------CCTTCSHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCC----CCChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence            0         136677888865321      36789998755211    1111122356778999999999986654443

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.81  E-value=1.6  Score=35.54  Aligned_cols=110  Identities=13%  Similarity=0.145  Sum_probs=68.5

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC-hHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s-~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.. +...+...+.+...+ .++.++.+|+.+...           
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG-GRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35678998888766   35566777786 78888654 455555555555554 368889999987531           


Q ss_pred             CCCccEEEeCCcccee-ccCCCChhh-----------HHHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAI-GLHPDGPLK-----------RIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~-~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .++.|+++.+...... .+.....++           ...+++.+.+.|+++|.++..+
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            1478999987654211 111111111           1234566777788888887764

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=92.80  E-value=1.2  Score=36.51  Aligned_cols=75  Identities=16%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC----------------hHHHHHHHHHhhhCCCcceEEEEccccC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS----------------EDAINLAQSLANRDGFSCIKFLVDDVLD  159 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s----------------~~~i~~a~~~~~~~~~~~~~~~~~d~~~  159 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.+                +..++...+.+...+ .++.++.+|+.+
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~   87 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTAEVDVRD   87 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEEEcCCCC
Confidence            5678998988776   45666777786 89999987                566666655555444 368899999987


Q ss_pred             Ccc-----------CCCccEEEeCCcc
Q 023703          160 TKL-----------ERQFQLVMDKGTL  175 (278)
Q Consensus       160 ~~~-----------~~~fD~v~~~~~~  175 (278)
                      ...           .++.|+++.+..+
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            531           1478999987654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=92.77  E-value=0.17  Score=43.35  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             ccC-CCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccE
Q 023703           96 KYL-SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQL  168 (278)
Q Consensus        96 ~~~-~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~  168 (278)
                      ... ++.+||-+|+|. |..+..+++. |+ +|++++.++...+.+++.   .|...  ++  |..+..    ..+.+|+
T Consensus       183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~---lGa~~--v~--~~~~~~~~~~~~~~~D~  254 (366)
T 1yqd_A          183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKN---FGADS--FL--VSRDQEQMQAAAGTLDG  254 (366)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHT---SCCSE--EE--ETTCHHHHHHTTTCEEE
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh---cCCce--EE--eccCHHHHHHhhCCCCE
Confidence            345 788999998743 3444455544 65 899999999877776532   34321  12  111110    1246899


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |+..-.....             ++.+.++|+++|+++....
T Consensus       255 vid~~g~~~~-------------~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          255 IIDTVSAVHP-------------LLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             EEECCSSCCC-------------SHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCcHHH-------------HHHHHHHHhcCCEEEEEcc
Confidence            9865332111             1567788999999887643

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=92.72  E-value=0.084  Score=43.22  Aligned_cols=72  Identities=14%  Similarity=0.126  Sum_probs=44.0

Q ss_pred             EEE-EccccCCccCCCccEEEeCCccceeccC-C---CChhhHHHHHHHHHhcccCCcEEEEEecCCC---hHHHHHHHh
Q 023703          151 KFL-VDDVLDTKLERQFQLVMDKGTLDAIGLH-P---DGPLKRIMYWDSVSKLVAPGGLLVITSCNST---KDELVHEVS  222 (278)
Q Consensus       151 ~~~-~~d~~~~~~~~~fD~v~~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~  222 (278)
                      .++ .+|+......+++|+|+++..-..-..+ .   +-......++..+.++|+|||.+++......   .+.+...+.
T Consensus       191 t~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~La  270 (320)
T 2hwk_A          191 TFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIA  270 (320)
T ss_dssp             SEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHH
T ss_pred             eeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHH
Confidence            344 6677665545789999997654322211 0   0011122356778899999999999987766   344444443

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=92.45  E-value=0.039  Score=46.04  Aligned_cols=91  Identities=15%  Similarity=0.093  Sum_probs=57.8

Q ss_pred             cCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc-cCCc-cCCCccEEEe
Q 023703           97 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDTK-LERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~  171 (278)
                      ..++.+||-+|+  |.|..+..+++. |+ +|+++|.++...+.+++    .|...  ++..+- .+.. .-+.+|+++.
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~~--~~~~~~~~~~~~~~~~~d~vid  195 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEE--AATYAEVPERAKAWGGLDLVLE  195 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSE--EEEGGGHHHHHHHTTSEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCCE--EEECCcchhHHHHhcCceEEEE
Confidence            568899999997  445666666654 75 89999999988887754    34322  121110 0100 0156898886


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       ..-.              .++.+.++|+++|+++...
T Consensus       196 -~g~~--------------~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          196 -VRGK--------------EVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             -CSCT--------------THHHHHTTEEEEEEEEEC-
T ss_pred             -CCHH--------------HHHHHHHhhccCCEEEEEe
Confidence             3211              1267889999999988754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.40  E-value=1.2  Score=33.74  Aligned_cols=95  Identities=17%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             CCCeEEEEecCCC--HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----c--CCCccEE
Q 023703           99 SSWSVLDIGTGNG--LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L--ERQFQLV  169 (278)
Q Consensus        99 ~~~~vLDiGcG~G--~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~--~~~fD~v  169 (278)
                      .+.+|+-+|||.=  .++..|... |. +|+++|.++..++.+++    .   .+.++.+|..+..    .  -..+|+|
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~---g~~~~~gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----E---GRNVISGDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----T---TCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----C---CCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence            3558998887532  122334445 65 79999999988776653    2   3456677765421    1  2457877


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +..-.         +......+ -...+.+.|++.++....+
T Consensus       110 i~~~~---------~~~~~~~~-~~~~~~~~~~~~ii~~~~~  141 (183)
T 3c85_A          110 LLAMP---------HHQGNQTA-LEQLQRRNYKGQIAAIAEY  141 (183)
T ss_dssp             EECCS---------SHHHHHHH-HHHHHHTTCCSEEEEEESS
T ss_pred             EEeCC---------ChHHHHHH-HHHHHHHCCCCEEEEEECC
Confidence            75321         11122222 3345556777787776544

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=92.38  E-value=0.03  Score=47.76  Aligned_cols=91  Identities=18%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCC
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~  164 (278)
                      .+..++.+||-+|+  |.|..+..+++. |+ +|+++ .++..++.+++.    |...   +. +-.+..       ...
T Consensus       146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l----Ga~~---i~-~~~~~~~~~~~~~~~~  215 (343)
T 3gaz_A          146 AQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL----GATP---ID-ASREPEDYAAEHTAGQ  215 (343)
T ss_dssp             TCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH----TSEE---EE-TTSCHHHHHHHHHTTS
T ss_pred             cCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc----CCCE---ec-cCCCHHHHHHHHhcCC
Confidence            34578899999995  345666666665 65 89999 888888877653    3221   22 211111       124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+|+++....-              ..+..+.++|+++|.++...
T Consensus       216 g~D~vid~~g~--------------~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          216 GFDLVYDTLGG--------------PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             CEEEEEESSCT--------------HHHHHHHHHEEEEEEEEESC
T ss_pred             CceEEEECCCc--------------HHHHHHHHHHhcCCeEEEEc
Confidence            69998864221              13367888999999998764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=92.37  E-value=0.27  Score=43.53  Aligned_cols=95  Identities=14%  Similarity=0.161  Sum_probs=60.0

Q ss_pred             ccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEcccc-------------
Q 023703           96 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVL-------------  158 (278)
Q Consensus        96 ~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~-------------  158 (278)
                      +..++.+||-+|+  |.|..+..+++. |+ ++++++.++.-++.+++.    |... +.....|..             
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~d~~~~~~~~~~~~~~~  299 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAM----GAEAIIDRNAEGYRFWKDENTQDPKEW  299 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCCEEEETTTTTCCSEEETTEECHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhh----CCcEEEecCcCcccccccccccchHHH
Confidence            4578899999997  345666666665 65 899999999988888653    3221 111111110             


Q ss_pred             ----C-C---ccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          159 ----D-T---KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       159 ----~-~---~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                          + .   .....+|+|+....            .  ..+..+.++|+++|++++..
T Consensus       300 ~~~~~~i~~~t~g~g~Dvvid~~G------------~--~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          300 KRFGKRIRELTGGEDIDIVFEHPG------------R--ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHTSCCEEEEEECSC------------H--HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHhCCCCCcEEEEcCC------------c--hhHHHHHHHhhCCcEEEEEe
Confidence                0 0   01247898886322            1  23477888999999998864

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=92.34  E-value=0.27  Score=49.20  Aligned_cols=76  Identities=12%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-----------------C
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----------------T  160 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-----------------~  160 (278)
                      +..+++|+.||.|.++..+...|+ ..+.++|+++.+++.-+.|+     ++..++..|+.+                 .
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            345899999999999999999886 56889999999999888775     234455555431                 1


Q ss_pred             ccCCCccEEEeCCccceec
Q 023703          161 KLERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       161 ~~~~~fD~v~~~~~~~~~~  179 (278)
                      +..+.+|+++...+-..+.
T Consensus       925 p~~~~vDvl~GGpPCQ~FS  943 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGFS  943 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTTC
T ss_pred             cccCccceEEecCCCcccc
Confidence            1124689999876655443

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.26  E-value=0.044  Score=46.30  Aligned_cols=93  Identities=22%  Similarity=0.260  Sum_probs=57.8

Q ss_pred             cCCCC-eEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc-cC---CccCCCccE
Q 023703           97 YLSSW-SVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LD---TKLERQFQL  168 (278)
Q Consensus        97 ~~~~~-~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~-~~---~~~~~~fD~  168 (278)
                      ..++. +||-+|+  |.|..+..+++. |+ +|++++.++..++.+++.    |...+ +-..+. .+   ....+.+|+
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga~~v-~~~~~~~~~~~~~~~~~~~d~  220 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASEV-ISREDVYDGTLKALSKQQWQG  220 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSEE-EEHHHHCSSCCCSSCCCCEEE
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCcEE-EECCCchHHHHHHhhcCCccE
Confidence            45564 8999997  445566666665 75 799999998888877652    32221 111111 11   111346888


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++..-.            .  ..+..+.++|+++|++++..
T Consensus       221 vid~~g------------~--~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          221 AVDPVG------------G--KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EEESCC------------T--HHHHHHHTTEEEEEEEEECC
T ss_pred             EEECCc------------H--HHHHHHHHhhcCCCEEEEEe
Confidence            886422            1  12477889999999998864

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=92.22  E-value=0.21  Score=42.56  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             cccCCC--CeEEEEec--CCCHHHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc--------
Q 023703           95 DKYLSS--WSVLDIGT--GNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------  161 (278)
Q Consensus        95 ~~~~~~--~~vLDiGc--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~--------  161 (278)
                      .+..++  .+||-.|+  |.|..+..++. .|+.+|+++|.++..++.+++.   .|..  ..+  |..+..        
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~~~--d~~~~~~~~~~~~~  226 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD--AAI--NYKKDNVAEQLRES  226 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS--EEE--ETTTSCHHHHHHHH
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc--eEE--ecCchHHHHHHHHh
Confidence            345678  89999998  33444555554 3654899999998877777642   2322  111  222211        


Q ss_pred             cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..+.+|+++.+..-              ..++.+.++|+++|++++..
T Consensus       227 ~~~~~d~vi~~~G~--------------~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          227 CPAGVDVYFDNVGG--------------NISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             CTTCEEEEEESCCH--------------HHHHHHHHTEEEEEEEEECC
T ss_pred             cCCCCCEEEECCCH--------------HHHHHHHHHhccCcEEEEEC
Confidence            12368888864321              23477889999999998764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.13  E-value=0.12  Score=43.64  Aligned_cols=64  Identities=17%  Similarity=0.157  Sum_probs=44.4

Q ss_pred             ceEEEEccccCC-c--cCCCccEEEeCCccceecc-CCCC------hhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          149 CIKFLVDDVLDT-K--LERQFQLVMDKGTLDAIGL-HPDG------PLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       149 ~~~~~~~d~~~~-~--~~~~fD~v~~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ...++++|..+. .  .+++||+|+++++|....- ....      .......+.++.++|+|||.+++.....
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            478889998753 2  3578999999999853310 0111      1134567788999999999999986543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.08  E-value=1.4  Score=35.86  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++...+...+.+...+ .++.++.+|+.+...           .+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAG-LEGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            5667887776655   34556667786 89999999988887777666555 357888999987521           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus       105 ~iD~lvnnAg~  115 (270)
T 3ftp_A          105 ALNVLVNNAGI  115 (270)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.08  E-value=2.3  Score=31.03  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=58.2

Q ss_pred             CeEEEEecCCCHHHHHHhh----CCCCcEEEEeCC-hHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEE
Q 023703          101 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s-~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      .+|+=+|+  |..+..+++    .|. +|+.+|.+ +..++.......    ..+.++.+|..+...     -...|+|+
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            46887775  666665544    465 79999997 454544443321    247888999876421     24678877


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      ..-.-+          .....+....+.+.|...++....+....+
T Consensus        77 ~~~~~d----------~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~  112 (153)
T 1id1_A           77 ALSDND----------ADNAFVVLSAKDMSSDVKTVLAVSDSKNLN  112 (153)
T ss_dssp             ECSSCH----------HHHHHHHHHHHHHTSSSCEEEECSSGGGHH
T ss_pred             EecCCh----------HHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            632211          222333555666677777777655544433

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=92.07  E-value=0.59  Score=37.91  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=58.6

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++.+|--|.+.|   ..+..+++.|+ +|+.+|.++..++.+.+.++..+ .++.++.+|+.+...           -+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKKKDVEEFVRRTFETYS   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            6778888888777   35667777886 89999999999988888887776 368899999987531           26


Q ss_pred             CccEEEeCCc
Q 023703          165 QFQLVMDKGT  174 (278)
Q Consensus       165 ~fD~v~~~~~  174 (278)
                      +.|+++.|.-
T Consensus        84 ~iDiLVNNAG   93 (254)
T 4fn4_A           84 RIDVLCNNAG   93 (254)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            8999998764

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.07  E-value=0.37  Score=41.07  Aligned_cols=95  Identities=19%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-------ccCC
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-------~~~~  164 (278)
                      .+..++.+||-.|+  |.|..+..++.. |+ +|+++|.++..++.+++.    +.. . .+..+-.+.       ....
T Consensus       158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~-~-~~~~~~~~~~~~~~~~~~~~  230 (354)
T 2j8z_A          158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA-A-GFNYKKEDFSEATLKFTKGA  230 (354)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS-E-EEETTTSCHHHHHHHHTTTS
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc-E-EEecCChHHHHHHHHHhcCC
Confidence            34577889999985  344555555544 75 899999999988887542    322 1 121111111       0124


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .+|+++.+..-.              .+..+.++|+++|++++...
T Consensus       231 ~~d~vi~~~G~~--------------~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          231 GVNLILDCIGGS--------------YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             CEEEEEESSCGG--------------GHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEEECCCch--------------HHHHHHHhccCCCEEEEEec
Confidence            689988754321              12667889999999988653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.07  E-value=2.3  Score=30.11  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=53.1

Q ss_pred             CeEEEEecCCCHHHHHH----hhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----c-CCCccEEEe
Q 023703          101 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVMD  171 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l----~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~-~~~fD~v~~  171 (278)
                      .+|+=+|+  |..+..+    .+.|. +|+.+|.++..++.+++.   .   ++.++.+|..+..    . -..+|+|+.
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~---~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHh---c---CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            47888877  5555444    44464 799999999877665532   1   3456677765431    1 246788876


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      .-..+          .....+..+.+.+.++ .+++...+...
T Consensus        76 ~~~~~----------~~~~~~~~~~~~~~~~-~ii~~~~~~~~  107 (140)
T 1lss_A           76 VTGKE----------EVNLMSSLLAKSYGIN-KTIARISEIEY  107 (140)
T ss_dssp             CCSCH----------HHHHHHHHHHHHTTCC-CEEEECSSTTH
T ss_pred             eeCCc----------hHHHHHHHHHHHcCCC-EEEEEecCHhH
Confidence            43211          1122334455557775 45554444433

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.06  E-value=0.6  Score=34.44  Aligned_cols=97  Identities=14%  Similarity=0.054  Sum_probs=53.1

Q ss_pred             CCCCeEEEEecCCCHHHHH----HhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----c-CCCccE
Q 023703           98 LSSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQL  168 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~----l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~-~~~fD~  168 (278)
                      .++.+|+-+|||  .++..    |...|. +|+++|.++..++.++.   ..   ...++.+|..+..    . -..+|+
T Consensus        17 ~~~~~v~IiG~G--~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~---g~~~~~~d~~~~~~l~~~~~~~ad~   87 (155)
T 2g1u_A           17 QKSKYIVIFGCG--RLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EF---SGFTVVGDAAEFETLKECGMEKADM   87 (155)
T ss_dssp             CCCCEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TC---CSEEEESCTTSHHHHHTTTGGGCSE
T ss_pred             cCCCcEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cC---CCcEEEecCCCHHHHHHcCcccCCE
Confidence            456799999875  44443    344465 89999999876554321   12   3455667754421    0 235788


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      |+..-.-         . .....+..+.+.+.|...++....+..
T Consensus        88 Vi~~~~~---------~-~~~~~~~~~~~~~~~~~~iv~~~~~~~  122 (155)
T 2g1u_A           88 VFAFTND---------D-STNFFISMNARYMFNVENVIARVYDPE  122 (155)
T ss_dssp             EEECSSC---------H-HHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred             EEEEeCC---------c-HHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence            7763221         1 222222344455556666666554443

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=91.81  E-value=2  Score=35.82  Aligned_cols=75  Identities=16%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC------------hHHHHHHHHHhhhCCCcceEEEEccccCCcc-
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s------------~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-  162 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.+            +..++...+.+...+ .++.++.+|+.+... 
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG-RRIIARQADVRDLASL  122 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHH
Confidence            5678888887766   35556677786 89999886            566665555555554 368899999987531 


Q ss_pred             ----------CCCccEEEeCCcc
Q 023703          163 ----------ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ----------~~~fD~v~~~~~~  175 (278)
                                .++.|+++.+..+
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence                      1478999987654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.81  E-value=1.1  Score=35.01  Aligned_cols=99  Identities=9%  Similarity=0.008  Sum_probs=59.4

Q ss_pred             eEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeC
Q 023703          102 SVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  172 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~  172 (278)
                      +|+=+|+  |.++..++.    .|. +|+.+|.++..++...+.   .   ++.++.+|..+...     -...|+++..
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~---~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKK---L---KATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHH---S---SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH---c---CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            4666665  556655544    465 899999999988765442   1   46788999887431     2467888763


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      -.-+          .....+....+.+.|...++....+....+.+.
T Consensus        73 ~~~d----------~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~  109 (218)
T 3l4b_C           73 TPRD----------EVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFK  109 (218)
T ss_dssp             CSCH----------HHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHH
T ss_pred             cCCc----------HHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHH
Confidence            2211          222233455555667777766555554444443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.80  E-value=0.59  Score=40.86  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=60.0

Q ss_pred             CCeEEEEecCCCHHHHHHh----hCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEE
Q 023703          100 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~----~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      ..+|+-+|+|  .++..++    ..|. .|+++|.++..++.+++    .   .+.++.+|..+...     -...|+|+
T Consensus         4 ~~~viIiG~G--r~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~----~---g~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFG--RFGQITGRLLLSSGV-KMVVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHH----T---TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCC--HHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHh----C---CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            3478888874  4555544    3465 79999999999988874    2   45678999987531     25678777


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ..-.         +. .....+....+.+.|+..++....+..
T Consensus        74 v~~~---------~~-~~n~~i~~~ar~~~p~~~Iiara~~~~  106 (413)
T 3l9w_A           74 NAID---------DP-QTNLQLTEMVKEHFPHLQIIARARDVD  106 (413)
T ss_dssp             ECCS---------SH-HHHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred             ECCC---------Ch-HHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            5321         11 222233555666788877777654443

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=91.55  E-value=2.3  Score=34.61  Aligned_cols=72  Identities=18%  Similarity=0.211  Sum_probs=52.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.++...+.+.+.+   + .++.++.+|+.+...           .+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---G-CGAAACRVDVSDEQQIIAMVDACVAAFG  102 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---C-SSCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---C-CcceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5678888888776   45666777786 8999999988777665544   2 357889999987531           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus       103 ~iD~lvnnAg~  113 (277)
T 3gvc_A          103 GVDKLVANAGV  113 (277)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=91.51  E-value=1.2  Score=36.48  Aligned_cols=73  Identities=14%  Similarity=0.198  Sum_probs=50.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++||-.|++.|   .++..+++.|+ +|++++.++..++...+.+...+..++.++.+|+.+...           .+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4668888886554   23445566676 899999998887766655544443368889999987421           14


Q ss_pred             CccEEEeC
Q 023703          165 QFQLVMDK  172 (278)
Q Consensus       165 ~fD~v~~~  172 (278)
                      ..|+++.+
T Consensus       106 ~iD~li~n  113 (286)
T 1xu9_A          106 GLDMLILN  113 (286)
T ss_dssp             SCSEEEEC
T ss_pred             CCCEEEEC
Confidence            78999977

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=91.46  E-value=0.44  Score=40.75  Aligned_cols=88  Identities=19%  Similarity=0.275  Sum_probs=54.7

Q ss_pred             CCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCCh---HHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEE
Q 023703          100 SWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSE---DAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLV  169 (278)
Q Consensus       100 ~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~---~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v  169 (278)
                      +.+||-+|+|. |..+..+++. |+ +|+++|.++   ...+.+++    .|...+   ..+  +..     ..+.+|++
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga~~v---~~~--~~~~~~~~~~~~~d~v  250 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKTNYY---NSS--NGYDKLKDSVGKFDVI  250 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTCEEE---ECT--TCSHHHHHHHCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCCcee---chH--HHHHHHHHhCCCCCEE
Confidence            89999999832 3444445544 76 899999998   77777664    232222   111  111     01468998


Q ss_pred             EeCCccceeccCCCChhhHHHHH-HHHHhcccCCcEEEEEec
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYW-DSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~  210 (278)
                      +......             ..+ +.+.++|+++|++++...
T Consensus       251 id~~g~~-------------~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          251 IDATGAD-------------VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             EECCCCC-------------THHHHHHGGGEEEEEEEEECSC
T ss_pred             EECCCCh-------------HHHHHHHHHHHhcCCEEEEEec
Confidence            8643211             123 677889999999988653

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=91.20  E-value=1.2  Score=35.94  Aligned_cols=109  Identities=9%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC---hHHHHHHHHHhhhCCCcceEEEEccccCCcc----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS---EDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s---~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------  162 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.+   ...++...+.+...+ .++.++.+|+.+...          
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQG-AKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTT-CEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            5678888887766   34556666776 78888764   344555555454444 368899999987531          


Q ss_pred             -CCCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 -ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                       .++.|+++.+....... +.....+..           ..+++.+...|+++|.++..+
T Consensus        88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is  147 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA  147 (262)
T ss_dssp             HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence             15789999876532111 111111111           234466667777788887764

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.04  E-value=1.2  Score=36.24  Aligned_cols=109  Identities=13%  Similarity=0.132  Sum_probs=66.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEE-eCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~-D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+ ..++...+...+.+...+ .++.++.+|+.+...           .
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG-GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4678888887766   34556666786 67776 455666666666555554 368889999987531           1


Q ss_pred             CCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.|+++.+..+.... +.....+..           ..+++.+.+.++++|.++..+
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            4789999876542111 111111111           234466777777888887764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.01  E-value=4.7  Score=32.59  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=51.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++||-.|++.|   .++..|++.|+ +|++++.++..++...+.+...+. .++.++.+|+.+...           .
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            4568888886554   33445556676 899999998877766665555443 247888999987531           1


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      +++|+++.+...
T Consensus       110 g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 SGVDICINNAGL  121 (279)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999977653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=90.94  E-value=1.8  Score=35.47  Aligned_cols=75  Identities=15%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChH-------HHHHHHHHhhhCCCcceEEEEccccCCcc------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED-------AINLAQSLANRDGFSCIKFLVDDVLDTKL------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~-------~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------  162 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++.       .++.+.+.+...+ .++.++.+|+.+...      
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~   85 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAG-GQALPIVGDIRDGDAVAAAVA   85 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHT-SEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHH
Confidence            5678898888776   45566677786 8999998875       3444444444444 368899999987531      


Q ss_pred             -----CCCccEEEeCCcc
Q 023703          163 -----ERQFQLVMDKGTL  175 (278)
Q Consensus       163 -----~~~fD~v~~~~~~  175 (278)
                           .++.|+++.+...
T Consensus        86 ~~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHHcCCCCEEEECCCC
Confidence                 1478999987654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.76  E-value=1.4  Score=35.61  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...           .
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG-RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35778999998877   45667777886 79999999988888777776655 368899999987531           2


Q ss_pred             CCccEEEeCCc
Q 023703          164 RQFQLVMDKGT  174 (278)
Q Consensus       164 ~~fD~v~~~~~  174 (278)
                      ++.|+++.+..
T Consensus        87 g~id~lv~nAg   97 (264)
T 3ucx_A           87 GRVDVVINNAF   97 (264)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            57899998763

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=90.69  E-value=0.19  Score=43.23  Aligned_cols=91  Identities=15%  Similarity=0.118  Sum_probs=57.1

Q ss_pred             CCCCeEEEEecC--CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCccE
Q 023703           98 LSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQL  168 (278)
Q Consensus        98 ~~~~~vLDiGcG--~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD~  168 (278)
                      .++.+||-+|++  .|..+..+++. |+ +|+++. ++.-.+.+++    .|..  .++...-.+..      .++.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE--EVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS--EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc--EEEECCCchHHHHHHHHccCCccE
Confidence            678899999983  56777777776 65 788885 8877777664    4432  22222111110      1345999


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcc-cCCcEEEEEe
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITS  209 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~  209 (278)
                      ++..-.-             ...+..+.+.| +++|+++...
T Consensus       235 v~d~~g~-------------~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCITN-------------VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESSCS-------------HHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECCCc-------------hHHHHHHHHHhhcCCCEEEEEe
Confidence            9863221             11236677788 6999998764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.65  E-value=1.2  Score=35.53  Aligned_cols=75  Identities=15%  Similarity=0.220  Sum_probs=54.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++...+...+.+...+ .++.++.+|+.+...           .+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG-FKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4567888886655   34556666786 89999999988888777776665 368899999987521           24


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987644

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.53  E-value=3.4  Score=33.42  Aligned_cols=63  Identities=17%  Similarity=0.217  Sum_probs=46.0

Q ss_pred             CeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703          101 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ++||=.||  |.++..+++    .|+ +|++++.++...+....       .+++++.+|+.+.. -..+|+|+....
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-~~~~d~vi~~a~   72 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-LDGVTHLLISTA   72 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-CTTCCEEEECCC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-------CCCeEEEecccccc-cCCCCEEEECCC
Confidence            48999994  877776655    465 89999999876554432       35889999998865 566888886543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=90.51  E-value=2.6  Score=33.77  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=51.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.++...+...+.+   + .++.++.+|+.+...           .+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   81 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---G-PAAYAVQMDVTRQDSIDAAIAATVEHAG   81 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            5678888887655   34556667786 8999999988776665544   2 357889999987531           24


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        82 ~id~lv~~Ag~   92 (259)
T 4e6p_A           82 GLDILVNNAAL   92 (259)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78999987654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=90.43  E-value=1.2  Score=36.19  Aligned_cols=75  Identities=15%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc------------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------------~  163 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...            .
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678888887655   34555666786 89999999887776665555444 368889999987521            1


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        98 g~id~lv~nAg~  109 (273)
T 1ae1_A           98 GKLNILVNNAGV  109 (273)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            678999987654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=90.30  E-value=1.1  Score=36.20  Aligned_cols=76  Identities=20%  Similarity=0.267  Sum_probs=56.8

Q ss_pred             CCCeEEEEec-CCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGT-GNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGc-G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++||-.|+ |.|   .++..+++.|+ +|+.++.++..++.+.+.+...+-.++.++.+|+.+...           .
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            5678998887 565   45667777886 799999999888877777655543468999999987531           1


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+..+
T Consensus       100 g~id~li~~Ag~  111 (266)
T 3o38_A          100 GRLDVLVNNAGL  111 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            478999987654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=90.30  E-value=1.3  Score=35.67  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=52.5

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C-
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E-  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~-  163 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           . 
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4668888887655   34455666676 89999999887776655555444 368889999987521           1 


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        86 g~id~lv~~Ag~   97 (260)
T 2ae2_A           86 GKLNILVNNAGI   97 (260)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            678999987653

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=90.27  E-value=0.88  Score=36.57  Aligned_cols=75  Identities=12%  Similarity=0.108  Sum_probs=56.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------CCC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ  165 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~~  165 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...          .++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG-GRIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            4678888888776   45566677786 89999999988887777776655 368999999987531          157


Q ss_pred             ccEEEeCCcc
Q 023703          166 FQLVMDKGTL  175 (278)
Q Consensus       166 fD~v~~~~~~  175 (278)
                      .|+++.+...
T Consensus        84 id~lv~nAg~   93 (252)
T 3h7a_A           84 LEVTIFNVGA   93 (252)
T ss_dssp             EEEEEECCCC
T ss_pred             ceEEEECCCc
Confidence            8999987654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=90.25  E-value=2.8  Score=34.14  Aligned_cols=109  Identities=16%  Similarity=0.176  Sum_probs=63.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChH-HHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSED-AINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~-~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++. ..+.+.+.+...+ .++.++.+|+.+...           -
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG-SDAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4667887777655   34445566676 7999998764 3444444444444 368888999887421           1


Q ss_pred             CCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ++.|+++.+....... +.....++.           ..+++.+.+.|+.+|.++..+
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4789999876542110 001111111           234456666777778877764

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=90.19  E-value=3.8  Score=36.25  Aligned_cols=102  Identities=16%  Similarity=0.208  Sum_probs=61.0

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-------CC------Cc--ceEEEEccccCCccC
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG------FS--CIKFLVDDVLDTKLE  163 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-------~~------~~--~~~~~~~d~~~~~~~  163 (278)
                      .+|.-||+|.=  .++..++..|+ +|+.+|.++..++.+++....       .+      ..  ...+ ..|..   .-
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~---~~  112 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK---EL  112 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG---GG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH---HH
Confidence            47999999872  45566677776 899999999988887653321       00      00  1222 33431   12


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      ...|+|+..-+        ....-...+++++...++|+.+++..+......
T Consensus       113 ~~aDlVIeaVp--------e~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~  156 (463)
T 1zcj_A          113 STVDLVVEAVF--------EDMNLKKKVFAELSALCKPGAFLCTNTSALNVD  156 (463)
T ss_dssp             TTCSEEEECCC--------SCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH
T ss_pred             CCCCEEEEcCC--------CCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHH
Confidence            45688886322        222233556678888899988766544444333

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.10  E-value=0.29  Score=45.67  Aligned_cols=109  Identities=15%  Similarity=0.237  Sum_probs=63.4

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-----------CC--CcEEEEeC---ChHHHHHHHH-----------HhhhCC-----
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-----------GF--SDLTGVDY---SEDAINLAQS-----------LANRDG-----  146 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-----------~~--~~v~~~D~---s~~~i~~a~~-----------~~~~~~-----  146 (278)
                      +.-+|||+|-|+|...+...+.           ..  -+++++|.   ++..+..+-.           ......     
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            3458999999999766554331           11  15899998   6666653322           111110     


Q ss_pred             C---------cceEEEEccccCCcc------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          147 F---------SCIKFLVDDVLDTKL------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       147 ~---------~~~~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +         -.+++..+|+.+...      ...||+++.++.--    ......-...++..+.++++|||.+...+..
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p----~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~  221 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP----AKNPDMWTQNLFNAMARLARPGGTLATFTSA  221 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG----GGCGGGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCC----cCChhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence            0         124566677765321      35789888754211    1111112356779999999999987654443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=90.10  E-value=2.7  Score=34.05  Aligned_cols=108  Identities=14%  Similarity=0.071  Sum_probs=61.3

Q ss_pred             CCCeEEEEecC--CC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .+++||-.|++  .|   .++..|++.|+ +|+.++.++..-+.+++.....+  ++.++.+|+.+...           
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46689999976  34   34445566675 89999988752222222222222  36788899987421           


Q ss_pred             CCCccEEEeCCcccee-----ccCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 ERQFQLVMDKGTLDAI-----GLHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~-----~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .++.|+++.+......     .+........           ..+++.+...|+++|.++..+
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  144 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS  144 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence            2478999987654221     0111111111           233455666666678877664

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=89.92  E-value=2.5  Score=35.72  Aligned_cols=106  Identities=10%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCC--CCcEEEEeCChHHHHHHHHHhhhC-----------------------CCcceEEE
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRD-----------------------GFSCIKFL  153 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~~D~s~~~i~~a~~~~~~~-----------------------~~~~~~~~  153 (278)
                      +...|+.+|||.=.....+...+  ...++=+|. |..++.=++.+...                       .-++..++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            45689999999998888887652  236777776 44444333333321                       01357889


Q ss_pred             EccccCCc----------c-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          154 VDDVLDTK----------L-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       154 ~~d~~~~~----------~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .+|+.+..          . ....-++++-+++..+.     +.....+++.+.+...+ |.+++.+.-
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~-----~~~~~~ll~~ia~~f~~-~~~i~yE~i  231 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMT-----PEQSANLLKWAANSFER-AMFINYEQV  231 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-----HHHHHHHHHHHHHHCSS-EEEEEEEEC
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCC-----HHHHHHHHHHHHHhCCC-ceEEEEecc
Confidence            99997731          1 12233666666665543     56777888888877654 555444433

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.84  E-value=1.2  Score=35.47  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=55.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...           .+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5678898887665   35556667786 79999999998888777776655 368899999987531           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78999987644

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=89.78  E-value=4.3  Score=33.00  Aligned_cols=72  Identities=19%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.++..++...+..   + .++.++.+|+.+...           .+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---G-SKAFGVRVDVSSAKDAESMVEKTTAKWG  100 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5678888887766   35556667786 8999999988776655442   2 358889999987521           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus       101 ~iD~lv~nAg~  111 (277)
T 4dqx_A          101 RVDVLVNNAGF  111 (277)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78999987654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=89.73  E-value=0.15  Score=41.50  Aligned_cols=61  Identities=16%  Similarity=0.062  Sum_probs=39.8

Q ss_pred             eEEEEccccCCc---cCCCccEEEeCCccceeccCCC---Ch----hhHHHHHHHHHhcccCCcEEEEEec
Q 023703          150 IKFLVDDVLDTK---LERQFQLVMDKGTLDAIGLHPD---GP----LKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       150 ~~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~~~~~---~~----~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..++++|..+..   .+++||+|+.+++|..-.....   ..    ......++++.++|+|||.+++...
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~   75 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT   75 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence            356778875531   2468999999999853211000   11    1234566888999999999988853

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.45  E-value=1.6  Score=29.91  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=43.8

Q ss_pred             CCeEEEEecCCCHHHHH----HhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEEe
Q 023703          100 SWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD  171 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~----l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~  171 (278)
                      +.+|+-+|+  |..+..    +...|..+|+++|.++..++.+.    .   ..+.+...|+.+..    .-..+|+|+.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---MGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---CCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            458999998  555444    44456348999999998776654    1   24667788877632    1246898887


Q ss_pred             CCc
Q 023703          172 KGT  174 (278)
Q Consensus       172 ~~~  174 (278)
                      ..+
T Consensus        76 ~~~   78 (118)
T 3ic5_A           76 AAP   78 (118)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            544

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=89.39  E-value=0.68  Score=38.72  Aligned_cols=94  Identities=17%  Similarity=0.067  Sum_probs=56.6

Q ss_pred             cccCCCCeEEEEe-c-CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-Cc-cCCCccEE
Q 023703           95 DKYLSSWSVLDIG-T-GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK-LERQFQLV  169 (278)
Q Consensus        95 ~~~~~~~~vLDiG-c-G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v  169 (278)
                      .+..++.+||-+| + |.|..+..+++. |+ +|++++ ++...+.+++    .|.+.  ++..+-.+ .. .-..+|++
T Consensus       148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~~g~D~v  219 (321)
T 3tqh_A          148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKA----LGAEQ--CINYHEEDFLLAISTPVDAV  219 (321)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHH----HTCSE--EEETTTSCHHHHCCSCEEEE
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHH----cCCCE--EEeCCCcchhhhhccCCCEE
Confidence            3567889999886 4 345666666665 75 899987 5554666654    34332  22221111 11 11468988


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +..-.            . .. +..+.++|+++|+++....
T Consensus       220 ~d~~g------------~-~~-~~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          220 IDLVG------------G-DV-GIQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             EESSC------------H-HH-HHHHGGGEEEEEEEEECCS
T ss_pred             EECCC------------c-HH-HHHHHHhccCCCEEEEeCC
Confidence            86322            1 11 2678899999999987643

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=89.33  E-value=0.52  Score=41.49  Aligned_cols=96  Identities=19%  Similarity=0.127  Sum_probs=60.0

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCC----------
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT----------  160 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~----------  160 (278)
                      .+..++.+||-.|+  |.|..+..+++. |+ ++++++.++..++.+++    .|... +.....|..+.          
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence            45678899999997  334556666665 65 89999999998888764    34322 11111121100          


Q ss_pred             -----------ccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          161 -----------KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       161 -----------~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                                 .....+|+++....-              ..++.+.++|+++|.+++..
T Consensus       291 ~~~~~~~~v~~~~g~g~Dvvid~~G~--------------~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          291 TGRKLAKLVVEKAGREPDIVFEHTGR--------------VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHSSCCSEEEECSCH--------------HHHHHHHHHSCTTCEEEESC
T ss_pred             hhhHHHHHHHHHhCCCceEEEECCCc--------------hHHHHHHHHHhcCCEEEEEe
Confidence                       013468998864321              13367888999999998865

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=89.00  E-value=0.24  Score=42.30  Aligned_cols=95  Identities=12%  Similarity=0.054  Sum_probs=53.5

Q ss_pred             ccCCC-CeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHH----HHHHHHHhhhCCCcce-EEEE---ccccCCc--
Q 023703           96 KYLSS-WSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDA----INLAQSLANRDGFSCI-KFLV---DDVLDTK--  161 (278)
Q Consensus        96 ~~~~~-~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~----i~~a~~~~~~~~~~~~-~~~~---~d~~~~~--  161 (278)
                      +..++ .+||-+|+  |.|..+..+++. |+ +++++.-++..    .+.++    ..|.+.+ ....   .|+.+..  
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~i~~  237 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLK----ELGATQVITEDQNNSREFGPTIKE  237 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHH----HHTCSEEEEHHHHHCGGGHHHHHH
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHH----hcCCeEEEecCccchHHHHHHHHH
Confidence            45678 89999987  345666666665 75 67777655443    33343    3443221 1110   1211110  


Q ss_pred             ----cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          162 ----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       162 ----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                          ....+|+|+..-.-             ... ..+.++|+++|+++...
T Consensus       238 ~t~~~~~g~Dvvid~~G~-------------~~~-~~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          238 WIKQSGGEAKLALNCVGG-------------KSS-TGIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHHHHTCCEEEEEESSCH-------------HHH-HHHHHTSCTTCEEEECC
T ss_pred             HhhccCCCceEEEECCCc-------------hhH-HHHHHHhccCCEEEEec
Confidence                12468999864221             111 35678999999998864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.97  E-value=0.59  Score=39.79  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=53.6

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChH---HHHHHHHHhhhCCCcceEEEEc------cccCCcc
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSED---AINLAQSLANRDGFSCIKFLVD------DVLDTKL  162 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~---~i~~a~~~~~~~~~~~~~~~~~------d~~~~~~  162 (278)
                      .+..++.+||-+|+  |.|.++..+++. |+..+..++.++.   ..+.++    ..|.+.  ++..      ++.+...
T Consensus       163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~~--vi~~~~~~~~~~~~~~~  236 (357)
T 1zsy_A          163 EQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAEH--VITEEELRRPEMKNFFK  236 (357)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCSE--EEEHHHHHSGGGGGTTS
T ss_pred             hccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCcE--EEecCcchHHHHHHHHh
Confidence            35678899999997  456677777775 7644455555443   234443    345332  2221      1111111


Q ss_pred             C-CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          163 E-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 ~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      . +.+|+|+..-.-           ..  . ..+.++|+++|++++..
T Consensus       237 ~~~~~Dvvid~~g~-----------~~--~-~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          237 DMPQPRLALNCVGG-----------KS--S-TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSCCCSEEEESSCH-----------HH--H-HHHHTTSCTTCEEEECC
T ss_pred             CCCCceEEEECCCc-----------HH--H-HHHHHhhCCCCEEEEEe
Confidence            1 248988863211           11  1 45788999999998863

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=88.91  E-value=4.7  Score=31.96  Aligned_cols=74  Identities=14%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             CCeEEEEecCCC---HHHHHHhhCCCCcEEEEeC-ChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703          100 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus       100 ~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~-s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      ++++|-.|++.|   .++..|++.|+ +|+.++. ++...+...+.+...+ .++.++.+|+.+...           .+
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKG-VDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            457777776655   34455666776 7888876 5566666666555555 368889999987531           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        82 ~id~lv~nAg~   92 (246)
T 3osu_A           82 SLDVLVNNAGI   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=88.89  E-value=0.93  Score=37.01  Aligned_cols=76  Identities=13%  Similarity=0.151  Sum_probs=55.0

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----------CC
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ER  164 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----------~~  164 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++...+.+.+.+...+ .++.++.+|+.+...          .+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSEAGAGTDLIERAEAIA  108 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35678888887665   34556667786 89999999887777766665555 368899999987531          15


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus       109 ~iD~lvnnAg~  119 (275)
T 4imr_A          109 PVDILVINASA  119 (275)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=88.86  E-value=3.7  Score=33.11  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=50.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEE-eCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~-D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      ++++||-.|++.|   .++..|++.|+ +|+.+ +.++...+...+.+...+ .++.++.+|+.+...           .
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESG-GEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            4567887776655   34455666676 67665 777777777766666554 368899999987531           1


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+..+
T Consensus       103 g~id~li~nAg~  114 (272)
T 4e3z_A          103 GRLDGLVNNAGI  114 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=88.65  E-value=0.59  Score=39.64  Aligned_cols=93  Identities=17%  Similarity=0.115  Sum_probs=53.7

Q ss_pred             cccCCCCeEEEEecC--CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCC
Q 023703           95 DKYLSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQ  165 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG--~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~  165 (278)
                      .+..++.+||-.|++  .|..+..+++. |..+|++++ ++...+.++     .|...  ++. +-.+..      ..+.
T Consensus       138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~~--~~~-~~~~~~~~~~~~~~~g  208 (349)
T 4a27_A          138 ANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVTH--LFD-RNADYVQEVKRISAEG  208 (349)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSSE--EEE-TTSCHHHHHHHHCTTC
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCcE--EEc-CCccHHHHHHHhcCCC
Confidence            456788999999983  45666777765 455899998 555444443     23222  222 111110      1357


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+|+..-.-.              .+..+.++|+++|++++...
T Consensus       209 ~Dvv~d~~g~~--------------~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          209 VDIVLDCLCGD--------------NTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             EEEEEEECC---------------------CTTEEEEEEEEEEC-
T ss_pred             ceEEEECCCch--------------hHHHHHHHhhcCCEEEEECC
Confidence            99998632111              11567899999999998753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=88.42  E-value=1.4  Score=35.51  Aligned_cols=75  Identities=9%  Similarity=0.124  Sum_probs=54.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           .+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG-GEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC-CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4668888887655   34455666676 79999999988888777776665 368899999987531           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78999987654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=88.34  E-value=0.3  Score=41.97  Aligned_cols=94  Identities=19%  Similarity=0.160  Sum_probs=55.9

Q ss_pred             cCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEE
Q 023703           97 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLV  169 (278)
Q Consensus        97 ~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v  169 (278)
                      ..++.+||-.|+  |.|..+..+++. |+ +|++++ ++...+.+++    .|.+.  ++..+-.+..    ....+|++
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~~--v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRK----LGADD--VIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCSE--EEETTSSCHHHHHHTSCCBSEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHH----cCCCE--EEECCchHHHHHHhhcCCCCEE
Confidence            567889999984  345566666655 75 899998 6766666643    44322  2221111110    12468998


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +..-.-.            ...+....++|+++|+++....
T Consensus       253 id~~g~~------------~~~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          253 LDNVGGS------------TETWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             EESSCTT------------HHHHGGGGBCSSSCCEEEESCC
T ss_pred             EECCCCh------------hhhhHHHHHhhcCCcEEEEeCC
Confidence            8643211            0123567788999999987653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=88.29  E-value=2.8  Score=34.33  Aligned_cols=107  Identities=20%  Similarity=0.251  Sum_probs=62.3

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC---------CC---------cceEEEEccccCC
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD---------GF---------SCIKFLVDDVLDT  160 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~---------~~---------~~~~~~~~d~~~~  160 (278)
                      .+|.=||+|+=  .++..++..|+ +|+.+|.++..++.+++.....         ++         .++.. ..|..+ 
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~-   81 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ-   81 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH-
Confidence            47888888752  34445566676 8999999999988887653211         11         01222 222211 


Q ss_pred             ccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          161 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       161 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                       .-...|+|+..-+        +.......+++++...++|+.+++-.+...+..++..
T Consensus        82 -~~~~aDlVi~av~--------~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~  131 (283)
T 4e12_A           82 -AVKDADLVIEAVP--------ESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG  131 (283)
T ss_dssp             -HTTTCSEEEECCC--------SCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH
T ss_pred             -HhccCCEEEEecc--------CcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence             1134688886322        2223445667888888999886654444444444443

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=88.25  E-value=1.7  Score=35.43  Aligned_cols=75  Identities=13%  Similarity=0.148  Sum_probs=54.5

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           .+
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG-HDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678898887766   34556677786 79999999988887777766555 368899999987531           15


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            78999987654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=88.20  E-value=0.97  Score=36.80  Aligned_cols=76  Identities=12%  Similarity=0.127  Sum_probs=55.5

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.++..++...+.+...+ .++.++.+|+.+...           .
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVG-HDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            35678888887665   35556667786 89999999988887777766655 368889999987531           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus       102 g~iD~lv~nAg~  113 (271)
T 4ibo_A          102 IDVDILVNNAGI  113 (271)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.17  E-value=1.6  Score=37.34  Aligned_cols=98  Identities=12%  Similarity=0.130  Sum_probs=54.4

Q ss_pred             CCCeEEEEecCCCHHHHH----HhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~----l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~  173 (278)
                      ++.+|+=+|+|  ..+..    +...|+ +|+++|.++...+.+++....    .+.....+..+.. .-..+|+|+..-
T Consensus       166 ~~~~VlViGaG--gvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~DvVI~~~  238 (361)
T 1pjc_A          166 KPGKVVILGGG--VVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAV  238 (361)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc----eeEeeeCCHHHHHHHHcCCCEEEECC
Confidence            34799999984  33332    333476 899999999888887765422    2222222111110 013589998643


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ....-.  .+..     +.+...+.|+|||.++-...
T Consensus       239 ~~~~~~--~~~l-----i~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          239 LVPGRR--APIL-----VPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCTTSS--CCCC-----BCHHHHTTSCTTCEEEETTC
T ss_pred             CcCCCC--CCee-----cCHHHHhhCCCCCEEEEEec
Confidence            321100  0000     01456678899998877643

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=88.14  E-value=7.3  Score=31.81  Aligned_cols=77  Identities=9%  Similarity=0.063  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCC--CcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccccCCcc----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~--~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~~~~~~----------  162 (278)
                      .++++|-.|++.|   .++..+++.|+  .+|+.++.++..++.+.+.+.... -.++.++.+|+.+...          
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            5678998887665   23444555554  389999999988887766655431 1368889999987531          


Q ss_pred             -CCCccEEEeCCcc
Q 023703          163 -ERQFQLVMDKGTL  175 (278)
Q Consensus       163 -~~~fD~v~~~~~~  175 (278)
                       -++.|+++.+...
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             1478999987654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=87.93  E-value=1.5  Score=35.49  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           -+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG-GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3567888887765   34556667786 79999999988888777776655 368889999987521           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus        81 ~iD~lVnnAG~   91 (264)
T 3tfo_A           81 RIDVLVNNAGV   91 (264)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.88  E-value=1.5  Score=35.37  Aligned_cols=76  Identities=16%  Similarity=0.128  Sum_probs=55.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+-.++.++.+|+.+...           .+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5678888887655   34555666786 899999999888877777665543468899999987531           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=87.83  E-value=2.6  Score=33.69  Aligned_cols=72  Identities=13%  Similarity=0.080  Sum_probs=48.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.++.++...+...+.+   + .++.++.+|+.+...           .+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---G-DAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4568888887655   34555666776 8999999987666544332   2 357888999987421           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        79 ~iD~lv~nAg~   89 (254)
T 1hdc_A           79 SVDGLVNNAGI   89 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=87.81  E-value=4.1  Score=32.66  Aligned_cols=74  Identities=18%  Similarity=0.121  Sum_probs=46.4

Q ss_pred             CCCeEEEEecC-CCHH----HHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTG-NGLL----LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG-~G~~----~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .++++|-.|++ +|.+    +..|++.|+ +|+.++.++..-+.+++.....+  .+.++.+|+.+...           
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            46789999986 2433    444555676 79999988752223332222222  36788999987531           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+...
T Consensus        84 ~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           84 FGGLDYLVHAIAF   96 (261)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1478999987654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=87.58  E-value=1.4  Score=35.35  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=54.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...           .+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4668888887655   34556667786 79999999998888877765554 368899999987521           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        83 ~id~lv~nAg~   93 (257)
T 3imf_A           83 RIDILINNAAG   93 (257)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=87.56  E-value=0.76  Score=38.65  Aligned_cols=63  Identities=16%  Similarity=0.123  Sum_probs=42.6

Q ss_pred             eEEE-EccccCCc---cCCCccEEEeCCccceeccC---CCC-hhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          150 IKFL-VDDVLDTK---LERQFQLVMDKGTLDAIGLH---PDG-PLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       150 ~~~~-~~d~~~~~---~~~~fD~v~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ..++ ++|..+..   .+++||+|+..++|..-.-.   ... .......+.++.++|+|||.+++.....
T Consensus        39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence            5677 89987531   35689999999998532100   111 1234566788899999999999976543

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=87.52  E-value=7.8  Score=31.41  Aligned_cols=74  Identities=11%  Similarity=0.032  Sum_probs=46.3

Q ss_pred             CCCeEEEEecC--CC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .+++||-.|++  .|   .++..+++.|+ +|+.++.++..-+.+++.....+  ++.++.+|+.+...           
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFG--SDLVVKCDVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46789988876  33   24445566675 89999988752222322222222  36788899987421           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+...
T Consensus        97 ~g~iD~lv~~Ag~  109 (285)
T 2p91_A           97 WGSLDIIVHSIAY  109 (285)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2478999987654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=87.50  E-value=2.1  Score=34.95  Aligned_cols=75  Identities=17%  Similarity=0.180  Sum_probs=55.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+...           .+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG-GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4668888887766   34556677786 89999999988887777665554 368899999987521           24


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=87.43  E-value=4.9  Score=33.96  Aligned_cols=76  Identities=16%  Similarity=0.181  Sum_probs=52.1

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHH-------HHHHHHHhhhCCCcceEEEEccccCCcc-----
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDA-------INLAQSLANRDGFSCIKFLVDDVLDTKL-----  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~-------i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----  162 (278)
                      ..+++||-.|++.|   .++..|++.|+ +|+.++.++..       ++.+.+.+...+ .++.++.+|+.+...     
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~  120 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG-GKALPCIVDVRDEQQISAAV  120 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHH
Confidence            35778998888766   35556677786 89999988652       344444444444 368889999987531     


Q ss_pred             ------CCCccEEEeCCcc
Q 023703          163 ------ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ------~~~fD~v~~~~~~  175 (278)
                            .++.|+++.+...
T Consensus       121 ~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence                  1478999987654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.39  E-value=5.9  Score=32.71  Aligned_cols=103  Identities=18%  Similarity=0.243  Sum_probs=60.9

Q ss_pred             CCCeEEEEecCC-C-HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           99 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        99 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ..++|-=||+|. | .++..++ .|+ +|++.|.++..++.+.+.+....+.++++ ..|...   -...|+|+..-+  
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~---~~~aDlVieavp--   82 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELLSKIEF-TTTLEK---VKDCDIVMEAVF--   82 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGGGGEEE-ESSCTT---GGGCSEEEECCC--
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhCCeEE-eCCHHH---HcCCCEEEEcCc--
Confidence            456899999996 3 5677788 887 89999999999998887621111113332 233322   134688886322  


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  217 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  217 (278)
                            ++..-...++.++..+  ||.++...+.+.+...+
T Consensus        83 ------e~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~  115 (293)
T 1zej_A           83 ------EDLNTKVEVLREVERL--TNAPLCSNTSVISVDDI  115 (293)
T ss_dssp             ------SCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHH
T ss_pred             ------CCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHH
Confidence                  2222234455666555  77766554444444433

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=87.13  E-value=1.5  Score=39.22  Aligned_cols=89  Identities=16%  Similarity=0.049  Sum_probs=54.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      ..++++|+-+|+|  ..+..+++    .|. +|+++|.++...+.+++    .|.   .+  .++.+.  -...|+|+..
T Consensus       271 ~l~GktV~IiG~G--~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~----~Ga---~~--~~l~e~--l~~aDvVi~a  336 (494)
T 3ce6_A          271 LIGGKKVLICGYG--DVGKGCAEAMKGQGA-RVSVTEIDPINALQAMM----EGF---DV--VTVEEA--IGDADIVVTA  336 (494)
T ss_dssp             CCTTCEEEEECCS--HHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTC---EE--CCHHHH--GGGCSEEEEC
T ss_pred             CCCcCEEEEEccC--HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC---EE--ecHHHH--HhCCCEEEEC
Confidence            4678899999984  45544433    365 89999999987776653    332   21  222211  1357888864


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ..-..+.       .     ....+.|||||+++.....
T Consensus       337 tgt~~~i-------~-----~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          337 TGNKDII-------M-----LEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             SSSSCSB-------C-----HHHHHHSCTTCEEEECSSS
T ss_pred             CCCHHHH-------H-----HHHHHhcCCCcEEEEeCCC
Confidence            3222211       1     3566778999998876543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.91  E-value=1.6  Score=37.36  Aligned_cols=98  Identities=14%  Similarity=0.149  Sum_probs=53.3

Q ss_pred             CCCeEEEEecCCCHHHHHHh----hCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~----~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~  173 (278)
                      ++.+|+-+|+  |..+..++    ..|+ +|+++|.++..++.+++.+   +. .+.....+..+.. .-..+|+|+...
T Consensus       165 ~~~~V~ViGa--G~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~---g~-~~~~~~~~~~~l~~~~~~~DvVi~~~  237 (369)
T 2eez_A          165 APASVVILGG--GTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVF---GG-RVITLTATEANIKKSVQHADLLIGAV  237 (369)
T ss_dssp             CCCEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT-SEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---Cc-eEEEecCCHHHHHHHHhCCCEEEECC
Confidence            4689999998  45544443    3476 8999999998877765432   21 2222211111110 113578888754


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .....    .   ....+.+.+.+.|+|||.++....
T Consensus       238 g~~~~----~---~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          238 LVPGA----K---APKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             C--------------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             CCCcc----c---cchhHHHHHHHhhcCCCEEEEEec
Confidence            33210    0   000012567788899998776643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=86.77  E-value=2.6  Score=34.08  Aligned_cols=75  Identities=17%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+++|.++..++...+.+...+ .++.++.+|+.+...           .+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC-CeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            4668888886544   23444556676 79999999987777666665544 368899999987521           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      ++|+++.+...
T Consensus       108 ~iD~li~~Ag~  118 (272)
T 1yb1_A          108 DVSILVNNAGV  118 (272)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            78999987643

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=86.69  E-value=2.9  Score=33.25  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           .+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG-AKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4568888887655   34555666786 89999999887777666555444 368889999987521           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+..+
T Consensus        84 ~id~lv~nAg~   94 (247)
T 2jah_A           84 GLDILVNNAGI   94 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=86.62  E-value=1.8  Score=35.30  Aligned_cols=76  Identities=14%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           -
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG-GKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35678888887766   35556677786 89999999888877777666655 368889999987531           1


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus       108 g~iD~lvnnAg~  119 (276)
T 3r1i_A          108 GGIDIAVCNAGI  119 (276)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999987654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=86.56  E-value=2.8  Score=33.43  Aligned_cols=75  Identities=16%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .+++||-.|++.|   .++..|++.|+ +|++++.++...+...+.+...+ .++.++.+|+.+...           .+
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG-HDVSSVVMDVTNTESVQNAVRSVHEQEG   89 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4668888886544   34445556676 89999999877766655555444 368899999987531           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        90 ~id~vi~~Ag~  100 (260)
T 3awd_A           90 RVDILVACAGI  100 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999977643

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=86.53  E-value=2.6  Score=33.97  Aligned_cols=74  Identities=16%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCccE
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQL  168 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD~  168 (278)
                      .+++.+|--|.+.|   ..+..|++.|+ +|+.+|.+..  +.+.+.....+ .++.++.+|+.+..      ..++.|+
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~~~g~iDi   82 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDG-GNASALLIDFADPLAAKDSFTDAGFDI   82 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT-CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence            36778888888777   45667788886 8999998753  22333344444 36888999998753      1467999


Q ss_pred             EEeCCcc
Q 023703          169 VMDKGTL  175 (278)
Q Consensus       169 v~~~~~~  175 (278)
                      .+.|.-+
T Consensus        83 LVNNAGi   89 (247)
T 4hp8_A           83 LVNNAGI   89 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9987644

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.39  E-value=1.6  Score=37.53  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=54.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDK  172 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  172 (278)
                      .++.+|+=+|+  |..+..+++    .|. +|+++|.++..++.+++.+   +. .+.....+..+.. .-...|+|+..
T Consensus       166 l~g~~V~ViG~--G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~---g~-~~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          166 VEPADVVVIGA--GTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEF---CG-RIHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             BCCCEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT-SSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhc---CC-eeEeccCCHHHHHHHHcCCCEEEEC
Confidence            35789999998  455544433    376 8999999999887776543   21 2222111111110 11357888863


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      -.....  ..+..     +.+...+.|||||.++...
T Consensus       239 ~~~p~~--~t~~l-----i~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          239 VLVPGA--KAPKL-----VSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCTTS--CCCCC-----BCHHHHTTSCTTCEEEEGG
T ss_pred             CCcCCC--CCcce-----ecHHHHhcCCCCcEEEEEe
Confidence            211100  00000     1156677889999887665

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=86.21  E-value=4.6  Score=33.80  Aligned_cols=97  Identities=10%  Similarity=-0.058  Sum_probs=61.3

Q ss_pred             CCeEEEEecCCCHHHHHHhhC----CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEE
Q 023703          100 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVM  170 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~----~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~  170 (278)
                      ..+|+=+|+  |..+..+++.    | . |+.+|.++..++ +++       .++.++.+|..+...     -...|.++
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g-~-v~vid~~~~~~~-~~~-------~~~~~i~gd~~~~~~L~~a~i~~a~~vi  182 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSE-V-FVLAEDENVRKK-VLR-------SGANFVHGDPTRVSDLEKANVRGARAVI  182 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSC-E-EEEESCGGGHHH-HHH-------TTCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCC-c-EEEEeCChhhhh-HHh-------CCcEEEEeCCCCHHHHHhcChhhccEEE
Confidence            347887776  6777777665    4 3 999999999887 653       257889999987531     25678777


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHH
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  218 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  218 (278)
                      ....         +. ..........+.+.|...++....+....+.+
T Consensus       183 ~~~~---------~d-~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l  220 (336)
T 1lnq_A          183 VDLE---------SD-SETIHCILGIRKIDESVRIIAEAERYENIEQL  220 (336)
T ss_dssp             ECCS---------SH-HHHHHHHHHHHTTCTTSEEEEECSSGGGHHHH
T ss_pred             EcCC---------cc-HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence            5321         11 22222345566678887777766555444433

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=86.20  E-value=2.5  Score=33.57  Aligned_cols=73  Identities=12%  Similarity=0.162  Sum_probs=51.6

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCcc
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ  167 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~fD  167 (278)
                      .++++||-.|++.|   .++..|++.|+ +|+.++.++..++...+.+.    .++.+..+|+.+...       .++.|
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence            46778998887665   34556666786 89999999888777665442    357888999887421       24789


Q ss_pred             EEEeCCcc
Q 023703          168 LVMDKGTL  175 (278)
Q Consensus       168 ~v~~~~~~  175 (278)
                      +++.+...
T Consensus        87 ~li~~Ag~   94 (249)
T 3f9i_A           87 ILVCNAGI   94 (249)
T ss_dssp             EEEECCC-
T ss_pred             EEEECCCC
Confidence            99987654

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=86.03  E-value=3.1  Score=34.06  Aligned_cols=61  Identities=15%  Similarity=0.110  Sum_probs=42.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEe-CChHHHHHHHHHhh-hCCCcceEEEEccccCCc
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVD-YSEDAINLAQSLAN-RDGFSCIKFLVDDVLDTK  161 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D-~s~~~i~~a~~~~~-~~~~~~~~~~~~d~~~~~  161 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++ .++..++.+.+.+. ..+ .++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCCcc
Confidence            4567887776655   34455666786 899999 99887776666554 333 36888999998754

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.00  E-value=4.4  Score=33.77  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCC-cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      .+|.=||+|.=  .++..+...|.. +|+++|.++..++.+++    .|.  +.-...|..+. .-...|+|+..-+.. 
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~--~~~~~~~~~~~-~~~~aDvVilavp~~-  105 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGI--IDEGTTSIAKV-EDFSPDFVMLSSPVR-  105 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTS--CSEEESCTTGG-GGGCCSEEEECSCGG-
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCC--cchhcCCHHHH-hhccCCEEEEeCCHH-
Confidence            58999997742  344555666653 79999999988877654    332  11122333220 113468888643322 


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                               ....+++++...++||.+++-
T Consensus       106 ---------~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          106 ---------TFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             ---------GHHHHHHHHHHHSCTTCEEEE
T ss_pred             ---------HHHHHHHHHhhccCCCcEEEE
Confidence                     344566888888999876543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=85.92  E-value=1.8  Score=36.60  Aligned_cols=89  Identities=17%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             CC-CeEEEEecCCCH---HHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCCCc
Q 023703           99 SS-WSVLDIGTGNGL---LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQF  166 (278)
Q Consensus        99 ~~-~~vLDiGcG~G~---~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~f  166 (278)
                      ++ .+|| |-.|+|.   .+..+++. |+ +|+++|.++.-++.+++.    |..  .++..+-.+..       ....+
T Consensus       163 ~g~~~vl-i~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~--~~~~~~~~~~~~~v~~~~~~~g~  234 (349)
T 3pi7_A          163 EGEKAFV-MTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDI----GAA--HVLNEKAPDFEATLREVMKAEQP  234 (349)
T ss_dssp             HCCSEEE-ESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHH----TCS--EEEETTSTTHHHHHHHHHHHHCC
T ss_pred             CCCCEEE-EeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC--EEEECCcHHHHHHHHHHhcCCCC
Confidence            44 4555 5334444   44444544 76 899999999988888752    322  22222211111       01369


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+++....-           .   .+..+.++|+++|++++..
T Consensus       235 D~vid~~g~-----------~---~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          235 RIFLDAVTG-----------P---LASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             CEEEESSCH-----------H---HHHHHHHHSCTTCEEEECC
T ss_pred             cEEEECCCC-----------h---hHHHHHhhhcCCCEEEEEe
Confidence            999864321           1   1266788999999998875

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=85.90  E-value=2.2  Score=34.00  Aligned_cols=109  Identities=7%  Similarity=0.065  Sum_probs=65.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEE-eCChHHHHHHHHHhhhCCCcceEEEEccccCCcc------------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~-D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------------  162 (278)
                      +++++|-.|++.|   .++..|++.|+ +|+.+ +.++...+...+.+...+ .++.++.+|+.+...            
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESLHGVEALYSSLDNEL   83 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhcC-CceEEEecCcCCHHHHHHHHHHHHHHh
Confidence            4678888887766   34556666786 67665 566666666655555554 368888999987421            


Q ss_pred             -----CCCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEe
Q 023703          163 -----ERQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 -----~~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~  209 (278)
                           .++.|+++.+..+.... +........           ..+++.+...|+++|.++..+
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~is  147 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS  147 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeC
Confidence                 02489999876542211 111111111           234456666777788877764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=85.81  E-value=3.4  Score=33.15  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+...           .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG-VEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4668888887665   34555666786 79999999887776666555444 358889999987521           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987643

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=85.78  E-value=1.5  Score=36.23  Aligned_cols=76  Identities=17%  Similarity=0.125  Sum_probs=55.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+..++.++.+|+.+...           .+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            5678888887665   34556667786 899999999888777776665543468899999987521           24


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus       119 ~iD~lvnnAg~  129 (293)
T 3rih_A          119 ALDVVCANAGI  129 (293)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=85.76  E-value=3.1  Score=33.74  Aligned_cols=75  Identities=15%  Similarity=0.117  Sum_probs=52.6

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+...           -+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG-VEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4668888887655   34455666676 89999999887776666555444 368889999987421           14


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        99 ~iD~lv~~Ag~  109 (277)
T 2rhc_B           99 PVDVLVNNAGR  109 (277)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999987643

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.67  E-value=3.1  Score=33.75  Aligned_cols=76  Identities=20%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeC-------------ChHHHHHHHHHhhhCCCcceEEEEccccCCc
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-------------SEDAINLAQSLANRDGFSCIKFLVDDVLDTK  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~-------------s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~  161 (278)
                      ..++++|-.|++.|   .++..|++.|+ +|+.+|.             ++..++.+.+.....+ .++.++.+|+.+..
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG-RKALTRVLDVRDDA   90 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTTCHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHH
Confidence            35678888888776   35566777786 8999998             6777777666665555 36888999998753


Q ss_pred             c-----------CCCccEEEeCCcc
Q 023703          162 L-----------ERQFQLVMDKGTL  175 (278)
Q Consensus       162 ~-----------~~~fD~v~~~~~~  175 (278)
                      .           .++.|+++.+...
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            1           1478999987654

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=85.36  E-value=0.63  Score=40.52  Aligned_cols=44  Identities=18%  Similarity=0.121  Sum_probs=37.5

Q ss_pred             CeEEEEecCCCHHHHHHhhCC--CCc----EEEEeCChHHHHHHHHHhhh
Q 023703          101 WSVLDIGTGNGLLLQELSKQG--FSD----LTGVDYSEDAINLAQSLANR  144 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~--~~~----v~~~D~s~~~i~~a~~~~~~  144 (278)
                      .+|+|+.||.|.+...+.+.|  +.-    |.++|+++.+++.-+.++..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            489999999999999988876  334    88899999999998888754

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=85.27  E-value=2.6  Score=33.64  Aligned_cols=76  Identities=12%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC--CCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~--~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++.++..++.+.+.+...  +..++.++.+|+.+...           
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            4668888887766   34556666686 8999999998887776665443  22368889999987531           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+..+
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1578999987654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=85.26  E-value=2.7  Score=33.96  Aligned_cols=75  Identities=13%  Similarity=0.083  Sum_probs=50.0

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeC-ChHHHHHHHHHhhhC-CCcceEEEEccccCC----cc-------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRD-GFSCIKFLVDDVLDT----KL-------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~-s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~----~~-------  162 (278)
                      .++++|-.|++.|   .++..|++.|+ +|+.++. ++..++.+.+.+... + .++.++.+|+.+.    ..       
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCCccccHHHHHHHHHH
Confidence            4567887776554   33445566676 8999999 887776665555433 3 3688899999876    31       


Q ss_pred             ----CCCccEEEeCCcc
Q 023703          163 ----ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ----~~~fD~v~~~~~~  175 (278)
                          .++.|+++.+..+
T Consensus        88 ~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHhcCCCCEEEECCCC
Confidence                1368999987654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=85.21  E-value=3.4  Score=33.55  Aligned_cols=76  Identities=17%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~~-----------  162 (278)
                      .+++||-.|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+..  ++.++.+|+.+...           
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            5678888887665   34556677786 8999999998888777766655421  58889999987531           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+...
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1478999987653

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=85.19  E-value=4.4  Score=32.73  Aligned_cols=75  Identities=12%  Similarity=0.097  Sum_probs=53.0

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++.+|--|++.|   ..+..|++.|+ +|+.+|.++...+.+.+..+ .+ .++.++.+|+.+...           -
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQ-RQ-PRATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHH-HC-TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHh-cC-CCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            36788999998887   35667788886 89999988765554444333 23 368889999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+..+
T Consensus        82 G~iDiLVNnAGi   93 (258)
T 4gkb_A           82 GRLDGLVNNAGV   93 (258)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            689999988654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=85.17  E-value=6.3  Score=31.84  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             eEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceec
Q 023703          102 SVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       102 ~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  179 (278)
                      +|.=||||.=  .++..+...|. +|+++|.++..++.+.+    .+... . ...|..+.   ...|+|+..-+-    
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----~g~~~-~-~~~~~~~~---~~~D~vi~av~~----   67 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD-E-AGQDLSLL---QTAKIIFLCTPI----   67 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS-E-EESCGGGG---TTCSEEEECSCH----
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh----CCCCc-c-ccCCHHHh---CCCCEEEEECCH----
Confidence            5777887652  23444555676 89999999988776643    23211 1 12333322   457888864322    


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                            .....+++.+...++|+..++-
T Consensus        68 ------~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           68 ------QLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             ------HHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ------HHHHHHHHHHHhhCCCCCEEEE
Confidence                  2345566788888888775543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=84.99  E-value=12  Score=30.58  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=58.7

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh-------hCCC---------------cceEEEEcc
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGF---------------SCIKFLVDD  156 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~-------~~~~---------------~~~~~~~~d  156 (278)
                      .+|.-||+|.=  .++..++..|+ +|+.+|.++..++.+++...       ..|.               .++.+ ..|
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~~~   93 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STD   93 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-ecC
Confidence            47999999863  35556677776 89999999998887654322       1121               01222 222


Q ss_pred             ccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          157 VLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       157 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      ..+  .-...|+|+..-+        ........+++++...++|+.+++..+...+..
T Consensus        94 ~~~--~~~~aD~Vi~avp--------~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~  142 (302)
T 1f0y_A           94 AAS--VVHSTDLVVEAIV--------ENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT  142 (302)
T ss_dssp             HHH--HTTSCSEEEECCC--------SCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH
T ss_pred             HHH--hhcCCCEEEEcCc--------CcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH
Confidence            211  1134688886321        112223456678888888887554333343333

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=84.91  E-value=5.7  Score=31.80  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=44.8

Q ss_pred             CCCeEEEEecC--CC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTG--NG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      .+++||-.|++  .|   .++..|++.|+ +|+.++.++...+.+++.....+  ...++.+|+.+...           
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcC--CcEEEEccCCCHHHHHHHHHHHHHH
Confidence            45688988876  33   34445566676 79999988732222222222222  34678899887421           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+...
T Consensus        85 ~g~iD~lv~~Ag~   97 (265)
T 1qsg_A           85 WPKFDGFVHSIGF   97 (265)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1478999987654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=84.74  E-value=2.7  Score=33.30  Aligned_cols=76  Identities=8%  Similarity=0.123  Sum_probs=53.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc--cCCc-----------c
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK-----------L  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~--~~~~-----------~  162 (278)
                      +++++|-.|++.|   .++..|++.|+ +|+.++.++..++...+.+...+..+..++..|+  .+..           .
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            5678888887655   34556666786 8999999999888887777666544677888887  3321           0


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+...
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            1478999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	278
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-09
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-07
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	1e-06
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	3e-06
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	7e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-05
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	2e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	3e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	6e-05
d1wxxa2	318	c.66.1.51 (A:65-382) Hypothetical protein TTHA1280	9e-05
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	1e-04
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	2e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	4e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	7e-04
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	7e-04
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	8e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	9e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	0.001
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	0.002
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.003
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.003
d2b78a2	317	c.66.1.51 (A:69-385) Hypothetical protein SMu776,	0.004

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT 160
           SVLD+G G G  L +  + G  +  GVD +E +IN A+  A        + F   D    
Sbjct: 27  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 86

Query: 161 KLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212
            ++   +      +  +            +   ++++ + PGG  ++T  + 
Sbjct: 87  HMDLGKE-FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 31/145 (21%), Positives = 50/145 (34%), Gaps = 11/145 (7%)

Query: 75  SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 126
           S GH   H E LK +         + +N        VLD+G G G+L    +K G   + 
Sbjct: 3   SYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVL 62

Query: 127 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 186
           GVD SE        +        I  +   + +  L  +   V+     + +G       
Sbjct: 63  GVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIIS---EWMGYFLLFES 119

Query: 187 KRIMYWDSVSKLVAPGGLLVITSCN 211
                  + +K +A GG +    C 
Sbjct: 120 MLDSVLYAKNKYLAKGGSVYPDICT 144

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 10/124 (8%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS---------CIKF 152
            VL    G    +  LS QG+  + G + SE A+    +                     
Sbjct: 23  RVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81

Query: 153 LVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS 212
           +     D        +       D   +       R  Y   +  L+      ++ +   
Sbjct: 82  IEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141

Query: 213 TKDE 216
            +  
Sbjct: 142 DQAL 145

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 11/144 (7%)

Query: 75  SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 126
           S  H   H E L+           + +N        VLD+G G G+L    +K G   + 
Sbjct: 6   SYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVI 65

Query: 127 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 186
           GVD S       + +        I  L   + D  L      ++    +    L+     
Sbjct: 66  GVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMD 125

Query: 187 KRIMYWDSVSKLVAPGGLLVITSC 210
             +   D        GGL+    C
Sbjct: 126 TVLYARDHYLV---EGGLIFPDKC 146

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG---------FSCIKF 152
            VLD+  G G+    L ++GF  +T VD S+  +  A                      +
Sbjct: 59  RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117

Query: 153 LVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN 211
           L  D      +    ++    +   +        +  +   +++ +V PGGLLVI   N
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 7/139 (5%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           VLDIG G G      S     +  GVD +++ + +A S A   G   ++F          
Sbjct: 20  VLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78

Query: 163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 222
                   D  T      H     K +     V K     G  ++    + +D ++ E  
Sbjct: 79  PDDS---FDIITCRYAAHHFSDVRKAVREVARVLK---QDGRFLLVDHYAPEDPVLDEFV 132

Query: 223 NLSQRRIGVSQEHEIKDEE 241
           N   R    S   E    E
Sbjct: 133 NHLNRLRDPSHVRESSLSE 151

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 38/154 (24%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------------- 148
           +++DIG+G  +     +   F D+T  D+++      +    ++  +             
Sbjct: 54  TLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 113

Query: 149 ----------------------CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPL 186
                                      + + L   +      V+    ++      D   
Sbjct: 114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR 173

Query: 187 KRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
                  +++ L+ PGG LV T        +V +
Sbjct: 174 A---ALCNLASLLKPGGHLVTTVTLRLPSYMVGK 204

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 23/162 (14%)

Query: 96  KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 155
            +    ++L++G+  G     L +    D+T V+ SE+AI+ AQ               D
Sbjct: 17  PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFED 75

Query: 156 DVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD 215
             L  + +      + +   D     P   LKRI         +A GG L +   N    
Sbjct: 76  AQLPRRYDNIVLTHVLEHIDD-----PVALLKRIND-----DWLAEGGRLFLVCPN---- 121

Query: 216 ELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTY 257
                 +N   R+I V       +             H  TY
Sbjct: 122 ------ANAVSRQIAVKMGIISHNSAVT--EAEFAHGHRCTY 155

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 7/139 (5%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 162
           VLD+ TG G +    +      +   D +ED + +A++    +G   ++++  D      
Sbjct: 19  VLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 77

Query: 163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVS 222
             +   ++          +P   +            +  GG L++   ++ +++      
Sbjct: 78  TDERFHIVTCRIAAHHFPNPASFVSEAYRV------LKKGGQLLLVDNSAPENDAFDVFY 131

Query: 223 NLSQRRIGVSQEHEIKDEE 241
           N  ++    S     K  +
Sbjct: 132 NYVEKERDYSHHRAWKKSD 150

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.3 bits (96), Expect = 6e-05
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 91  VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI 150
           +  N        VLD+G+G G+L    +K G   + G++ S  +    + +        +
Sbjct: 25  MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVV 84

Query: 151 KFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC 210
             +   V + +L  +   ++     + +G              +  K +AP GL+     
Sbjct: 85  TIIKGKVEEVELPVEKVDIIIS---EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA 141

Query: 211 NS 212
             
Sbjct: 142 TL 143

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

 Score = 41.0 bits (95), Expect = 9e-05
 Identities = 39/216 (18%), Positives = 65/216 (30%), Gaps = 33/216 (15%)

Query: 8   SIVYSSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWT 67
           S++  +D    + EG    L L          E    +E      V +  D+        
Sbjct: 79  SVLAKNDARTRELEG----LPLYVRPLLGEVPERVQVQEGR----VRYLVDLRAGQ---- 126

Query: 68  KSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTG 127
                    G  L+              +       LD+ +  G     L+     ++  
Sbjct: 127 -------KTGAYLDQ------RENRLYMERFRGERALDVFSYAGGFALHLALGFR-EVVA 172

Query: 128 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM-DKGTLD----AIGLHP 182
           VD S +A+  A+  A  +G   ++ L  +  D     + +    D   LD    A G   
Sbjct: 173 VDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKD 232

Query: 183 DGPLKRIMYW--DSVSKLVAPGGLLVITSCNSTKDE 216
                R          KL+  GG+L   SC+    E
Sbjct: 233 VERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTE 268

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTK 161
           +LD+G+G+G +L   ++      TG+D S      A+  A        + F+ +D     
Sbjct: 37  ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
              +  +    G     G             + +++ + PGG+++I 
Sbjct: 97  ANEKCDVAACVGATWIAGGFAG-------AEELLAQSLKPGGIMLIG 136

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 13/148 (8%)

Query: 101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLD 159
             VLD+ T  G      +  G  ++ G+D S  AI  A+  A  +G     KF+V    +
Sbjct: 147 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE 206

Query: 160 T-KLERQFQLVMDKGTLDAI--GLHP-DGPLKRIMYWD---SVSKLVAPGGLLVITSCNS 212
             +  ++     D   LD      H  D       Y++   +   LV  GG+LV  SC+ 
Sbjct: 207 EMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266

Query: 213 TKD-----ELVHEVSNLSQRRIGVSQEH 235
             D     +++      + + + + + +
Sbjct: 267 HVDLQMFKDMIIAAGAKAGKFLKMLEPY 294

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 103 VLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR-------DGFSCIKFLV 154
            +D+G+G G  + + + + G +   G +  +DA +L               G        
Sbjct: 220 FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279

Query: 155 DDVLDTKLERQFQLVMDKGTLDAI-GLHPDGPLKRIMYWDSVSKLVAPGGLLVIT 208
                     +   ++ +  +  +     D  L + +    + +    G  ++  
Sbjct: 280 SLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEK--ILQTAKVGCKIISL 332

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 101 WSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 158
             VL+ G G+G L   L +       +   +   D    A     R   S       D  
Sbjct: 98  ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHA-----RRNVSGCYGQPPDNW 152

Query: 159 DTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV 218
              +       +  G++D   L    P +     D+VS+L+  GG+L++     T+   +
Sbjct: 153 RLVVSDLADSELPDGSVDRAVLDMLAPWE---VLDAVSRLLVAGGVLMVYVATVTQLSRI 209

Query: 219 HE 220
            E
Sbjct: 210 VE 211

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 98  LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 157
           +   SV+D GTGNG+L       G   +T  D   DAI  A+       F          
Sbjct: 47  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV----- 101

Query: 158 LDTKLERQFQLVMDKGTLDAIGLHPDGPLKR 188
             +++  ++   +      ++  H D     
Sbjct: 102 --SEISGKYDTWIMNPPFGSVVKHSDRAFID 130

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ--SLANRDGFSCIKFLVDDVLDT 160
           VL++    G+     +  G    T VD S+ AI  A+   +      + I+++ +D +  
Sbjct: 136 VLNLFGYTGVASLVAAAAGAEV-THVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK- 193

Query: 161 KLERQFQLVMDKGTLDAIGLHP--DGPLKRIMYWD----------SVSKLVAPGGLLVIT 208
                 +      T D I   P   G       W              ++++P  L ++ 
Sbjct: 194 ---FIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250

Query: 209 SCNSTK--DELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTFMFG 263
           +  S +     +HE+   + R  G         E   RE         R   T +F 
Sbjct: 251 TAYSIRASFYSMHELMRETMRGAGGVVAS---GELVIREAGLDGKTPGRVLSTSLFS 304

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 37.6 bits (86), Expect = 9e-04
 Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 11/184 (5%)

Query: 80  LNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSK--QGFSDLTGVDYSEDAINL 137
           L + +D  S  V    K      ++D G G G L   L       S  TG+D  E  +  
Sbjct: 8   LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE 67

Query: 138 AQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSK 197
           A+    R      +FL  D  + +L  ++ + +    L    LH   P         +  
Sbjct: 68  ARE-LFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL----LHMTTPET---MLQKMIH 119

Query: 198 LVAPGGLLVITSCNSTKDELVHEVSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTY 257
            V  GG ++    +   +   + +    Q         +   E   +    +  N     
Sbjct: 120 SVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQR-NGKDGNIGMKI 178

Query: 258 PTFM 261
           P ++
Sbjct: 179 PIYL 182

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 161
            +D+G G G +  EL+ +    +  +D + +AI+  +    R G    +  +  D  +  
Sbjct: 37  AVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95

Query: 162 LE-RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE 220
            +     + +  G+   +                +   + PGG +++T+          E
Sbjct: 96  CKIPDIDIAVVGGSGGEL----------QEILRIIKDKLKPGGRIIVTAILLETKFEAME 145

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 21/132 (15%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-------------- 147
            V     G  + ++  + +G   + GV+ SE  I    +  N                  
Sbjct: 48  RVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106

Query: 148 ---SCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGL 204
                I      + D     +  +       D   L    P  R  Y D++  L+     
Sbjct: 107 SSSGNISLYCCSIFDL---PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQ 163

Query: 205 LVITSCNSTKDE 216
            ++   +    +
Sbjct: 164 YLLCVLSYDPTK 175

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 146
           ++DIG+G  +     +   F D+T  D+ E            + 
Sbjct: 58  LIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP 101

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 6/160 (3%)

Query: 102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 161
             LD+  G G L + L  +   +   VD S++ ++ A++     G        D    + 
Sbjct: 40  DYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD---ISN 95

Query: 162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK-DELVHE 220
           L    +  +    LD+     D       Y+ +VS  +  GG+ +    +  K  +++  
Sbjct: 96  LNINRKFDLITCCLDSTNYIID-SDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGN 154

Query: 221 VSNLSQRRIGVSQEHEIKDEEACREPPFRYLNHVRTYPTF 260
                             +++        ++     Y  F
Sbjct: 155 NDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 24/168 (14%), Positives = 62/168 (36%), Gaps = 11/168 (6%)

Query: 72  ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS 131
           + ++ G M     D +    E  +   +  +VL++ +         +  G    T VD +
Sbjct: 117 VFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLA 176

Query: 132 EDAINLAQSLANRD--GFSCIKFLVDDVLD-TKLERQFQLVMDKGTLDAIGLHPDGPLKR 188
           + +  L+ +    +    +  + +V DV D  K  R+  L  D   +D      +     
Sbjct: 177 KRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVF 236

Query: 189 IMYWD------SVSKLVAPGGLLVITSCNS--TKDELVHEVSNLSQRR 228
            +  D         ++++  GL++ ++  +  T  +   ++     ++
Sbjct: 237 SVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQ 284

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.87
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.87
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.83
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.83
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.82
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.81
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.81
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.81
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.8
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.8
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.8
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.8
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.79
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.78
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.78
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.78
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.76
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.74
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.74
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.73
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.72
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.72
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.72
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.71
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.71
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.68
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.66
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.64
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.64
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.64
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.63
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.63
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.63
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.62
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.62
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.61
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.61
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.59
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.59
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.59
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.59
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.58
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.58
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.58
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.58
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.57
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.57
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.57
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.56
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.55
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.55
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.54
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.54
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.54
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.53
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.51
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.49
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.48
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.47
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.46
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.44
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.43
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.42
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.36
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.29
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.29
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.28
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.23
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.16
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.13
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.07
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.06
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.06
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.04
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.03
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.02
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.01
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.96
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.96
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.91
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.87
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.86
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.86
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.85
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.83
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.8
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.8
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.73
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.7
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.69
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.6
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.6
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.6
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.46
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.42
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.27
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.11
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.69
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.68
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.66
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.35
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.34
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.29
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.28
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.26
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.18
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.12
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.1
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.01
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.0
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.95
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.83
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.75
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.71
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.59
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.32
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.28
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.27
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.27
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.2
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.06
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.96
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.86
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.83
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.83
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.76
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.62
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.6
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.58
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.44
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.4
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.32
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.18
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.81
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.77
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.48
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.45
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.39
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.38
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.33
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.27
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.1
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.09
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	94.07
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.74
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.7
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.67
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.63
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.26
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.19
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.19
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	93.18
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.1
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.77
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	92.74
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.64
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	92.62
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.36
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	92.34
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.15
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.1
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.83
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.21
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.09
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.91
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	90.69
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.48
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.25
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.15
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.76
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.72
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.69
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.68
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	89.64
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	89.63
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.6
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.46
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.19
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.18
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.07
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	88.47
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	88.11
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	88.07
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	87.1
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.93
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	86.86
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	86.7
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	86.17
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.13
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.91
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	85.4
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	85.2
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.81
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.81
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.73
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	82.85
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	81.8
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.63
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.07
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	80.14

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.87  E-value=1.5e-22  Score=164.00  Aligned_cols=119  Identities=14%  Similarity=0.304  Sum_probs=102.5

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  173 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  173 (278)
                      .++.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++++..+.+++++.++|+.+.++ +++||+|++..
T Consensus        11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~   89 (231)
T d1vl5a_          11 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI   89 (231)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES
T ss_pred             cCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccc
Confidence            4557788999999999999999999974 899999999999999999999888889999999999874 68999999999


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      +++++.       +...+++++.++|||||++++.+...+.......+
T Consensus        90 ~l~~~~-------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~  130 (231)
T d1vl5a_          90 AAHHFP-------NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVF  130 (231)
T ss_dssp             CGGGCS-------CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHH
T ss_pred             cccccC-------CHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHH
Confidence            999886       77788899999999999999987655444444433

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=3.5e-22  Score=162.29  Aligned_cols=118  Identities=17%  Similarity=0.302  Sum_probs=102.4

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ....+++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+++++.++++|+.+.++ +++||+|++.
T Consensus        11 ~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~   89 (234)
T d1xxla_          11 TAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCR   89 (234)
T ss_dssp             HHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             HhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeee
Confidence            3456789999999999999999999987 4899999999999999999998888889999999998775 6899999999


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      .+++++.       +...+++++.++|||||++++.....+......
T Consensus        90 ~~l~~~~-------d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~  129 (234)
T d1xxla_          90 YAAHHFS-------DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLD  129 (234)
T ss_dssp             SCGGGCS-------CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH
T ss_pred             ceeeccc-------CHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHH
Confidence            9998875       677888999999999999999865554444333

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4.9e-21  Score=156.53  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=98.7

Q ss_pred             hhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccE
Q 023703           91 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQL  168 (278)
Q Consensus        91 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~  168 (278)
                      +....++.++.+|||||||+|..+..+++. | .+|+|+|+|+.+++.|+++....++.+ ++++++|+.+...+++||+
T Consensus        25 l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~  103 (245)
T d1nkva_          25 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDV  103 (245)
T ss_dssp             HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEE
T ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeE
Confidence            334456788999999999999999999886 5 489999999999999999999998764 9999999999877889999


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |++..+++++.       +...+++++.++|||||++++..+
T Consensus       104 v~~~~~~~~~~-------d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_         104 AACVGATWIAG-------GFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             EEEESCGGGTS-------SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             EEEEehhhccC-------CHHHHHHHHHHHcCcCcEEEEEec
Confidence            99999988876       567788999999999999999864

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=2.2e-20  Score=147.67  Aligned_cols=109  Identities=17%  Similarity=0.284  Sum_probs=97.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      ++++|||||||+|..+..++++|+ +|+|+|+|+.+++.++++.+..+++++.+...|+....++++||+|++..+++++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~  108 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL  108 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeecC
Confidence            445999999999999999999986 8999999999999999999999988899999999998888999999999998876


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      .     ......+++++.++|+|||++++.+....
T Consensus       109 ~-----~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  138 (198)
T d2i6ga1         109 E-----AQTIPGLIANMQRCTKPGGYNLIVAAMDT  138 (198)
T ss_dssp             C-----TTHHHHHHHHHHHTEEEEEEEEEEEEBC-
T ss_pred             C-----HHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            4     34667889999999999999999876543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.6e-20  Score=151.86  Aligned_cols=110  Identities=21%  Similarity=0.210  Sum_probs=92.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-----------------CcceEEEEccccC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----------------FSCIKFLVDDVLD  159 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-----------------~~~~~~~~~d~~~  159 (278)
                      ..++.+|||+|||+|..+..|++.|+ +|+|+|+|+.+|+.|+++.....                 ..++++.++|+.+
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            35778999999999999999999997 89999999999999998865321                 1368999999988


Q ss_pred             Ccc--CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          160 TKL--ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       160 ~~~--~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ...  .+.||+|+....++++.     +.....+++++.++|||||.+++.+.+.
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~-----~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAIN-----PGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSC-----GGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             ccccccCceeEEEEEEEEEecc-----chhhHHHHHHHHhhcCCcceEEEEEccc
Confidence            753  57899999998887764     5577888999999999999988876543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.1e-20  Score=152.62  Aligned_cols=172  Identities=17%  Similarity=0.211  Sum_probs=127.6

Q ss_pred             cccccCcchhhHHhhhh-cccccccccCcccccccccccchhhhcc-ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEE
Q 023703           51 GEVWFGADVMDVVASWT-KSLCISISQGHMLNHVEDLKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTG  127 (278)
Q Consensus        51 ~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~  127 (278)
                      .+|--++|.+++++.|. ..+...+.++.+.|+++ ++..+...+. ....+.+|||+|||+|..++.++.. +..+|++
T Consensus        59 ~rr~~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpe-TE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~a  137 (274)
T d2b3ta1          59 TRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPD-TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIA  137 (274)
T ss_dssp             HHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTT-HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEE
T ss_pred             HHHhcCcChhhhcCcEEEeeeEEEEeccccccccc-hhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeee
Confidence            34456788899888333 22234799999999873 3222222222 2245678999999999999999886 4569999


Q ss_pred             EeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee----------ccCC--------CChhhHH
Q 023703          128 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI----------GLHP--------DGPLKRI  189 (278)
Q Consensus       128 ~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~----------~~~~--------~~~~~~~  189 (278)
                      +|+|+.+++.|++|++.++++++.++++|+.+...+.+||+|++|++|-..          ...|        ++.....
T Consensus       138 vDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~  217 (274)
T d2b3ta1         138 VDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV  217 (274)
T ss_dssp             ECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHH
T ss_pred             ccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHH
Confidence            999999999999999999987899999999886566799999999997321          0111        1234456


Q ss_pred             HHHHHHHhcccCCcEEEEEecCCChHHHHHHHhh
Q 023703          190 MYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSN  223 (278)
Q Consensus       190 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  223 (278)
                      .++..+.+.|+|||.+++.............+..
T Consensus       218 ~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~  251 (274)
T d2b3ta1         218 HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFIL  251 (274)
T ss_dssp             HHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHH
Confidence            7889999999999999998776666666555554

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=8.4e-20  Score=149.41  Aligned_cols=108  Identities=24%  Similarity=0.411  Sum_probs=93.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC-Cccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK-GTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~-~~~~  176 (278)
                      .++++|||||||+|..+..+++.|+ +|+|+|+|+.|++.|+++++..+. ++.++++|+.+.+++++||+|++. .++.
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~~~fD~I~~~~~~~~  117 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc-cchheehhhhhcccccccchHhhhhhhhh
Confidence            3567999999999999999999986 899999999999999999988775 799999999998888899999986 4555


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++     ...+...+|+++.++|||||++++...+.
T Consensus       118 ~~-----~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         118 YF-----DEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             cC-----ChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            44     23467788999999999999999976653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=8.9e-20  Score=146.68  Aligned_cols=107  Identities=25%  Similarity=0.405  Sum_probs=93.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...+. ++.++.+|+.+.+. +++||+|++..+++
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc-cccccccccccccccCcCceEEEEecchh
Confidence            4667999999999999999999975 899999999999999999887763 68889999998765 58999999999888


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.     ..+...+++++.++|||||++++...+
T Consensus       114 ~~~-----~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         114 HFE-----PLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             GCC-----HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hCC-----hhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            763     346778899999999999999988664

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=146.21  Aligned_cols=111  Identities=16%  Similarity=0.241  Sum_probs=95.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      ..++.+|||||||+|.++..++..+..+|+|+|+|+.+++.|++++...+..+++++++|+.+.++ +++||+|++..++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  137 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            356679999999999999998877566899999999999999999988776778999999998765 6899999999999


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++.     ..+...++++++++|||||.+++.+...
T Consensus       138 ~h~~-----~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         138 GHLT-----DQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ccch-----hhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            8874     3345678999999999999999986433

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.80  E-value=1.3e-19  Score=147.90  Aligned_cols=107  Identities=21%  Similarity=0.294  Sum_probs=92.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeC-Cccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK-GTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~-~~~~  176 (278)
                      .++++|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...+. +++++++|+.+...+++||+|++. .++.
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-cceeeccchhhhcccccccccceeeeeee
Confidence            4567999999999999999999985 899999999999999999988875 799999999998878899999975 4554


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++    ....+...++++++++|||||.+++...
T Consensus       114 ~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_         114 YI----IDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             GC----CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cc----CCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            44    2456778899999999999999998654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=9.2e-20  Score=148.63  Aligned_cols=161  Identities=20%  Similarity=0.250  Sum_probs=114.6

Q ss_pred             cHHHHHHHHHHHhhchhccCCccccccCcchhhHHhhhh----cccccccccCccccccc-ccccchhhhcc-ccCCCCe
Q 023703           29 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWT----KSLCISISQGHMLNHVE-DLKSEPVEEND-KYLSSWS  102 (278)
Q Consensus        29 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~  102 (278)
                      ..+-|...|++...+..-    ++.|.       .+.|.    ....+.+.+|.-+.+.. ++.+.+++.+. ...++.+
T Consensus        55 ~~~dW~~~w~~~~~p~~~----~~~~v-------~~~~~~~~~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~  123 (254)
T d2nxca1          55 GDEDWLEAWRRDLKPALA----PPFVV-------LAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDK  123 (254)
T ss_dssp             CHHHHHHHHHHHCCCEEE----TTEEE-------ECTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCE
T ss_pred             CcchHHHHHHhhCCCEEE----CCEEE-------EeccccCCCcceEEEEccccccCccccchhhHHHHHHHhhcCccCE
Confidence            356788888876544431    12221       11221    22335566666555442 35555666653 4578899


Q ss_pred             EEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceeccCC
Q 023703          103 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHP  182 (278)
Q Consensus       103 vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~  182 (278)
                      |||+|||+|.+++.+++.|. +|+|+|+|+.+++.|++|++.+++ ++++.++|+.+....++||+|+++...+      
T Consensus       124 VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~~~~~~fD~V~ani~~~------  195 (254)
T d2nxca1         124 VLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAALPFGPFDLLVANLYAE------  195 (254)
T ss_dssp             EEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHHGGGCCEEEEEEECCHH------
T ss_pred             EEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccccccccccchhhhccccc------
Confidence            99999999999999999885 899999999999999999999987 5788999987655678999999874433      


Q ss_pred             CChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          183 DGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       183 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                          ....+++.+.++|||||+++++....
T Consensus       196 ----~l~~l~~~~~~~LkpGG~lilSgil~  221 (254)
T d2nxca1         196 ----LHAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             ----HHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             ----cHHHHHHHHHHhcCCCcEEEEEecch
Confidence                44566789999999999999986433

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.80  E-value=1.1e-19  Score=151.41  Aligned_cols=108  Identities=14%  Similarity=0.279  Sum_probs=96.1

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCccEEEe
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMD  171 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~v~~  171 (278)
                      ..+.++.+|||||||+|.++..++++ ++ +|+|+|+|+.+++.|+++....++. +++++++|+.+.+. +++||+|++
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~  141 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWS  141 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEE
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhc
Confidence            35678899999999999999999987 54 8999999999999999999988875 59999999999874 588999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..++.|+.       +...+++++.++|||||++++.++
T Consensus       142 ~~~l~h~~-------d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         142 QDAFLHSP-------DKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             ESCGGGCS-------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhhcc-------CHHHHHHHHHHhcCCCcEEEEEEe
Confidence            99998885       667788999999999999999764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.79  E-value=2e-19  Score=144.94  Aligned_cols=107  Identities=22%  Similarity=0.355  Sum_probs=93.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ...++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.|+++..    .++.++.+|+.+..++++||+|++..++
T Consensus        17 ~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~~~fD~I~~~~vl   91 (225)
T d2p7ia1          17 PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVL   91 (225)
T ss_dssp             GGCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCSSCEEEEEEESCG
T ss_pred             hhCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----ccccccccccccccccccccccccccee
Confidence            334677999999999999999999875 89999999999999998753    3689999999988888999999999999


Q ss_pred             ceeccCCCChhhHHHHHHHHH-hcccCCcEEEEEecCCCh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVS-KLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~  214 (278)
                      +|+.       +...++.++. ++|+|||.+++..++...
T Consensus        92 eh~~-------d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~  124 (225)
T d2p7ia1          92 EHID-------DPVALLKRINDDWLAEGGRLFLVCPNANA  124 (225)
T ss_dssp             GGCS-------SHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred             EecC-------CHHHHHHHHHHHhcCCCceEEEEeCCccc
Confidence            9886       6677788987 899999999999887554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=1.1e-18  Score=137.21  Aligned_cols=113  Identities=16%  Similarity=0.197  Sum_probs=94.9

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEccccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ...++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|+++++.+++.+  +++..+|+.+...+++||+|+++.
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~  127 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNP  127 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECC
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcc
Confidence            44678899999999999999999875 589999999999999999999887754  899999998865678999999998


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChH
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKD  215 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  215 (278)
                      ++++.      ......+++++.++|+|||.+++........
T Consensus       128 p~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  163 (194)
T d1dusa_         128 PIRAG------KEVLHRIIEEGKELLKDNGEIWVVIQTKQGA  163 (194)
T ss_dssp             CSTTC------HHHHHHHHHHHHHHEEEEEEEEEEEESTHHH
T ss_pred             cEEec------chhhhhHHHHHHHhcCcCcEEEEEEeCcCCH
Confidence            87543      2345678899999999999998876555443

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.78  E-value=4.3e-19  Score=147.64  Aligned_cols=111  Identities=20%  Similarity=0.201  Sum_probs=96.3

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEE
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  170 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~  170 (278)
                      .+....++.+|||+|||+|.++..++.. + ..+|+|+|+|+.+++.|++++...+. ++++.++|+.+.+++++||+|+
T Consensus        21 ~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~~~fD~v~   99 (281)
T d2gh1a1          21 TVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAI   99 (281)
T ss_dssp             TTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSSCEEEEE
T ss_pred             HHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccccCCceEEE
Confidence            3334567789999999999999999986 2 24899999999999999999988775 7999999999887778899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +..+++++.       +...+++++.++|||||.+++.++.
T Consensus       100 ~~~~l~~~~-------d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1         100 CHAFLLHMT-------TPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EESCGGGCS-------SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EehhhhcCC-------CHHHHHHHHHHHcCcCcEEEEEECC
Confidence            999998886       6677889999999999999998754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.78  E-value=7.8e-19  Score=143.86  Aligned_cols=112  Identities=22%  Similarity=0.285  Sum_probs=94.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc--cCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~--~~~~fD~v~~~~~  174 (278)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++++...+.. ++.+.++|+....  ..++||+|++..+
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            467899999999999999999887778999999999999999998876543 6999999997654  4678999999988


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++++.   ........+++++.++|||||.++++.++.
T Consensus       103 l~~~~---~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_         103 FHYAF---STSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             eeecC---CCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            87663   224466788899999999999999988763

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.76  E-value=6.9e-19  Score=138.51  Aligned_cols=110  Identities=16%  Similarity=0.146  Sum_probs=91.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC------------cceEEEEccccCCcc--
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------------SCIKFLVDDVLDTKL--  162 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~------------~~~~~~~~d~~~~~~--  162 (278)
                      +.++.+|||+|||+|..+..|+++|+ +|+|+|+|+.+++.|+++++..+.            ..+.+..+|+.+...  
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~   96 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   96 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence            46788999999999999999999997 899999999999999998865422            236788899888764  


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ...||+|++..++.++.     ......+++++.++|||||.+++.....
T Consensus        97 ~~~~D~i~~~~~l~~l~-----~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          97 IGHCAAFYDRAAMIALP-----ADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             HHSEEEEEEESCGGGSC-----HHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             ccceeEEEEEeeeEecc-----hhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            46899999988887764     4466788899999999999988875443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=3.9e-18  Score=133.19  Aligned_cols=107  Identities=16%  Similarity=0.233  Sum_probs=91.3

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCccEEEeC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDK  172 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~v~~~  172 (278)
                      ..+.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.|++|++.+++. +++++++|+.+... ...||+|++.
T Consensus        29 l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~  107 (186)
T d1l3ia_          29 AEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVG  107 (186)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEES
T ss_pred             cCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEe
Confidence            466789999999999999999999875 58999999999999999999999984 79999999887654 4789999988


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +...          ....+++.+.+.|||||++++.....
T Consensus       108 ~~~~----------~~~~~~~~~~~~LkpgG~lvi~~~~~  137 (186)
T d1l3ia_         108 GSGG----------ELQEILRIIKDKLKPGGRIIVTAILL  137 (186)
T ss_dssp             CCTT----------CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             Cccc----------cchHHHHHHHHHhCcCCEEEEEeecc
Confidence            7643          33456799999999999998876543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=2.9e-18  Score=139.42  Aligned_cols=101  Identities=23%  Similarity=0.358  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeC-Ccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDK-GTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~-~~~  175 (278)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|+++..      ..++.+|+.+.+. +++||+|++. .++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~------~~~~~~~~~~l~~~~~~fD~ii~~~~~~  113 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV------KNVVEAKAEDLPFPSGAFEAVLALGDVL  113 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC------SCEEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred             CCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc------cccccccccccccccccccceeeecchh
Confidence            4567999999999999999999975 89999999999999998642      2356889988765 5899999985 577


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +++.       +...+++++.++|||||.+++..++.
T Consensus       114 ~~~~-------d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         114 SYVE-------NKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             HHCS-------CHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             hhhh-------hHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            7775       66678899999999999999987653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.74  E-value=1.2e-17  Score=134.44  Aligned_cols=112  Identities=17%  Similarity=0.235  Sum_probs=91.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      .+++.+|||+|||+|..+..+++.   +..+|+|+|+|+.|++.|+++++..+.. ++.+..+|..+.+ ...+|++++.
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~-~~~~d~i~~~  115 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IKNASMVILN  115 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-CCSEEEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-cccceeeEEe
Confidence            467889999999999999999874   2348999999999999999998776543 4788888887653 4678999998


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ..++++.     ..+...+++++.++|||||.+++.+...+.
T Consensus       116 ~~l~~~~-----~~d~~~~l~~i~~~LkpgG~li~~~~~~~~  152 (225)
T d1im8a_         116 FTLQFLP-----PEDRIALLTKIYEGLNPNGVLVLSEKFRFE  152 (225)
T ss_dssp             SCGGGSC-----GGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred             eeccccC-----hhhHHHHHHHHHHhCCCCceeecccccccc
Confidence            7776553     457778999999999999999998755433

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.73  E-value=6.5e-18  Score=138.28  Aligned_cols=106  Identities=13%  Similarity=0.210  Sum_probs=91.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||+|||+|.++..++..++.+|+++|+|+.+++.|++++...  ++++++++|+.++.+ +++||+|++..+++
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~  169 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccCCCccceEEeecccc
Confidence            456799999999999999988765568999999999999999987644  468999999998875 57899999999998


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      |+.     ..+...++++++++|+|||.+++.+.
T Consensus       170 hl~-----d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         170 YLT-----DADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccc-----hhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            875     33567889999999999999999764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=2e-17  Score=137.33  Aligned_cols=116  Identities=11%  Similarity=0.210  Sum_probs=96.8

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDK  172 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~  172 (278)
                      .++.+|.+|||||||.|.++..+++. |+ +|+|+++|+..++.++++....++.+ +.+...|...  .+++||.|++.
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--~~~~fD~i~si  133 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--FDEPVDRIVSL  133 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--CCCCCSEEEEE
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--cccccceEeec
Confidence            45789999999999999999999876 75 89999999999999999999988765 7888888753  46889999999


Q ss_pred             CccceeccCC--CChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          173 GTLDAIGLHP--DGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       173 ~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +.++|+.-..  ........+++++.++|||||++++.+...+
T Consensus       134 e~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~  176 (291)
T d1kpia_         134 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  176 (291)
T ss_dssp             SCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred             hhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence            9999885211  1234577899999999999999999875443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=3.3e-18  Score=135.93  Aligned_cols=98  Identities=18%  Similarity=0.255  Sum_probs=84.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~~  176 (278)
                      .++.+|||||||+|.++..+.     +++|+|+|+.+++.|+++       ++.++++|+.+.+. +++||+|++..+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------ccccccccccccccccccccccccccccc
Confidence            456689999999999887773     468999999999999873       58899999998865 58899999999999


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ++.       +...+++++.++|+|||.+++..++...
T Consensus       103 h~~-------d~~~~l~~~~~~L~pgG~l~i~~~~~~~  133 (208)
T d1vlma_         103 FVD-------DPERALKEAYRILKKGGYLIVGIVDRES  133 (208)
T ss_dssp             GSS-------CHHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred             ccc-------ccccchhhhhhcCCCCceEEEEecCCcc
Confidence            886       6678889999999999999999877654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=1.3e-17  Score=138.08  Aligned_cols=107  Identities=12%  Similarity=0.233  Sum_probs=92.6

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      .++++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|+++++..++.. +.+...|..+  ++++||.|++..
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~--~~~~fD~i~si~  125 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--FAEPVDRIVSIE  125 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--CCCCCSEEEEES
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh--hccchhhhhHhh
Confidence            5678999999999999999999887 65 89999999999999999999888754 7777778765  357899999999


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++|+.     ......+++++.++|||||++++.+.
T Consensus       126 ~~eh~~-----~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         126 AFEHFG-----HENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             CGGGTC-----GGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             HHHHhh-----hhhHHHHHHHHHhccCCCceEEEEEe
Confidence            998885     33567889999999999999999753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=2.3e-17  Score=136.53  Aligned_cols=110  Identities=14%  Similarity=0.286  Sum_probs=94.5

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEe
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMD  171 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~  171 (278)
                      ..++.+|.+|||||||.|.+++.+++. |+ +|+|+++|+..++.|+++.+..++. ++++..+|..+.  +++||.|++
T Consensus        57 ~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~fD~i~s  133 (285)
T d1kpga_          57 KLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEPVDRIVS  133 (285)
T ss_dssp             TTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--CCCCSEEEE
T ss_pred             HcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--cccccceee
Confidence            345689999999999999999998887 75 9999999999999999998887764 499999998764  578999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .+.++|+.     ......+++++.++|||||++++.+..
T Consensus       134 i~~~eh~~-----~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         134 IGAFEHFG-----HERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             ESCGGGTC-----TTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ehhhhhcC-----chhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            99999874     235567889999999999999987643

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=5.1e-17  Score=135.71  Aligned_cols=113  Identities=22%  Similarity=0.260  Sum_probs=88.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc----ceEEEEccccCC----ccCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS----CIKFLVDDVLDT----KLERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~----~~~~~~~d~~~~----~~~~~fD~v  169 (278)
                      .++.+|||+|||+|.++..|++.|+ +|+|+|+|+.|++.|+++....+..    ...+...++...    +..++||+|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence            3567999999999999999999986 8999999999999999988766542    234555555432    345789999


Q ss_pred             EeC-CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          170 MDK-GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       170 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++. .++.|+.-......+...+++++.++|||||+|++...+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            975 477776533344567788999999999999999998765

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=7.1e-17  Score=128.44  Aligned_cols=102  Identities=19%  Similarity=0.266  Sum_probs=88.2

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEe
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMD  171 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~  171 (278)
                      ..+.++.+|||||||+|.++..+++. + ..+|+++|+++.+++.|+++++..++.++.++++|..+.. ..++||+|++
T Consensus        71 l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~  150 (213)
T d1dl5a1          71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV  150 (213)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             hhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhh
Confidence            45788999999999999999999876 3 2379999999999999999999999889999999987754 4678999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ...+++++             +.+.+.|||||++++..
T Consensus       151 ~~~~~~~p-------------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         151 TVGVDEVP-------------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CSBBSCCC-------------HHHHHHEEEEEEEEEEB
T ss_pred             hccHHHhH-------------HHHHHhcCCCcEEEEEE
Confidence            98887765             56788899999998854

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.2e-16  Score=131.67  Aligned_cols=98  Identities=19%  Similarity=0.272  Sum_probs=82.8

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|+++.     +++.+.++|+.+.++ +++||+|++..+.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~  157 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP  157 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhccCCCCCEEEEeecCCH
Confidence            456799999999999999999884 348999999999999998764     478999999999875 6889999986554


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      .++              +++.|+|||||.+++.+++...
T Consensus       158 ~~~--------------~e~~rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         158 CKA--------------EELARVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             CCH--------------HHHHHHEEEEEEEEEEEECTTT
T ss_pred             HHH--------------HHHHHHhCCCcEEEEEeeCCcc
Confidence            332              6899999999999999987643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=129.34  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc----------------------------
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC----------------------------  149 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~----------------------------  149 (278)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++++..+...                            
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            4677999999999999888887766689999999999999999987553210                            


Q ss_pred             -e-EEEEccccC-----CccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          150 -I-KFLVDDVLD-----TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       150 -~-~~~~~d~~~-----~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                       + .....+...     ....++||+|++..+++++.   ....+...+++++.++|||||.+++.+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~---~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC---CSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhc---ccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence             0 112222221     11357899999999988774   233466788899999999999999987543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=3.7e-16  Score=126.47  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhC-CCcceEEEEccccCCccCCCccEEEe
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKLERQFQLVMD  171 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~~~~~~fD~v~~  171 (278)
                      ..+.||.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+++++.. +..++++..+|+.+...++.||.|+.
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~l  160 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIA  160 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEE
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeee
Confidence            45689999999999999999999975 3 348999999999999999999875 44679999999998767788999986


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +.+            +...++.++.++|||||++++..++.
T Consensus       161 d~p------------~p~~~l~~~~~~LKpGG~lv~~~P~i  189 (250)
T d1yb2a1         161 DIP------------DPWNHVQKIASMMKPGSVATFYLPNF  189 (250)
T ss_dssp             CCS------------CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             cCC------------chHHHHHHHHHhcCCCceEEEEeCCc
Confidence            422            22345689999999999999877654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.64  E-value=3.3e-16  Score=117.96  Aligned_cols=110  Identities=18%  Similarity=0.167  Sum_probs=89.0

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc--cCCCccEEE
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      +....++++|||+|||+|.+++.++.+|+++|+++|.++.+++.++++++.+++.+ ++++++|+....  ..++||+|+
T Consensus         9 l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1           9 IGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             HCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             HHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeE
Confidence            33345788999999999999999999998899999999999999999999998865 999999998742  367899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHH--HhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSV--SKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~  211 (278)
                      .++++..-        .....+..+  .++|+|||.+++....
T Consensus        89 ~DPPy~~~--------~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          89 LDPPYAKE--------TIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             ECCSSHHH--------HHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             echhhccc--------hHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            99887422        333344444  3579999999987543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=1e-15  Score=125.13  Aligned_cols=159  Identities=18%  Similarity=0.160  Sum_probs=114.3

Q ss_pred             cccCcchhhHHh---hhhcccccccccCcccccccccccchhhhcc---ccCCCCeEEEEecCCCHHHHHHhhCCCCcEE
Q 023703           53 VWFGADVMDVVA---SWTKSLCISISQGHMLNHVEDLKSEPVEEND---KYLSSWSVLDIGTGNGLLLQELSKQGFSDLT  126 (278)
Q Consensus        53 ~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~  126 (278)
                      |--++|.+++++   +|..++  .+.++.+.|+++ ++. ++..+.   ...+..+|+|+|||+|..+..++..+..+|+
T Consensus        62 R~~~~Pl~YI~g~~~F~~~~f--~v~~~vlIPRpe-TE~-lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~  137 (271)
T d1nv8a_          62 RASGYPLHYILGEKEFMGLSF--LVEEGVFVPRPE-TEE-LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVF  137 (271)
T ss_dssp             HHTTCCHHHHHTEEEETTEEE--ECCTTSCCCCTT-HHH-HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEE
T ss_pred             hhCCCChhhhcCcEEEeeeEE--EEecCccCchhh-hhh-hhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceee
Confidence            345778889888   455544  799999999874 222 333221   1233468999999999999999877656999


Q ss_pred             EEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc--CCCccEEEeCCccceec----------------cCCCChhh
Q 023703          127 GVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL--ERQFQLVMDKGTLDAIG----------------LHPDGPLK  187 (278)
Q Consensus       127 ~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~----------------~~~~~~~~  187 (278)
                      ++|+|+.+++.|++|++.+++.+ +.+..+|+.+...  .++||+|++|++|-.-.                .+.++...
T Consensus       138 a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~  217 (271)
T d1nv8a_         138 ATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDF  217 (271)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHH
T ss_pred             echhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHH
Confidence            99999999999999999998865 7788899887543  37899999999873110                11222333


Q ss_pred             HHHHHHHHHhcccCCcEEEEEecCCChHHHH
Q 023703          188 RIMYWDSVSKLVAPGGLLVITSCNSTKDELV  218 (278)
Q Consensus       188 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  218 (278)
                      ...+   +.+.|+|||.+++.......+...
T Consensus       218 ~r~i---~~~~L~~~G~l~~Eig~~Q~~~v~  245 (271)
T d1nv8a_         218 YREF---FGRYDTSGKIVLMEIGEDQVEELK  245 (271)
T ss_dssp             HHHH---HHHCCCTTCEEEEECCTTCHHHHT
T ss_pred             HHHH---HHHhcCCCCEEEEEECHHHHHHHH
Confidence            3333   567899999999988766555443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.63  E-value=8.9e-16  Score=125.42  Aligned_cols=109  Identities=17%  Similarity=0.314  Sum_probs=89.8

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ..+.++|||||||+|.++..++++ +..+++++|+ +.+++.++++....++. +++++.+|+.+. .+.+||+|++..+
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~~~~D~v~~~~v  155 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPRKADAIILSFV  155 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSSCEEEEEEESC
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-cccchhheeeccc
Confidence            345679999999999999999987 3358999998 67899999999888764 599999999764 3467999999888


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++++.     ..+...+|++++++|||||++++.+...
T Consensus       156 lh~~~-----d~~~~~~L~~~~~~LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         156 LLNWP-----DHDAVRILTRCAEALEPGGRILIHERDD  188 (253)
T ss_dssp             GGGSC-----HHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             cccCC-----chhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence            87653     4456788999999999999999986543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.5e-16  Score=123.57  Aligned_cols=112  Identities=17%  Similarity=0.298  Sum_probs=90.6

Q ss_pred             cchhhhc-cccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCC-----cceEEEEccccC
Q 023703           88 SEPVEEN-DKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-----SCIKFLVDDVLD  159 (278)
Q Consensus        88 ~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~-----~~~~~~~~d~~~  159 (278)
                      ..+++.+ ....++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++++..++     .++.++.+|...
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            3444444 36688999999999999999888875 3 34899999999999999999887554     358899999877


Q ss_pred             Ccc-CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          160 TKL-ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       160 ~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ..+ .++||.|++....++++             +.+.+.|||||++++.....
T Consensus       144 ~~~~~~~fD~I~~~~~~~~ip-------------~~l~~~LkpGG~LV~pv~~~  184 (224)
T d1i1na_         144 GYAEEAPYDAIHVGAAAPVVP-------------QALIDQLKPGGRLILPVGPA  184 (224)
T ss_dssp             CCGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEESCT
T ss_pred             ccchhhhhhhhhhhcchhhcC-------------HHHHhhcCCCcEEEEEEccC
Confidence            544 57899999998887765             66889999999999976443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-16  Score=126.52  Aligned_cols=109  Identities=13%  Similarity=0.118  Sum_probs=83.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~  174 (278)
                      .++.+|||||||+|..+..+++.+..+|+++|+|+.+++.|++++...+ .++.++..|+....   .+++||.|+....
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-cccccccccccccccccccccccceeeccc
Confidence            4678999999999999999998855689999999999999999988765 35778888765532   3578999986543


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ........  ..+...+++++.++|||||+|++.+
T Consensus       131 ~~~~~~~~--~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         131 PLSEETWH--THQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CCBGGGTT--THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccccccc--ccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            32221111  2256678899999999999998743

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=5.7e-16  Score=130.36  Aligned_cols=123  Identities=22%  Similarity=0.225  Sum_probs=96.3

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEEe
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMD  171 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~~  171 (278)
                      ..++++|||+|||+|.++..++.. .++|+++|+|+.+++.|++|++.+|+++++++++|+.+..     ..++||+|++
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            346889999999999999998864 4699999999999999999999999988999999997742     2478999999


Q ss_pred             CCccceeccCCCCh----hhHHHHHHHHHhcccCCcEEEEEecCC--ChHHHHHHHh
Q 023703          172 KGTLDAIGLHPDGP----LKRIMYWDSVSKLVAPGGLLVITSCNS--TKDELVHEVS  222 (278)
Q Consensus       172 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~  222 (278)
                      +++....  .....    .....++..+.++|+|||.+++++++.  +.+++...+.
T Consensus       222 DpP~~~~--~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~  276 (318)
T d1wxxa2         222 DPPAFAK--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVA  276 (318)
T ss_dssp             CCCCSCC--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             cCCcccc--chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHH
Confidence            8875322  11111    233467789999999999999998875  3344444443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=1.7e-15  Score=119.26  Aligned_cols=109  Identities=16%  Similarity=0.148  Sum_probs=85.4

Q ss_pred             CeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCccc
Q 023703          101 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGTLD  176 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~~~  176 (278)
                      ..|||||||+|.++..+|.. +...++|+|+++.++..|.++.+..+++|+.++++|+....   +++.+|.|+...+..
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            37999999999999999987 44589999999999999999999999999999999997653   367899888654432


Q ss_pred             eecc-CCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          177 AIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       177 ~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +... |.....-...+++.+.++|||||.|++.+
T Consensus       111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            2210 00000012478899999999999999986

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=1.4e-15  Score=121.93  Aligned_cols=105  Identities=9%  Similarity=0.051  Sum_probs=82.8

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDK  172 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~  172 (278)
                      .+.++.+|||+|||+|..+..+++.+ ...|+|+|+|+.+++.+++++...  +++..+..|......  +..+|++++.
T Consensus        71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeEEee
Confidence            45789999999999999999999873 348999999999999999987765  477888888887642  3556665553


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..+.+.       .+...++.++.+.|||||.+++..
T Consensus       149 ~~~~~~-------~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         149 EDVAQP-------NQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             ECCCST-------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccch-------HHHHHHHHHHHHhcccCceEEEEe
Confidence            333222       266777899999999999998874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=3.1e-15  Score=118.34  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-C---CCccEEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-E---RQFQLVM  170 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~---~~fD~v~  170 (278)
                      .++|+.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.|+++++..  +++.++..|...... .   ..+|+++
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCccccccccceEEEEE
Confidence            4578999999999999999999986 4458999999999999999998876  489999999987643 2   3455554


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..  +.    +   ..+...++.++.++|||||.+++..
T Consensus       131 ~~--~~----~---~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         131 QD--IA----Q---KNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EC--CC----S---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ec--cc----C---hhhHHHHHHHHHHHhccCCeEEEEE
Confidence            32  11    1   2266678899999999999998874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.59  E-value=3.3e-15  Score=118.96  Aligned_cols=101  Identities=20%  Similarity=0.212  Sum_probs=85.9

Q ss_pred             cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-cCCCccEEEeCC
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKG  173 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~  173 (278)
                      ..+.++.+|||||||+|.++..++..+ .+|+++|+++.+++.|++++...  .++.++.+|..... ..++||.|++.+
T Consensus        66 L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g~~~~~pfD~Iiv~~  142 (224)
T d1vbfa_          66 LDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYEEEKPYDRVVVWA  142 (224)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             hhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc--cccccccCchhhcchhhhhHHHHHhhc
Confidence            456789999999999999999999885 58999999999999999987654  58999999987643 458899999988


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ...+++             ..+.+.|||||++++....
T Consensus       143 a~~~ip-------------~~l~~qLk~GGrLV~pvg~  167 (224)
T d1vbfa_         143 TAPTLL-------------CKPYEQLKEGGIMILPIGV  167 (224)
T ss_dssp             BBSSCC-------------HHHHHTEEEEEEEEEEECS
T ss_pred             chhhhh-------------HHHHHhcCCCCEEEEEEcC
Confidence            887765             6678899999999986543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=1.9e-15  Score=127.55  Aligned_cols=123  Identities=23%  Similarity=0.248  Sum_probs=97.2

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc-----cCCCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-----LERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~-----~~~~fD~v~  170 (278)
                      ..++.+|||+|||+|.+++.++..|+.+|+++|+|+.+++.+++|++.+|+. +++++++|+.+..     ...+||+|+
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            4678999999999999999999998779999999999999999999999985 5899999998642     247899999


Q ss_pred             eCCccceeccCCCC----hhhHHHHHHHHHhcccCCcEEEEEecCCCh--HHHHHHH
Q 023703          171 DKGTLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNSTK--DELVHEV  221 (278)
Q Consensus       171 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~  221 (278)
                      ++++...-  +...    ......++..+.++|+|||++++++++...  +++.+.+
T Consensus       223 ~DpP~~~~--~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v  277 (324)
T d2as0a2         223 LDPPAFVQ--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMI  277 (324)
T ss_dssp             ECCCCSCS--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             cCCccccC--CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHH
Confidence            98875321  1111    123356778899999999999999876643  4444443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.59  E-value=1.9e-15  Score=125.32  Aligned_cols=137  Identities=15%  Similarity=0.134  Sum_probs=100.8

Q ss_pred             cccccCcccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--c
Q 023703           72 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--C  149 (278)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~  149 (278)
                      ....+|.++++... ...+...+....++.+|||++||+|.+++.++..|+ +|+++|.|+.+++.|++|++.+++.  +
T Consensus       106 ~~~~tG~f~dqr~n-r~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~  183 (309)
T d2igta1         106 AFRHVGVFPEQIVH-WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAP  183 (309)
T ss_dssp             SSSCCSCCGGGHHH-HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSC
T ss_pred             CCCccccccchhHH-HHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCc
Confidence            34556666665532 222333455566788999999999999999999886 8999999999999999999998875  4


Q ss_pred             eEEEEccccCCc-----cCCCccEEEeCCccceeccCCCC-----hhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          150 IKFLVDDVLDTK-----LERQFQLVMDKGTLDAIGLHPDG-----PLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       150 ~~~~~~d~~~~~-----~~~~fD~v~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ++++++|+.+..     ...+||+|+++++.-..  ....     ......++..+.++|+|||.+++.+++.
T Consensus       184 ~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~--~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         184 IRWICEDAMKFIQREERRGSTYDIILTDPPKFGR--GTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEE--CTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             EEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccc--cccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence            899999998752     24789999998874222  1111     1233456678889999999866665443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.59  E-value=6.5e-15  Score=116.48  Aligned_cols=104  Identities=15%  Similarity=0.284  Sum_probs=90.9

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-ccCCCccEEEe
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KLERQFQLVMD  171 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~  171 (278)
                      ...+.++.+|||||||+|..+..++.. | .+|+++|.++..++.|+++++..++.|+.++++|.... +..++||.|+.
T Consensus        73 ~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv  151 (215)
T d1jg1a_          73 IANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIV  151 (215)
T ss_dssp             HHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             hhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEe
Confidence            445788999999999999999999876 5 47999999999999999999999999999999999875 44689999999


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .+....++             ..+.+.|+|||++++....
T Consensus       152 ~~a~~~ip-------------~~l~~qL~~gGrLv~pv~~  178 (215)
T d1jg1a_         152 TAGAPKIP-------------EPLIEQLKIGGKLIIPVGS  178 (215)
T ss_dssp             CSBBSSCC-------------HHHHHTEEEEEEEEEEECS
T ss_pred             ecccccCC-------------HHHHHhcCCCCEEEEEEcc
Confidence            98888776             6678889999999986543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=2.9e-15  Score=121.95  Aligned_cols=110  Identities=20%  Similarity=0.291  Sum_probs=88.6

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhC---CCcceEEEEccccCCcc-CCCc
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD---GFSCIKFLVDDVLDTKL-ERQF  166 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~---~~~~~~~~~~d~~~~~~-~~~f  166 (278)
                      ....+.|+.+|||+|||+|.++..|++. + ..+|+++|+++.+++.|+++++..   ...++.+.++|+.+... ++.|
T Consensus        90 ~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~f  169 (264)
T d1i9ga_          90 HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSV  169 (264)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCE
T ss_pred             HHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCc
Confidence            3456689999999999999999999987 3 248999999999999999998764   23579999999987654 6889


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      |.|+.+     ++       +...++.++.++|||||++++..++-++
T Consensus       170 DaV~ld-----lp-------~P~~~l~~~~~~LkpGG~lv~~~P~i~Q  205 (264)
T d1i9ga_         170 DRAVLD-----ML-------APWEVLDAVSRLLVAGGVLMVYVATVTQ  205 (264)
T ss_dssp             EEEEEE-----SS-------CGGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred             ceEEEe-----cC-------CHHHHHHHHHhccCCCCEEEEEeCccCh
Confidence            999863     22       3334558999999999999888766543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.58  E-value=2.7e-15  Score=125.84  Aligned_cols=129  Identities=12%  Similarity=0.090  Sum_probs=98.9

Q ss_pred             ccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCc-----cCCCc
Q 023703           94 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LERQF  166 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~-----~~~~f  166 (278)
                      +....++.+|||++||+|.+++.++..|+.+|+++|+|+.+++.+++|++.+++.  +++++++|+.+..     ..++|
T Consensus       139 ~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         139 INGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             HHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence            3455678999999999999999999888778999999999999999999999874  5899999998752     24689


Q ss_pred             cEEEeCCccceec-cC-CCChhhHHHHHHHHHhcccCCcEEEEEecCC--ChHHHHHHHh
Q 023703          167 QLVMDKGTLDAIG-LH-PDGPLKRIMYWDSVSKLVAPGGLLVITSCNS--TKDELVHEVS  222 (278)
Q Consensus       167 D~v~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~  222 (278)
                      |+|+++++.-.-. -. .........+++.+.++|+|||.+++++++.  +.+++...+.
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~  278 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIE  278 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHH
Confidence            9999987732110 01 1112345578899999999999999998764  3444444444

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.58  E-value=1.4e-14  Score=113.95  Aligned_cols=111  Identities=17%  Similarity=0.200  Sum_probs=85.3

Q ss_pred             CeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeCCccc
Q 023703          101 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDKGTLD  176 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~~~~~  176 (278)
                      ..|||||||+|.++..+|.. +...++|+|+++.++..|.+++...+++|+.++.+|+....   ++.++|.|+.+.+-.
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP  112 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP  112 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence            37999999999999999987 44589999999999999999999999999999999998754   357788887643321


Q ss_pred             eecc-CCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          177 AIGL-HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       177 ~~~~-~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +... |.....-...+++.+.++|||||.+++.+-.
T Consensus       113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~  148 (204)
T d1yzha1         113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  148 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence            1100 0000011257889999999999999987643

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.8e-15  Score=124.20  Aligned_cols=110  Identities=19%  Similarity=0.221  Sum_probs=82.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-----------------------------
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----------------------------  148 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-----------------------------  148 (278)
                      .++.+|||+|||+|.++...+.....+|+|+|+|+.+++.+++++......                             
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            467899999999998876666554568999999999999999887543210                             


Q ss_pred             -ceEEEEccccCCc-------cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          149 -CIKFLVDDVLDTK-------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       149 -~~~~~~~d~~~~~-------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                       .......|+....       .+++||+|++..+++++.   .+..+...+++++.++|||||.|++...
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~---~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS---PDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc---cCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence             1234556665432       135799999998888774   2344677888999999999999998653

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.9e-15  Score=117.20  Aligned_cols=124  Identities=9%  Similarity=-0.026  Sum_probs=94.9

Q ss_pred             ccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEcccc
Q 023703           79 MLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL  158 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~  158 (278)
                      ..|+.+.....+...+.....+.+|||++||+|.+++.++.+|+.+|+.+|.++.+++.+++|++..+..++.++..|+.
T Consensus        23 ~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~  102 (183)
T d2fpoa1          23 LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM  102 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             cCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccc
Confidence            34444444455555555556788999999999999999999998899999999999999999999888878999999988


Q ss_pred             CCc--cCCCccEEEeCCccceeccCCCChhhHHHHHHHHH--hcccCCcEEEEEec
Q 023703          159 DTK--LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSC  210 (278)
Q Consensus       159 ~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~  210 (278)
                      +..  ...+||+|+++++|..-        .....+..+.  .+|+|+|.+++...
T Consensus       103 ~~l~~~~~~fDlIf~DPPY~~~--------~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         103 SFLAQKGTPHNIVFVDPPFRRG--------LLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             HHHSSCCCCEEEEEECCSSSTT--------THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ccccccccccCEEEEcCccccc--------hHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            653  35789999999997521        2333344444  46999999998653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=2e-15  Score=123.27  Aligned_cols=103  Identities=10%  Similarity=0.026  Sum_probs=87.9

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ...++.+|||+|||+|.+++.++.+|.++|+++|+||.+++.+++|++.+++.+ ++++++|+.+....+.||.|+++.+
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p  183 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  183 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             hcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence            346889999999999999999998876699999999999999999999999876 9999999999877888999987654


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..           ...++..+.+.|+|||.+.+..
T Consensus       184 ~~-----------~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         184 VR-----------THEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             SS-----------GGGGHHHHHHHEEEEEEEEEEE
T ss_pred             Cc-----------hHHHHHHHHhhcCCCCEEEEEe
Confidence            32           1234578889999999986643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.57  E-value=5.6e-15  Score=114.27  Aligned_cols=124  Identities=14%  Similarity=0.116  Sum_probs=98.2

Q ss_pred             ccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccc
Q 023703           79 MLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDV  157 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~  157 (278)
                      ..|+.+.....+...+....++.+|||++||+|.+++.++.+|+.+|+++|.++.+++.+++|++..+.. +++++++|+
T Consensus        21 ~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~  100 (182)
T d2fhpa1          21 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA  100 (182)
T ss_dssp             SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Confidence            4455555555666666666788999999999999999999999889999999999999999999888765 599999999


Q ss_pred             cCCc-----cCCCccEEEeCCccceeccCCCChhhHHHHHHHHH--hcccCCcEEEEEec
Q 023703          158 LDTK-----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSC  210 (278)
Q Consensus       158 ~~~~-----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~  210 (278)
                      .+.-     ...+||+|+.+++|..-        .....+..+.  .+|+|+|.+++...
T Consensus       101 ~~~l~~~~~~~~~fDlIflDPPY~~~--------~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         101 NRALEQFYEEKLQFDLVLLDPPYAKQ--------EIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCGGGC--------CHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhhhhhhcccCCCcceEEechhhhhh--------HHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            7642     24589999999998521        3334455554  47999999988754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=5.1e-15  Score=121.11  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=87.9

Q ss_pred             hhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccE
Q 023703           92 EENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQL  168 (278)
Q Consensus        92 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~  168 (278)
                      -....+.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+++++..++. ++.+...|+........||.
T Consensus        96 i~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~  175 (266)
T d1o54a_          96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDA  175 (266)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEE
T ss_pred             HHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceee
Confidence            33456789999999999999999999876 2 248999999999999999999998874 58888999866555677888


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      |+..     ++       +...+++++.++|||||++++..++.
T Consensus       176 V~~d-----~p-------~p~~~l~~~~~~LKpGG~lv~~~P~~  207 (266)
T d1o54a_         176 LFLD-----VP-------DPWNYIDKCWEALKGGGRFATVCPTT  207 (266)
T ss_dssp             EEEC-----CS-------CGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             eEec-----CC-------CHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence            8753     21       33345699999999999999877653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.1e-15  Score=123.20  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=84.0

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC------C-CCcEEEEeCChHHHHHHHHHhhhCC-Ccce--EEEEccccC-------
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ------G-FSDLTGVDYSEDAINLAQSLANRDG-FSCI--KFLVDDVLD-------  159 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~------~-~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~--~~~~~d~~~-------  159 (278)
                      .++..+|||||||+|.++..++..      + ...++|+|+|+.+++.++++++... +.++  .+...++.+       
T Consensus        38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            345558999999999998877653      1 1268999999999999999876542 2334  344444432       


Q ss_pred             CccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCCh
Q 023703          160 TKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTK  214 (278)
Q Consensus       160 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  214 (278)
                      ...+++||+|++..+++++.       +...+++++.++|+|||.+++...+...
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~-------d~~~~l~~l~~~LkpgG~l~i~~~~~~~  165 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVK-------DIPATLKFFHSLLGTNAKMLIIVVSGSS  165 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCS-------CHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred             cCCCCceeEEEEccceecCC-------CHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence            12368899999999998886       6778889999999999999998766543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.55  E-value=1.6e-14  Score=117.94  Aligned_cols=106  Identities=19%  Similarity=0.217  Sum_probs=88.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCccCCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ....+|||||||+|.++..++++ +..+++++|+ |.+++.++++++..++. ++.+..+|..+. .+.+||+|++..++
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~p~~~D~v~~~~vL  157 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LPVTADVVLLSFVL  157 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCCEEEEEEESCG
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-ccccchhhhccccc
Confidence            45579999999999999999987 3348999997 78899999999888764 499999999864 34569999998888


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++.     ..+...+|++++++|||||++++.+.
T Consensus       158 h~~~-----d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         158 LNWS-----DEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             GGSC-----HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccC-----cHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            7653     44667889999999999999999864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=2e-14  Score=121.69  Aligned_cols=104  Identities=25%  Similarity=0.323  Sum_probs=85.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      .++++|||||||+|.++..+++.|+.+|+++|.|+ +++.|+++.+.++.. ++.++++|+.+... +++||+|++....
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            46889999999999999999999988999999997 568888888888765 49999999999875 5789999987665


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEE
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLV  206 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  206 (278)
                      ..+.    .......++..+.++|||||+++
T Consensus       116 ~~~~----~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLL----YESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBS----TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeec----cchhHHHHHHHHHhccCCCeEEE
Confidence            4332    12245556688889999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.7e-14  Score=121.42  Aligned_cols=105  Identities=18%  Similarity=0.275  Sum_probs=84.4

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      .++++|||||||+|.++..+++.|+.+|+++|.|+.+ ..++++.+.+++.+ +.++++|+.+... .++||+|++....
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            3678999999999999999999987789999999865 66777777777654 9999999999875 4789999986554


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                      +.+.    .......++..+.++|||||.++-
T Consensus       111 ~~l~----~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         111 YCLF----YESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBT----BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeec----cHHHHHHHHHHHHhcCCCCeEEEe
Confidence            3332    222456677899999999999874

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-14  Score=120.00  Aligned_cols=106  Identities=19%  Similarity=0.194  Sum_probs=82.1

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-CCCccEEEeCCc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-ERQFQLVMDKGT  174 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~v~~~~~  174 (278)
                      ..++++|||||||+|.+++.+++.|+.+|+++|.|+.+...+ +....++. .++.++++|+.+... .++||+|++...
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~-~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHH-HHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            357889999999999999999999888999999999987544 44444444 469999999999875 579999998655


Q ss_pred             cceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          175 LDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                      .+.+.    .......++....++|||||+++.
T Consensus       112 ~~~~~----~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         112 GYFLL----FESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             BTTBT----TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eeecc----cccccHHHHHHHHhcCCCCcEEec
Confidence            43332    222445566777889999999874

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=8.9e-14  Score=110.89  Aligned_cols=103  Identities=17%  Similarity=0.293  Sum_probs=82.3

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v  169 (278)
                      .+.||.+|||+|||+|.++..+++. |. .+|+|+|+|+.+++.++++++..  .++..+..|.....    ....+|+|
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~~~~~~~~vD~i  147 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCcccccccccceEEE
Confidence            4578999999999999999999987 42 48999999999999999988765  46778888886643    13668888


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +..-.         .+.+...++.++.+.|||||.++++.
T Consensus       148 ~~d~~---------~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         148 FEDVA---------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EECCC---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcc---------ccchHHHHHHHHHHhcccCCeEEEEE
Confidence            76321         12366677899999999999999874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=6.1e-14  Score=109.04  Aligned_cols=74  Identities=27%  Similarity=0.416  Sum_probs=63.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ..|++|||+|||+|.+++.++..|+.+|+|+|+++.+++.|++|.     .++.++++|+.+.  +++||+|++|++|..
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l--~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEI--SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGC--CCCEEEEEECCCC--
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhc--CCcceEEEeCcccch
Confidence            468899999999999999999988778999999999999999986     4688999999764  578999999999854


Q ss_pred             e
Q 023703          178 I  178 (278)
Q Consensus       178 ~  178 (278)
                      .
T Consensus       120 ~  120 (197)
T d1ne2a_         120 V  120 (197)
T ss_dssp             -
T ss_pred             h
Confidence            3

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=1.7e-14  Score=110.48  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=82.2

Q ss_pred             cchhhhcc-ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-----c
Q 023703           88 SEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----K  161 (278)
Q Consensus        88 ~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~  161 (278)
                      ..+...+. ...++.+|||+|||+|.+++.++.+|+ +++++|.|+.+++.+++|++.+++.+ ++...+....     .
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~  106 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKA  106 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHH
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccc
Confidence            33444443 446788999999999999999999986 79999999999999999999988743 4444444321     1


Q ss_pred             cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..++||+|+++++|..-     -......+++  ..+|+|||++++...
T Consensus       107 ~~~~fD~If~DPPY~~~-----~~~~l~~l~~--~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         107 QGERFTVAFMAPPYAMD-----LAALFGELLA--SGLVEAGGLYVLQHP  148 (171)
T ss_dssp             TTCCEEEEEECCCTTSC-----TTHHHHHHHH--HTCEEEEEEEEEEEE
T ss_pred             cCCccceeEEccccccC-----HHHHHHHHHH--cCCcCCCeEEEEEec
Confidence            34789999999987531     1112222222  358999999988754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.1e-14  Score=118.58  Aligned_cols=109  Identities=19%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             hccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCC-----------CcceEEEEccccC
Q 023703           93 ENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDG-----------FSCIKFLVDDVLD  159 (278)
Q Consensus        93 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~-----------~~~~~~~~~d~~~  159 (278)
                      ....+.||.+|||+|||+|.++..|++. | ..+|+++|+++.+++.|++|++..+           ..++.+.++|+.+
T Consensus        92 ~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~  171 (324)
T d2b25a1          92 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG  171 (324)
T ss_dssp             HHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred             HHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh
Confidence            3356789999999999999999999986 3 2389999999999999999987532           2469999999987


Q ss_pred             Ccc---CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          160 TKL---ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       160 ~~~---~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      ...   +..||.|+.+.         +.+   ..++.++.++|||||++++..++-+
T Consensus       172 ~~~~~~~~~fD~V~LD~---------p~P---~~~l~~~~~~LKpGG~lv~~~P~i~  216 (324)
T d2b25a1         172 ATEDIKSLTFDAVALDM---------LNP---HVTLPVFYPHLKHGGVCAVYVVNIT  216 (324)
T ss_dssp             CC-------EEEEEECS---------SST---TTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred             cccccCCCCcceEeecC---------cCH---HHHHHHHHHhccCCCEEEEEeCCHH
Confidence            542   46789887632         112   2345899999999999988766544

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.3e-14  Score=117.58  Aligned_cols=106  Identities=12%  Similarity=0.120  Sum_probs=83.1

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC---------CCcceEEEEccccCCccCC-
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD---------GFSCIKFLVDDVLDTKLER-  164 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~---------~~~~~~~~~~d~~~~~~~~-  164 (278)
                      ++.++.+|||+|||+|.++..++.. ++.+++|+|+|+.+++.|+++.+..         ...+++++++|+.+.+... 
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~  227 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  227 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence            4678899999999999999998875 6668999999999999998876542         2246999999998865422 


Q ss_pred             --CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 --QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 --~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                        ..|+|+++... +..       +....+.++.+.|||||++++..
T Consensus       228 ~~~advi~~~~~~-f~~-------~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         228 IANTSVIFVNNFA-FGP-------EVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHCSEEEECCTT-TCH-------HHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cCcceEEEEccee-cch-------HHHHHHHHHHHhCCCCcEEEEec
Confidence              24788876543 222       55677799999999999998764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=4.7e-14  Score=112.28  Aligned_cols=111  Identities=15%  Similarity=0.237  Sum_probs=88.0

Q ss_pred             cchhhhc-cccCCCCeEEEEecCCCHHHHHHhhC----CC---CcEEEEeCChHHHHHHHHHhhhC-----CCcceEEEE
Q 023703           88 SEPVEEN-DKYLSSWSVLDIGTGNGLLLQELSKQ----GF---SDLTGVDYSEDAINLAQSLANRD-----GFSCIKFLV  154 (278)
Q Consensus        88 ~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~----~~---~~v~~~D~s~~~i~~a~~~~~~~-----~~~~~~~~~  154 (278)
                      ..++..+ ..+.++.+|||||||+|..+..++..    |.   .+|+++|+++.+++.|++++...     +..++.+..
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            3444444 35678999999999999998888764    21   37999999999999999886543     335799999


Q ss_pred             ccccCCc-cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          155 DDVLDTK-LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       155 ~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +|..+.. ..++||.|++.+..+.++             ..+.+.|||||++++....
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p-------------~~l~~~Lk~gG~lV~pvg~  192 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTP-------------TELINQLASGGRLIVPVGP  192 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCC-------------HHHHHTEEEEEEEEEEESC
T ss_pred             cccccccccccceeeEEEEeechhch-------------HHHHHhcCCCcEEEEEEec
Confidence            9998754 467899999998887765             5688999999999886543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=2e-13  Score=107.06  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=70.1

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ....|++|||+|||+|.++..++..|..+|+|+|+++.+++.+++|++.++. +.++..+|+...  +++||+|++++++
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~--~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--NSRVDIVIMNPPF  119 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--CCCCSEEEECCCC
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh--CCcCcEEEEcCcc
Confidence            3357889999999999999999998877999999999999999999998875 688999998664  6789999999998


Q ss_pred             cee
Q 023703          176 DAI  178 (278)
Q Consensus       176 ~~~  178 (278)
                      ...
T Consensus       120 ~~~  122 (201)
T d1wy7a1         120 GSQ  122 (201)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-12  Score=106.30  Aligned_cols=153  Identities=14%  Similarity=-0.004  Sum_probs=102.8

Q ss_pred             ccccCccccccccc---ccchhhhcc----ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhh
Q 023703           73 SISQGHMLNHVEDL---KSEPVEEND----KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR  144 (278)
Q Consensus        73 ~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~  144 (278)
                      .+.++.+.|+++.+   ...+...+.    ...+..+|||+|||+|..+..++.+ ...+++|+|+|+.+++.|++|++.
T Consensus        28 ~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~  107 (250)
T d2h00a1          28 DIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ  107 (250)
T ss_dssp             CCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             EeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH
Confidence            68888888876432   122222222    2234569999999999999999887 335899999999999999999999


Q ss_pred             CCCcc-eEEEEccccCCc-------cCCCccEEEeCCccceecc------------CCC--------C--------hhhH
Q 023703          145 DGFSC-IKFLVDDVLDTK-------LERQFQLVMDKGTLDAIGL------------HPD--------G--------PLKR  188 (278)
Q Consensus       145 ~~~~~-~~~~~~d~~~~~-------~~~~fD~v~~~~~~~~~~~------------~~~--------~--------~~~~  188 (278)
                      +++.+ +.+...+.....       ..++||+|+||++|..-.-            .++        .        ....
T Consensus       108 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~  187 (250)
T d2h00a1         108 NNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  187 (250)
T ss_dssp             TTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             hCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHH
Confidence            98865 777776654421       2467999999999853210            000        0        0124


Q ss_pred             HHHHHHHHhcccCCcEEEEEec-CCChHHHHHHHhhhh
Q 023703          189 IMYWDSVSKLVAPGGLLVITSC-NSTKDELVHEVSNLS  225 (278)
Q Consensus       189 ~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~  225 (278)
                      ..++++....++..|.+..... .....++...+.+..
T Consensus       188 ~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g  225 (250)
T d2h00a1         188 KRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQG  225 (250)
T ss_dssp             HHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcC
Confidence            5566777888899998866554 344555666555433

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.42  E-value=3.5e-14  Score=109.92  Aligned_cols=125  Identities=14%  Similarity=0.073  Sum_probs=93.3

Q ss_pred             ccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcc--eEEEEcc
Q 023703           79 MLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDD  156 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~--~~~~~~d  156 (278)
                      ..|+.+.....+...+.....+.+|||++||||.+++.++.+|+.+|+.+|.++.+++..++|++..++.+  ..+...|
T Consensus        23 ~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d  102 (183)
T d2ifta1          23 LRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  102 (183)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             cCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence            44555555566666665556788999999999999999999999899999999999999999999887643  6667777


Q ss_pred             ccCCc----cCCCccEEEeCCccceeccCCCChhhHHHHHHHHH--hcccCCcEEEEEecC
Q 023703          157 VLDTK----LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVS--KLVAPGGLLVITSCN  211 (278)
Q Consensus       157 ~~~~~----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~  211 (278)
                      +.+..    ...+||+|+.+++|..-        .....+..+.  .+|+++|.+++....
T Consensus       103 ~~~~l~~~~~~~~fDlIFlDPPY~~~--------~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         103 SLDFLKQPQNQPHFDVVFLDPPFHFN--------LAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCCSSSC--------HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             ccccccccccCCcccEEEechhHhhh--------hHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            65421    24579999999998642        3334445554  479999999998654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=2e-12  Score=110.96  Aligned_cols=106  Identities=14%  Similarity=0.159  Sum_probs=78.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC---------CcceEE-EEccccCCcc--
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---------FSCIKF-LVDDVLDTKL--  162 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~---------~~~~~~-~~~d~~~~~~--  162 (278)
                      ++.++.+|||||||+|.++..+|.. |+++++|+|+|+.+++.|+++.+..+         ...+.+ ..++......  
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d  292 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA  292 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccc
Confidence            4678899999999999999999887 76789999999999999999876532         112333 3444443321  


Q ss_pred             --CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          163 --ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       163 --~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                        -..+|+|+.+... +..       +....+.++.+.|||||+++...
T Consensus       293 ~~~~~adVV~inn~~-f~~-------~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         293 ELIPQCDVILVNNFL-FDE-------DLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HHGGGCSEEEECCTT-CCH-------HHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccceEEEEeccc-Cch-------HHHHHHHHHHHhcCCCcEEEEec
Confidence              1356788876432 222       66777899999999999998754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.2e-12  Score=100.50  Aligned_cols=117  Identities=15%  Similarity=0.216  Sum_probs=94.5

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK  161 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~  161 (278)
                      +.+..++..+.+..++++|||||||+|..+..++.. + ..+|+.+|.++...+.|+++++..|+.+ ++++.+|+.+..
T Consensus        45 ~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l  124 (219)
T d2avda1          45 CEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcc
Confidence            445566777777778889999999999999999986 2 2489999999999999999999998865 999999987642


Q ss_pred             -------cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          162 -------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       162 -------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                             ..++||+|+.+..-          .....+++.+.+.|+|||.+++....
T Consensus       125 ~~~~~~~~~~~fD~ifiD~dk----------~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         125 DELLAAGEAGTFDVAVVDADK----------ENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             HHHHHTTCTTCEEEEEECSCS----------TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             hhhhhhcccCCccEEEEeCCH----------HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence                   24689999975432          24566778899999999999997643

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=1.3e-11  Score=104.15  Aligned_cols=115  Identities=21%  Similarity=0.235  Sum_probs=88.0

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC----C--CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~----~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v  169 (278)
                      ...++.+|||.|||+|.++..+..+    +  ..+++|+|+++.+++.|+.++...+. +..+..+|........+||+|
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v  192 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVV  192 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEE
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhcccccccccccccccc
Confidence            4456779999999999999888642    1  23799999999999999999887764 577888888776677899999


Q ss_pred             EeCCccceecc-----------CCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          170 MDKGTLDAIGL-----------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       170 ~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++|++|.....           ..........+++.+.+.|+|||++.+..+.
T Consensus       193 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         193 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            99999854321           0111122345789999999999998877653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=4.7e-12  Score=100.04  Aligned_cols=119  Identities=15%  Similarity=0.107  Sum_probs=89.4

Q ss_pred             cccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCcc
Q 023703           86 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL  162 (278)
Q Consensus        86 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~~  162 (278)
                      ...+++..+....++++|||+|||+|..++.++.. + ..+|+++|+++..++.|+++++..|+.+ ++++.+|..+..+
T Consensus        43 ~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~  122 (214)
T d2cl5a1          43 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP  122 (214)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence            33445555555566789999999999999999985 2 2489999999999999999999988865 9999999976421


Q ss_pred             -------CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          163 -------ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       163 -------~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                             .++||+|+..+.-+..        .....+.+..++|+|||++++.....
T Consensus       123 ~l~~~~~~~~~D~ifiD~~~~~~--------~~~~~l~~~~~lLkpGGvIv~Ddvl~  171 (214)
T d2cl5a1         123 QLKKKYDVDTLDMVFLDHWKDRY--------LPDTLLLEKCGLLRKGTVLLADNVIV  171 (214)
T ss_dssp             GHHHHSCCCCEEEEEECSCGGGH--------HHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred             chhhcccccccceeeeccccccc--------ccHHHHHHHhCccCCCcEEEEeCcCC
Confidence                   2579999976433221        22234567788999999988765433

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=1.1e-11  Score=95.90  Aligned_cols=125  Identities=15%  Similarity=0.193  Sum_probs=94.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCccE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQL  168 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD~  168 (278)
                      ...++..+||++||+|..+..+++. +..+|+|+|.++.+++.|+++++..+ .++.+++++..+..      ..++||.
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~~~~~~vdg   98 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDG   98 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHHcCCCCcce
Confidence            3467889999999999999999886 34589999999999999999998775 47999999887643      1368998


Q ss_pred             EEeCCccceecc--CCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          169 VMDKGTLDAIGL--HPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       169 v~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      |+.+-.+....+  ...+.......+..+.++|+|||.+++.++....+.....+
T Consensus        99 Il~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~  153 (192)
T d1m6ya2          99 ILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKET  153 (192)
T ss_dssp             EEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             eeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHH
Confidence            876533221111  11223455677899999999999999998877666555543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.16  E-value=3.7e-11  Score=95.34  Aligned_cols=114  Identities=14%  Similarity=0.211  Sum_probs=91.6

Q ss_pred             ccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-C-CCcEEEEeCChHHHHHHHHHhhhCCCcc-eEEEEccccCCc--
Q 023703           87 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK--  161 (278)
Q Consensus        87 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~-~~~~~~d~~~~~--  161 (278)
                      +.+++..+....++++||||||++|..+..++.. + ..+++.+|.++...+.|+++++..|+.+ ++++.+|+.+.-  
T Consensus        47 ~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~  126 (227)
T d1susa1          47 EGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDE  126 (227)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHH
Confidence            3446666666667889999999999999999864 2 2489999999999999999999998865 999999997642  


Q ss_pred             ------cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          162 ------LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       162 ------~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                            ..++||+|+.+..-          .....+++.+.+.|+|||.+++...
T Consensus       127 l~~~~~~~~~fD~iFiDa~k----------~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         127 MIKDEKNHGSYDFIFVDADK----------DNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             HHHCGGGTTCBSEEEECSCS----------TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             HHhccccCCceeEEEeccch----------hhhHHHHHHHHhhcCCCcEEEEccC
Confidence                  13579999975421          2556777899999999999999754

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=9.5e-10  Score=93.50  Aligned_cols=126  Identities=18%  Similarity=0.239  Sum_probs=87.7

Q ss_pred             cccCcccccccccccchhhhc---cccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcce
Q 023703           74 ISQGHMLNHVEDLKSEPVEEN---DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI  150 (278)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~  150 (278)
                      +.++.+..........+...+   ....++.+|||+.||+|.+++.|++.. ++|+|+|.++.+++.|++|++.+++.|+
T Consensus       184 i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~  262 (358)
T d1uwva2         184 FSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNV  262 (358)
T ss_dssp             CCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred             ECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccc
Confidence            444444433333333344333   234567899999999999999999984 5999999999999999999999999999


Q ss_pred             EEEEccccCCcc-----CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          151 KFLVDDVLDTKL-----ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       151 ~~~~~d~~~~~~-----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      .++.+|..+...     ..++|+|+.+++=..+          ...++.+.+. +|.-++++ +|++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~----------~~~~~~l~~~-~~~~ivYV-SCnp  317 (358)
T d1uwva2         263 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA----------AGVMQQIIKL-EPIRIVYV-SCNP  317 (358)
T ss_dssp             EEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC----------HHHHHHHHHH-CCSEEEEE-ESCH
T ss_pred             eeeecchhhhhhhhhhhhccCceEEeCCCCccH----------HHHHHHHHHc-CCCEEEEE-eCCH
Confidence            999999877431     3568988876654322          1234555543 66654544 4543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.1e-09  Score=88.63  Aligned_cols=143  Identities=15%  Similarity=0.103  Sum_probs=104.8

Q ss_pred             cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc
Q 023703           84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  161 (278)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~  161 (278)
                      ++....+...+....++.+|||++||.|.-+..++..  +...|+++|+++.-++.++++++..|+.++.+...|.....
T Consensus        79 QD~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~  158 (293)
T d2b9ea1          79 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS  158 (293)
T ss_dssp             CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC
T ss_pred             cCCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhc
Confidence            4455555556666788999999999999988888764  33489999999999999999999999989999999987654


Q ss_pred             c----CCCccEEEeCCccceecc---CC--------C--Ch----hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703          162 L----ERQFQLVMDKGTLDAIGL---HP--------D--GP----LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       162 ~----~~~fD~v~~~~~~~~~~~---~~--------~--~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  220 (278)
                      .    .++||.|+.+.+-.....   ++        .  ..    .....++..+. .|+|||.++.++|+-..+|....
T Consensus       159 ~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~v  237 (293)
T d2b9ea1         159 PSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDV  237 (293)
T ss_dssp             TTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHH
T ss_pred             ccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHH
Confidence            3    367999998766433211   11        1  01    11134555566 47999999999999988887777


Q ss_pred             Hhhhhhc
Q 023703          221 VSNLSQR  227 (278)
Q Consensus       221 ~~~~~~~  227 (278)
                      +..+-.+
T Consensus       238 V~~~L~~  244 (293)
T d2b9ea1         238 VRDALQQ  244 (293)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            7665544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.07  E-value=2.6e-10  Score=88.44  Aligned_cols=106  Identities=14%  Similarity=0.158  Sum_probs=74.0

Q ss_pred             CCCCeEEEEecCCCHH----HHHHhhC----CC-CcEEEEeCChHHHHHHHHHh------------------hhCCC---
Q 023703           98 LSSWSVLDIGTGNGLL----LQELSKQ----GF-SDLTGVDYSEDAINLAQSLA------------------NRDGF---  147 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~----~~~l~~~----~~-~~v~~~D~s~~~i~~a~~~~------------------~~~~~---  147 (278)
                      .+..+|+++|||+|.-    ++.+.+.    +. -+|+|+|+|+.+++.|++..                  ...+.   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3456999999999963    3333332    11 26999999999999997432                  11000   


Q ss_pred             ----------cceEEEEccccCCc--cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          148 ----------SCIKFLVDDVLDTK--LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       148 ----------~~~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                                ..+.+...+.....  ..++||+|+|.+++.++.     +.....+++++.+.|+|||.|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-----~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-----KTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-----HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-----HHHHHHHHHHHHHHhCCCcEEEEe
Confidence                      11345555555432  357899999999987664     456678899999999999988876

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=9.2e-10  Score=85.73  Aligned_cols=108  Identities=18%  Similarity=0.130  Sum_probs=91.1

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ++.+|+|+|||.|.-++.++-. +..+++.+|.+..-+...++-....+++|+++++..+.+.....+||+|++...-  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~--  142 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence            4579999999999988888864 4458999999999999999999999998999999999988777789999986543  


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHH
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDEL  217 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  217 (278)
                               ....+++-+...++++|.+++.-.....++.
T Consensus       143 ---------~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl  173 (207)
T d1jsxa_         143 ---------SLNDMVSWCHHLPGEQGRFYALKGQMPEDEI  173 (207)
T ss_dssp             ---------SHHHHHHHHTTSEEEEEEEEEEESSCCHHHH
T ss_pred             ---------CHHHHHHHHHHhcCCCcEEEEECCCCHHHHH
Confidence                     4556678899999999999998876665543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=5.2e-10  Score=91.85  Aligned_cols=145  Identities=18%  Similarity=0.200  Sum_probs=107.3

Q ss_pred             cccccchhhhccccCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-
Q 023703           84 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-  161 (278)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-  161 (278)
                      ++...++...+....++.+|||+++|.|.=+..+++.+ ...|+++|+++.-++.++++++..|+.++.....|..... 
T Consensus        87 QD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~  166 (284)
T d1sqga2          87 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW  166 (284)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH
T ss_pred             ccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchh
Confidence            44555555556667889999999999999998888763 2479999999999999999999999876665555544322 


Q ss_pred             -cCCCccEEEeCCccceecc---CC--------CCh----hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          162 -LERQFQLVMDKGTLDAIGL---HP--------DGP----LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       162 -~~~~fD~v~~~~~~~~~~~---~~--------~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                       ..+.||.|+.+.+-.....   ++        ...    .....+|.++.+.|||||+++.++|+-..+|....+..+-
T Consensus       167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l  246 (284)
T d1sqga2         167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFL  246 (284)
T ss_dssp             HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHH
Confidence             3568999998765533321   11        111    1225788999999999999999999998888777777665


Q ss_pred             hcc
Q 023703          226 QRR  228 (278)
Q Consensus       226 ~~~  228 (278)
                      .++
T Consensus       247 ~~~  249 (284)
T d1sqga2         247 QRT  249 (284)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.04  E-value=2.9e-10  Score=92.91  Aligned_cols=109  Identities=21%  Similarity=0.303  Sum_probs=83.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC----------CCcceEEEEccccCCc-cCCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GFSCIKFLVDDVLDTK-LERQF  166 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~----------~~~~~~~~~~d~~~~~-~~~~f  166 (278)
                      .++++||.||+|.|..+..+.+++..+|+.+|+++..++.|++.+...          .-++++++.+|+.... ..++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            456799999999999999998886678999999999999999876432          1246999999997643 35789


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+|+....- ..  .+........+++.+++.|+|||+++...
T Consensus       151 DvIi~D~~~-~~--~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         151 DVIIADSTD-PV--GPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEECCC-CC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCCC-CC--CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            999975432 11  12222334678899999999999998865

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.03  E-value=1.6e-10  Score=92.78  Aligned_cols=99  Identities=19%  Similarity=0.229  Sum_probs=76.5

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  176 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~  176 (278)
                      ....+|||||||+|.++..++++ +..+++..|. |..++.+      ...++++++.+|+.+..+  ..|+++...+++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~~~p--~~D~~~l~~vLh  150 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA------PPLSGIEHVGGDMFASVP--QGDAMILKAVCH  150 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCCTTEEEEECCTTTCCC--CEEEEEEESSGG
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc------CCCCCeEEecCCcccccc--cceEEEEehhhh
Confidence            44579999999999999999887 4348999997 4444322      122579999999987543  359999887776


Q ss_pred             eeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          177 AIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ...     .++...+|+++++.|+|||++++.+.
T Consensus       151 ~~~-----de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         151 NWS-----DEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             GSC-----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hCC-----HHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            543     56778899999999999999999863

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=3.3e-10  Score=94.13  Aligned_cols=111  Identities=22%  Similarity=0.317  Sum_probs=83.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC-----CCcceEEEEccccCCc--cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-----GFSCIKFLVDDVLDTK--LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~-----~~~~~~~~~~d~~~~~--~~~~fD~v  169 (278)
                      ..+++||.||.|.|..+..+++. +..+|+++|+++..++.|++.+...     .-++++++.+|+...-  .+++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            45679999999999999999887 4458999999999999999987431     1146999999998753  35789999


Q ss_pred             EeCCccceeccC-CCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          170 MDKGTLDAIGLH-PDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       170 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +...+ +..... +........+++.+++.|+|||++++..
T Consensus       156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            96532 111100 1111234678899999999999998854

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.01  E-value=8.7e-10  Score=91.68  Aligned_cols=141  Identities=14%  Similarity=0.124  Sum_probs=105.7

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  162 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~  162 (278)
                      +....+...+....++.+|||++||.|.=+..++..  +...+++.|.++.-++.++++++..++.++.+...|......
T Consensus       102 D~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~  181 (313)
T d1ixka_         102 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE  181 (313)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG
T ss_pred             cccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            444445555566788999999999999988888764  234799999999999999999999998888888888776543


Q ss_pred             -CCCccEEEeCCccceecc---CC-----CCh-------hhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhhh
Q 023703          163 -ERQFQLVMDKGTLDAIGL---HP-----DGP-------LKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNLS  225 (278)
Q Consensus       163 -~~~fD~v~~~~~~~~~~~---~~-----~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  225 (278)
                       ...||.|+...+-.....   ++     ...       .....++.++.+.|||||.++.++|+-..+|.-..+..+.
T Consensus       182 ~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L  260 (313)
T d1ixka_         182 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL  260 (313)
T ss_dssp             GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHH
Confidence             678999998655432211   11     011       2225778899999999999999999988877766666544

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.96  E-value=1.3e-09  Score=94.84  Aligned_cols=126  Identities=14%  Similarity=0.143  Sum_probs=92.8

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC----C----------CCcEEEEeCChHHHHHHHHHhhhCCCc--
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFS--  148 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~----------~~~v~~~D~s~~~i~~a~~~~~~~~~~--  148 (278)
                      .....|+..+ ...++.+|+|.+||+|.+...+.++    .          ...+.|+|+++.+...|+.++..++..  
T Consensus       149 ~Iv~~mv~ll-~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~  227 (425)
T d2okca1         149 PLIQAMVDCI-NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  227 (425)
T ss_dssp             HHHHHHHHHH-CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             hhhHhhheec-cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence            3444444443 3456789999999999999887663    1          025999999999999999998877653  


Q ss_pred             ceEEEEccccCCccCCCccEEEeCCccceeccC----------CCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          149 CIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLH----------PDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       149 ~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ...+...|........+||+|++|++|..-...          .........++..+.+.|+|||++.+..++
T Consensus       228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence            356788888877677899999999999533211          111223456889999999999998887653

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.96  E-value=4.4e-10  Score=88.93  Aligned_cols=107  Identities=18%  Similarity=0.260  Sum_probs=78.4

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCC
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  173 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  173 (278)
                      ...++.+|||.|||+|.++..+.+.  ....++|+|+++.+++.++         ...++++|........+||++++++
T Consensus        16 ~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---------~~~~~~~~~~~~~~~~~fd~ii~np   86 (223)
T d2ih2a1          16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---------WAEGILADFLLWEPGEAFDLILGNP   86 (223)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---------TEEEEESCGGGCCCSSCEEEEEECC
T ss_pred             CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---------cceeeeeehhccccccccceecccC
Confidence            3456789999999999998888764  2347999999998654332         3577888888777778999999999


Q ss_pred             ccceeccCC----------------------CChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          174 TLDAIGLHP----------------------DGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       174 ~~~~~~~~~----------------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ++.......                      ........++..+.+.|+|||++.+..++
T Consensus        87 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          87 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            985432111                      00112346778999999999999887643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.91  E-value=1.5e-09  Score=89.10  Aligned_cols=113  Identities=14%  Similarity=0.190  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      ..+++||-||.|.|..+..++++ +..+|+++|+++..++.|++.+...    .-++++++.+|+...-  .+++||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            35679999999999999999988 4568999999999999999977542    1246999999998753  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ...+-...  .+........+++.+++.|+|||+++....++
T Consensus       168 ~D~~dp~~--~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         168 IDSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             EEC------------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EcCCCCCc--CchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            75432111  11112234678899999999999999876543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.87  E-value=3.5e-08  Score=78.36  Aligned_cols=78  Identities=15%  Similarity=0.238  Sum_probs=65.1

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~  174 (278)
                      ...++.+|||||||+|.++..+++.+ .+|+++|+++.+++.+++++...  ++++++++|+.+...+ .....|++|-+
T Consensus        18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~--~n~~i~~~D~l~~~~~~~~~~~vv~NLP   94 (235)
T d1qama_          18 RLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSYKIFGNIP   94 (235)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCCEEEEECC
T ss_pred             CCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc--cchhhhhhhhhhccccccccceeeeeeh
Confidence            34678899999999999999999986 58999999999999999987654  5899999999987643 33346788888


Q ss_pred             cc
Q 023703          175 LD  176 (278)
Q Consensus       175 ~~  176 (278)
                      |.
T Consensus        95 Yn   96 (235)
T d1qama_          95 YN   96 (235)
T ss_dssp             GG
T ss_pred             hh
Confidence            74

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=5.1e-09  Score=85.16  Aligned_cols=111  Identities=22%  Similarity=0.286  Sum_probs=85.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      ..+++||-||-|.|..+..+.++ +..+|+.+|+++..++.|++.+...    .-++++++.+|....-  .+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            45679999999999999999987 4569999999999999999987431    2246999999987743  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ...+- ..  .+........+++.+++.|+|||+++....+
T Consensus       154 ~D~~~-p~--~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         154 VDSTE-PV--GPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             ESCSS-CC--SCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCC-CC--CcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            87542 11  1112223467889999999999999987644

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=1.9e-09  Score=86.41  Aligned_cols=97  Identities=14%  Similarity=0.155  Sum_probs=75.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ...+|||||||+|..+..++++ +..+++..|. |..++.+.      ..++++++.+|+++..  ..+|+++...+++.
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~~--p~aD~~~l~~vLHd  150 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTSI--PNADAVLLKYILHN  150 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTCC--CCCSEEEEESCGGG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccCC--CCCcEEEEEeeccc
Confidence            3458999999999999999887 3358999998 44444332      1247999999998753  35799999887765


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCC---cEEEEEe
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPG---GLLVITS  209 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~  209 (278)
                      ..     .++...+|+++++.|+||   |++++..
T Consensus       151 w~-----d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         151 WT-----DKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             SC-----HHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             CC-----hHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            53     567788999999999998   7777765

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.3e-09  Score=85.48  Aligned_cols=111  Identities=20%  Similarity=0.329  Sum_probs=82.6

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      ..+++||-||-|.|..+..+.++ +..+|+.+|+++..++.|++.+...    .-++++++.+|+...-  ..++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            45679999999999999999987 4569999999999999999987431    1257999999988753  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .... +-.  .+........+++.+++.|+|||++++...+
T Consensus       157 ~D~~-~p~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         157 TDSS-DPM--GPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EECC--------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcCC-CCC--CcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            8643 211  2222334457889999999999999987644

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.83  E-value=4.1e-09  Score=86.79  Aligned_cols=112  Identities=18%  Similarity=0.293  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCC----CcceEEEEccccCCc--cCCCccEEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVM  170 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~v~  170 (278)
                      ..+++||-||-|.|..+..+.++ +..+|+.+|+++..++.|++.+....    -++++++.+|....-  ..++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            45679999999999999999997 34689999999999999999875422    146999999998753  357899999


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      ...+- -.  .+........+++.+++.|+|||+++....+.
T Consensus       185 ~D~~d-p~--~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         185 TDSSD-PV--GPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             ECCC----------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             EcCCC-CC--CcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            86442 11  22233355678899999999999999976433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.80  E-value=9.1e-09  Score=84.30  Aligned_cols=112  Identities=17%  Similarity=0.326  Sum_probs=85.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEccccCCc---cCCCccEE
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTK---LERQFQLV  169 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~d~~~~~---~~~~fD~v  169 (278)
                      ..+++||-||-|.|..+..+.++ +..+++.+|+++..++.|++.+...    .-++++++.+|....-   .+++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            35679999999999999999998 4468999999999999999976432    1246999999987653   24689999


Q ss_pred             EeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          170 MDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      +...+ +-  ..+........+++.+++.|+|||+++....+.
T Consensus       159 i~D~~-dp--~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         159 IVDSS-DP--IGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EECCC-CT--TSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCC-CC--CCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            97543 21  122223345678899999999999999986544

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.80  E-value=2.4e-09  Score=90.89  Aligned_cols=121  Identities=19%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             cccccccccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcc-------
Q 023703           78 HMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-------  149 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~-------  149 (278)
                      .+.++.+...+.+--.+....++.+|||..||+|..++..+.. |..+|++.|+|+.+++.+++|++.+++.+       
T Consensus        24 vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~  103 (375)
T d2dula1          24 VFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGR  103 (375)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSE
T ss_pred             cccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccccccccc
Confidence            4554444444444333334446789999999999999976664 66699999999999999999999887543       


Q ss_pred             --------eEEEEccccCCc--cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          150 --------IKFLVDDVLDTK--LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       150 --------~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                              +.+.+.|+....  ....||+|..++ |.          ....+++.+.+.++.||.+.++.
T Consensus       104 ~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP-fG----------s~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         104 AILKGEKTIVINHDDANRLMAERHRYFHFIDLDP-FG----------SPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             EEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC-SS----------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccceeEeehhhhhhhhHhhcCcCCcccCCC-CC----------CcHHHHHHHHHHhccCCEEEEEe
Confidence                    455566654432  245699887653 21          33457789999999999998873

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2e-08  Score=89.29  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=84.7

Q ss_pred             ccccchhhhccccCCCCeEEEEecCCCHHHHHHhhC----CC---------------CcEEEEeCChHHHHHHHHHhhhC
Q 023703           85 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----GF---------------SDLTGVDYSEDAINLAQSLANRD  145 (278)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~---------------~~v~~~D~s~~~i~~a~~~~~~~  145 (278)
                      .....|+..+ ...++.+|+|.+||+|.+...+.++    ..               ..++|+|+++.+...|+.++...
T Consensus       151 ~Iv~~mv~ll-~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~  229 (524)
T d2ar0a1         151 PLIKTIIHLL-KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHHHHH-CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             chhHhhhhcc-cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence            3333344433 3456779999999999998876552    10               15899999999999999988766


Q ss_pred             CCcc-----eEEEEccccCCc--cCCCccEEEeCCccceecc-------CCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          146 GFSC-----IKFLVDDVLDTK--LERQFQLVMDKGTLDAIGL-------HPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       146 ~~~~-----~~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +...     -.+...+.....  ...+||+|++|++|..-..       .++.......+++.+.+.|+|||++.+..+.
T Consensus       230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence            5421     233444444322  2467999999999943211       1112223356889999999999998887653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.70  E-value=3.3e-08  Score=79.07  Aligned_cols=97  Identities=12%  Similarity=0.168  Sum_probs=71.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccce
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  177 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  177 (278)
                      ...+|||||||+|.++..++++ +..++++.|..+. ++.++      ..+++.+..+|+++..+.  .|+++...+++ 
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~------~~~r~~~~~~d~~~~~P~--ad~~~l~~vlh-  150 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP------SYPGVEHVGGDMFVSIPK--ADAVFMKWICH-  150 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC------CCTTEEEEECCTTTCCCC--CSCEECSSSST-
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc------cCCceEEecccccccCCC--cceEEEEEEee-
Confidence            3468999999999999999997 3358999998654 32221      124699999999875333  45566554443 


Q ss_pred             eccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          178 IGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                          .-+..+...+|+++++.|+|||++++.+
T Consensus       151 ----~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         151 ----DWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             ----TSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             ----cCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence                3345677889999999999999998875

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.69  E-value=4.3e-08  Score=77.57  Aligned_cols=110  Identities=18%  Similarity=0.227  Sum_probs=89.0

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEEEeCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMDKG  173 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~~  173 (278)
                      .+.+|+|+|+|.|.-++.++-. +..+++.+|.+..-+...+.-....++.++.+++..+.+..    ..++||+|++..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            4579999999999888888763 55689999999999999999888899989999998886543    246899999875


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      +.           ....+++-+...+++||.+++.-.....+++..
T Consensus       150 va-----------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~  184 (239)
T d1xdza_         150 VA-----------RLSVLSELCLPLVKKNGLFVALKAASAEEELNA  184 (239)
T ss_dssp             CS-----------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHH
T ss_pred             hh-----------CHHHHHHHHhhhcccCCEEEEECCCChHHHHHH
Confidence            43           555677889999999999999877766666544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.60  E-value=1.3e-09  Score=87.34  Aligned_cols=78  Identities=19%  Similarity=0.333  Sum_probs=65.3

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC-CCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~  174 (278)
                      ...++.+|||||||+|.++..|++.+ .+|+++|+++.+++.+++++...  ++++++++|+.+...+ ..++.|++|-+
T Consensus        26 ~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~--~n~~ii~~D~l~~~~~~~~~~~vv~NLP  102 (245)
T d1yuba_          26 NLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN--TRVTLIHQDILQFQFPNKQRYKIVGNIP  102 (245)
T ss_dssp             CCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC--SEEEECCSCCTTTTCCCSSEEEEEEECC
T ss_pred             CCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhc--cchhhhhhhhhccccccceeeeEeeeee
Confidence            34567899999999999999999986 58999999999999988776543  5899999999987654 56677888888


Q ss_pred             cc
Q 023703          175 LD  176 (278)
Q Consensus       175 ~~  176 (278)
                      |+
T Consensus       103 Y~  104 (245)
T d1yuba_         103 YH  104 (245)
T ss_dssp             SS
T ss_pred             hh
Confidence            74

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=8.2e-08  Score=72.96  Aligned_cols=116  Identities=22%  Similarity=0.286  Sum_probs=81.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhC--CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cCCCc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQF  166 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~f  166 (278)
                      .++.+|||+||+.|.++..+.+.  ....++++|+.+.           ..++++.++++|..+..         ...++
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcce
Confidence            57889999999999999998875  3358999998762           23467899999998742         14689


Q ss_pred             cEEEeCCccceeccCCCC----hhhHHHHHHHHHhcccCCcEEEEEecCCC-hHHHHHHHhhh
Q 023703          167 QLVMDKGTLDAIGLHPDG----PLKRIMYWDSVSKLVAPGGLLVITSCNST-KDELVHEVSNL  224 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~  224 (278)
                      |+|++++..+.-.....+    ..-....+.-+.++|++||.+++-.+... ..++...+..+
T Consensus        90 DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~  152 (180)
T d1ej0a_          90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL  152 (180)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH
T ss_pred             eEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhh
Confidence            999999876532210000    11123555778899999999999876543 34555555543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.60  E-value=5.5e-08  Score=74.00  Aligned_cols=121  Identities=17%  Similarity=0.249  Sum_probs=88.8

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc------CCCccEE
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQLV  169 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~------~~~fD~v  169 (278)
                      .+.++..++|..||.|..+..+...+ .+|+|+|.++.+++.+++..    .+++.+++.+..+...      .+.+|.|
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~vdgI   89 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAALGVERVDGI   89 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHHcCCCccCEE
Confidence            34688899999999999999999885 48999999999999998742    2478999988876531      3679988


Q ss_pred             EeCCccceeccCC--CChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          170 MDKGTLDAIGLHP--DGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       170 ~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                      +.+-.+....++.  .+.......|......|+|||.+++.+++...+.....+
T Consensus        90 l~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~  143 (182)
T d1wg8a2          90 LADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRF  143 (182)
T ss_dssp             EEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             EEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHH
Confidence            8754332222211  122334457788999999999999999876665554443

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.3e-06  Score=70.62  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=66.2

Q ss_pred             ccCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCccCCCccEEEeCCc
Q 023703           96 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ...++..|||||+|.|.++..|++.+ ++|+++|+++.+++..++.+..... .+++++.+|+.....+. ++.|++|-+
T Consensus        18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~-~~~vV~NLP   95 (278)
T d1zq9a1          18 ALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF-FDTCVANLP   95 (278)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC-CSEEEEECC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh-hhhhhcchH
Confidence            34567899999999999999999986 5999999999999999998876543 46999999999876543 457888888


Q ss_pred             cc
Q 023703          175 LD  176 (278)
Q Consensus       175 ~~  176 (278)
                      |.
T Consensus        96 Y~   97 (278)
T d1zq9a1          96 YQ   97 (278)
T ss_dssp             GG
T ss_pred             HH
Confidence            74

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=9.2e-08  Score=76.55  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccC------CCccEEE
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE------RQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~------~~fD~v~  170 (278)
                      ..++..|||||||+|.++..|++.+ .+|+++|+++.+++..+++....  ++++++.+|+.+....      +.--.|+
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~~~~~~~~~~~~~~vv   95 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRVF   95 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhcccccccccCCCeEEE
Confidence            4567899999999999999999986 58999999999999998765433  5799999999986432      1222677


Q ss_pred             eCCccc
Q 023703          171 DKGTLD  176 (278)
Q Consensus       171 ~~~~~~  176 (278)
                      .|-+|.
T Consensus        96 gNlPY~  101 (252)
T d1qyra_          96 GNLPYN  101 (252)
T ss_dssp             EECCTT
T ss_pred             ecchHH
Confidence            887774

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.27  E-value=4.1e-07  Score=71.36  Aligned_cols=126  Identities=8%  Similarity=0.028  Sum_probs=75.6

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhCC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      ..+..+|+|+|||.|.++..++... ...|.|+++--..-+. -......+..-+.+...+.....++++.|+|+|+..-
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~e  142 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGE  142 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-CccccccccccccchhhhhHHhcCCCcCCEEEeeCCC
Confidence            3677799999999999999999873 2367777773211000 0001111211245555544444456889999997532


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHHhhh
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEVSNL  224 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  224 (278)
                      . -.....+......+++.+.+.|+|||-|++-...+...+..+.++.+
T Consensus       143 s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~l  190 (257)
T d2p41a1         143 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEAL  190 (257)
T ss_dssp             C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHH
T ss_pred             C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHH
Confidence            1 10000011233466788889999999999987776666666655543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.11  E-value=1.4e-06  Score=68.57  Aligned_cols=99  Identities=20%  Similarity=0.329  Sum_probs=64.0

Q ss_pred             CCCCeEEEEecCCCHHHHHHhh----CC-CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSK----QG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQ  167 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~----~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD  167 (278)
                      .++++|||||++.|..+..++.    .+ ..+++++|+.+.......     ...++++++.+|..+...     ...+|
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I~~i~gDs~~~~~~~~l~~~~~d  153 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHP  153 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccccceeeeecccccHHHHHHHHhcCCC
Confidence            3567999999999987776653    22 348999999875433222     112579999999876532     34577


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+..+.  |..     . ....-+ .....|+|||++++.+.
T Consensus       154 lIfID~~--H~~-----~-~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         154 LIFIDNA--HAN-----T-FNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             EEEEESS--CSS-----H-HHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             EEEEcCC--cch-----H-HHHHHH-HHhcccCcCCEEEEEcC
Confidence            7775443  111     1 222222 35579999999999764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.84  E-value=7.6e-06  Score=64.67  Aligned_cols=76  Identities=14%  Similarity=0.065  Sum_probs=60.8

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC---------CcceEEEEccccCCc--cCCCccEE
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG---------FSCIKFLVDDVLDTK--LERQFQLV  169 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~---------~~~~~~~~~d~~~~~--~~~~fD~v  169 (278)
                      .+|||.-||.|..+..++..|+ +|+++|.+|......+..+....         ..+++++++|..+..  ....||+|
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            4899999999999999999986 89999999988777766554321         136899999987643  35679999


Q ss_pred             EeCCccce
Q 023703          170 MDKGTLDA  177 (278)
Q Consensus       170 ~~~~~~~~  177 (278)
                      +..+.|..
T Consensus       169 YlDPMFp~  176 (250)
T d2oyra1         169 YLDPMFPH  176 (250)
T ss_dssp             EECCCCCC
T ss_pred             EECCCCcc
Confidence            99888753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=1.6e-05  Score=60.09  Aligned_cols=95  Identities=18%  Similarity=0.264  Sum_probs=61.7

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc---cccCC-------ccC
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLDT-------KLE  163 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~---d~~~~-------~~~  163 (278)
                      +.+++.+||-+|||. |..+..+++. |+.+|+++|.++..++.+++.    |..  .++..   +..+.       ...
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--~vi~~~~~~~~~~~~~i~~~~~~   98 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD--LTLNRRETSVEERRKAIMDITHG   98 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS--EEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce--EEEeccccchHHHHHHHHHhhCC
Confidence            446789999999874 4566666665 766899999999999988763    322  12221   11111       113


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..+|+|+..-.-.          .   .++.+.++|+|||++++..
T Consensus        99 ~g~Dvvid~vG~~----------~---~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          99 RGADFILEATGDS----------R---ALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SCEEEEEECSSCT----------T---HHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEeecCCch----------h---HHHHHHHHhcCCCEEEEEe
Confidence            4589988532110          1   2267889999999998775

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.68  E-value=4.2e-05  Score=60.32  Aligned_cols=112  Identities=15%  Similarity=0.098  Sum_probs=79.2

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCC-----------------------------------------CCcEEEEeCChHHHH
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQG-----------------------------------------FSDLTGVDYSEDAIN  136 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~-----------------------------------------~~~v~~~D~s~~~i~  136 (278)
                      ..+..++|..||+|++.+..+...                                         ...++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            445679999999999988765410                                         014679999999999


Q ss_pred             HH---HHHhhhCCCcc-eEEEEccccCCcc------CCCccEEEeCCccceec-cCCC-ChhhHHHHHHHHHhcccCCcE
Q 023703          137 LA---QSLANRDGFSC-IKFLVDDVLDTKL------ERQFQLVMDKGTLDAIG-LHPD-GPLKRIMYWDSVSKLVAPGGL  204 (278)
Q Consensus       137 ~a---~~~~~~~~~~~-~~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~LkpgG~  204 (278)
                      .|   ++|+...|+.. +.+.+.|+++...      +...++|++|++|..=. .... .......+...+.+++.....
T Consensus       129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~  208 (249)
T d1o9ga_         129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  208 (249)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence            88   46888888765 8999999987542      45679999999995432 1111 123456677788888866566


Q ss_pred             EEEEe
Q 023703          205 LVITS  209 (278)
Q Consensus       205 l~~~~  209 (278)
                      ++++.
T Consensus       209 ~~it~  213 (249)
T d1o9ga_         209 IAVTD  213 (249)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            66653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.66  E-value=8.7e-05  Score=55.46  Aligned_cols=98  Identities=21%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-------ccCCCc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-------~~~~~f  166 (278)
                      +.+++.+||-+|||. |..+..+++. |+.+|+++|.++.-++.+++.    |..  .++...-.+.       .....+
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~--~~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT--DILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS--EEECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc--ccccccchhHHHHHHHHhhccCc
Confidence            457889999999986 6777777776 766899999999999988763    321  2222221111       112459


Q ss_pred             cEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCC
Q 023703          167 QLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNS  212 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  212 (278)
                      |+|+..-.-.             ..++.+.++++|+|.+++.....
T Consensus        98 D~vid~~g~~-------------~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          98 DRVIMAGGGS-------------ETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             EEEEECSSCT-------------THHHHHHHHEEEEEEEEECCCCC
T ss_pred             ceEEEccCCH-------------HHHHHHHHHHhcCCEEEEEeecC
Confidence            9988643211             12267889999999999976433

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=4.2e-05  Score=56.86  Aligned_cols=97  Identities=20%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc-cccCC--ccCCCccEEE
Q 023703           96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDT--KLERQFQLVM  170 (278)
Q Consensus        96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~-d~~~~--~~~~~fD~v~  170 (278)
                      +..++.+||-+|+| .|.++..+++. |+ +|+++|.++..++.+++.    |.+  .++.. +-.+.  ...+.+|+++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~--~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD--HYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS--EEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc--EEeeccchHHHHHhhhcccceEE
Confidence            45688999999997 45666666655 75 899999999999988763    322  22221 11111  1246789887


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ..-.-..    ...       +....++|+|+|++++...
T Consensus        97 ~~~~~~~----~~~-------~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          97 VCASSLT----DID-------FNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             ECCSCST----TCC-------TTTGGGGEEEEEEEEECCC
T ss_pred             EEecCCc----cch-------HHHHHHHhhccceEEEecc
Confidence            6321100    000       1467889999999988753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.34  E-value=0.00046  Score=50.96  Aligned_cols=96  Identities=19%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             ccCCCCeEEEEecC-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------c
Q 023703           96 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L  162 (278)
Q Consensus        96 ~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~  162 (278)
                      +.+++.+||-+||| .|.++..+++. |+ +|+++|.++.-++.|++.    +. ...+ ..+.....           .
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga-~~~~-~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GA-DVTL-VVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TC-SEEE-ECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CC-cEEE-eccccccccchhhhhhhccc
Confidence            34678899999987 34555555555 65 899999999999999873    22 2222 22221110           1


Q ss_pred             CCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          163 ERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .+.+|+|+....-             ...+..+.++++|+|++++....
T Consensus        96 g~g~D~vid~~g~-------------~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          96 GDLPNVTIDCSGN-------------EKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             SSCCSEEEECSCC-------------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ccCCceeeecCCC-------------hHHHHHHHHHHhcCCceEEEecC
Confidence            3568988863221             12337788999999999987643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.29  E-value=0.00054  Score=50.93  Aligned_cols=98  Identities=17%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             cccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-C-------ccCC
Q 023703           95 DKYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-T-------KLER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~-------~~~~  164 (278)
                      .+..++.+||-+|||. |..+..+++. |+..|+.+|.++.-++.|++    .|..  .++...-.+ .       ...+
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT--DCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHHHTS
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC--cccCCccchhhhhhhHhhhhcC
Confidence            3457889999999987 6677777766 77789999999998888886    3332  222221111 1       1246


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEecC
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITSCN  211 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  211 (278)
                      .+|+++..-..             ...+....+.++|| |++++....
T Consensus        98 G~d~vie~~G~-------------~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          98 GVDYSLDCAGT-------------AQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             CBSEEEESSCC-------------HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             CCcEEEEeccc-------------chHHHHHHHHhhcCCeEEEecCCC
Confidence            78999863221             12337888999996 999887543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.28  E-value=0.00073  Score=51.18  Aligned_cols=108  Identities=16%  Similarity=0.094  Sum_probs=66.6

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-------ccCCCc
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-------KLERQF  166 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-------~~~~~f  166 (278)
                      +.+++.+||-+|||. |..+..+++. |..+|+++|.++.-++.|++.    |..  .++...-.+.       .....+
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~--~~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE--IADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE--EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc--EEEeCCCcCHHHHHHHHhCCCCc
Confidence            457899999999988 4555666654 777999999999999988863    322  1221111111       113468


Q ss_pred             cEEEeCCccceeccCCC--ChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          167 QLVMDKGTLDAIGLHPD--GPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       167 D~v~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      |+++..-..+.......  ........++.+.++++|||++++..
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            99886433221110000  00012235588999999999999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00035  Score=51.70  Aligned_cols=97  Identities=16%  Similarity=0.116  Sum_probs=63.1

Q ss_pred             ccCCCCeEEEEecCCCHH-HHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---------cCC
Q 023703           96 KYLSSWSVLDIGTGNGLL-LQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LER  164 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~-~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~  164 (278)
                      +..++.+||=+|||.... +..++.. |+.+|+++|.++.-++.|++.    |.+.  +...+-.+..         ...
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~~--~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GADL--VLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCSE--EEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCcc--cccccccccccccccccccCCC
Confidence            346788999999976543 3344443 776899999999999988763    3322  2222222110         135


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .+|+++..-.-             ...++.+.+++++||++++....
T Consensus        97 g~Dvvid~~G~-------------~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          97 KPEVTIECTGA-------------EASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CCSEEEECSCC-------------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CceEEEeccCC-------------chhHHHHHHHhcCCCEEEEEecC
Confidence            78998863321             12347889999999999987643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00035  Score=57.31  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=50.3

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  160 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~  160 (278)
                      .+.+|||||.|.|.++..+... +..+|+++|+++..++..++.+..   .++.++.+|...+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---SPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---SSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---CCcEEEeCchhhc
Confidence            4678999999999999999886 345899999999999999987642   4689999998764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.12  E-value=0.0002  Score=58.42  Aligned_cols=47  Identities=9%  Similarity=-0.027  Sum_probs=42.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  145 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~  145 (278)
                      .++..|||..||+|..+.+....| .+.+|+|+++..++.|++++...
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHhc
Confidence            578899999999999999999997 59999999999999999887654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.10  E-value=0.00032  Score=55.22  Aligned_cols=45  Identities=27%  Similarity=0.266  Sum_probs=41.7

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhh
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  143 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~  143 (278)
                      .+|..|||..||+|..+.+....| .+.+|+|+++..++.|++++.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            678899999999999999999987 699999999999999999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.01  E-value=0.0011  Score=49.12  Aligned_cols=95  Identities=17%  Similarity=0.147  Sum_probs=62.6

Q ss_pred             ccCCCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCcc
Q 023703           96 KYLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD  167 (278)
                      +..++.+||-+|||.-. .+..+++. |+..|+.+|.++.-++.+++.    |..  .++..+-.+..      .++.+|
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~--~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe--EEEeCCCcCHHHHHHHHcCCCCc
Confidence            45788999999987543 34444444 777889999999999988863    322  33333322221      145799


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|+..-.-             ...++.+.++++|+|++++..
T Consensus        99 ~vid~~G~-------------~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          99 FALESTGS-------------PEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEECSCC-------------HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEEcCCc-------------HHHHHHHHhcccCceEEEEEe
Confidence            98863221             123378889999999998864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00034  Score=51.93  Aligned_cols=94  Identities=17%  Similarity=0.283  Sum_probs=61.8

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc---cccCC----ccCC
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLDT----KLER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~---d~~~~----~~~~  164 (278)
                      .++.++.+||-.|+  |.|..+..+++. |+ +|++++.+++..+.+++    .|.+.  ++..   |..+.    ....
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~~--vi~~~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAHE--VFNHREVNYIDKIKKYVGEK   96 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSE--EEETTSTTHHHHHHHHHCTT
T ss_pred             hCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCccc--ccccccccHHHHhhhhhccC
Confidence            34568899999997  445666667765 65 89999989888887765    44332  2221   11111    1245


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+|+|+....              ...++...++|+|+|+++...
T Consensus        97 g~d~v~d~~g--------------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          97 GIDIIIEMLA--------------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             CEEEEEESCH--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CceEEeeccc--------------HHHHHHHHhccCCCCEEEEEe
Confidence            6999986321              123477889999999999864

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.95  E-value=0.0029  Score=51.26  Aligned_cols=71  Identities=14%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             eEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCcccee
Q 023703          102 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAI  178 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~~~~  178 (278)
                      +|||+.||.|.+...+...|+..+.++|+++.+++..+.|+.      -.+..+|+.+...  -...|+++...+-..+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------~~~~~~Di~~~~~~~~~~~dll~~g~PCq~f   74 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEFPKCDGIIGGPPCQSW   74 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------SEEEESCTTTSCGGGSCCCSEEEECCCCTTT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCCccCChhhCCHhHcccccEEeeccccccc
Confidence            799999999999998888888778899999999998888752      3567899988754  2568999876654433

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.83  E-value=0.0013  Score=53.71  Aligned_cols=72  Identities=11%  Similarity=0.072  Sum_probs=57.1

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc--CCCccEEEeCCcc
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTL  175 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~v~~~~~~  175 (278)
                      ..+.+|||+.||.|.++..|.+.|+..+.++|+++.+++..+.|+...       .++|+.+...  -..+|+++...+-
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~~~~Dll~ggpPC   81 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGSCCCSEEEEECCC
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhcceeeeeeccccc
Confidence            467899999999999999999999877888999999999999887321       2578777643  2468999876554


Q ss_pred             c
Q 023703          176 D  176 (278)
Q Consensus       176 ~  176 (278)
                      .
T Consensus        82 q   82 (327)
T d2c7pa1          82 Q   82 (327)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.75  E-value=0.00069  Score=53.95  Aligned_cols=47  Identities=17%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             CCCCeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC
Q 023703           98 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  145 (278)
Q Consensus        98 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~  145 (278)
                      .++..|||..||+|..+.+....| ++.+|+|+++..++.|++++...
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            578899999999999999998887 69999999999999999998754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.71  E-value=0.0013  Score=48.32  Aligned_cols=96  Identities=20%  Similarity=0.249  Sum_probs=62.2

Q ss_pred             ccCCCCeEEEEecC--CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCCC
Q 023703           96 KYLSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGcG--~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~  165 (278)
                      +..++.+||-+||+  .|..+..++.. |..+|+++|.++.-++.+++.    |.+  .++..+-.+..       ..+.
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD--YVINASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc--eeeccCCcCHHHHHHHHhhccc
Confidence            34688899999974  33445545444 767999999999998888864    322  22333322211       1356


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ||+++....-             ...++.+.++++|||++++...
T Consensus        98 ~d~vid~~g~-------------~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          98 VDAVIDLNNS-------------EKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             EEEEEESCCC-------------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             chhhhccccc-------------chHHHhhhhhcccCCEEEEecc
Confidence            9998864321             1222678899999999988753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0011  Score=48.74  Aligned_cols=96  Identities=17%  Similarity=0.234  Sum_probs=60.2

Q ss_pred             ccCCCCeEEEEecCC-CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--ccCCCccEEEe
Q 023703           96 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KLERQFQLVMD  171 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~v~~  171 (278)
                      +.+++.+||-+|||. |.++..+++. |+ +++++|.++.-.+.+++.    |.+  .++...-...  ...+.+|+++.
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Gad--~~i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD--EVVNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS--EEEETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CCc--EEEECchhhHHHHhcCCCceeee
Confidence            457889999999864 3455555654 65 778899999888877753    322  2222211111  12356998886


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      .-.-..             .+....++++|+|++++....
T Consensus       100 ~~g~~~-------------~~~~~~~~l~~~G~iv~~G~~  126 (168)
T d1uufa2         100 TVAAPH-------------NLDDFTTLLKRDGTMTLVGAP  126 (168)
T ss_dssp             CCSSCC-------------CHHHHHTTEEEEEEEEECCCC
T ss_pred             eeecch-------------hHHHHHHHHhcCCEEEEeccC
Confidence            422111             116778899999999987543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.32  E-value=0.004  Score=45.76  Aligned_cols=95  Identities=20%  Similarity=0.136  Sum_probs=62.0

Q ss_pred             cCCCCeEEEEecCCCHH-HHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC------ccCCCccE
Q 023703           97 YLSSWSVLDIGTGNGLL-LQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT------KLERQFQL  168 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~-~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~------~~~~~fD~  168 (278)
                      ..++.+||-+|||.... +..+++. |+..|+++|.++.-++.+++.    +..  .++..+-...      .....+|+
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~--~~i~~~~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD--HVVDARRDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS--EEEETTSCHHHHHHHHTTTCCEEE
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc--eeecCcccHHHHHHHhhCCCCceE
Confidence            46788999999976543 3445543 767899999999988888863    322  2333221111      01346898


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++..-.-             ...++...+.|+++|++++...
T Consensus       104 vid~~g~-------------~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         104 AMDFVGS-------------QATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEESSCC-------------HHHHHHGGGGEEEEEEEEECCC
T ss_pred             EEEecCc-------------chHHHHHHHHHhCCCEEEEEeC
Confidence            8864321             1123788999999999998754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.039  Score=43.09  Aligned_cols=76  Identities=14%  Similarity=0.247  Sum_probs=59.7

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc-ceEEEEccccCCc-----------cC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~~~~~~d~~~~~-----------~~  163 (278)
                      +++.+|-.|+++|   .++..|++.|+ +|+.+|.++..++.+.+.++..+.+ ++.++++|+.+..           ..
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            6789999999888   45667777886 8999999999999888877776543 5888899998752           13


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        88 g~iD~lVnnAg~   99 (257)
T d1xg5a_          88 SGVDICINNAGL   99 (257)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            679999987654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.27  E-value=0.015  Score=42.59  Aligned_cols=95  Identities=15%  Similarity=0.093  Sum_probs=60.2

Q ss_pred             ccCCCCeEEEEecCCC-HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccc-cCC-------ccCCC
Q 023703           96 KYLSSWSVLDIGTGNG-LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDT-------KLERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G-~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~-~~~-------~~~~~  165 (278)
                      +.+++.+||-.|||.. .++..+++. |+..|+++|.++.-.+.+++.    |.+  .++..+- .+.       ...+.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~--~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc--EEEeCCchhhHHHHHHHHHcCCC
Confidence            4578999999998732 344445554 777999999999999988864    322  2222211 111       11356


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      +|+|+..-.-             ...++.+..++++||.+++..
T Consensus        99 ~D~vid~~G~-------------~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          99 VDYSFECIGN-------------VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             BSEEEECSCC-------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEeeecCCC-------------HHHHHHHHHhhcCCceeEEEE
Confidence            8999864221             123377888899998776653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.27  E-value=0.0099  Score=43.70  Aligned_cols=96  Identities=17%  Similarity=0.080  Sum_probs=58.8

Q ss_pred             ccCCCCeEEEEecCCCHH-HHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC--------ccCCC
Q 023703           96 KYLSSWSVLDIGTGNGLL-LQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--------KLERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~-~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~--------~~~~~  165 (278)
                      +.+++.+||-+|||...+ +..+++. |+.+|+++|.++.-++.+++    .|..  .++...-.+.        ...+.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~--~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT--ECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc--EEEcCCCchhHHHHHHHHhcCCC
Confidence            457899999999976543 3344443 77799999999999999986    3322  2232211111        11356


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcc-cCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLV-APGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~  210 (278)
                      +|+++..-..            . ..+......+ +++|++++...
T Consensus        98 ~d~vid~~g~------------~-~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          98 VDYAVECAGR------------I-ETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             BSEEEECSCC------------H-HHHHHHHHTBCTTTCEEEECCC
T ss_pred             CcEEEEcCCC------------c-hHHHHHHHHHHHhcCceEEEEE
Confidence            8988864221            1 1124455555 55699888754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.20  E-value=0.02  Score=42.09  Aligned_cols=97  Identities=14%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             ccCCCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEE-ccccCC-------ccCCC
Q 023703           96 KYLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV-DDVLDT-------KLERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~-~d~~~~-------~~~~~  165 (278)
                      +.+++.+|+=+|||... .+..+++. |+.+|+++|.+++-++.|++.-.    .  .++. .|....       .....
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA----~--~~in~~~~~~~~~~~~~~~~g~G   99 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA----T--ECISPKDSTKPISEVLSEMTGNN   99 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC----S--EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC----c--EEECccccchHHHHHHHHhcccc
Confidence            35788999999997654 33344443 77799999999999999988532    1  2222 111111       12356


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +|+++....-            ...+...+..+++++|++++...
T Consensus       100 ~d~vi~~~g~------------~~~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         100 VGYTFEVIGH------------LETMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             CCEEEECSCC------------HHHHHHHHTTSCTTTCEEEECSC
T ss_pred             ceEEEEeCCc------------hHHHHHHHHHhhcCCeEEEEEEc
Confidence            8888763221            11111334445566699888753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0093  Score=43.85  Aligned_cols=94  Identities=18%  Similarity=0.156  Sum_probs=62.3

Q ss_pred             cccCCCCeEEEEecCC--CHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCC
Q 023703           95 DKYLSSWSVLDIGTGN--GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~  164 (278)
                      .+.+++.+||-.|+|+  |..+..+++. |+ +|++++.|+.-.+.+++.    |.+  .++..+-.++.       ...
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----Ga~--~vi~~~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW--QVINYREEDLVERLKEITGGK   96 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTTC
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----CCe--EEEECCCCCHHHHHHHHhCCC
Confidence            3456788999987665  5677777776 65 899999999999988763    322  22222112211       135


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      .+|+|+....-+              .+......++|+|++++..
T Consensus        97 g~d~v~d~~g~~--------------~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          97 KVRVVYDSVGRD--------------TWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             CEEEEEECSCGG--------------GHHHHHHTEEEEEEEEECC
T ss_pred             CeEEEEeCccHH--------------HHHHHHHHHhcCCeeeecc
Confidence            689888643321              1267888999999987754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.0015  Score=48.24  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=58.3

Q ss_pred             ccCCCCeEEEEec-C-CCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccC-CccCCCccEEEe
Q 023703           96 KYLSSWSVLDIGT-G-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKLERQFQLVMD  171 (278)
Q Consensus        96 ~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~v~~  171 (278)
                      +.+++.+||-.|. | .|..+..+++. |+ +|++++.++...+.+++    .|.+.+ +-..+... ......+|+|+.
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~g~D~v~d   97 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEEA-ATYAEVPERAKAWGGLDLVLE   97 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSEE-EEGGGHHHHHHHTTSEEEEEE
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----ccccee-eehhhhhhhhhcccccccccc
Confidence            4568889999884 3 34666667766 65 89999999988887765    443322 11111111 112467999886


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ... .          .    +....++|+|+|+++..
T Consensus        98 ~~G-~----------~----~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          98 VRG-K----------E----VEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             CSC-T----------T----HHHHHTTEEEEEEEEEC
T ss_pred             ccc-h----------h----HHHHHHHHhcCCcEEEE
Confidence            211 0          1    25678899999999875

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0039  Score=50.90  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=54.3

Q ss_pred             CCeEEEEecCCCHHHHHHhhCCCC--cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc----CCCccEEEeCC
Q 023703          100 SWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKG  173 (278)
Q Consensus       100 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~~  173 (278)
                      +.+|+|+.||.|.+...+...|..  -+.++|+++.+++..+.|+     ++..++..|+.+...    ....|+++...
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp   76 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence            358999999999999888776753  4779999999999888875     345667788876643    23689999877


Q ss_pred             ccceec
Q 023703          174 TLDAIG  179 (278)
Q Consensus       174 ~~~~~~  179 (278)
                      +-..+.
T Consensus        77 PCq~fS   82 (343)
T d1g55a_          77 PCQPFT   82 (343)
T ss_dssp             C-----
T ss_pred             cccccc
Confidence            655443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.86  E-value=0.027  Score=40.70  Aligned_cols=87  Identities=14%  Similarity=0.158  Sum_probs=55.4

Q ss_pred             eEEEEecC--CCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCccceec
Q 023703          102 SVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG  179 (278)
Q Consensus       102 ~vLDiGcG--~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  179 (278)
                      +|.=||+|  .+.++..+.+.|+ +|++.|.++..++.+++.    ++  +.....+..   .-...|+|+..-+     
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~----~~--~~~~~~~~~---~~~~~DiIilavp-----   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----QL--VDEAGQDLS---LLQTAKIIFLCTP-----   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TS--CSEEESCGG---GGTTCSEEEECSC-----
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh----hc--cceeeeecc---cccccccccccCc-----
Confidence            57778887  3345666767776 899999999988877652    21  111122221   1245788886433     


Q ss_pred             cCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          180 LHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       180 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                           +......++++...|+++.+++-.
T Consensus        67 -----~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          67 -----IQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             -----HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             -----Hhhhhhhhhhhhhhcccccceeec
Confidence                 235567778999988888865443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.83  E-value=0.0098  Score=43.19  Aligned_cols=94  Identities=13%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             ccCCCCeEEEEecCCC-HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCcc
Q 023703           96 KYLSSWSVLDIGTGNG-LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G-~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD  167 (278)
                      +.+++.+||-+|||.- ..+..+++. | .+|+++|.++.-++.+++    .|.+  .++..+-.+..      ..+.++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~g~~~   96 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK----LGAS--LTVNARQEDPVEAIQRDIGGAHG   96 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc----cCcc--ccccccchhHHHHHHHhhcCCcc
Confidence            4467889999998653 344445544 6 489999999999988876    3322  23332222211      122233


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .|++...              ...++.+.+.|+|+|++++...
T Consensus        97 ~i~~~~~--------------~~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2          97 VLVTAVS--------------NSAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             EEECCSC--------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             ccccccc--------------chHHHHHHHHhcCCcEEEEEEe
Confidence            4433221              1223778899999999988753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.83  E-value=0.023  Score=41.30  Aligned_cols=90  Identities=20%  Similarity=0.249  Sum_probs=56.5

Q ss_pred             eEEEEecCC-C-HHHHHHhhCCC-CcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcccee
Q 023703          102 SVLDIGTGN-G-LLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus       102 ~vLDiGcG~-G-~~~~~l~~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      +|+=||||. | .++..|.+.|. .+|+++|.++..++.+++.    +.  +.....+... ......|+|+..-+.   
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~--~~~~~~~~~~-~~~~~~dlIila~p~---   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--IDEGTTSIAK-VEDFSPDFVMLSSPV---   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--CSEEESCGGG-GGGTCCSEEEECSCH---
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc--chhhhhhhhh-hhccccccccccCCc---
Confidence            688899975 2 34555666664 3899999999999988863    21  2122222221 122356888864443   


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                             .....++.++...++++..+.-.
T Consensus        73 -------~~~~~vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          73 -------RTFREIAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             -------HHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             -------hhhhhhhhhhhcccccccccccc
Confidence                   25566778899999887655443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.76  E-value=0.0025  Score=47.27  Aligned_cols=96  Identities=14%  Similarity=0.119  Sum_probs=61.2

Q ss_pred             cCCCCeEEEEecCCC--HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC---ccCCCccEEE
Q 023703           97 YLSSWSVLDIGTGNG--LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVM  170 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G--~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~v~  170 (278)
                      ..++.+||--|.+.|  .++..+++. |+ +|+++.-++.-.+.+++.    |.+.+--...+..+.   ..++.+|+|+
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~gvD~vi  103 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQRWAAAV  103 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCCEEEEE
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccCcCEEE
Confidence            345778999886544  677777766 65 899999999988888763    332211111111111   1246799988


Q ss_pred             eCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          171 DKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      ..-.-+              .+....++|+|||+++.....
T Consensus       104 d~vgg~--------------~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         104 DPVGGR--------------TLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             ECSTTT--------------THHHHHHTEEEEEEEEECSCC
T ss_pred             EcCCch--------------hHHHHHHHhCCCceEEEeecc
Confidence            642211              137899999999999987543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.62  E-value=0.019  Score=42.29  Aligned_cols=95  Identities=14%  Similarity=0.152  Sum_probs=63.0

Q ss_pred             ccccCCCCeEEEEecCCC--HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cC
Q 023703           94 NDKYLSSWSVLDIGTGNG--LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LE  163 (278)
Q Consensus        94 ~~~~~~~~~vLDiGcG~G--~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~  163 (278)
                      ..+.+++.+||-.|++.|  ..+..+++. |+ +|++++-+++..+.+++    .|.+.  .+..+-.+..       ..
T Consensus        24 ~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~----~Ga~~--vi~~~~~~~~~~~~~~~~~   96 (182)
T d1v3va2          24 VCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFDA--AFNYKTVNSLEEALKKASP   96 (182)
T ss_dssp             TTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSE--EEETTSCSCHHHHHHHHCT
T ss_pred             HhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh----hhhhh--hcccccccHHHHHHHHhhc
Confidence            345678999998888654  566677776 64 89999999988877776    34322  2222222211       23


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..+|+|+..-.              ...++...++|+|+|.++...
T Consensus        97 ~Gvd~v~D~vG--------------~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          97 DGYDCYFDNVG--------------GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             TCEEEEEESSC--------------HHHHHHHGGGEEEEEEEEECC
T ss_pred             CCCceeEEecC--------------chhhhhhhhhccCCCeEEeec
Confidence            56999886321              123478999999999999863

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.60  E-value=0.064  Score=37.02  Aligned_cols=95  Identities=13%  Similarity=0.094  Sum_probs=57.5

Q ss_pred             eEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeC
Q 023703          102 SVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  172 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~  172 (278)
                      +|+=+|+  |.++..+++    .|. +|+.+|.++..++.++..+      ++.++.+|..+...     -...|.+++.
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            4555655  777776665    365 8999999999998776532      46788999987532     2567777763


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDE  216 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  216 (278)
                      ..-+          ....++....+.+.+.-. +....+....+
T Consensus        73 t~~d----------~~N~~~~~~~k~~~~~~i-I~~~~~~~~~~  105 (132)
T d1lssa_          73 TGKE----------EVNLMSSLLAKSYGINKT-IARISEIEYKD  105 (132)
T ss_dssp             CSCH----------HHHHHHHHHHHHTTCCCE-EEECSSTTHHH
T ss_pred             CCcH----------HHHHHHHHHHHHcCCceE-EEEecCHHHHH
Confidence            2211          122233445566777744 44434443333

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.58  E-value=0.09  Score=40.71  Aligned_cols=75  Identities=12%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  164 (278)
                      +++.+|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++.+|+.+..           ..+
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5678888887766   34556666786 899999999999988888877663 6888999998752           136


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        87 ~iDilvnnag~   97 (251)
T d2c07a1          87 NVDILVNNAGI   97 (251)
T ss_dssp             CCCEEEECCCC
T ss_pred             Cceeeeecccc
Confidence            89999987654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.44  E-value=0.023  Score=41.55  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=57.6

Q ss_pred             ccCCCCeEEEEecCCCH-HHHHHhh-CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEE-ccccCC-------ccCCC
Q 023703           96 KYLSSWSVLDIGTGNGL-LLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV-DDVLDT-------KLERQ  165 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~-~~~~l~~-~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~-~d~~~~-------~~~~~  165 (278)
                      +.+++.+||-+|+|.+. .+..++. .+..+|+++|.++.-.+.+++.    |..  ..+. .+..+.       ...+.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~~~~G   98 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT--ECVNPQDYKKPIQEVLTEMSNGG   98 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe--eEEecCCchhHHHHHHHHHhcCC
Confidence            45789999999997553 3333333 3767999999999999988764    322  2221 122121       12457


Q ss_pred             ccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCC-cEEEEEe
Q 023703          166 FQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPG-GLLVITS  209 (278)
Q Consensus       166 fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  209 (278)
                      +|+++......             ..++.+...++++ |.+++..
T Consensus        99 ~D~vid~~G~~-------------~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          99 VDFSFEVIGRL-------------DTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             BSEEEECSCCH-------------HHHHHHHHHBCTTTCEEEECS
T ss_pred             CCEEEecCCch-------------hHHHHHHHHHhcCCcceEEec
Confidence            99998743321             1125666777776 5555543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.40  E-value=0.024  Score=40.95  Aligned_cols=95  Identities=17%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             ccCCCCeEEEEecCCCHH-HHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cCCCcc
Q 023703           96 KYLSSWSVLDIGTGNGLL-LQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQ  167 (278)
Q Consensus        96 ~~~~~~~vLDiGcG~G~~-~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~~~fD  167 (278)
                      +..++.+||-.|||+-.. +..+++. |+ +|+++|.++.-++.+++    .|...  ++...-.+..      ..+.+|
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~----~Ga~~--~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGADL--VVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCSE--EECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh----cCcce--ecccccchhhhhcccccCCCce
Confidence            346888999999977643 3344444 55 89999999999888876    34321  1111111111      123344


Q ss_pred             EEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecC
Q 023703          168 LVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCN  211 (278)
Q Consensus       168 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  211 (278)
                      +|++...              ...+....++|+|+|++++....
T Consensus        97 ~v~~~~~--------------~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          97 AVVTAVS--------------KPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             EEESSCC--------------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             EEeecCC--------------HHHHHHHHHHhccCCceEecccc
Confidence            4433211              12337889999999999987543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.32  E-value=0.011  Score=43.53  Aligned_cols=93  Identities=15%  Similarity=0.116  Sum_probs=58.9

Q ss_pred             cccCCCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCC
Q 023703           95 DKYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LER  164 (278)
Q Consensus        95 ~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~  164 (278)
                      .+.+++.+||-.|.  |.|.++..+++. |+ ++++++-+++-.+.+++    .|.+.  ++...-.+..       ...
T Consensus        21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~~--vi~~~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          21 GRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVEY--VGDSRSVDFADEILELTDGY   93 (183)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCSE--EEETTCSTHHHHHHHHTTTC
T ss_pred             hCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----ccccc--cccCCccCHHHHHHHHhCCC
Confidence            34567889998773  445666677766 65 78888888877777764    44332  2222211111       135


Q ss_pred             CccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          165 QFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .+|+++..-.-              ..++.+.++|+++|+++..
T Consensus        94 g~d~v~d~~g~--------------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          94 GVDVVLNSLAG--------------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CEEEEEECCCT--------------HHHHHHHHTEEEEEEEEEC
T ss_pred             CEEEEEecccc--------------hHHHHHHHHhcCCCEEEEE
Confidence            79999963221              1236788999999999886

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.18  E-value=0.14  Score=39.94  Aligned_cols=75  Identities=13%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cC
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~  163 (278)
                      .+++.+|--|+++|   ..+..|++.|+ +|+.+|.++..++.+.+.+...+  .+.++.+|+.+..           ..
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46889999998877   35566777786 89999999998888877765443  5788899998752           12


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        81 g~iD~lVnnAG~   92 (268)
T d2bgka1          81 GKLDIMFGNVGV   92 (268)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcceecccccc
Confidence            678999977543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.91  E-value=0.068  Score=38.74  Aligned_cols=46  Identities=20%  Similarity=0.128  Sum_probs=34.9

Q ss_pred             cccCCCCeEEEEecCCCHHHHH-Hh-hCCCCcEEEEeCChHHHHHHHH
Q 023703           95 DKYLSSWSVLDIGTGNGLLLQE-LS-KQGFSDLTGVDYSEDAINLAQS  140 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G~~~~~-l~-~~~~~~v~~~D~s~~~i~~a~~  140 (278)
                      .+.+++.+||=+|||.+..... ++ ..+..+|+++|.++.-++.+++
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            3457889999999988644333 33 3366689999999999888876

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.07  Score=41.23  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cC
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~  163 (278)
                      ..|+.+|--|++.|   .++..+++.|+ +|+.+|.+++.++...+.+...+ .++..+.+|+.+..           ..
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            36788888899888   56777888886 89999999999998888887766 47889999998852           13


Q ss_pred             CCccEEEeCCccc
Q 023703          164 RQFQLVMDKGTLD  176 (278)
Q Consensus       164 ~~fD~v~~~~~~~  176 (278)
                      +..|+++.+....
T Consensus        83 g~idilinnag~~   95 (244)
T d1yb1a_          83 GDVSILVNNAGVV   95 (244)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCceeEeecccc
Confidence            6789988876553

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.77  E-value=0.034  Score=45.87  Aligned_cols=77  Identities=14%  Similarity=0.227  Sum_probs=52.8

Q ss_pred             CCCeEEEEecCCCHHHHHHhhC-C-------CCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEE
Q 023703           99 SSWSVLDIGTGNGLLLQELSKQ-G-------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  170 (278)
Q Consensus        99 ~~~~vLDiGcG~G~~~~~l~~~-~-------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~  170 (278)
                      +..+|+|+|+|+|.++..+... .       ..+++.+|.|+...+.-+++++..  .++.+ ..++...+  ...-+|+
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~--~~i~w-~~~~~~~~--~~~g~ii  153 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHW-HDSFEDVP--EGPAVIL  153 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEE-ESSGGGSC--CSSEEEE
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc--cccee-ccChhhcc--cCCeEEE
Confidence            3458999999999998776543 1       126899999999888887776532  34543 33343322  2235899


Q ss_pred             eCCccceecc
Q 023703          171 DKGTLDAIGL  180 (278)
Q Consensus       171 ~~~~~~~~~~  180 (278)
                      +|..+|++++
T Consensus       154 aNE~fDAlPv  163 (365)
T d1zkda1         154 ANEYFDVLPI  163 (365)
T ss_dssp             EESSGGGSCC
T ss_pred             ecccCccccc
Confidence            9999998874

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.12  Score=40.06  Aligned_cols=76  Identities=14%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++++|--|.+.|   ..+..+++.|+ +|+.+|.++..++.+.+.++..+ .++.++.+|+.+...           -
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g-~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            36788888887766   34556777786 89999999999998888887776 368889999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        87 g~iDilvnnAG~   98 (255)
T d1fmca_          87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEeeeCCcC
Confidence            689999987654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.45  E-value=0.059  Score=39.74  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             cccCCC--CeEEEEe--cCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------cC
Q 023703           95 DKYLSS--WSVLDIG--TGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LE  163 (278)
Q Consensus        95 ~~~~~~--~~vLDiG--cG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------~~  163 (278)
                      .+.+++  .+||-.|  .|.|..+..+++. |+..|+++..+++....+.+.   .+.+  .++...-.+..      .+
T Consensus        24 ~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~gad--~vi~~~~~~~~~~~~~~~~   98 (187)
T d1vj1a2          24 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGFD--AAVNYKTGNVAEQLREACP   98 (187)
T ss_dssp             SCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCCS--EEEETTSSCHHHHHHHHCT
T ss_pred             hCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccce--EEeeccchhHHHHHHHHhc
Confidence            334454  6799877  4667889999886 776788888777665544432   3322  22222211111      14


Q ss_pred             CCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          164 RQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      ..+|+|+..     +.         ...+....++|+|+|+++..
T Consensus        99 ~GvDvv~D~-----vG---------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          99 GGVDVYFDN-----VG---------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             TCEEEEEES-----SC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred             cCceEEEec-----CC---------chhHHHHhhhccccccEEEe
Confidence            569999853     21         12347899999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.39  E-value=0.086  Score=36.30  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=53.8

Q ss_pred             EEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeCC
Q 023703          103 VLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKG  173 (278)
Q Consensus       103 vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~~  173 (278)
                      ++=+  |.|.++..+++    .|. +|+.+|.++..++.++.    .   ....+.+|..+...     -...|.++..-
T Consensus         3 ~iIi--G~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~----~---~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           3 FAVI--GLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----Y---ATHAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             EEEE--CCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTT----T---CSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             EEEE--CCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHH----h---CCcceeeecccchhhhccCCccccEEEEEc
Confidence            4444  55666666655    465 89999999999887753    2   24567889887542     13567665421


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHH
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELV  218 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  218 (278)
                      +        ... ....+ ..+.+.+.|...++....+....+.+
T Consensus        73 ~--------~~~-~~~~~-~~~~~~~~~~~~iiar~~~~~~~~~l  107 (134)
T d2hmva1          73 G--------ANI-QASTL-TTLLLKELDIPNIWVKAQNYYHHKVL  107 (134)
T ss_dssp             C--------SCH-HHHHH-HHHHHHHTTCSEEEEECCSHHHHHHH
T ss_pred             C--------chH-HhHHH-HHHHHHHcCCCcEEeecccHhHHHHH
Confidence            1        111 11222 33333345666766665544443333

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.23  Score=38.67  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             CCeEEEE-ecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703          100 SWSVLDI-GTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus       100 ~~~vLDi-GcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      |++|.=| |+++|   .++..|++.+..+|+.++.++..++.+.+.++..+ .++.++.+|+.+...           .+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            5667444 55444   23345555433489999999999998888887776 368899999988531           26


Q ss_pred             CccEEEeCCccceeccCC-CChhh-----------HHHHHHHHHhcccCCcEEEEEec
Q 023703          165 QFQLVMDKGTLDAIGLHP-DGPLK-----------RIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       165 ~fD~v~~~~~~~~~~~~~-~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +.|+++.|.-+....... ....+           ...+.+.+...|+++|.++..+.
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            899999987553221111 11111           12445777888899999877643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.33  E-value=0.21  Score=38.55  Aligned_cols=75  Identities=15%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHh-hhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~-~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      +++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+ +..+ .++.++.+|+.+...           -
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5788999998877   45667788886 8999999988777665544 3334 357888999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+..+
T Consensus        82 g~iDiLVnnAG~   93 (251)
T d1vl8a_          82 GKLDTVVNAAGI   93 (251)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            679999987644

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.27  E-value=0.029  Score=40.65  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=60.3

Q ss_pred             CCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-CCCccEEEeCCcc
Q 023703           99 SSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  175 (278)
Q Consensus        99 ~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~  175 (278)
                      ++.+|+-||+|.-. .+...+.. | ++|+.+|.++..++..+..+..    ++++...+-..... -...|+|+..--+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~~~aDivI~aali  105 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLV  105 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence            56799999999754 44444444 6 4899999999999988876542    45554444322211 2457999974321


Q ss_pred             ceeccCCCChhhHHHHHHHHHhcccCCcEEEE
Q 023703          176 DAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVI  207 (278)
Q Consensus       176 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  207 (278)
                         + ....+.-.   -+++.+.+|||..++=
T Consensus       106 ---p-G~~aP~lI---t~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         106 ---P-GRRAPILV---PASLVEQMRTGSVIVD  130 (168)
T ss_dssp             ---T-TSSCCCCB---CHHHHTTSCTTCEEEE
T ss_pred             ---C-CcccCeee---cHHHHhhcCCCcEEEE
Confidence               1 11111111   1788999999986653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.10  E-value=0.14  Score=39.69  Aligned_cols=76  Identities=14%  Similarity=0.240  Sum_probs=58.9

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------------c
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------L  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------------~  162 (278)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+..            +
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            36889998898877   45667777886 89999999999998888887766 36888899998742            1


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .++.|+++.+...
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            2478999987544

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.09  E-value=0.13  Score=39.87  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=71.3

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEE-EeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------c
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTG-VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~-~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~  162 (278)
                      ..|++||--|.+.|   ..+..|++.|+ +|+. .+.++..++.+.+.+...+. ++.++.+|+.+..           .
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHH
Confidence            57889998887666   56667777787 5665 56778888888888887774 7889999998742           1


Q ss_pred             CCCccEEEeCCccceec-cCCCChhh-----------HHHHHHHHHhcccCCcEEEEE
Q 023703          163 ERQFQLVMDKGTLDAIG-LHPDGPLK-----------RIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~-~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .+..|+++.+....... +.....+.           ...+.+.+...|+.+|..++.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence            36789998876543221 11111111           124446666777777776554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.07  E-value=0.037  Score=40.96  Aligned_cols=98  Identities=10%  Similarity=0.105  Sum_probs=57.4

Q ss_pred             cccCCCCeEEEEecCCC---HHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEc---cccCCc------
Q 023703           95 DKYLSSWSVLDIGTGNG---LLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD---DVLDTK------  161 (278)
Q Consensus        95 ~~~~~~~~vLDiGcG~G---~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~---d~~~~~------  161 (278)
                      .+..++.+||=+.+|+|   ..+..+++. |+ +|+++--++...+...+.++..|.+.  ++..   |..+..      
T Consensus        24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~--vi~~~~~~~~~~~~~v~~~  100 (189)
T d1gu7a2          24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEW  100 (189)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHH
T ss_pred             hCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE--EEeccccchhHHHHHHHHH
Confidence            44567888888854444   556666666 76 78877555555555555555565433  2222   222211      


Q ss_pred             ---cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          162 ---LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       162 ---~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                         ..+.+|+++..     +.         ...+....++|+|+|+++...
T Consensus       101 ~~~~g~~vdvv~D~-----vg---------~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         101 IKQSGGEAKLALNC-----VG---------GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHTCCEEEEEES-----SC---------HHHHHHHHHTSCTTCEEEECC
T ss_pred             HhhccCCceEEEEC-----CC---------cchhhhhhhhhcCCcEEEEEC
Confidence               13568888853     21         112267789999999998753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.74  E-value=0.12  Score=40.10  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=59.3

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cC
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~  163 (278)
                      .+++++|--|.++|   ..+..|++.|+ +|+.+|.+++.++.+.+.+...+. ++..+.+|+.+..           .-
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36788998888777   35667788886 899999999999999888877763 6888999998752           12


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        81 g~iDilVnnaG~   92 (260)
T d1zema1          81 GKIDFLFNNAGY   92 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeehhhhcc
Confidence            679999977543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.70  E-value=0.27  Score=38.23  Aligned_cols=109  Identities=16%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC-hHHHHHHHHHhhhCCCcceEEEEccccCCc-----------c
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s-~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~  162 (278)
                      .+++++|--|++.|   .++..|++.|+ +|+.+|.+ +..++.+.+.+...+. ++.++.+|+.+..           .
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            46889999998877   46677888886 79999887 5666777666666663 6889999998742           1


Q ss_pred             CCCccEEEeCCccceec-cCCCChhh-----------HHHHHHHHHhcccCCcEEEEE
Q 023703          163 ERQFQLVMDKGTLDAIG-LHPDGPLK-----------RIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       163 ~~~fD~v~~~~~~~~~~-~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .++.|+++.+....... +.......           ...+.+.+...|+.+|..++.
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i  151 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  151 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence            26789988775443221 11111111           133456777778877776665

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.67  E-value=0.31  Score=33.12  Aligned_cols=96  Identities=10%  Similarity=-0.055  Sum_probs=61.9

Q ss_pred             cCCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeCCccceeccC
Q 023703          108 TGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDKGTLDAIGLH  181 (278)
Q Consensus       108 cG~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~~~~~~~~~~  181 (278)
                      ||.|..+..+++. ....++.+|.++..++.++.       .++.++.+|..+...     -.+.+.++....       
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~-------   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-------SGANFVHGDPTRVSDLEKANVRGARAVIVNLE-------   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS-------
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-------cCccccccccCCHHHHHHhhhhcCcEEEEecc-------
Confidence            5678889988886 12379999999998887654       257889999987531     245666665221       


Q ss_pred             CCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703          182 PDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       182 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  220 (278)
                        +.... ..+....+.+.|...++....+....+.+..
T Consensus        72 --~d~~n-~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~  107 (129)
T d2fy8a1          72 --SDSET-IHCILGIRKIDESVRIIAEAERYENIEQLRM  107 (129)
T ss_dssp             --SHHHH-HHHHHHHHHHCSSSCEEEECSSGGGHHHHHH
T ss_pred             --chhhh-HHHHHHHHHHCCCceEEEEEcCHHHHHHHHH
Confidence              11122 2224455667899888877766655555443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.37  Score=36.82  Aligned_cols=72  Identities=17%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  164 (278)
                      +++++|--|.+.|   ..+..+++.|+ +|+.+|.++..++...+.+.    .+...+.+|+.+..           .-+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG----ANGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC----CCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            5778888887776   45667777786 89999999988887766553    35678889998742           136


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        78 ~iDilVnnAg~   88 (243)
T d1q7ba_          78 EVDILVNNAGI   88 (243)
T ss_dssp             SCSEEEECCCC
T ss_pred             Ccceehhhhhh
Confidence            89999977543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.26  E-value=0.046  Score=39.67  Aligned_cols=92  Identities=24%  Similarity=0.326  Sum_probs=58.8

Q ss_pred             CCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC----ccCCCccEEEe
Q 023703           99 SSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMD  171 (278)
Q Consensus        99 ~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~fD~v~~  171 (278)
                      ++.+||--|+  |.|..+..+++. |+ +|+++.-+++-.+.+++.    |.+.+ +...|....    ...+.+|+|+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad~v-i~~~~~~~~~~~~~~~~gvd~vid   96 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GASEV-ISREDVYDGTLKALSKQQWQGAVD   96 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCSEE-EEHHHHCSSCCCSSCCCCEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----cccce-EeccchhchhhhcccCCCceEEEe
Confidence            4557887765  334667777776 75 899999998888888764    33322 222222111    12467898876


Q ss_pred             CCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          172 KGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      .     +.         -..+.+..++|+|+|++++...
T Consensus        97 ~-----vg---------g~~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2          97 P-----VG---------GKQLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             S-----CC---------THHHHHHHTTEEEEEEEEECCC
T ss_pred             c-----Cc---------HHHHHHHHHHhccCceEEEeec
Confidence            3     21         1133789999999999988753

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.19  E-value=0.18  Score=39.08  Aligned_cols=76  Identities=16%  Similarity=0.286  Sum_probs=59.1

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------------c
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------L  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------------~  162 (278)
                      .+++++|-.|+..|   ..+..+++.|+ +|+.++.++..++.+.+.+...+ .++.++.+|+.+..            .
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~-~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            36889999999877   45667778886 89999999999888888887776 36888899998752            1


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .+..|+++.+...
T Consensus        82 ~g~idilinnag~   94 (258)
T d1ae1a_          82 DGKLNILVNNAGV   94 (258)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             CCCcEEEeccccc
Confidence            2568888876543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.19  E-value=0.36  Score=37.15  Aligned_cols=107  Identities=15%  Similarity=0.128  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+   + .+..++.+|+.+...           -
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~   78 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G-ERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C-TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence            36788888887776   45666777786 8999999998887776554   2 356778899987521           2


Q ss_pred             CCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhccc-CCcEEEEEe
Q 023703          164 RQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVA-PGGLLVITS  209 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~Lk-pgG~l~~~~  209 (278)
                      ++.|+++.+....... +...+.++.           ..+.+.+...|+ .+|.++..+
T Consensus        79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is  137 (253)
T d1hxha_          79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA  137 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence            6789999876543221 111122222           223355555564 578877653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=93.18  E-value=0.41  Score=36.68  Aligned_cols=70  Identities=16%  Similarity=0.281  Sum_probs=51.0

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+|+++|--|++.|   ..+..|++.|+ +|+.+|.+++..+.+++.       +..++.+|+.+...           -
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~   74 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI-------GGAFFQVDLEDERERVRFVEEAAYAL   74 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-------CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence            46889999997776   45667777886 899999998877665432       34677899987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        75 G~iDiLVnnAG~   86 (248)
T d2d1ya1          75 GRVDVLVNNAAI   86 (248)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeEEEeCcC
Confidence            689999887543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.10  E-value=0.24  Score=38.28  Aligned_cols=74  Identities=15%  Similarity=0.124  Sum_probs=55.7

Q ss_pred             CCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCCC
Q 023703          100 SWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LERQ  165 (278)
Q Consensus       100 ~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  165 (278)
                      ++.+|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+...+. ++.++.+|+.+..           .-++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            445677777666   35566777786 899999999999988888877763 6889999998752           1367


Q ss_pred             ccEEEeCCcc
Q 023703          166 FQLVMDKGTL  175 (278)
Q Consensus       166 fD~v~~~~~~  175 (278)
                      .|+++.+...
T Consensus        80 iDilVnnAG~   89 (257)
T d2rhca1          80 VDVLVNNAGR   89 (257)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEecccc
Confidence            8999977543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.77  E-value=0.14  Score=37.79  Aligned_cols=75  Identities=11%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             cCCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc----cCCCccEE
Q 023703           97 YLSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLV  169 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~fD~v  169 (278)
                      ..++++||-.|++.|   .++..+++.|+ +|+.++.+++.++.+.+.+...  .++.+...|+.+..    .-+..|++
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKR--FKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHH--HTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhc--cchhhhhhhcccHHHHHHHhcCcCee
Confidence            357899999998777   45667778886 8999999998888777766543  23455666766532    23678999


Q ss_pred             EeCCc
Q 023703          170 MDKGT  174 (278)
Q Consensus       170 ~~~~~  174 (278)
                      +.+..
T Consensus        97 in~Ag  101 (191)
T d1luaa1          97 FTAGA  101 (191)
T ss_dssp             EECCC
T ss_pred             eecCc
Confidence            88754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=92.74  E-value=0.63  Score=33.30  Aligned_cols=97  Identities=11%  Similarity=0.083  Sum_probs=56.7

Q ss_pred             CeEEEEecCCCH--HHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCC-CcceEEEEccc--cCCcc--CCCccEEEeCC
Q 023703          101 WSVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDV--LDTKL--ERQFQLVMDKG  173 (278)
Q Consensus       101 ~~vLDiGcG~G~--~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~~~~~~d~--~~~~~--~~~fD~v~~~~  173 (278)
                      ++|.=||+|.-.  ++..|++.|+ +|+.+|.++.-++..++.-.... .+.........  .....  -...|+|+..-
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            578889998764  4555677786 89999999998887765421100 00011111000  00000  14578877532


Q ss_pred             ccceeccCCCChhhHHHHHHHHHhcccCCcEEEEE
Q 023703          174 TLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVIT  208 (278)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  208 (278)
                      .          ......+++++...|+++-.+++.
T Consensus        81 ~----------~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          81 P----------AIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             C----------GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             c----------hhHHHHHHHHhhhccCCCCEEEEe
Confidence            2          124566778999999998876544

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.26  Score=37.79  Aligned_cols=72  Identities=19%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-------cCCCcc
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------LERQFQ  167 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~fD  167 (278)
                      ..|+++|--|+++|   ..+..+++.|+ +|+.+|.++..++.+.+..     .++..++.|+.+..       .-++.|
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence            47889999998887   56677788886 8999999998877665543     35778889998752       136799


Q ss_pred             EEEeCCcc
Q 023703          168 LVMDKGTL  175 (278)
Q Consensus       168 ~v~~~~~~  175 (278)
                      +++.+...
T Consensus        79 ilVnnAg~   86 (244)
T d1pr9a_          79 LLVNNAAV   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99887644

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=92.62  E-value=0.15  Score=41.60  Aligned_cols=110  Identities=14%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             CeEEEEecCCCHHHHHHhhC------------C-----CCcEEEEeCChHHHHHHHHHhhhCCC--cc--eEEEEccccC
Q 023703          101 WSVLDIGTGNGLLLQELSKQ------------G-----FSDLTGVDYSEDAINLAQSLANRDGF--SC--IKFLVDDVLD  159 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~------------~-----~~~v~~~D~s~~~i~~a~~~~~~~~~--~~--~~~~~~d~~~  159 (278)
                      -+|.|+||.+|..++.+...            +     .-+|..-|....--...=+.+....-  ++  +.-+.+....
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            57999999999887544321            1     01566677655444333333222110  11  2233444444


Q ss_pred             C-ccCCCccEEEeCCccceeccCC-----------------CC---------hhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          160 T-KLERQFQLVMDKGTLDAIGLHP-----------------DG---------PLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       160 ~-~~~~~fD~v~~~~~~~~~~~~~-----------------~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      - -++++.|++++...++++.--|                 +.         ..+...+|+.=.+-|+|||+++++..
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~  210 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            2 2467889999988888764111                 11         13446788888889999999999753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.36  E-value=0.62  Score=35.41  Aligned_cols=108  Identities=21%  Similarity=0.190  Sum_probs=68.7

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++++|-.|++.|   ..+..|++.|+ +|+.++.+...++...+   ..+ .++.++++|+.+...           -
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVA---ALE-AEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---TCC-SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HcC-CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            46789999998877   45667777886 89999999987765544   333 367889999987521           2


Q ss_pred             CCccEEEeCCccceec-cCCCChhhH-----------HHHHHHHHhcccCCcEEEEEec
Q 023703          164 RQFQLVMDKGTLDAIG-LHPDGPLKR-----------IMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       164 ~~fD~v~~~~~~~~~~-~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      ++.|+++.+....... +...+....           ..+.+.+...++.++.+++.+.
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss  136 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS  136 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence            6799988875442221 111111111           2334556667777777766543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=92.34  E-value=0.14  Score=42.48  Aligned_cols=51  Identities=18%  Similarity=0.130  Sum_probs=41.9

Q ss_pred             cCCCCeEEEEecCCCHHHHHHhhC---CCCcEEEEeCChHHHHHHHHHhhhCCC
Q 023703           97 YLSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF  147 (278)
Q Consensus        97 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~~D~s~~~i~~a~~~~~~~~~  147 (278)
                      +.++..++|+|+-.|..+..++..   ...+|+++|+++...+..+++++.+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            457789999999999888776653   235899999999999999999876643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.15  E-value=0.3  Score=37.63  Aligned_cols=71  Identities=24%  Similarity=0.375  Sum_probs=53.6

Q ss_pred             EEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCCCccE
Q 023703          103 VLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LERQFQL  168 (278)
Q Consensus       103 vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~fD~  168 (278)
                      +|--|++.|   ..+..+++.|+ +|+.+|.++..++.+.+.+...+ .++.++.+|+.+..           .-++.|+
T Consensus         4 alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG-GHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            466677666   45566777786 89999999999998888887776 36888999998752           1368999


Q ss_pred             EEeCCcc
Q 023703          169 VMDKGTL  175 (278)
Q Consensus       169 v~~~~~~  175 (278)
                      ++.+..+
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9977543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.10  E-value=0.21  Score=38.91  Aligned_cols=76  Identities=17%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCcc----------
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL----------  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~~----------  162 (278)
                      .+++++|-.|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+...+..  ++.++.+|+.+...          
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            36788898888777   45667778886 8999999999999888888766543  48899999987521          


Q ss_pred             -CCCccEEEeCCc
Q 023703          163 -ERQFQLVMDKGT  174 (278)
Q Consensus       163 -~~~fD~v~~~~~  174 (278)
                       .++.|+++.+..
T Consensus        82 ~~g~iDilvnnAG   94 (272)
T d1xkqa_          82 QFGKIDVLVNNAG   94 (272)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCceEEEeCCc
Confidence             267899998754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.9  Score=34.54  Aligned_cols=75  Identities=17%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             CCCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------
Q 023703           98 LSSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------  161 (278)
                      .++++||--|+++  |   ..+..|++.|+ +|+.++.++...+.+.+.....+  .......|..+..           
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcC--CcceeecccchHHHHHHHHHHhhh
Confidence            4688999998866  5   36678888886 79999999888888877666654  3455666665531           


Q ss_pred             cCCCccEEEeCCcc
Q 023703          162 LERQFQLVMDKGTL  175 (278)
Q Consensus       162 ~~~~fD~v~~~~~~  175 (278)
                      ..+..|..+.+..+
T Consensus        80 ~~~~~d~~v~~a~~   93 (258)
T d1qsga_          80 VWPKFDGFVHSIGF   93 (258)
T ss_dssp             TCSSEEEEEECCCC
T ss_pred             cccccceEEEeecc
Confidence            13667888876433

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.21  E-value=0.59  Score=35.75  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=69.0

Q ss_pred             CCCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------
Q 023703           98 LSSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------  161 (278)
                      .+++++|--|+++  |   ..+..|++.|+ +|+.++.++...+.+++.....+  +..++.+|+.+..           
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHH
Confidence            4688999999754  4   46667888886 79999999887777766655543  4677889998752           


Q ss_pred             cCCCccEEEeCCccceec-----cCCCChhh-----------HHHHHHHHHhcccCCcEEEEEe
Q 023703          162 LERQFQLVMDKGTLDAIG-----LHPDGPLK-----------RIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~-----~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      ..++.|+++.+..+..-.     .......+           .....+.+...++.+|.++..+
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            126789888765432110     00011111           1233355666778888877653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.09  E-value=0.31  Score=37.98  Aligned_cols=75  Identities=21%  Similarity=0.260  Sum_probs=58.5

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~~-----------  162 (278)
                      +++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+...+..  ++.++.+|+.+...           
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            6788888888877   45667777886 8999999999999888887776543  58899999987531           


Q ss_pred             CCCccEEEeCCc
Q 023703          163 ERQFQLVMDKGT  174 (278)
Q Consensus       163 ~~~fD~v~~~~~  174 (278)
                      -++.|+++.+..
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            257899998754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.91  E-value=0.44  Score=36.35  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=52.3

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-------CCCccE
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQL  168 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-------~~~fD~  168 (278)
                      +|+++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+..     .++..+.+|+.+...       -++.|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence            6789998898777   35666777786 8999999988776665433     357788899987531       267899


Q ss_pred             EEeCCcc
Q 023703          169 VMDKGTL  175 (278)
Q Consensus       169 v~~~~~~  175 (278)
                      ++.+...
T Consensus        78 lVnnAg~   84 (242)
T d1cyda_          78 LVNNAAL   84 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9877543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.69  E-value=0.9  Score=34.43  Aligned_cols=72  Identities=13%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             EEEEecCCC---HHHHHHhhCCCC------cEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------c
Q 023703          103 VLDIGTGNG---LLLQELSKQGFS------DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------L  162 (278)
Q Consensus       103 vLDiGcG~G---~~~~~l~~~~~~------~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~  162 (278)
                      ||--|+++|   .++..|++.|+.      .|+.++.++..++.+.+.+...+ .++.++.+|+.+..           .
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-ALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            556677666   345566666752      39999999999998888777766 36888999998753           1


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      -++.|+++.+...
T Consensus        83 ~g~iDilvnnAg~   95 (240)
T d2bd0a1          83 YGHIDCLVNNAGV   95 (240)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             cCCcceeeccccc
Confidence            3679999987654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.48  E-value=0.36  Score=37.30  Aligned_cols=75  Identities=16%  Similarity=0.144  Sum_probs=58.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc------------cC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------LE  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~------------~~  163 (278)
                      +++++|--|+++|   ..+..+++.|+ +|+.+|.++..++.+.+.+...+ .++..+.+|+.+..            +.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG-FQVTGSVCDASLRPEREKLMQTVSSMFG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            6789999998877   36667778886 89999999999888888777665 36889999998642            13


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        85 g~idilvnnAG~   96 (259)
T d1xq1a_          85 GKLDILINNLGA   96 (259)
T ss_dssp             TCCSEEEEECCC
T ss_pred             CCcccccccccc
Confidence            678999887543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.25  E-value=0.41  Score=37.02  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCc--ceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~--~~~~~~~d~~~~~~-----------  162 (278)
                      +++.+|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+...+..  ++.++.+|+.+...           
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            6778888888777   45667777886 8999999999998888877766543  48899999987521           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      -++.|+++.+...
T Consensus        83 ~g~iDilvnnAG~   95 (264)
T d1spxa_          83 FGKLDILVNNAGA   95 (264)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             hCCCCEeeccccc
Confidence            2678999887543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=1.2  Score=30.97  Aligned_cols=102  Identities=9%  Similarity=0.017  Sum_probs=59.1

Q ss_pred             eEEEEecCCCHHHHHHhh----CCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----CCCccEEEeC
Q 023703          102 SVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQLVMDK  172 (278)
Q Consensus       102 ~vLDiGcG~G~~~~~l~~----~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~v~~~  172 (278)
                      +|+=+|+  |..+..+++    .|. +++.+|.++.......+....   .++.++.+|..+...     -++.|.++..
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~---~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc---CCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            5666666  555555544    454 799999998654433333222   357899999987531     2456777753


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHH
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVH  219 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  219 (278)
                      ..-         ... -..+....+-+.|...++....+....+.+.
T Consensus        79 ~~~---------d~~-n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~  115 (153)
T d1id1a_          79 SDN---------DAD-NAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK  115 (153)
T ss_dssp             SSC---------HHH-HHHHHHHHHHHTSSSCEEEECSSGGGHHHHH
T ss_pred             ccc---------HHH-HHHHHHHHHHhCCCCceEEEEcCHHHHHHHH
Confidence            221         112 2222445556678888777766555444443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.18  Score=36.65  Aligned_cols=90  Identities=20%  Similarity=0.286  Sum_probs=55.6

Q ss_pred             CCCeEEEEec--CCCHHHHHHhhC-CCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc---cCCCccEEEeC
Q 023703           99 SSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDK  172 (278)
Q Consensus        99 ~~~~vLDiGc--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v~~~  172 (278)
                      ++.+||-.|.  |.|..++.+++. |+ +|+++.-+++..+.+++.    |.+  .++..+-.+..   ....+|.++. 
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~l----Gad--~vi~~~~~~~~~~l~~~~~~~vvD-  102 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSL----GAS--RVLPRDEFAESRPLEKQVWAGAID-  102 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TEE--EEEEGGGSSSCCSSCCCCEEEEEE-
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhh----ccc--cccccccHHHHHHHHhhcCCeeEE-
Confidence            3447776653  234566667766 65 899999999988888753    322  22332222211   2355777753 


Q ss_pred             CccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          173 GTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                          .+.       .  ..+....+.|+++|+++...
T Consensus       103 ----~Vg-------g--~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2         103 ----TVG-------D--KVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             ----SSC-------H--HHHHHHHHTEEEEEEEEECC
T ss_pred             ----Ecc-------h--HHHHHHHHHhccccceEeec
Confidence                232       1  23478999999999999874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.42  Score=37.02  Aligned_cols=77  Identities=16%  Similarity=0.199  Sum_probs=57.0

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cC
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~  163 (278)
                      .+|+++|--|+++|   .++..+++.|+ +|+.++.+++.++.+.+.........+.+...|..+..           ..
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            36889999999888   56777888886 89999999999988876654443345777888877642           13


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      +..|+++.+...
T Consensus        91 g~~~~li~nag~  102 (269)
T d1xu9a_          91 GGLDMLILNHIT  102 (269)
T ss_dssp             TSCSEEEECCCC
T ss_pred             CCcccccccccc
Confidence            578888877544

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.69  E-value=0.59  Score=35.98  Aligned_cols=76  Identities=20%  Similarity=0.219  Sum_probs=57.2

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC-cceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-~~~~~~~~d~~~~~~-----------~  163 (278)
                      +++++|--|++.|   ..+..|++.|+ +|+.+|.+++.++.+.+.+...+. .++..+.+|+.+...           -
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5778898898877   46777888886 899999999988877766554432 257889999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+..+
T Consensus        82 G~iDiLVnnAG~   93 (258)
T d1iy8a_          82 GRIDGFFNNAGI   93 (258)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            679999987543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.68  E-value=0.64  Score=35.47  Aligned_cols=73  Identities=11%  Similarity=0.138  Sum_probs=55.1

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+.    .++.++.+|+.+...           .
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            46788999998877   45667778886 89999999988877766543    357888999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        79 g~idilinnAG~   90 (244)
T d1nffa_          79 GGLHVLVNNAGI   90 (244)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            678999987654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=89.64  E-value=0.43  Score=37.42  Aligned_cols=76  Identities=16%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhh-CCCcceEEEEccccCCc-----------c
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTK-----------L  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~~~~~~d~~~~~-----------~  162 (278)
                      .+++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+.. .+ .++.++.+|+.+..           .
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecccChHHHHHHhhhhhhh
Confidence            57889999998877   56667777786 899999999887766655433 33 35788899998752           1


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      .+..|+++.+...
T Consensus       101 ~g~iDilvnnAg~  113 (294)
T d1w6ua_         101 AGHPNIVINNAAG  113 (294)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             ccccchhhhhhhh
Confidence            3678998877544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.63  E-value=0.33  Score=35.34  Aligned_cols=43  Identities=21%  Similarity=0.172  Sum_probs=33.1

Q ss_pred             CCCeEEEEecCCCH-HHHHHhhC-CCCcEEEEeCChHHHHHHHHHh
Q 023703           99 SSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSLA  142 (278)
Q Consensus        99 ~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~~~D~s~~~i~~a~~~~  142 (278)
                      ++.+|+-||+|.-. .+...|.. |+ +|+.+|.++..++..++..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhh
Confidence            56799999999764 44444444 64 9999999999999888754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.60  E-value=0.41  Score=36.75  Aligned_cols=75  Identities=13%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++++|--|.+.|   ..+..|++.|+ +|+.+|.+++.++.+.+.+...  .++.++.+|+.+...           -
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36778888887776   45667777886 8999999999888887766432  368899999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        81 G~iDiLVnnAg~   92 (251)
T d1zk4a1          81 GPVSTLVNNAGI   92 (251)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            679999887644

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.65  Score=35.56  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=55.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-CCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .|+.+|--|++.|   ..+..+++.|+ +|+.+|.++..++.+.+.+... +-.++.++.+|+.+...           -
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            4678888888777   45666777786 8999999999888777766443 22358889999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        81 G~iDilVnnAg~   92 (254)
T d2gdza1          81 GRLDILVNNAGV   92 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcCeecccccc
Confidence            679999987654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.61  Score=35.71  Aligned_cols=72  Identities=15%  Similarity=0.158  Sum_probs=54.4

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++++|--|++.|   ..+..|++.|+ +|+.+|.+++.++...+..     .++.++.+|+.+...           -
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence            36889999998877   45667777886 8999999998887766543     357888999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        78 g~iDilVnnAG~   89 (250)
T d1ydea1          78 GRLDCVVNNAGH   89 (250)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            678999987653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.18  E-value=0.29  Score=37.81  Aligned_cols=75  Identities=12%  Similarity=0.072  Sum_probs=53.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHh-hhCCCcceEEEEccccCCc-----------cC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTK-----------LE  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~-~~~~~~~~~~~~~d~~~~~-----------~~  163 (278)
                      +++++|--|.+.|   ..+..|++.|+ +|+.+|.++..++.+.+.+ +..+ .++.++.+|+.+..           .-
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG-VKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC-CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6778999997766   35666777786 8999999987665544443 3344 36888999998752           13


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        86 g~iDilVnnAg~   97 (260)
T d1h5qa_          86 GPISGLIANAGV   97 (260)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCcEecccccc
Confidence            689998887544

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.07  E-value=0.12  Score=40.10  Aligned_cols=60  Identities=17%  Similarity=0.128  Sum_probs=41.7

Q ss_pred             eEEEEccccCC---ccCCCccEEEeCCccceeccCC---CC-hhhHHHHHHHHHhcccCCcEEEEEe
Q 023703          150 IKFLVDDVLDT---KLERQFQLVMDKGTLDAIGLHP---DG-PLKRIMYWDSVSKLVAPGGLLVITS  209 (278)
Q Consensus       150 ~~~~~~d~~~~---~~~~~fD~v~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~LkpgG~l~~~~  209 (278)
                      -.++++|..+.   -+++++|+|+.+++|..-.-..   .. .......+.++.++|||+|.+++..
T Consensus         5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            34677888774   2468999999999985322111   11 1234566789999999999998864

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.47  E-value=1.9  Score=32.52  Aligned_cols=72  Identities=17%  Similarity=0.130  Sum_probs=48.3

Q ss_pred             eEEEEecCCC---HHHHHHhhCCCCcEEEEeC-ChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------cCCCc
Q 023703          102 SVLDIGTGNG---LLLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LERQF  166 (278)
Q Consensus       102 ~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~-s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~f  166 (278)
                      .||--|++.|   ..+..|++.|+ +|+..|. ++..++.+.+.++..+ .++.++.+|+.+..           ..++.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYG-GQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHT-CEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            3444555554   34455666786 7877765 6777887777776666 36888999998752           13689


Q ss_pred             cEEEeCCcc
Q 023703          167 QLVMDKGTL  175 (278)
Q Consensus       167 D~v~~~~~~  175 (278)
                      |+++.+...
T Consensus        81 DiLVnnAg~   89 (244)
T d1edoa_          81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             Ccccccccc
Confidence            999887543

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=88.11  E-value=4.7  Score=31.35  Aligned_cols=107  Identities=9%  Similarity=0.038  Sum_probs=71.0

Q ss_pred             CeEEEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCC---cceEEEEccccCCcc----C-----CCccE
Q 023703          101 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKL----E-----RQFQL  168 (278)
Q Consensus       101 ~~vLDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~---~~~~~~~~d~~~~~~----~-----~~fD~  168 (278)
                      .-|+.+|||-=.-...+...+..+++=+|. |..++.-++.+...+.   .+..++..|+.+...    .     ..--+
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl  169 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  169 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence            357779999887776664332235666773 7777777777766543   246778888875311    1     22235


Q ss_pred             EEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCC
Q 023703          169 VMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNST  213 (278)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  213 (278)
                      +++-+++..+.     ......+++.+.....||+.+++...+..
T Consensus       170 ~i~EGvl~YL~-----~~~~~~ll~~i~~~~~~GS~l~~d~~~~~  209 (297)
T d2uyoa1         170 WLAEGLLMYLP-----ATAQDGLFTEIGGLSAVGSRIAVETSPLH  209 (297)
T ss_dssp             EEECSCGGGSC-----HHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             EEEccccccCC-----HHHHHHHHHHHHHhCCCCCEEEEEecccc
Confidence            56666655443     66788899999999999999998765443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=88.07  E-value=0.094  Score=40.26  Aligned_cols=60  Identities=17%  Similarity=0.097  Sum_probs=40.2

Q ss_pred             EEEEccccCCc---cCCCccEEEeCCccceecc---CCCChhh----HHHHHHHHHhcccCCcEEEEEec
Q 023703          151 KFLVDDVLDTK---LERQFQLVMDKGTLDAIGL---HPDGPLK----RIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       151 ~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~~---~~~~~~~----~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      +++++|..+.-   +++++|+|+.+++|..-..   ...+..+    ....++++.++|+|||.+++...
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~   75 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT   75 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC
Confidence            46788887742   4688999999999842211   1111222    23567889999999998876654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.10  E-value=1.4  Score=34.56  Aligned_cols=77  Identities=10%  Similarity=0.129  Sum_probs=56.1

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC----CCcceEEEEccccCCcc--------
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVDDVLDTKL--------  162 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~~~~~~d~~~~~~--------  162 (278)
                      .+++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+.+...    .-.++.++.+|+.+...        
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            47889999998877   34566777786 8999999998887776655432    11358889999987531        


Q ss_pred             ---CCCccEEEeCCcc
Q 023703          163 ---ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ---~~~fD~v~~~~~~  175 (278)
                         .++.|+++.+...
T Consensus        89 ~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          89 LDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCeEEEEeeccc
Confidence               2678999987543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.93  E-value=3.4  Score=31.34  Aligned_cols=75  Identities=16%  Similarity=0.076  Sum_probs=51.7

Q ss_pred             CCCCeEEEEecCC--C---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----------
Q 023703           98 LSSWSVLDIGTGN--G---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------  161 (278)
Q Consensus        98 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----------  161 (278)
                      .+++++|-.|++.  |   ..+..|++.|+ +|+.+|.++...+.+++.....  ....+...|+.+..           
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQEL--NSPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHT--TCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhC--CceeEeeecccchhhHHHHHHHHHH
Confidence            4688999999633  3   45667777786 8999999987666666655443  24566788887642           


Q ss_pred             cCCCccEEEeCCcc
Q 023703          162 LERQFQLVMDKGTL  175 (278)
Q Consensus       162 ~~~~fD~v~~~~~~  175 (278)
                      ..++.|+++.+...
T Consensus        80 ~~g~id~lV~nag~   93 (274)
T d2pd4a1          80 DLGSLDFIVHSVAF   93 (274)
T ss_dssp             HTSCEEEEEECCCC
T ss_pred             HcCCCCeEEeeccc
Confidence            13678888876543

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=86.86  E-value=1.5  Score=33.87  Aligned_cols=108  Identities=9%  Similarity=-0.023  Sum_probs=77.4

Q ss_pred             EEEecCCCHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCC-----ccCCCccEEEeCCcccee
Q 023703          104 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQFQLVMDKGTLDAI  178 (278)
Q Consensus       104 LDiGcG~G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~fD~v~~~~~~~~~  178 (278)
                      +..-+|+-.++..+.+.. .+.+.+|.-|.-.+..++++...  .++.+...|..+.     ++.++--+|+..++|+.-
T Consensus        87 l~~YPGSP~ia~~llR~~-Drl~l~ELHp~e~~~L~~~~~~~--~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k  163 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK  163 (271)
T ss_dssp             CCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST
T ss_pred             cCcCCCCHHHHHHhCCCC-CceEEeecCHHHHHHHHHHhccC--CCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCH
Confidence            467888888888888876 48999999999999998876543  4799999998763     344555689888888632


Q ss_pred             ccCCCChhhHHHHHHHHHhccc--CCcEEEEEecCCChHHHHHHH
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVA--PGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~  221 (278)
                             .+...+++.+.+.++  |.|++++=.+-..........
T Consensus       164 -------~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~  201 (271)
T d2oo3a1         164 -------EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFL  201 (271)
T ss_dssp             -------THHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHH
Confidence                   255555555666555  888888877665555444333

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=86.70  E-value=1  Score=34.45  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=54.2

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++++|--|.+.|   ..+..+++.|+ +|+.+|.+++.++...+.+   + .++.++.+|+.+...           -
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---G-DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---G-GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            36789999998887   45777788886 8999999998776655433   2 368899999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        78 g~iDilVnnAg~   89 (254)
T d1hdca_          78 GSVDGLVNNAGI   89 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCccEEEecCcc
Confidence            678998877544

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=86.17  E-value=1.3  Score=34.23  Aligned_cols=71  Identities=17%  Similarity=0.200  Sum_probs=52.9

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|--|+++|   ..+..|++.|+ +|+.+|.+++.++...+..   + .++..+.+|+.+...           -+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---G-DNVLGIVGDVRSLEDQKQAASRCVARFG   78 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CCeeEEecccccHHHHHHHHHHHHHHhC
Confidence            6788999998777   45667777886 8999999998877665543   2 368889999987521           26


Q ss_pred             CccEEEeCCc
Q 023703          165 QFQLVMDKGT  174 (278)
Q Consensus       165 ~fD~v~~~~~  174 (278)
                      +.|+++.+..
T Consensus        79 ~idilvnnAG   88 (276)
T d1bdba_          79 KIDTLIPNAG   88 (276)
T ss_dssp             CCCEEECCCC
T ss_pred             Cccccccccc
Confidence            7899887754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.13  E-value=0.95  Score=34.33  Aligned_cols=70  Identities=23%  Similarity=0.242  Sum_probs=51.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|--|++.|   ..+..|++.|+ +|+.+|.++..++.+.+..      +..++.+|+.+...           -+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV------GAHPVVMDVADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc------CCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence            5778999998877   45667777886 8999999998877765532      46778899987521           25


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        77 ~iDilVnnAG~   87 (242)
T d1ulsa_          77 RLDGVVHYAGI   87 (242)
T ss_dssp             SCCEEEECCCC
T ss_pred             CceEEEECCcc
Confidence            79998877543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.91  E-value=0.59  Score=35.96  Aligned_cols=75  Identities=12%  Similarity=0.181  Sum_probs=53.1

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCC-hHHHHHHHHHhhh-CCCcceEEEEccccCCcc-----------
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYS-EDAINLAQSLANR-DGFSCIKFLVDDVLDTKL-----------  162 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s-~~~i~~a~~~~~~-~~~~~~~~~~~d~~~~~~-----------  162 (278)
                      +++++|--|++.|   ..+..|++.|+ +|+.+|.+ +..++.+.+.+.. .+ .++.++.+|+.+...           
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHG-VKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHT-SCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            6778887787777   35667778886 89999986 5666666555433 33 368889999987521           


Q ss_pred             CCCccEEEeCCcc
Q 023703          163 ERQFQLVMDKGTL  175 (278)
Q Consensus       163 ~~~fD~v~~~~~~  175 (278)
                      -++.|+++.+...
T Consensus        81 ~G~iDiLVnnAG~   93 (260)
T d1x1ta1          81 MGRIDILVNNAGI   93 (260)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCcEEEeeccc
Confidence            2679999987544

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=85.40  E-value=1.1  Score=34.44  Aligned_cols=75  Identities=13%  Similarity=0.065  Sum_probs=55.0

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCCh-HHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      +++++|--|++.|   ..+..|++.|+ +|+.++.+. ..++.+.+.++..+. ++.++.+|+.+...           .
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6778888888777   45667777886 899999874 566766666666663 68889999987521           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        84 G~iDiLVnnAG~   95 (261)
T d1geea_          84 GKLDVMINNAGL   95 (261)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEeecccee
Confidence            678999887544

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=85.20  E-value=0.26  Score=38.93  Aligned_cols=61  Identities=18%  Similarity=0.130  Sum_probs=42.5

Q ss_pred             eEEEEccccCCc---cCCCccEEEeCCccceecc---CCCCh----hhHHHHHHHHHhcccCCcEEEEEec
Q 023703          150 IKFLVDDVLDTK---LERQFQLVMDKGTLDAIGL---HPDGP----LKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       150 ~~~~~~d~~~~~---~~~~fD~v~~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                      =.++++|..+..   +++++|+|+..++|....-   +....    ......+.++.++|+|+|.+++...
T Consensus        13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence            478899988632   4689999999999853211   11111    1234667999999999999998653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.81  E-value=1  Score=28.85  Aligned_cols=68  Identities=16%  Similarity=0.291  Sum_probs=39.4

Q ss_pred             CCCCeEEEEec-CCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCc
Q 023703           98 LSSWSVLDIGT-GNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  174 (278)
Q Consensus        98 ~~~~~vLDiGc-G~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  174 (278)
                      ...++|.=||. |+|  .++..|.+.|+ +|+|.|......-   +.+...|   +.+..+...+.  -...|+|+....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~---~~L~~~G---i~v~~g~~~~~--i~~~d~vV~S~A   76 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVT---QRLAQAG---AKIYIGHAEEH--IEGASVVVVSSA   76 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHH---HHHHHTT---CEEEESCCGGG--GTTCSEEEECTT
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhh---hHHHHCC---CeEEECCcccc--CCCCCEEEECCC
Confidence            34567888874 555  45667777787 8999998643221   1222334   44554444332  244688776554

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.81  E-value=1.3  Score=33.60  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=51.5

Q ss_pred             CCCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------C
Q 023703           98 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  163 (278)
Q Consensus        98 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~  163 (278)
                      .+++.+|--|.+.|   ..+..|++.|+ +|+.+|.++.  +.+....+..+ .++.++.+|+.+...           -
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g-~~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLG-RRVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcC-CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            36778888887776   45667777886 8999998764  22333344444 368889999987531           2


Q ss_pred             CCccEEEeCCcc
Q 023703          164 RQFQLVMDKGTL  175 (278)
Q Consensus       164 ~~fD~v~~~~~~  175 (278)
                      ++.|+++.+...
T Consensus        79 G~iDilVnnAG~   90 (247)
T d2ew8a1          79 GRCDILVNNAGI   90 (247)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            689999987544

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.73  E-value=1  Score=34.39  Aligned_cols=72  Identities=15%  Similarity=0.209  Sum_probs=53.8

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCcc-----------CC
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  164 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  164 (278)
                      +++++|--|+++|   ..+..|++.|+ +|+.+|.+++.++.+.+.+   + .++.++.+|+.+...           .+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~-~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   78 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G-PAACAIALDVTDQASIDRCVAELLDRWG   78 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            5778898898777   45667777886 8999999988777666544   3 367889999987531           26


Q ss_pred             CccEEEeCCcc
Q 023703          165 QFQLVMDKGTL  175 (278)
Q Consensus       165 ~fD~v~~~~~~  175 (278)
                      +.|+++.+...
T Consensus        79 ~iDilVnnAg~   89 (256)
T d1k2wa_          79 SIDILVNNAAL   89 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CccEEEeeccc
Confidence            79999987654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=82.85  E-value=3  Score=29.95  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=68.7

Q ss_pred             CeEEEEecCCCH--HHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------C-C---------cceEEEEccccCCc
Q 023703          101 WSVLDIGTGNGL--LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------G-F---------SCIKFLVDDVLDTK  161 (278)
Q Consensus       101 ~~vLDiGcG~G~--~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~-~---------~~~~~~~~d~~~~~  161 (278)
                      ++|--||+|+=.  ++..++..|+ +|+.+|.+++.++.+.++....       + .         .++.. ..+...  
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--   80 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGD--   80 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTT--
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccccc--
Confidence            368889987643  3445666786 7999999999998887764321       1 0         01111 122211  


Q ss_pred             cCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHHH
Q 023703          162 LERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHEV  221 (278)
Q Consensus       162 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  221 (278)
                       -...|+|+..-        +.+......++.++-+.++|+-++.-.+...+..++...+
T Consensus        81 -~~~adlViEav--------~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~  131 (186)
T d1wdka3          81 -FGNVDLVVEAV--------VENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKAL  131 (186)
T ss_dssp             -GGGCSEEEECC--------CSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGC
T ss_pred             -ccccceeeeee--------cchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhc
Confidence             12357777522        2334466678899999999999888877777776665544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=81.80  E-value=0.18  Score=35.75  Aligned_cols=94  Identities=15%  Similarity=0.081  Sum_probs=50.9

Q ss_pred             eEEEEecCC-C-HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEE-EccccCCccCCCccEEEeCCcccee
Q 023703          102 SVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL-VDDVLDTKLERQFQLVMDKGTLDAI  178 (278)
Q Consensus       102 ~vLDiGcG~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~-~~d~~~~~~~~~fD~v~~~~~~~~~  178 (278)
                      +|+=+|+|. | .++..|++.|+ +|+.++.++...+...    ..+....... ..........+.+|+|+..-.-   
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka---   73 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVN----LVETDGSIFNESLTANDPDFLATSDLLLVTLKA---   73 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEE----EECTTSCEEEEEEEESCHHHHHTCSEEEECSCG---
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhc----cccCCccccccccccchhhhhcccceEEEeecc---
Confidence            788899976 3 34555666776 8999998765221110    0010000000 0000001112567888753221   


Q ss_pred             ccCCCChhhHHHHHHHHHhcccCCcEEEEEec
Q 023703          179 GLHPDGPLKRIMYWDSVSKLVAPGGLLVITSC  210 (278)
Q Consensus       179 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  210 (278)
                             .+....++.+...++++..++....
T Consensus        74 -------~~~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          74 -------WQVSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             -------GGHHHHHHHHHTTSCTTSCEEEECS
T ss_pred             -------cchHHHHHhhccccCcccEEeeccC
Confidence                   1455666889999999887776643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.63  E-value=1.1  Score=28.23  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             CHHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCccCCCccEEEeCCcc
Q 023703          111 GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  175 (278)
Q Consensus       111 G~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~  175 (278)
                      +.++..|.++|+ .|.|.|..+...-   ++++..|+   .+..+.-.+  .-...|+|+....+
T Consensus        15 s~LA~~L~~~G~-~VsGSD~~~~~~t---~~L~~~Gi---~i~~gh~~~--~i~~~d~vV~SsAI   70 (89)
T d1j6ua1          15 SAVALHEFSNGN-DVYGSNIEETERT---AYLRKLGI---PIFVPHSAD--NWYDPDLVIKTPAV   70 (89)
T ss_dssp             HHHHHHHHHTTC-EEEEECSSCCHHH---HHHHHTTC---CEESSCCTT--SCCCCSEEEECTTC
T ss_pred             HHHHHHHHhCCC-eEEEEeCCCChhH---HHHHHCCC---eEEeeeccc--ccCCCCEEEEecCc
Confidence            356677778887 8999999874322   23555554   343332111  11346888766543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.07  E-value=2.8  Score=31.31  Aligned_cols=65  Identities=15%  Similarity=0.238  Sum_probs=46.4

Q ss_pred             CCCeEEEEecCCC---HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhCCCcceEEEEccccCCc-----cCCCccEEE
Q 023703           99 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVM  170 (278)
Q Consensus        99 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~~~~~~d~~~~~-----~~~~fD~v~  170 (278)
                      +++++|--|.++|   ..+..|++.|+ +|+.+|.+++.++..          ...+..+|+.+..     .-++.|+++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~~----------~~~~~~~Dv~~~~~~~~~~~g~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKRS----------GHRYVVCDLRKDLDLLFEKVKEVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHT----------CSEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHhc----------CCcEEEcchHHHHHHHHHHhCCCcEEE
Confidence            5778999998777   34566777786 899999998655422          2356778887642     136799988


Q ss_pred             eCCc
Q 023703          171 DKGT  174 (278)
Q Consensus       171 ~~~~  174 (278)
                      .+..
T Consensus        72 nnAG   75 (234)
T d1o5ia_          72 LNAG   75 (234)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            8754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.14  E-value=1.4  Score=32.05  Aligned_cols=108  Identities=17%  Similarity=0.179  Sum_probs=69.1

Q ss_pred             CeEEEEecCCC--HHHHHHhhCCCCcEEEEeCChHHHHHHHHHhhhC-------CCc---------------ceEEEEcc
Q 023703          101 WSVLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GFS---------------CIKFLVDD  156 (278)
Q Consensus       101 ~~vLDiGcG~G--~~~~~l~~~~~~~v~~~D~s~~~i~~a~~~~~~~-------~~~---------------~~~~~~~d  156 (278)
                      ++|.-||+|+=  .++..++..|+ +|+.+|.+++.++.++++....       +..               ++.+ ..|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-cch
Confidence            37888999764  34455666787 8999999999999888775431       110               1111 112


Q ss_pred             ccCCccCCCccEEEeCCccceeccCCCChhhHHHHHHHHHhcccCCcEEEEEecCCChHHHHHH
Q 023703          157 VLDTKLERQFQLVMDKGTLDAIGLHPDGPLKRIMYWDSVSKLVAPGGLLVITSCNSTKDELVHE  220 (278)
Q Consensus       157 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  220 (278)
                      ..+  .-...|+|+..     +   +++......+++++.+.++++.++.-.+...+..++...
T Consensus        83 ~~~--a~~~ad~ViEa-----v---~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~  136 (192)
T d1f0ya2          83 AAS--VVHSTDLVVEA-----I---VENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANA  136 (192)
T ss_dssp             HHH--HTTSCSEEEEC-----C---CSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTT
T ss_pred             hHh--hhcccceehhh-----c---ccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhh
Confidence            111  01335777753     2   234446678889999999999888777777776655553