Citrus Sinensis ID: 023724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MAPMYLNPAQDHSDPFRLAEAQKRDHQRLQIDQRIAGGGSSDLQSSMSQPKTMTNKLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHcccEEEccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccEEEHccEEEEccccHHHHccccccHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mapmylnpaqdhsdpfRLAEAQKRDHQRLQIDqriagggssdlqssmsqpktmtNKLAIRRrevgegstsdnssytssssgesmSSKMRLANKIinsssvstgthdESVKVAEKLLHehdnievhyfttnssnsnntvricsdcnttttplwrsgprgpkslcnacGIRQRKARKAMQAAAEsgtttakdnssfSKIKlqnnmekkprtshvaqykkvqcntpdpdpphheyrsqrkLCFKDFAlslssnsalkqvfpRDVEEAAILLMELSCGFSHT
Flexible Loop (DISEMBL)
mapmylnpaqdhsdPFRLAEAQKRDHQRLQIDqriagggssdlqssmsqpkTMTNKLAIrrrevgegstsdnssytssssgesmSSKMRLANKIInsssvstgthDESVKVAEKLLHEHDNIEVHyfttnssnsnntVRICSDCNTtttplwrsgprgpkslCNACGIRQRKARKAMQAAAesgtttakdnssfskiklqnnmekkprtshVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Low Complexity Region (SEG)
MAPMYLNPAQDHSDPFRLAEAQKRDHQRLQIDQRIAGGGSSDLQSSMSQPKTMTNKLAIRRREVGEGstsdnssytssssgesmssKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFttnssnsnntVRICSDCNTTTTPLWRSGPRGPKSLCNACGIrqrkarkamqaaaESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Disordered region (IsUnstruct)
****************************************************************************************************************EKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWR********LCNACG*********************************************************************KLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCG****
Disordered Region (DISOPRED)
*APMYLN***************************************************************************************************************************************DCNTTTTPLWRSGPRGPKSLCNACGIRQ*********************************************************************************************AAILLMELSCGFSHT
Disordered Region (DISEMBL)
********AQDHSDPFRLAEAQKRDHQRLQIDQRIAG****************TNKLAIRRR*************************MRLANKIINSS*********SVKVAEKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGI************************SFSKIKLQNN************YKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Disordered Region (DISPRO)
*APMY**PAQDHS*PFRL*********************************************************************************************************************NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESG**************************************************QRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPMYLNPAQDHSDPFRLAEAQKRDHQRLQIDQRIAGGGSSDLQSSMSQPKTMTNKLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q9SZI6	352	Putative GATA transcripti	yes	no	0.507	0.400	0.443	6e-22
Q5HZ36	398	GATA transcription factor	no	no	0.521	0.364	0.384	6e-18
Q8LC59	120	GATA transcription factor	no	no	0.183	0.425	0.568	7e-13
Q9FJ10	139	GATA transcription factor	no	no	0.169	0.338	0.595	3e-12
Q8LG10	149	GATA transcription factor	no	no	0.208	0.389	0.517	1e-11
Q6QPM2	211	GATA transcription factor	no	no	0.194	0.255	0.551	1e-11
Q8VZP4	308	GATA transcription factor	no	no	0.169	0.152	0.595	3e-11
Q6DBP8	303	GATA transcription factor	no	no	0.169	0.155	0.595	6e-11
Q8LC79	295	GATA transcription factor	no	no	0.154	0.145	0.651	6e-11
Q9LIB5	190	GATA transcription factor	no	no	0.147	0.215	0.682	7e-11

>sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=2 SV=1

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 93/169 (55%), Gaps = 28/169 (16%)

Query: 130 NSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAE----SGT 185
           N  N++  +RICSDCNTT TPLWRSGPRGPKSLCNACGIRQRKAR+A  A A     SG 
Sbjct: 190 NGYNNDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMATATATAVSGV 249

Query: 186 TTAKDNSS--------------FSKIKLQNNMEKKPRT---SHVAQYKKVQCNTPDPDPP 228
           +                      S + L+ N  K+  T   + +A+  + Q N+      
Sbjct: 250 SPPVMKKKMQNKNKISNGVYKILSPLPLKVNTCKRMITLEETALAEDLETQSNST----- 304

Query: 229 HHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSH 277
                S   + F D AL LS +SA +QVFP+D +EAAILLM LS G  H
Sbjct: 305 --MLSSSDNIYFDDLALLLSKSSAYQQVFPQDEKEAAILLMALSHGMVH 351

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ36|GAT21_ARATH GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 87/177 (49%), Gaps = 32/177 (18%)

Query: 27  QRLQIDQRIAGGGSSDLQSSMSQPKTMTNKLAIRRREVGEGSTSDNSSYT---SSSSGES 83
           Q L+    +A GGSS     + + +T   KL IR+++  +     + + T   S S    
Sbjct: 88  QPLKAKMFVANGGSSACDHMVPKKETRL-KLTIRKKDHEDQPHPLHQNPTKPDSDSDKWL 146

Query: 84  MSSKMRLANKIINSS-----SVSTGTHDESVKVA-------EKLLHEHDNI--------- 122
           MS KMRL  K I ++       +   H ES           ++  HE  N          
Sbjct: 147 MSPKMRLIKKTITNNKQLIDQTNNNNHKESDHYPLNHKTNFDEDHHEDLNFKNVLTRKTT 206

Query: 123 ----EVHYFTTNS---SNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
               E  Y T N    SN+N  +R+CSDCNTT TPLWRSGPRGPKSLCNACGIRQRK
Sbjct: 207 AATTENRYNTINENGYSNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 263

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC59|GAT23_ARATH GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 35/51 (68%)

Query: 126 YFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 176
           Y +        T+R CS+C TT TP+WR GP GPKSLCNACGIR RK R++
Sbjct: 13  YVSVRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRS 63

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ10|GAT16_ARATH GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query: 130 NSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 176
           N+++ N+  + C+DC T+ TPLWR GP GPKSLCNACGIR RK R+ 
Sbjct: 27  NNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG 73

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG10|GAT15_ARATH GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 120 DNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAM 177
           D IE H  ++++   +N  + C+ C T+ TPLWR GP GPKSLCNACGIR RK R+ +
Sbjct: 22  DAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTL 79

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 4/58 (6%)

Query: 135 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIR----QRKARKAMQAAAESGTTTA 188
           N   R C++C+TT+TPLWR+GPRGPKSLCNACGIR    +R+A  A  + +  G+T A
Sbjct: 71  NLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTARNSTSGGGSTAA 128

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZP4|GAT10_ARATH GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 33/47 (70%)

Query: 128 TTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 174
           T  SS S+  VRIC+ C T TTP WR GP GPK+LCNACG+R +  R
Sbjct: 207 TLESSKSDGIVRICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGR 253

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 33/47 (70%)

Query: 128 TTNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 174
           T  +SNS+  VR C+ C TT TP WR GP GPK+LCNACG+R R  R
Sbjct: 209 TLEASNSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGR 255

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAA 180
            R C++C+TT+TPLWR+GPRGPKSLCNACGIR +K  +   AA
Sbjct: 151 ARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAA 193

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIB5|GAT17_ARATH GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 31/41 (75%)

Query: 136 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 176
           +T R C DC T  TPLWR GP GPKSLCNACGI+ RK R+A
Sbjct: 39  DTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQA 79

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
118487597	303	unknown [Populus trichocarpa]	0.913	0.838	0.444	4e-43
224088836	234	predicted protein [Populus trichocarpa]	0.823	0.978	0.475	5e-41
255550794	186	conserved hypothetical protein [Ricinus	0.661	0.989	0.538	1e-35
118489347	303	unknown [Populus trichocarpa x Populus d	0.877	0.805	0.465	1e-34
356554076	306	PREDICTED: putative GATA transcription f	0.755	0.686	0.449	1e-34
225429550	306	PREDICTED: putative GATA transcription f	0.809	0.735	0.410	4e-34
118488977	306	unknown [Populus trichocarpa x Populus d	0.482	0.437	0.659	6e-34
255546095	312	hypothetical protein RCOM_1046780 [Ricin	0.938	0.836	0.387	2e-33
147805325	211	hypothetical protein VITISV_032017 [Viti	0.719	0.947	0.432	2e-29
356556282	315	PREDICTED: putative GATA transcription f	0.690	0.609	0.409	1e-28

>gi|118487597|gb|ABK95624.1| unknown [Populus trichocarpa]

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/272 (44%), Positives = 156/272 (57%), Gaps = 18/272 (6%)

Query: 9   AQDHSDPFRLAEAQKRDHQRLQIDQRIAGGGSSDLQSSMSQPKTMTNKLAIRRREVGEGS 68
           A DH    +  E+++ D+Q + +     GG SS  Q     P+   +        +    
Sbjct: 48  AHDHQRETKPGESRQHDNQEVDMYNISHGGSSSSFQ-----PEVNDHNYNSNFHNLSSSK 102

Query: 69  TSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFT 128
             D +  +  SS + M SKMRL  K+ NS+   T            +L  H+    +   
Sbjct: 103 MEDGAEESGESSVKWMPSKMRLMQKMTNSNCSETDHMPMKF-----MLKFHNQQYQNNEI 157

Query: 129 TNSSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK--ARKAMQAAAESGTT 186
            +SSNSN+ +R+CSDCNTT+TPLWRSGPRGPKSLCNACGIRQRK     A  AAA +GT 
Sbjct: 158 NSSSNSNSNIRVCSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAANGTV 217

Query: 187 TAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALS 246
            A + SS ++    NN  KK RT+HV+Q KK+        PP    +SQ+KLCFK+ ALS
Sbjct: 218 IAIEASSSTRSTKVNNKVKKSRTNHVSQNKKLS------KPPESSLQSQKKLCFKNLALS 271

Query: 247 LSSNSALKQVFPRDVEEAAILLMELSCGFSHT 278
           LS N AL+QV P DVEEAAILLMELSCGF H+
Sbjct: 272 LSKNPALQQVLPHDVEEAAILLMELSCGFIHS 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088836|ref|XP_002308561.1| predicted protein [Populus trichocarpa] gi|222854537|gb|EEE92084.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/246 (47%), Positives = 146/246 (59%), Gaps = 17/246 (6%)

Query: 35  IAGGGSSDLQSSMSQPKTMTNKLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKI 94
           I+ GGSS    S  QP+   +        +      D +  +  SS + M SKMRL  K+
Sbjct: 4   ISHGGSS----SSFQPEVNDHNYNSNFHNLSSSKMEDGAEESGESSVKWMPSKMRLMQKM 59

Query: 95  INSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNNTVRICSDCNTTTTPLWRS 154
            NS+   T            +L  H+    +    +SSNSN+ +R+CSDCNTT+TPLWRS
Sbjct: 60  TNSNCSETDHMPMKF-----MLKFHNQQYQNNEINSSSNSNSNIRVCSDCNTTSTPLWRS 114

Query: 155 GPRGPKSLCNACGIRQRK--ARKAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHV 212
           GPRGPKSLCNACGIRQRK     A  AAA +GT  A + SS ++    NN  KK RT+HV
Sbjct: 115 GPRGPKSLCNACGIRQRKARRAMAAAAAAANGTVIAIEASSSTRSTKVNNKVKKSRTNHV 174

Query: 213 AQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELS 272
           +Q KK+        PP    +SQ+KLCFK+ ALSLS N AL+QV P DVEEAAILLMELS
Sbjct: 175 SQNKKLS------KPPESSLQSQKKLCFKNLALSLSKNPALQQVLPHDVEEAAILLMELS 228

Query: 273 CGFSHT 278
           CGF H+
Sbjct: 229 CGFIHS 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550794|ref|XP_002516445.1| conserved hypothetical protein [Ricinus communis] gi|223544265|gb|EEF45786.1| conserved hypothetical protein [Ricinus communis]

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 131/195 (67%), Gaps = 11/195 (5%)

Query: 84  MSSKMRLANKIINSSSVSTGTHDESVKVAEKLL-HEHDNIEVHYFTTNSSNSNNTVRICS 142
           M SKMR+  K++NS+      +D+ VK   K   H+      +   ++ SN NN +R+CS
Sbjct: 1   MPSKMRIMQKMMNSNCFEF--NDKPVKFTVKFQDHQQYQATNNEINSSCSNGNNNIRVCS 58

Query: 143 DCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIKLQNN 202
           DCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR+AM AAA     T+   +  +K+K    
Sbjct: 59  DCNTTTTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAIAMETSSTKA--AKVK---- 112

Query: 203 MEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVE 262
            EKK RT H +Q KK+ C  PD  PP +    + K+ FK+ ALSLS+NSAL++VFP DVE
Sbjct: 113 -EKKSRTGHASQCKKL-CKPPDHPPPPYNQGQKPKVSFKNLALSLSNNSALQRVFPEDVE 170

Query: 263 EAAILLMELSCGFSH 277
           EAA LLMELSCGF H
Sbjct: 171 EAATLLMELSCGFIH 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489347|gb|ABK96478.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/262 (46%), Positives = 158/262 (60%), Gaps = 18/262 (6%)

Query: 21  AQKRDHQRLQIDQR-IAGGGSSD---LQSSMSQPKTMTNKLAIRRREVGEGSTSDNSSYT 76
           A+ R H   ++D+  I+ G SSD     SS  QP    +       ++    T D +  +
Sbjct: 56  AESRQHDDHEVDKYSISLGRSSDHKLFPSSSFQPVVNDDDDDSNFHKLFSSKTEDGTEGS 115

Query: 77  SSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNN 136
             SS   M S+M    ++ NS+        E+     K + +  N +       +S+SN+
Sbjct: 116 GDSSVNWMPSRMTTMQEMSNSN------RSETDHQPMKFMLKFHNQQCQN-NDINSSSNS 168

Query: 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSK 196
            +R+CSDCNTT+TPLWRSGPRGPKSLCNACGIRQRKAR+A  AAAE+G   + + SS S 
Sbjct: 169 NIRVCSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKARRA-MAAAENGAVISVEASS-ST 226

Query: 197 IKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQV 256
               N+  KK RTSHV Q KK+  N P P+PP    +SQ+KLCFK+ ALSLS N AL+QV
Sbjct: 227 KSKVNSKVKKLRTSHVVQGKKLS-NKP-PNPP---LQSQKKLCFKNLALSLSKNPALRQV 281

Query: 257 FPRDVEEAAILLMELSCGFSHT 278
            P DVEEAAILLMELSCGF H+
Sbjct: 282 LPHDVEEAAILLMELSCGFIHS 303

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554076|ref|XP_003545375.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 135/227 (59%), Gaps = 17/227 (7%)

Query: 58  AIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLH 117
           A  RR +     S N+ +   S  + MSSKMRL  K++  S   + T D+++  + +   
Sbjct: 89  ACDRRNLPSEEESKNNDH--GSGNKWMSSKMRLMKKMMRPSI--SPTTDKAINSSPRF-Q 143

Query: 118 EHDNIEVHYFTTNSSNSNN---TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 174
            H  +E   ++  S  +NN   T R+CSDCNT+TTPLWR+GP+GPKSLCNACGIRQRKAR
Sbjct: 144 NHQGLESRRYSQRSPRNNNGSSTPRVCSDCNTSTTPLWRTGPKGPKSLCNACGIRQRKAR 203

Query: 175 KAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYK-KVQCNTPDPDPPHHEYR 233
           +AM  AA    T      +  K +L N  EKK R +H AQ+K K +  T           
Sbjct: 204 RAMAEAANGLVTPI----ACEKTRLHNK-EKKSRMNHFAQFKNKYKSTTTTTTTTVGSSE 258

Query: 234 SQRKL-CFKDFALSL-SSNSALKQVFPRD-VEEAAILLMELSCGFSH 277
             RKL  F +FA+SL S+NS  +Q+FPRD V EAA+LLM+LSCGF H
Sbjct: 259 GVRKLEYFNNFAISLRSNNSDFEQMFPRDEVAEAALLLMDLSCGFVH 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429550|ref|XP_002279283.1| PREDICTED: putative GATA transcription factor 22 [Vitis vinifera] gi|296081660|emb|CBI20665.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/256 (41%), Positives = 146/256 (57%), Gaps = 31/256 (12%)

Query: 32  DQRIAGGGSSDLQ----SSMSQPKTMTNK----LAIRRREVGEGSTSDNSSYTSSSSGES 83
           D+ I+ GG  + Q    SS+ QP    NK    L++ ++E G+        +        
Sbjct: 73  DKYISHGGCGESQVFSSSSLLQPMADDNKSSHKLSVFKKEEGDEGNKSTEKW-------- 124

Query: 84  MSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNNTVRICSD 143
           MSSKMRL  K++NS   +        K+ +K+        ++ F ++++ SN  +R+CSD
Sbjct: 125 MSSKMRLMRKMMNSDCTT-------AKIEQKVEDHQQWDNINEFNSSNNTSNIPIRVCSD 177

Query: 144 CNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKIKLQ-NN 202
           CNTT TPLWRSGPRGPKSLCNACGIRQRKAR+AM AAA +        +  S +K++  N
Sbjct: 178 CNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAAANGTAVGTEISPMKMKLPN 237

Query: 203 MEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVFPRDVE 262
            EKK  TS+V Q KK+               +++KLCF+DF  S+  NS  ++VFPRD E
Sbjct: 238 KEKKMHTSNVGQQKKLCKPP-------CPPPTEKKLCFEDFTSSICKNSGFRRVFPRDEE 290

Query: 263 EAAILLMELSCGFSHT 278
           EAAILLM LSC   ++
Sbjct: 291 EAAILLMALSCDLVYS 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488977|gb|ABK96296.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 108/141 (76%), Gaps = 7/141 (4%)

Query: 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNSSFSKI 197
           +R+CSDCNTT+TPLWRSGPRGPKSLCNACGIRQRKAR+A  AAAE+G   + + SS S  
Sbjct: 173 IRVCSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKARRA-MAAAENGAVISVEASS-STK 230

Query: 198 KLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSALKQVF 257
              N+  KK RTSHV Q KK+  N P P+PP    +SQ+KLCFK+ ALSLS N  L+QV 
Sbjct: 231 SKVNSKVKKLRTSHVVQGKKLS-NKP-PNPP---LQSQKKLCFKNLALSLSKNPVLRQVL 285

Query: 258 PRDVEEAAILLMELSCGFSHT 278
           P DVEEAAILLMELSCGF H+
Sbjct: 286 PHDVEEAAILLMELSCGFIHS 306

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546095|ref|XP_002514107.1| hypothetical protein RCOM_1046780 [Ricinus communis] gi|223546563|gb|EEF48061.1| hypothetical protein RCOM_1046780 [Ricinus communis]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/281 (38%), Positives = 157/281 (55%), Gaps = 20/281 (7%)

Query: 3   PMYLNPAQDHSDPFRLAEAQKRDHQRLQIDQRIAGGGSSDLQSSMSQPKTMTNKLAIRRR 62
           P+++NP Q+    +   E Q   HQ  ++D   A  G S     +        +L++ ++
Sbjct: 45  PIFINPPQEEVGYYH-KELQPLHHQ--EVDNIYASHGRSWDHRIIKNENENGQELSVCKK 101

Query: 63  EVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSS-SVSTGTHDESV-KVAEKLLHEHD 120
           E    S  D      +SS + MSSKMRL  K++ +  +V+T  H  S+ K+ +K      
Sbjct: 102 EDKSTSIEDQRD---NSSVKWMSSKMRLMRKMMTTDQTVNTTQHTSSMHKLEDKEKSRSL 158

Query: 121 NIEVHYFTTN-SSNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGI--RQRKARKAM 177
            ++  Y + N S NSNNT+R+CSDCNTT TPLWRSGPRGPKSLCNACGI  R+ +   A 
Sbjct: 159 PLQDDYSSKNLSDNSNNTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAA 218

Query: 178 QAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRK 237
             A+ +GT  A D ++    K+QN  EK+   SH+   K+ +              S++K
Sbjct: 219 AQASANGTIFAPDTAAMKTNKVQNK-EKRTNNSHLPFKKRCKFTA-------QSRGSRKK 270

Query: 238 LCFKDFALS-LSSNSALKQVFPRDVEEAAILLMELSCGFSH 277
           LCF+D + + LS NSA +Q+FP+D +EAAILLM LS G  H
Sbjct: 271 LCFEDLSSTILSKNSAFQQLFPQDEKEAAILLMALSYGLVH 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805325|emb|CAN63090.1| hypothetical protein VITISV_032017 [Vitis vinifera]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/229 (43%), Positives = 134/229 (58%), Gaps = 29/229 (12%)

Query: 54  TNKLAIRRREVGEGSTSDNSSYTSSSSGESMSSKMRLANKIINSSSVSTGTHDESVKVAE 113
           ++KL++ ++E G+        +        MSSKMRL  K++NS        D +    E
Sbjct: 8   SHKLSVFKKEEGDEGNKSTEKW--------MSSKMRLMRKMMNS--------DCTTAKIE 51

Query: 114 KLLHEHDNIEVHYFTTNSSNSNNT-VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
           + + +H   +      +S+N++N  +R+CSDCNTT TPLWRSGPRGPKSLCNACGIRQRK
Sbjct: 52  QKVEDHQQWDNINEXNSSNNTSNIPIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 111

Query: 173 ---ARKAMQAAAESGTTTAKDNSSFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPH 229
              A  A  AAA +GT    + S   K+KL N  EKK  TS+V Q KK+         P 
Sbjct: 112 ARRAMAAAAAAAANGTAVGTEISPM-KMKLPNK-EKKMHTSNVGQQKKLC-------KPP 162

Query: 230 HEYRSQRKLCFKDFALSLSSNSALKQVFPRDVEEAAILLMELSCGFSHT 278
               +++KLCF+DF  S+  NS  ++VFPRD EEAAILLM LSC   ++
Sbjct: 163 CPPPTEKKLCFEDFTSSICKNSGFRRVFPRDEEEAAILLMALSCDLVYS 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556282|ref|XP_003546455.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 13/205 (6%)

Query: 80  SGESMSSKMRLANKIINSSSVSTGTHDESVKVAEKLLHEHDNIEVHYFTTNSSNSNN--- 136
           S + M  KMR+  +++ S    +   +  +  ++K+ +E  N  +    T+ SN N+   
Sbjct: 108 STKWMPLKMRMMRRLMVSDQTGSDDTEGMISNSQKIKYEEKNSPLSPLGTDDSNYNSSSN 167

Query: 137 ----TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAAAESGTTTAKDNS 192
               TVR+CSDC+TT TPLWRSGP+GPKSLCNACGIRQRK R+A+ AAA S  T   + +
Sbjct: 168 HSNITVRVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKVRRAIAAAATSNGTNPVE-A 226

Query: 193 SFSKIKLQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSNSA 252
             S++K  N +  K   S     ++++ N          YR +R   F+D  + LS N A
Sbjct: 227 EKSQVKKGNTLHSKGMKSKTEGAQQMKKNR----KLGARYR-KRFGAFEDLTVRLSKNFA 281

Query: 253 LKQVFPRDVEEAAILLMELSCGFSH 277
           L+QVFP+D +EAAILLM LS G  H
Sbjct: 282 LQQVFPQDEKEAAILLMALSYGLLH 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2170277	398	GNC "GATA, nitrate-inducible,	0.111	0.077	0.903	5.1e-23
TAIR|locus:2120845	352	CGA1 "cytokinin-responsive gat	0.503	0.397	0.415	1.3e-20
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.111	0.258	0.741	2.4e-14
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.107	0.215	0.733	3.9e-12
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.201	0.375	0.482	5.5e-12
TAIR|locus:2093678	190	GATA17 "GATA transcription fac	0.474	0.694	0.326	4.5e-11
TAIR|locus:504955441	197	AT4G16141 [Arabidopsis thalian	0.107	0.152	0.733	6.1e-11
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.334	0.315	0.356	9.6e-10
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.107	0.142	0.8	1.1e-09
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.107	0.144	0.766	4.1e-09

TAIR|locus:2170277 GNC "GATA, nitrate-inducible, carbon metabolism-involved" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
 Identities = 28/31 (90%), Positives = 30/31 (96%)

Query:   138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGI 168
             +R+CSDCNTT TPLWRSGPRGPKSLCNACGI
Sbjct:   229 IRVCSDCNTTKTPLWRSGPRGPKSLCNACGI 259

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010255 "glucose mediated signaling pathway" evidence=IMP

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP;IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2120845 CGA1 "cytokinin-responsive gata factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 64/154 (41%), Positives = 78/154 (50%)

Query:   138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGI----XXXXXXXXXXXXXESGTTTAKDNSS 193
             +RICSDCNTT TPLWRSGPRGPKSLCNACGI                  SG +       
Sbjct:   198 IRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMATATATAVSGVSPPVMKKK 257

Query:   194 F-SKIKLQNNMEK--KPRTSHVAQYKKV-----QCNTPDPDPPHHE--YRSQRKLCFKDF 243
               +K K+ N + K   P    V   K++          D +   +     S   + F D 
Sbjct:   258 MQNKNKISNGVYKILSPLPLKVNTCKRMITLEETALAEDLETQSNSTMLSSSDNIYFDDL 317

Query:   244 ALSLSSNSALKQVFPRDVEEAAILLMELSCGFSH 277
             AL LS +SA +QVFP+D +EAAILLM LS G  H
Sbjct:   318 ALLLSKSSAYQQVFPQDEKEAAILLMALSHGMVH 351

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 23/31 (74%), Positives = 26/31 (83%)

Query:   138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGI 168
             +R CS+C TT TP+WR GP GPKSLCNACGI
Sbjct:    25 IRCCSECKTTKTPMWRGGPTGPKSLCNACGI 55

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
 Identities = 22/30 (73%), Positives = 25/30 (83%)

Query:   139 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 168
             + C+DC T+ TPLWR GP GPKSLCNACGI
Sbjct:    36 KTCADCGTSKTPLWRGGPVGPKSLCNACGI 65

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
 Identities = 27/56 (48%), Positives = 30/56 (53%)

Query:   113 EKLLHEHDNIEVHYFXXXXXXXXXXVRICSDCNTTTTPLWRSGPRGPKSLCNACGI 168
             E  L   D IE H             + C+ C T+ TPLWR GP GPKSLCNACGI
Sbjct:    15 ESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGI 70

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2093678 GATA17 "GATA transcription factor 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 48/147 (32%), Positives = 65/147 (44%)

Query:   139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIXXXXXXXXXXXX-XESGTTTAKDNSSFSKI 197
             R C DC T  TPLWR GP GPKSLCNACGI              E      K N + + +
Sbjct:    42 RTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCN-NDL 100

Query:   198 KLQNNMEKKPRTSHVAQYK-------KVQCNTPDPDPPHHEYRSQRKLCFKDFALSLSSN 250
              L +   KK + + V   K       K+ CN           +   K     F + +   
Sbjct:   101 NLDHRNAKKYKINIVDDGKIDIDDDPKI-CNNKRSSSSSSN-KGVSKFLDLGFKVPVMKR 158

Query:   251 SAL--KQVFPR--DVEEAAILLMELSC 273
             SA+  K+++ +  + E AA+LLM LSC
Sbjct:   159 SAVEKKRLWRKLGEEERAAVLLMALSC 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:504955441 AT4G16141 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
 Identities = 22/30 (73%), Positives = 24/30 (80%)

Query:   139 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 168
             + C DC T+ TPLWR GP GPKSLCNACGI
Sbjct:    37 KTCVDCGTSRTPLWRGGPAGPKSLCNACGI 66

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 9.6e-10, P = 9.6e-10
 Identities = 36/101 (35%), Positives = 50/101 (49%)

Query:   139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIXXXXXXXXXXXXXESGTTTAKDNSSFSKIK 198
             R C++C+TT+TPLWR+GPRGPKSLCNACGI             E  TT A  N+      
Sbjct:   152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKE--------ERRTTAATGNTVVGAAP 203

Query:   199 LQNNMEKKPRTSHVAQYKKVQCNTPDPDPPHHEYRSQRKLC 239
             +Q +      + +   +     N  +  P  H + +QR  C
Sbjct:   204 VQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHSTQRVPC 244

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 24/30 (80%), Positives = 29/30 (96%)

Query:   139 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 168
             R C++C+TT+TPLWR+GPRGPKSLCNACGI
Sbjct:    75 RRCANCDTTSTPLWRNGPRGPKSLCNACGI 104

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 23/30 (76%), Positives = 28/30 (93%)

Query:   139 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 168
             R C+ C+TT+TPLWR+GP+GPKSLCNACGI
Sbjct:    92 RRCASCDTTSTPLWRNGPKGPKSLCNACGI 121

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0013019801 SubName- Full=Putative uncharacterized protein; (234 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	1e-16
pfam00320	36	pfam00320, GATA, GATA zinc finger	7e-16
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	6e-13

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 72.1 bits (177), Expect = 1e-16
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 136 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAMQAA 180
            + R CS+C TT TPLWR GP G K+LCNACG+  +K     +  
Sbjct: 1   GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPL 45

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 69.2 bits (170), Expect = 7e-16
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 141 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 175
           CS+C TT TPLWR GP G ++LCNACG+  RK   
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGL 35

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 62.0 bits (151), Expect = 6e-13
 Identities = 21/33 (63%), Positives = 25/33 (75%)

Query: 140 ICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
            CS+C TTTTPLWR GP G  +LCNACG+  +K
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKK 33

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.46
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.45
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.44
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.67
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.79
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	84.6

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.46  E-value=2.3e-14  Score=104.25  Aligned_cols=38  Identities=55%  Similarity=1.104  Sum_probs=34.4

Q ss_pred             ccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhhh
Q 023724          140 ICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAM  177 (278)
Q Consensus       140 ~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~~  177 (278)
                      .|+||++++||+||+||.|..+|||||||||++....+
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~r   38 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMR   38 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCCCC
Confidence            59999999999999999888999999999999887443

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.45  E-value=2.1e-14  Score=96.49  Aligned_cols=35  Identities=57%  Similarity=1.230  Sum_probs=27.9

Q ss_pred             cccCCCCCCCccccCCCCCcccchHHHHHHHHhhh
Q 023724          141 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  175 (278)
Q Consensus       141 CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k  175 (278)
                      |++|+|++||+||++|.|..+|||||||+|++.+.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999988899999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.44  E-value=2.9e-14  Score=102.66  Aligned_cols=40  Identities=55%  Similarity=1.098  Sum_probs=36.8

Q ss_pred             CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhh
Q 023724          137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  176 (278)
Q Consensus       137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~  176 (278)
                      ..+.|++|++++||+||+||.|+.+|||||||+|++....
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            4689999999999999999999889999999999987765

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.67  E-value=6.7e-09  Score=86.82  Aligned_cols=37  Identities=68%  Similarity=1.399  Sum_probs=35.2

Q ss_pred             CcccccCCCCCCCccccCCCCCcccchHHHHHHHHhh
Q 023724          138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR  174 (278)
Q Consensus       138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~  174 (278)
                      ...|.+|+++.||+||+++.|+..+|||||++|++..
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~  235 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGG  235 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcC
Confidence            5899999999999999999999999999999999885

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.79  E-value=4.1e-06  Score=84.06  Aligned_cols=39  Identities=44%  Similarity=0.983  Sum_probs=33.6

Q ss_pred             CcccccCCCCCCCccccCCC-----CCcccchHHHHHHHHhhhhh
Q 023724          138 VRICSDCNTTTTPLWRSGPR-----GPKSLCNACGIRQRKARKAM  177 (278)
Q Consensus       138 ~~~CsnC~tt~TP~WRrGP~-----G~~~LCNACGL~yrK~~k~~  177 (278)
                      ..+|.||.|+.||+|||+..     | -+|||||||+|+-....+
T Consensus       158 ~~vc~Nc~t~stPlwrR~~~~~s~~~-n~lcnaCgl~~klhg~~r  201 (498)
T COG5641         158 PHVCSNCKTTSTPLWRRASSESSLPG-NNLCNACGLYLKLHGSPR  201 (498)
T ss_pred             cchhccccccCCccccccccccccCC-ccccccccccccccCCcC
Confidence            45999999999999999999     6 689999999996655444

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=84.60  E-value=0.7  Score=47.63  Aligned_cols=41  Identities=29%  Similarity=0.509  Sum_probs=34.2

Q ss_pred             CCCcccccCCCCCCCcc--ccCCCCCcccchHHHHHHHHhhhh
Q 023724          136 NTVRICSDCNTTTTPLW--RSGPRGPKSLCNACGIRQRKARKA  176 (278)
Q Consensus       136 ~~~~~CsnC~tt~TP~W--RrGP~G~~~LCNACGL~yrK~~k~  176 (278)
                      ...+.|-+|+|++.-+|  ..+|+-...||-.|=++|+|...+
T Consensus       384 ~~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  384 QDGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCCCcccccccccccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            34789999999999999  556666678999999999997653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	278
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		3e-04

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 141 CSDCNTTTTPLWRSGPRGPKSLCNACGI 168
           C++C T TTPLWR  P G + LCNACG+
Sbjct: 4   CTNCFTQTTPLWRRNPEG-QPLCNACGL 30

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-13
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	1e-12
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	8e-11
3dfx_A	63	Trans-acting T-cell-specific transcription factor	5e-09
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 132 SNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
           S+ N     CS+C+ T T  WR+        CNAC I QRK
Sbjct: 2   SHMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRK 42

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 60.1 bits (146), Expect = 1e-12
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
           R C +C  T TPLWR    G   LCNACG+  + 
Sbjct: 5   RECVNCGATATPLWRRDRTG-HYLCNACGLYHKM 37

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 55.2 bits (133), Expect = 8e-11
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
             C++C T TTPLWR  P G + LCNACG+  + 
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKL 34

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 50.8 bits (121), Expect = 5e-09
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 132 SNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
           S +      C++C TTTT LWR    G   +CNACG+  + 
Sbjct: 1   SAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKL 40

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 50.4 bits (120), Expect = 8e-09
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 132 SNSNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
           +   N    C++C T TTPLWR  P G + LCNACG+  + 
Sbjct: 3   NGEQNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKL 42

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 15/106 (14%)

Query: 167 GIRQRKARKAMQAAAESGTTTAKDNSSF--SKIKLQNNMEKKPRTSHVAQYKKVQCNTPD 224
                K  + +Q   E      + N  F  S IK +          ++ Q  ++  N   
Sbjct: 69  WTLLSKQEEMVQKFVEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQ 124

Query: 225 PDPPHHEYRSQRKLCFKDFALSLSSNSAL---------KQVFPRDV 261
               ++  R Q  L  +   L L     +         K     DV
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.62
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.57
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.56
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.54
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.51
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.31
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.18

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.62  E-value=2.2e-16  Score=117.61  Aligned_cols=42  Identities=36%  Similarity=0.783  Sum_probs=37.6

Q ss_pred             CCCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhh
Q 023724          134 SNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  176 (278)
Q Consensus       134 s~~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~  176 (278)
                      +......|++|+|++||+||+||+|+ +|||||||+|++.+..
T Consensus         3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~   44 (63)
T 3dfx_A            3 ARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNIN   44 (63)
T ss_dssp             CCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSC
T ss_pred             CCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCC
Confidence            45678899999999999999999997 9999999999887643

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.57  E-value=6.2e-16  Score=107.46  Aligned_cols=37  Identities=46%  Similarity=0.997  Sum_probs=33.6

Q ss_pred             cccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhh
Q 023724          139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  176 (278)
Q Consensus       139 ~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~  176 (278)
                      +.|++|++++||+||+||+|+ +|||||||||++.+..
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   38 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV   38 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence            579999999999999999996 9999999999876643

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.56  E-value=1.4e-15  Score=107.12  Aligned_cols=38  Identities=42%  Similarity=0.957  Sum_probs=34.4

Q ss_pred             CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhh
Q 023724          137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  175 (278)
Q Consensus       137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k  175 (278)
                      ..+.|++|++++||+||+||+|+ +|||||||||++...
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~   40 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ   40 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence            46889999999999999999996 999999999987653

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.54  E-value=1.8e-15  Score=113.45  Aligned_cols=40  Identities=45%  Similarity=0.930  Sum_probs=36.3

Q ss_pred             CCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhh
Q 023724          136 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA  176 (278)
Q Consensus       136 ~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~  176 (278)
                      +..+.|++|+|++||+||+||+|. +|||||||||++....
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~   46 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV   46 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC
Confidence            568999999999999999999996 9999999999876643

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.51  E-value=2.4e-15  Score=114.38  Aligned_cols=43  Identities=40%  Similarity=0.560  Sum_probs=33.7

Q ss_pred             CCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhhh
Q 023724          135 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAM  177 (278)
Q Consensus       135 ~~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~~  177 (278)
                      ......|+||+|++||+||+|+.+..+|||||||||++....+
T Consensus         5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~R   47 (71)
T 2kae_A            5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTR   47 (71)
T ss_dssp             ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCC
T ss_pred             CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCCC
Confidence            4568999999999999999954444489999999998876543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.31  E-value=6.3e-13  Score=108.31  Aligned_cols=42  Identities=36%  Similarity=0.771  Sum_probs=37.4

Q ss_pred             CCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhhh
Q 023724          135 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAM  177 (278)
Q Consensus       135 ~~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~~  177 (278)
                      ......|++|+|++||+||+||+| .+|||||||||++....+
T Consensus        56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~r   97 (115)
T 4hc9_A           56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINR   97 (115)
T ss_dssp             CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCC
T ss_pred             ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCC
Confidence            345789999999999999999999 899999999998876543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.18  E-value=6.6e-12  Score=102.31  Aligned_cols=37  Identities=43%  Similarity=0.952  Sum_probs=32.4

Q ss_pred             CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhh
Q 023724          137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR  174 (278)
Q Consensus       137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~  174 (278)
                      ..+.|+||++++||+||+||+| .+|||||||||+...
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G   40 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNG   40 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred             CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcc
Confidence            5789999999999999999999 799999999986544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	278
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	2e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	5e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	6e-08

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (142), Expect = 2e-12
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
           R C +C  T TPLWR    G   LCNACG+  + 
Sbjct: 3   RECVNCGATATPLWRRDRTG-HYLCNACGLYHKM 35

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 51.7 bits (124), Expect = 5e-10
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 141 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
           C++C T TTPLWR  P G + LCNACG+  + 
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFLKL 33

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.5 bits (110), Expect = 6e-08
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172
            +CS+C T+TT LWR  P G   +CNACG+  + 
Sbjct: 5   TVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKL 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.63
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.6
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.59

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.7e-17  Score=111.16  Aligned_cols=36  Identities=44%  Similarity=1.013  Sum_probs=33.1

Q ss_pred             CcccccCCCCCCCccccCCCCCcccchHHHHHHHHhh
Q 023724          138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR  174 (278)
Q Consensus       138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~  174 (278)
                      .+.|++|++++||+||+||+| ++|||||||||+...
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G   37 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNG   37 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSC
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhC
Confidence            678999999999999999999 799999999998653

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.60  E-value=6.8e-17  Score=110.69  Aligned_cols=35  Identities=49%  Similarity=1.071  Sum_probs=32.0

Q ss_pred             ccccCCCCCCCccccCCCCCcccchHHHHHHHHhhh
Q 023724          140 ICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  175 (278)
Q Consensus       140 ~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k  175 (278)
                      .|+||++++||+||+||+| ++|||||||||++...
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g~   36 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV   36 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcCC
Confidence            6999999999999999999 7999999999976543

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=3.8e-16  Score=115.64  Aligned_cols=38  Identities=42%  Similarity=0.968  Sum_probs=34.5

Q ss_pred             CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhh
Q 023724          137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK  175 (278)
Q Consensus       137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k  175 (278)
                      ....|+||+|++||+||+||.| .+|||||||||++...
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~   40 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCC
Confidence            4678999999999999999999 7999999999987654